Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45815.t1 | XP_013447002.1 | 88.1 | 176 | 18 | 1 | 1 | 176 | 1 | 173 | 3.80E-84 | 320.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45815.t1 | P31110 | 60.6 | 165 | 59 | 3 | 13 | 176 | 18 | 177 | 6.6e-53 | 208.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45815.t1 | A0A072TU31 | 88.1 | 176 | 18 | 1 | 1 | 176 | 1 | 173 | 2.7e-84 | 320.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059188 | MS.gene45815 | 0.956439 | 2.94E-114 | -1.69E-46 |
MS.gene059189 | MS.gene45815 | 0.957044 | 7.00E-115 | -1.69E-46 |
MS.gene059191 | MS.gene45815 | 0.946544 | 3.77E-105 | -1.69E-46 |
MS.gene059192 | MS.gene45815 | 0.954149 | 5.66E-112 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45815.t1 | MTR_8g096920 | 88.068 | 176 | 18 | 1 | 1 | 176 | 1 | 173 | 1.22e-110 | 312 |
MS.gene45815.t1 | MTR_8g096910 | 79.545 | 176 | 36 | 0 | 1 | 176 | 1 | 176 | 9.36e-106 | 300 |
MS.gene45815.t1 | MTR_8g096900 | 47.748 | 222 | 68 | 4 | 2 | 176 | 28 | 248 | 1.21e-61 | 191 |
MS.gene45815.t1 | MTR_5g010635 | 44.175 | 206 | 66 | 3 | 19 | 176 | 21 | 225 | 3.26e-48 | 157 |
MS.gene45815.t1 | MTR_5g010640 | 50.000 | 162 | 74 | 3 | 1 | 156 | 1 | 161 | 9.49e-47 | 153 |
MS.gene45815.t1 | MTR_2g067990 | 41.206 | 199 | 72 | 7 | 21 | 176 | 26 | 222 | 1.01e-33 | 126 |
MS.gene45815.t1 | MTR_5g059200 | 45.255 | 137 | 62 | 5 | 1 | 132 | 11 | 139 | 3.46e-28 | 106 |
MS.gene45815.t1 | MTR_6g079580 | 37.857 | 140 | 76 | 4 | 1 | 132 | 1 | 137 | 7.39e-28 | 104 |
MS.gene45815.t1 | MTR_4g073720 | 41.420 | 169 | 75 | 9 | 1 | 150 | 1 | 164 | 8.41e-28 | 106 |
MS.gene45815.t1 | MTR_8g107140 | 44.348 | 115 | 53 | 4 | 26 | 132 | 31 | 142 | 7.12e-27 | 102 |
MS.gene45815.t1 | MTR_7g062610 | 39.623 | 159 | 81 | 6 | 1 | 149 | 1 | 154 | 1.07e-26 | 101 |
MS.gene45815.t1 | MTR_5g022350 | 33.333 | 234 | 92 | 11 | 3 | 176 | 14 | 243 | 3.12e-26 | 102 |
MS.gene45815.t1 | MTR_1g021945 | 47.200 | 125 | 56 | 3 | 19 | 134 | 23 | 146 | 4.32e-26 | 100 |
MS.gene45815.t1 | MTR_5g022350 | 44.928 | 138 | 65 | 8 | 6 | 137 | 82 | 214 | 1.03e-25 | 98.6 |
MS.gene45815.t1 | MTR_4g073730 | 42.000 | 150 | 73 | 7 | 3 | 139 | 5 | 153 | 1.93e-25 | 99.4 |
MS.gene45815.t1 | MTR_4g073730 | 42.000 | 150 | 73 | 7 | 3 | 139 | 5 | 153 | 2.65e-25 | 99.8 |
MS.gene45815.t1 | MTR_2g067980 | 35.683 | 227 | 73 | 10 | 21 | 176 | 23 | 247 | 2.91e-25 | 102 |
MS.gene45815.t1 | MTR_8g075510 | 40.237 | 169 | 77 | 9 | 1 | 150 | 4 | 167 | 4.88e-25 | 97.4 |
MS.gene45815.t1 | MTR_8g075510 | 41.497 | 147 | 68 | 8 | 17 | 150 | 26 | 167 | 1.08e-24 | 97.8 |
MS.gene45815.t1 | MTR_3g111620 | 39.597 | 149 | 67 | 5 | 19 | 150 | 24 | 166 | 1.75e-24 | 95.9 |
MS.gene45815.t1 | MTR_8g037890 | 41.007 | 139 | 71 | 5 | 2 | 131 | 7 | 143 | 2.19e-24 | 97.1 |
