Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45816.t1 | XP_013447002.1 | 89.2 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 4.50E-85 | 323.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45816.t1 | P31110 | 61.2 | 165 | 58 | 3 | 13 | 176 | 18 | 177 | 5.1e-53 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45816.t1 | A0A072TU31 | 89.2 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 3.2e-85 | 323.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059188 | MS.gene45816 | 0.877177 | 7.74E-69 | -1.69E-46 |
| MS.gene059189 | MS.gene45816 | 0.876627 | 1.20E-68 | -1.69E-46 |
| MS.gene059191 | MS.gene45816 | 0.897379 | 1.49E-76 | -1.69E-46 |
| MS.gene059192 | MS.gene45816 | 0.895152 | 1.26E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45816.t1 | MTR_8g096920 | 89.205 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 3.69e-112 | 316 |
| MS.gene45816.t1 | MTR_8g096910 | 81.818 | 176 | 32 | 0 | 1 | 176 | 1 | 176 | 2.20e-108 | 307 |
| MS.gene45816.t1 | MTR_8g096900 | 47.297 | 222 | 69 | 4 | 2 | 176 | 28 | 248 | 1.32e-61 | 191 |
| MS.gene45816.t1 | MTR_5g010635 | 44.660 | 206 | 65 | 3 | 19 | 176 | 21 | 225 | 1.84e-49 | 160 |
| MS.gene45816.t1 | MTR_5g010640 | 50.000 | 162 | 74 | 3 | 1 | 156 | 1 | 161 | 1.29e-46 | 152 |
| MS.gene45816.t1 | MTR_2g067990 | 40.704 | 199 | 73 | 7 | 21 | 176 | 26 | 222 | 1.20e-33 | 125 |
| MS.gene45816.t1 | MTR_5g059200 | 45.255 | 137 | 62 | 5 | 1 | 132 | 11 | 139 | 1.79e-28 | 107 |
| MS.gene45816.t1 | MTR_1g021945 | 48.000 | 125 | 55 | 3 | 19 | 134 | 23 | 146 | 2.54e-27 | 103 |
| MS.gene45816.t1 | MTR_4g073720 | 40.828 | 169 | 76 | 9 | 1 | 150 | 1 | 164 | 3.02e-27 | 105 |
| MS.gene45816.t1 | MTR_8g107140 | 44.348 | 115 | 53 | 4 | 26 | 132 | 31 | 142 | 3.46e-27 | 103 |
| MS.gene45816.t1 | MTR_6g079580 | 37.143 | 140 | 77 | 4 | 1 | 132 | 1 | 137 | 9.71e-27 | 101 |
| MS.gene45816.t1 | MTR_7g062610 | 38.994 | 159 | 82 | 6 | 1 | 149 | 1 | 154 | 2.08e-26 | 100 |
| MS.gene45816.t1 | MTR_5g022350 | 32.906 | 234 | 93 | 11 | 3 | 176 | 14 | 243 | 4.99e-26 | 101 |
| MS.gene45816.t1 | MTR_8g037890 | 41.429 | 140 | 71 | 5 | 2 | 132 | 7 | 144 | 1.05e-25 | 100 |
| MS.gene45816.t1 | MTR_5g022350 | 44.203 | 138 | 66 | 8 | 6 | 137 | 82 | 214 | 1.19e-25 | 98.6 |
| MS.gene45816.t1 | MTR_8g075550 | 40.351 | 171 | 78 | 7 | 21 | 175 | 27 | 189 | 2.34e-25 | 99.4 |
| MS.gene45816.t1 | MTR_4g073730 | 41.333 | 150 | 74 | 7 | 3 | 139 | 5 | 153 | 2.76e-25 | 99.0 |
| MS.gene45816.t1 | MTR_3g111620 | 39.597 | 149 | 67 | 5 | 19 | 150 | 24 | 166 | 4.12e-25 | 97.8 |
| MS.gene45816.t1 | MTR_4g073730 | 41.333 | 150 | 74 | 7 | 3 | 139 | 5 | 153 | 4.55e-25 | 99.0 |
| MS.gene45816.t1 | MTR_2g067980 | 35.242 | 227 | 74 | 10 | 21 | 176 | 23 | 247 | 4.76e-25 | 101 |
| MS.gene45816.t1 | MTR_8g075510 | 40.123 | 162 | 76 | 8 | 1 | 143 | 4 | 163 | 1.01e-24 | 96.7 |
| MS.gene45816.t1 | MTR_8g036215 | 37.791 | 172 | 85 | 8 | 1 | 157 | 1 | 165 | 1.72e-24 | 95.9 |