MS.gene45815.t1 | MTR_8g036215 | 37.791 | 172 | 85 | 8 | 1 | 157 | 1 | 165 | 3.58e-24 | 94.7 |
MS.gene45815.t1 | MTR_1g025420 | 39.241 | 158 | 78 | 5 | 3 | 143 | 4 | 160 | 4.82e-24 | 95.1 |
MS.gene45815.t1 | MTR_8g075550 | 39.181 | 171 | 80 | 7 | 21 | 175 | 27 | 189 | 8.94e-24 | 95.1 |
MS.gene45815.t1 | MTR_1g025420 | 39.241 | 158 | 78 | 5 | 3 | 143 | 4 | 160 | 1.64e-23 | 94.7 |
MS.gene45815.t1 | MTR_5g022310 | 37.107 | 159 | 80 | 6 | 3 | 143 | 8 | 164 | 1.91e-23 | 93.6 |
MS.gene45815.t1 | MTR_5g022310 | 36.747 | 166 | 82 | 7 | 3 | 150 | 8 | 168 | 3.58e-23 | 93.6 |
MS.gene45815.t1 | MTR_2g069660 | 31.557 | 244 | 98 | 8 | 1 | 176 | 1 | 243 | 8.52e-23 | 91.3 |
MS.gene45815.t1 | MTR_8g056820 | 39.855 | 138 | 72 | 5 | 4 | 131 | 7 | 143 | 1.36e-22 | 91.3 |
MS.gene45815.t1 | MTR_3g068015 | 40.876 | 137 | 66 | 7 | 23 | 149 | 29 | 160 | 6.52e-22 | 89.4 |
MS.gene45815.t1 | MTR_3g114030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 9 | 122 | 6.52e-22 | 89.0 |
MS.gene45815.t1 | MTR_2g068030 | 40.984 | 122 | 60 | 5 | 21 | 131 | 22 | 142 | 2.23e-21 | 87.8 |
MS.gene45815.t1 | MTR_1g062630 | 35.714 | 154 | 87 | 7 | 1 | 144 | 1 | 152 | 5.03e-21 | 87.0 |
MS.gene45815.t1 | MTR_2g068655 | 37.126 | 167 | 83 | 7 | 19 | 167 | 28 | 190 | 1.37e-20 | 86.7 |
MS.gene45815.t1 | MTR_6g009480 | 37.681 | 138 | 75 | 5 | 16 | 143 | 23 | 159 | 2.55e-20 | 85.5 |
MS.gene45815.t1 | MTR_1g062350 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 3.00e-20 | 84.7 |
MS.gene45815.t1 | MTR_7g102380 | 37.956 | 137 | 68 | 7 | 10 | 131 | 3 | 137 | 5.36e-20 | 84.0 |
MS.gene45815.t1 | MTR_1g062590 | 33.962 | 159 | 90 | 6 | 1 | 150 | 1 | 153 | 5.43e-20 | 84.0 |
MS.gene45815.t1 | MTR_4g063630 | 36.641 | 131 | 73 | 4 | 11 | 132 | 18 | 147 | 6.63e-20 | 84.0 |
MS.gene45815.t1 | MTR_1g062370 | 32.432 | 185 | 92 | 7 | 1 | 176 | 1 | 161 | 1.01e-19 | 83.2 |
MS.gene45815.t1 | MTR_1g062340 | 35.714 | 140 | 79 | 5 | 1 | 131 | 1 | 138 | 4.00e-19 | 81.6 |
MS.gene45815.t1 | MTR_5g023850 | 32.039 | 206 | 101 | 9 | 8 | 176 | 13 | 216 | 1.58e-18 | 79.7 |
MS.gene45815.t1 | MTR_1g062660 | 31.351 | 185 | 94 | 7 | 1 | 176 | 1 | 161 | 6.62e-18 | 78.6 |
MS.gene45815.t1 | MTR_1g062690 | 29.348 | 184 | 75 | 7 | 1 | 176 | 1 | 137 | 3.54e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45815.t1 | AT4G11650 | 44.196 | 224 | 76 | 4 | 1 | 176 | 1 | 223 | 3.91e-54 | 172 |
MS.gene45815.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 57 | 171 | 1.63e-33 | 121 |
MS.gene45815.t1 | AT1G77700 | 47.368 | 133 | 62 | 3 | 4 | 132 | 43 | 171 | 2.29e-33 | 120 |
MS.gene45815.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 85 | 199 | 2.51e-33 | 121 |
MS.gene45815.t1 | AT1G75050 | 46.324 | 136 | 66 | 2 | 2 | 131 | 5 | 139 | 2.33e-30 | 111 |
MS.gene45815.t1 | AT1G75030 | 44.203 | 138 | 68 | 4 | 1 | 131 | 4 | 139 | 9.30e-28 | 104 |
MS.gene45815.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 3.22e-26 | 101 |
MS.gene45815.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 3.22e-26 | 101 |
MS.gene45815.t1 | AT1G18250 | 45.455 | 121 | 55 | 4 | 19 | 131 | 18 | 135 | 3.71e-26 | 100 |
MS.gene45815.t1 | AT1G73620 | 44.628 | 121 | 56 | 4 | 19 | 131 | 39 | 156 | 4.88e-26 | 100 |
MS.gene45815.t1 | AT1G75040 | 33.750 | 240 | 91 | 8 | 1 | 176 | 4 | 239 | 7.90e-26 | 99.4 |
MS.gene45815.t1 | AT4G38660 | 42.384 | 151 | 66 | 8 | 12 | 143 | 17 | 165 | 8.33e-26 | 101 |
MS.gene45815.t1 | AT1G18250 | 44.262 | 122 | 57 | 4 | 18 | 131 | 18 | 136 | 9.15e-26 | 99.4 |
MS.gene45815.t1 | AT4G38660 | 43.056 | 144 | 64 | 6 | 16 | 143 | 2 | 143 | 2.05e-25 | 100 |
MS.gene45815.t1 | AT1G75800 | 38.994 | 159 | 83 | 6 | 1 | 149 | 1 | 155 | 3.00e-25 | 99.8 |
MS.gene45815.t1 | AT2G17860 | 42.958 | 142 | 69 | 6 | 1 | 131 | 1 | 141 | 1.94e-24 | 95.9 |
MS.gene45815.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 6 | 148 | 4.11e-24 | 97.8 |
MS.gene45815.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 61 | 203 | 4.99e-24 | 97.8 |
MS.gene45815.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 82 | 224 | 5.61e-24 | 97.8 |
MS.gene45815.t1 | AT4G38670 | 41.135 | 141 | 72 | 5 | 1 | 131 | 2 | 141 | 1.74e-23 | 94.0 |
MS.gene45815.t1 | AT4G38670 | 41.135 | 141 | 72 | 5 | 1 | 131 | 2 | 141 | 1.74e-23 | 94.0 |
MS.gene45815.t1 | AT1G19320 | 39.007 | 141 | 72 | 6 | 3 | 132 | 9 | 146 | 2.75e-23 | 92.8 |
MS.gene45815.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 2.16e-22 | 93.6 |
MS.gene45815.t1 | AT5G40020 | 32.222 | 180 | 96 | 8 | 1 | 158 | 1 | 176 | 2.17e-22 | 90.5 |
MS.gene45815.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 2.36e-22 | 93.6 |
MS.gene45815.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 4.61e-22 | 89.7 |
MS.gene45815.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 5.83e-22 | 90.1 |
MS.gene45815.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 6.50e-22 | 89.4 |
MS.gene45815.t1 | AT4G38670 | 42.857 | 126 | 61 | 5 | 16 | 131 | 1 | 125 | 6.64e-22 | 89.7 |
MS.gene45815.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 9.79e-22 | 90.1 |
MS.gene45815.t1 | AT1G20030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 5 | 118 | 1.45e-21 | 89.4 |
MS.gene45815.t1 | AT4G24180 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 1.51e-21 | 89.4 |
MS.gene45815.t1 | AT1G20030 | 43.478 | 115 | 55 | 4 | 24 | 129 | 22 | 135 | 1.70e-21 | 89.4 |
MS.gene45815.t1 | AT2G28790 | 34.706 | 170 | 89 | 9 | 1 | 150 | 26 | 193 | 4.57e-20 | 84.7 |
MS.gene45815.t1 | AT2G28790 | 34.969 | 163 | 87 | 8 | 1 | 146 | 1 | 161 | 4.88e-20 | 84.3 |