| MS.gene45816.t1 | MTR_8g075510 | 40.816 | 147 | 69 | 8 | 17 | 150 | 26 | 167 | 1.92e-24 | 97.1 |
| MS.gene45816.t1 | MTR_1g025420 | 38.608 | 158 | 79 | 5 | 3 | 143 | 4 | 160 | 5.19e-24 | 95.1 |
| MS.gene45816.t1 | MTR_1g025420 | 38.608 | 158 | 79 | 5 | 3 | 143 | 4 | 160 | 2.12e-23 | 94.4 |
| MS.gene45816.t1 | MTR_5g022310 | 37.107 | 159 | 80 | 6 | 3 | 143 | 8 | 164 | 2.65e-23 | 93.2 |
| MS.gene45816.t1 | MTR_5g022310 | 36.747 | 166 | 82 | 7 | 3 | 150 | 8 | 168 | 4.05e-23 | 93.6 |
| MS.gene45816.t1 | MTR_3g068015 | 40.876 | 137 | 66 | 7 | 23 | 149 | 29 | 160 | 1.03e-22 | 91.3 |
| MS.gene45816.t1 | MTR_8g056820 | 39.130 | 138 | 73 | 5 | 4 | 131 | 7 | 143 | 1.32e-22 | 91.3 |
| MS.gene45816.t1 | MTR_2g069660 | 30.738 | 244 | 100 | 8 | 1 | 176 | 1 | 243 | 2.02e-22 | 90.5 |
| MS.gene45816.t1 | MTR_3g114030 | 42.735 | 117 | 57 | 4 | 24 | 131 | 9 | 124 | 2.42e-22 | 90.1 |
| MS.gene45816.t1 | MTR_2g068030 | 41.803 | 122 | 59 | 5 | 21 | 131 | 22 | 142 | 4.54e-21 | 87.0 |
| MS.gene45816.t1 | MTR_1g062350 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 6.38e-21 | 86.7 |
| MS.gene45816.t1 | MTR_6g009480 | 37.681 | 138 | 75 | 5 | 16 | 143 | 23 | 159 | 1.05e-20 | 86.7 |
| MS.gene45816.t1 | MTR_4g063630 | 36.641 | 131 | 73 | 4 | 11 | 132 | 18 | 147 | 1.65e-20 | 85.5 |
| MS.gene45816.t1 | MTR_1g062630 | 35.461 | 141 | 80 | 6 | 1 | 132 | 1 | 139 | 1.83e-20 | 85.5 |
| MS.gene45816.t1 | MTR_1g062370 | 32.432 | 185 | 92 | 7 | 1 | 176 | 1 | 161 | 2.02e-20 | 85.1 |
| MS.gene45816.t1 | MTR_7g102380 | 37.956 | 137 | 68 | 7 | 10 | 131 | 3 | 137 | 2.66e-20 | 84.7 |
| MS.gene45816.t1 | MTR_2g068655 | 36.527 | 167 | 84 | 7 | 19 | 167 | 28 | 190 | 3.15e-20 | 85.9 |
| MS.gene45816.t1 | MTR_1g062340 | 36.429 | 140 | 78 | 5 | 1 | 131 | 1 | 138 | 5.28e-20 | 84.0 |
| MS.gene45816.t1 | MTR_1g062590 | 33.333 | 159 | 91 | 6 | 1 | 150 | 1 | 153 | 2.77e-19 | 82.0 |
| MS.gene45816.t1 | MTR_1g062660 | 31.351 | 185 | 94 | 7 | 1 | 176 | 1 | 161 | 1.68e-18 | 80.1 |
| MS.gene45816.t1 | MTR_5g023850 | 31.553 | 206 | 102 | 9 | 8 | 176 | 13 | 216 | 3.60e-18 | 79.0 |
| MS.gene45816.t1 | MTR_1g062690 | 29.348 | 184 | 75 | 7 | 1 | 176 | 1 | 137 | 8.78e-14 | 67.0 |
| MS.gene45816.t1 | MTR_5g068670 | 48.438 | 64 | 31 | 2 | 67 | 129 | 25 | 87 | 6.49e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45816.t1 | AT4G11650 | 45.089 | 224 | 74 | 4 | 1 | 176 | 1 | 223 | 1.11e-55 | 176 |
| MS.gene45816.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 57 | 171 | 1.00e-33 | 122 |
| MS.gene45816.t1 | AT1G77700 | 47.368 | 133 | 62 | 3 | 4 | 132 | 43 | 171 | 1.47e-33 | 121 |
| MS.gene45816.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 85 | 199 | 1.63e-33 | 122 |
| MS.gene45816.t1 | AT1G75050 | 45.588 | 136 | 67 | 2 | 2 | 131 | 5 | 139 | 3.80e-30 | 110 |
| MS.gene45816.t1 | AT1G75030 | 43.478 | 138 | 69 | 4 | 1 | 131 | 4 | 139 | 1.86e-27 | 103 |
| MS.gene45816.t1 | AT4G36010 | 51.695 | 118 | 46 | 5 | 24 | 131 | 25 | 141 | 5.04e-27 | 103 |