MS.gene45815.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 2.76e-19 | 82.4 |
MS.gene45815.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 4.37e-19 | 82.8 |
MS.gene45815.t1 | AT4G24180 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 6.80e-19 | 82.0 |
MS.gene45815.t1 | AT1G70250 | 34.074 | 135 | 79 | 5 | 24 | 150 | 147 | 279 | 4.53e-16 | 75.5 |
MS.gene45815.t1 | AT4G18250 | 27.570 | 214 | 90 | 10 | 26 | 176 | 61 | 272 | 6.52e-11 | 60.5 |
Find 57 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4.4:+76522974 | MS.gene45815:CDS |
ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4.4:+76523116 | MS.gene45815:CDS |
AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4.4:+76522975 | MS.gene45815:CDS |
TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4.4:-76523196 | None:intergenic |
CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4.4:+76523183 | MS.gene45815:CDS |
AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4.4:-76523082 | None:intergenic |
ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4.4:+76523144 | MS.gene45815:CDS |
CAACTGCTGACCTCCACCAC+TGG | 0.367574 | 4.4:-76522914 | None:intergenic |
CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4.4:-76522901 | None:intergenic |
TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4.4:-76523106 | None:intergenic |
GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4.4:+76523006 | MS.gene45815:CDS |
GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4.4:+76523027 | MS.gene45815:CDS |
CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4.4:+76523102 | MS.gene45815:CDS |
GTCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4.4:+76523063 | MS.gene45815:CDS |
TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4.4:-76523243 | None:intergenic |
GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4.4:+76522985 | MS.gene45815:CDS |
ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4.4:-76523298 | None:intergenic |
ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4.4:+76522964 | MS.gene45815:CDS |
GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4.4:-76523177 | None:intergenic |
AACTGCTGACCTCCACCACT+GGG | 0.464906 | 4.4:-76522913 | None:intergenic |
GCCACACGGTGTAGCCGCAT+TGG | 0.474171 | 4.4:-76522879 | None:intergenic |
TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4.4:+76522842 | MS.gene45815:CDS |
CCAGAGTCCATGTTTGACCT+TGG | 0.495410 | 4.4:-76522939 | None:intergenic |
CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4.4:-76522999 | None:intergenic |
CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4.4:-76522967 | None:intergenic |
ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4.4:-76523288 | None:intergenic |
CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4.4:+76523000 | MS.gene45815:CDS |
TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4.4:+76522834 | MS.gene45815:CDS |
GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4.4:+76523208 | MS.gene45815:CDS |
CTGACCTCCACCACTGGGTG+TGG | 0.515916 | 4.4:-76522908 | None:intergenic |
ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4.4:+76523012 | MS.gene45815:CDS |
GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4.4:-76522893 | None:intergenic |
TGGACTCTGGACATCCCAGC+TGG | 0.517689 | 4.4:+76522952 | MS.gene45815:CDS |
GCGGCCACACCCAGTGGTGG+AGG | 0.537857 | 4.4:+76522904 | MS.gene45815:CDS |
CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4.4:+76522901 | MS.gene45815:CDS |
CCAAGGTCAAACATGGACTC+TGG | 0.568915 | 4.4:+76522939 | MS.gene45815:CDS |
CGGCTACACCGTGTGGCCAG+CGG | 0.572344 | 4.4:+76522885 | MS.gene45815:CDS |
TACCGGATAAGCTGCAACTG+AGG | 0.596730 | 4.4:-76523065 | None:intergenic |
ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4.4:-76523013 | None:intergenic |
TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4.4:+76522898 | MS.gene45815:CDS |
GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4.4:+76523270 | MS.gene45815:CDS |
CAGTGGTGGAGGTCAGCAGT+TGG | 0.618697 | 4.4:+76522915 | MS.gene45815:CDS |
AGTTGGACCAAGGTCAAACA+TGG | 0.621156 | 4.4:+76522932 | MS.gene45815:CDS |
ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4.4:+76522976 | MS.gene45815:CDS |
ACCAATGCGGCTACACCGTG+TGG | 0.625115 | 4.4:+76522878 | MS.gene45815:CDS |
GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4.4:-76522966 | None:intergenic |
GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4.4:-76523093 | None:intergenic |
TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4.4:-76523242 | None:intergenic |
GGAGGTCAGCAGTTGGACCA+AGG | 0.656025 | 4.4:+76522922 | MS.gene45815:CDS |
TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4.4:+76523207 | MS.gene45815:CDS |
CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4.4:-76523287 | None:intergenic |
AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4.4:+76523036 | MS.gene45815:CDS |
ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4.4:+76523105 | MS.gene45815:CDS |
TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4.4:+76523039 | MS.gene45815:CDS |
CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4.4:+76523209 | MS.gene45815:CDS |
AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4.4:+76523273 | MS.gene45815:CDS |
TTTGACATTGTAAACCAATG+CGG | 0.728342 | 4.4:+76522865 | MS.gene45815:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTGATTTATCTGTGATTGA+TGG | + | chr4.4:76523144-76523163 | MS.gene45815:CDS | 25.0% |