| MS.gene45816.t1 | AT4G36010 | 51.695 | 118 | 46 | 5 | 24 | 131 | 25 | 141 | 5.04e-27 | 103 |
| MS.gene45816.t1 | AT1G18250 | 45.455 | 121 | 55 | 4 | 19 | 131 | 18 | 135 | 1.38e-26 | 101 |
| MS.gene45816.t1 | AT1G18250 | 44.262 | 122 | 57 | 4 | 18 | 131 | 18 | 136 | 3.45e-26 | 100 |
| MS.gene45816.t1 | AT1G73620 | 43.802 | 121 | 57 | 4 | 19 | 131 | 39 | 156 | 4.08e-26 | 100 |
| MS.gene45816.t1 | AT1G75040 | 33.750 | 240 | 91 | 8 | 1 | 176 | 4 | 239 | 4.36e-26 | 100 |
| MS.gene45816.t1 | AT4G38660 | 42.384 | 151 | 66 | 8 | 12 | 143 | 17 | 165 | 1.56e-25 | 100 |
| MS.gene45816.t1 | AT4G38660 | 43.056 | 144 | 64 | 7 | 16 | 143 | 2 | 143 | 3.83e-25 | 99.4 |
| MS.gene45816.t1 | AT2G17860 | 42.958 | 142 | 69 | 6 | 1 | 131 | 1 | 141 | 4.76e-25 | 97.8 |
| MS.gene45816.t1 | AT1G75800 | 38.365 | 159 | 84 | 6 | 1 | 149 | 1 | 155 | 5.65e-25 | 99.0 |
| MS.gene45816.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 6 | 148 | 2.01e-24 | 98.6 |
| MS.gene45816.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 61 | 203 | 2.67e-24 | 98.6 |
| MS.gene45816.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 82 | 224 | 2.81e-24 | 98.6 |
| MS.gene45816.t1 | AT4G38670 | 41.549 | 142 | 70 | 6 | 1 | 131 | 2 | 141 | 1.30e-23 | 94.4 |
| MS.gene45816.t1 | AT4G38670 | 41.549 | 142 | 70 | 6 | 1 | 131 | 2 | 141 | 1.30e-23 | 94.4 |
| MS.gene45816.t1 | AT5G40020 | 33.333 | 180 | 94 | 8 | 1 | 158 | 1 | 176 | 3.31e-23 | 92.8 |
| MS.gene45816.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 7.07e-23 | 91.7 |
| MS.gene45816.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 8.30e-23 | 94.7 |
| MS.gene45816.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 8.51e-23 | 91.7 |
| MS.gene45816.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 8.91e-23 | 92.4 |
| MS.gene45816.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 9.17e-23 | 94.7 |
| MS.gene45816.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 1.62e-22 | 92.4 |
| MS.gene45816.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 2.18e-22 | 91.7 |
| MS.gene45816.t1 | AT4G38670 | 43.307 | 127 | 59 | 6 | 16 | 131 | 1 | 125 | 4.66e-22 | 90.1 |
| MS.gene45816.t1 | AT1G19320 | 38.298 | 141 | 73 | 6 | 3 | 132 | 9 | 146 | 1.06e-21 | 88.6 |
| MS.gene45816.t1 | AT1G20030 | 42.609 | 115 | 56 | 4 | 24 | 129 | 5 | 118 | 2.69e-21 | 88.6 |
| MS.gene45816.t1 | AT1G20030 | 42.609 | 115 | 56 | 4 | 24 | 129 | 22 | 135 | 3.53e-21 | 88.6 |
| MS.gene45816.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 4.24e-20 | 84.7 |
| MS.gene45816.t1 | AT2G28790 | 33.529 | 170 | 91 | 8 | 1 | 150 | 26 | 193 | 4.81e-20 | 84.7 |
| MS.gene45816.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 5.31e-20 | 85.5 |
| MS.gene45816.t1 | AT2G28790 | 33.742 | 163 | 89 | 7 | 1 | 146 | 1 | 161 | 5.59e-20 | 84.3 |
| MS.gene45816.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 9.66e-20 | 84.3 |