!!! | GTATTCGTTTTAACATCATT+GGG | - | chr4.4:76523264-76523283 | None:intergenic | 25.0% |
!!! | TGTATTCGTTTTAACATCAT+TGG | - | chr4.4:76523265-76523284 | None:intergenic | 25.0% |
ACAAAAGACAACTTTGTAGT+TGG | - | chr4.4:76523301-76523320 | None:intergenic | 30.0% | |
TTTGACATTGTAAACCAATG+CGG | + | chr4.4:76522865-76522884 | MS.gene45815:CDS | 30.0% | |
! | TGCAACAAAGTATTAAACTG+CGG | + | chr4.4:76523207-76523226 | MS.gene45815:CDS | 30.0% |
AACTTCATCAGGTCGAATTT+GGG | + | chr4.4:76522975-76522994 | MS.gene45815:CDS | 35.0% | |
AATTGTCAAACTGGTGATTG+CGG | + | chr4.4:76523036-76523055 | MS.gene45815:CDS | 35.0% | |
ACTTAACGGTGGAAACAATT+TGG | + | chr4.4:76523116-76523135 | MS.gene45815:CDS | 35.0% | |
CAACTTAGTTCAACCTCTAA+TGG | + | chr4.4:76523183-76523202 | MS.gene45815:CDS | 35.0% | |
CTTACCGAATTCACACTTAA+CGG | + | chr4.4:76523102-76523121 | MS.gene45815:CDS | 35.0% | |
TACTTTGTTGCATCCATTAG+AGG | - | chr4.4:76523199-76523218 | None:intergenic | 35.0% | |
! | CAACAAAGTATTAAACTGCG+GGG | + | chr4.4:76523209-76523228 | MS.gene45815:CDS | 35.0% |
! | GCAACAAAGTATTAAACTGC+GGG | + | chr4.4:76523208-76523227 | MS.gene45815:CDS | 35.0% |
ACTTCATCAGGTCGAATTTG+GGG | + | chr4.4:76522976-76522995 | MS.gene45815:CDS | 40.0% | |
GAACTTCATCAGGTCGAATT+TGG | + | chr4.4:76522974-76522993 | MS.gene45815:CDS | 40.0% | |
GAGGTTGAACTAAGTTGCAT+TGG | - | chr4.4:76523180-76523199 | None:intergenic | 40.0% | |
GGCAATGGTAATTGTCAAAC+TGG | + | chr4.4:76523027-76523046 | MS.gene45815:CDS | 40.0% | |
GTTAAAACGAATACATGCCC+AGG | + | chr4.4:76523270-76523289 | MS.gene45815:CDS | 40.0% | |
TCCACCGTTAAGTGTGAATT+CGG | - | chr4.4:76523109-76523128 | None:intergenic | 40.0% | |
!! | TGGGTTGATGATAAGCATCA+GGG | - | chr4.4:76523245-76523264 | None:intergenic | 40.0% |
!! | TTGGGTTGATGATAAGCATC+AGG | - | chr4.4:76523246-76523265 | None:intergenic | 40.0% |
AAAACGAATACATGCCCAGG+TGG | + | chr4.4:76523273-76523292 | MS.gene45815:CDS | 45.0% | |
ACCGAATTCACACTTAACGG+TGG | + | chr4.4:76523105-76523124 | MS.gene45815:CDS | 45.0% | |
AGTTGGACCAAGGTCAAACA+TGG | + | chr4.4:76522932-76522951 | MS.gene45815:CDS | 45.0% | |
GTGAATTCGGTAAGAGTGAG+CGG | - | chr4.4:76523096-76523115 | None:intergenic | 45.0% | |
TCTCTGCTTGATATCTGCTC+AGG | + | chr4.4:76522834-76522853 | MS.gene45815:CDS | 45.0% | |
! | ACTTTGTAGTTGGTACCACC+TGG | - | chr4.4:76523291-76523310 | None:intergenic | 45.0% |
! | CTTTGTAGTTGGTACCACCT+GGG | - | chr4.4:76523290-76523309 | None:intergenic | 45.0% |
ATCCCAGCTGGAACTTCATC+AGG | + | chr4.4:76522964-76522983 | MS.gene45815:CDS | 50.0% | |
CCAAGGTCAAACATGGACTC+TGG | + | chr4.4:76522939-76522958 | MS.gene45815:CDS | 50.0% | |
CCAGAGTCCATGTTTGACCT+TGG | - | chr4.4:76522942-76522961 | None:intergenic | 50.0% | |
GACCTGATGAAGTTCCAGCT+GGG | - | chr4.4:76522969-76522988 | None:intergenic | 50.0% | |
GTCCTCAGTTGCAGCTTATC+CGG | + | chr4.4:76523063-76523082 | MS.gene45815:CDS | 50.0% | |
TACCGGATAAGCTGCAACTG+AGG | - | chr4.4:76523068-76523087 | None:intergenic | 50.0% | |
TGATATCTGCTCAGGCAGCT+AGG | + | chr4.4:76522842-76522861 | MS.gene45815:CDS | 50.0% | |
TGTCAAACTGGTGATTGCGG+TGG | + | chr4.4:76523039-76523058 | MS.gene45815:CDS | 50.0% | |
! | AAGAGTGAGCGGACTCTTAC+CGG | - | chr4.4:76523085-76523104 | None:intergenic | 50.0% |
AACTGCTGACCTCCACCACT+GGG | - | chr4.4:76522916-76522935 | None:intergenic | 55.0% | |
ACCATTGCCTGAACCGTCGA+AGG | - | chr4.4:76523016-76523035 | None:intergenic | 55.0% | |
ACCTTCGACGGTTCAGGCAA+TGG | + | chr4.4:76523012-76523031 | MS.gene45815:CDS | 55.0% | |
CGAACTGGTTGCACCTTCGA+CGG | + | chr4.4:76523000-76523019 | MS.gene45815:CDS | 55.0% | |
CGACCTGATGAAGTTCCAGC+TGG | - | chr4.4:76522970-76522989 | None:intergenic | 55.0% | |
! | CGTCGAAGGTGCAACCAGTT+CGG | - | chr4.4:76523002-76523021 | None:intergenic | 55.0% |
ACCAATGCGGCTACACCGTG+TGG | + | chr4.4:76522878-76522897 | MS.gene45815:CDS | 60.0% | |
CAACTGCTGACCTCCACCAC+TGG | - | chr4.4:76522917-76522936 | None:intergenic | 60.0% | |
GGAGGTCAGCAGTTGGACCA+AGG | + | chr4.4:76522922-76522941 | MS.gene45815:CDS | 60.0% | |
GGTTGCACCTTCGACGGTTC+AGG | + | chr4.4:76523006-76523025 | MS.gene45815:CDS | 60.0% | |
TGGACTCTGGACATCCCAGC+TGG | + | chr4.4:76522952-76522971 | MS.gene45815:CDS | 60.0% | |
! | CAGTGGTGGAGGTCAGCAGT+TGG | + | chr4.4:76522915-76522934 | MS.gene45815:CDS | 60.0% |
! | GGTCGAATTTGGGGCCGAAC+TGG | + | chr4.4:76522985-76523004 | MS.gene45815:CDS | 60.0% |
CTGACCTCCACCACTGGGTG+TGG | - | chr4.4:76522911-76522930 | None:intergenic | 65.0% | |
GCCACACGGTGTAGCCGCAT+TGG | - | chr4.4:76522882-76522901 | None:intergenic | 65.0% | |
CGGCTACACCGTGTGGCCAG+CGG | + | chr4.4:76522885-76522904 | MS.gene45815:CDS | 70.0% | |
CCACCACTGGGTGTGGCCGC+TGG | - | chr4.4:76522904-76522923 | None:intergenic | 75.0% | |
CCAGCGGCCACACCCAGTGG+TGG | + | chr4.4:76522901-76522920 | MS.gene45815:CDS | 75.0% | |
GCGGCCACACCCAGTGGTGG+AGG | + | chr4.4:76522904-76522923 | MS.gene45815:CDS | 75.0% | |
GGGTGTGGCCGCTGGCCACA+CGG | - | chr4.4:76522896-76522915 | None:intergenic | 75.0% | |
TGGCCAGCGGCCACACCCAG+TGG | + | chr4.4:76522898-76522917 | MS.gene45815:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 76522796 | 76523326 | 76522796 | ID=MS.gene45815 |
chr4.4 | mRNA | 76522796 | 76523326 | 76522796 | ID=MS.gene45815.t1;Parent=MS.gene45815 |
chr4.4 | exon | 76522796 | 76523326 | 76522796 | ID=MS.gene45815.t1.exon1;Parent=MS.gene45815.t1 |
chr4.4 | CDS | 76522796 | 76523326 | 76522796 | ID=cds.MS.gene45815.t1;Parent=MS.gene45815.t1 |
Gene Sequence |
Protein sequence |