| MS.gene45816.t1 | AT1G70250 | 33.333 | 135 | 80 | 5 | 24 | 150 | 147 | 279 | 5.13e-16 | 75.5 |
| MS.gene45816.t1 | AT4G18250 | 28.037 | 214 | 89 | 10 | 26 | 176 | 61 | 272 | 7.83e-12 | 63.2 |
Find 59 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4.4:+76498763 | MS.gene45816:CDS |
| ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4.4:+76498905 | MS.gene45816:CDS |
| AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4.4:+76498764 | MS.gene45816:CDS |
| TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4.4:-76498985 | None:intergenic |
| CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4.4:+76498972 | MS.gene45816:CDS |
| AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4.4:-76498871 | None:intergenic |
| ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4.4:+76498933 | MS.gene45816:CDS |
| CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4.4:-76498690 | None:intergenic |
| CAACTGCCGACCTCCACCAC+TGG | 0.374879 | 4.4:-76498703 | None:intergenic |
| TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4.4:-76498895 | None:intergenic |
| GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4.4:+76498795 | MS.gene45816:CDS |
| GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4.4:+76498816 | MS.gene45816:CDS |
| CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4.4:+76498891 | MS.gene45816:CDS |
| GCCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4.4:+76498852 | MS.gene45816:CDS |
| TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4.4:-76499032 | None:intergenic |
| GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4.4:+76498774 | MS.gene45816:CDS |
| ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4.4:-76499087 | None:intergenic |
| ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4.4:+76498753 | MS.gene45816:CDS |
| GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4.4:-76498966 | None:intergenic |
| GCCACACGGTGTAGCTGCAT+TGG | 0.471931 | 4.4:-76498668 | None:intergenic |
| CCGACCTCCACCACTGGGTG+TGG | 0.490136 | 4.4:-76498697 | None:intergenic |
| TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4.4:+76498631 | MS.gene45816:CDS |
| AACTGCCGACCTCCACCACT+GGG | 0.492264 | 4.4:-76498702 | None:intergenic |
| CCAGAGCCCATGTTTGACCT+TGG | 0.495410 | 4.4:-76498728 | None:intergenic |
| CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4.4:-76498788 | None:intergenic |
| CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4.4:-76498756 | None:intergenic |
| CCAAGGTCAAACATGGGCTC+TGG | 0.504719 | 4.4:+76498728 | MS.gene45816:CDS |
| ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4.4:-76499077 | None:intergenic |
| CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4.4:+76498789 | MS.gene45816:CDS |
| TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4.4:+76498623 | MS.gene45816:CDS |
| GCGGCCACACCCAGTGGTGG+AGG | 0.514387 | 4.4:+76498693 | MS.gene45816:CDS |
| GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4.4:+76498997 | MS.gene45816:CDS |
| ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4.4:+76498801 | MS.gene45816:CDS |
| GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4.4:-76498682 | None:intergenic |
| TGGGCTCTGGACATCCCAGC+TGG | 0.518638 | 4.4:+76498741 | MS.gene45816:CDS |
| TACCGGATAAGCTGCAACTG+AGG | 0.525880 | 4.4:-76498854 | None:intergenic |
| AGTTGGACCAAGGTCAAACA+TGG | 0.527633 | 4.4:+76498721 | MS.gene45816:CDS |
| CAGTGGTGGAGGTCGGCAGT+TGG | 0.546103 | 4.4:+76498704 | MS.gene45816:CDS |
| CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4.4:+76498690 | MS.gene45816:CDS |
| CAGCTACACCGTGTGGCCAG+CGG | 0.571310 | 4.4:+76498674 | MS.gene45816:CDS |
| CCACACCCAGTGGTGGAGGT+CGG | 0.594695 | 4.4:+76498697 | MS.gene45816:CDS |
| ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4.4:-76498802 | None:intergenic |
| TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4.4:+76498687 | MS.gene45816:CDS |
| ACCGGATAAGCTGCAACTGA+GGG | 0.603028 | 4.4:-76498853 | None:intergenic |
| GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4.4:+76499059 | MS.gene45816:CDS |
| ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4.4:+76498765 | MS.gene45816:CDS |
| GGAGGTCGGCAGTTGGACCA+AGG | 0.633114 | 4.4:+76498711 | MS.gene45816:CDS |
| GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4.4:-76498755 | None:intergenic |
| GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4.4:-76498882 | None:intergenic |
| TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4.4:-76499031 | None:intergenic |
| ACCAATGCAGCTACACCGTG+TGG | 0.655666 | 4.4:+76498667 | MS.gene45816:CDS |
| TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4.4:+76498996 | MS.gene45816:CDS |
| CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4.4:-76499076 | None:intergenic |
| AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4.4:+76498825 | MS.gene45816:CDS |
| ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4.4:+76498894 | MS.gene45816:CDS |
| GTTGGACCAAGGTCAAACAT+GGG | 0.703017 | 4.4:+76498722 | MS.gene45816:CDS |
| TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4.4:+76498828 | MS.gene45816:CDS |
| CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4.4:+76498998 | MS.gene45816:CDS |
| AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4.4:+76499062 | MS.gene45816:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGATTTATCTGTGATTGA+TGG | + | chr4.4:76498933-76498952 | MS.gene45816:CDS | 25.0% |
| !!! | GTATTCGTTTTAACATCATT+GGG | - | chr4.4:76499053-76499072 | None:intergenic | 25.0% |
| !!! | TGTATTCGTTTTAACATCAT+TGG | - | chr4.4:76499054-76499073 | None:intergenic | 25.0% |
| ACAAAAGACAACTTTGTAGT+TGG | - | chr4.4:76499090-76499109 | None:intergenic | 30.0% | |
| ! | TGCAACAAAGTATTAAACTG+CGG | + | chr4.4:76498996-76499015 | MS.gene45816:CDS | 30.0% |
| AACTTCATCAGGTCGAATTT+GGG | + | chr4.4:76498764-76498783 | MS.gene45816:CDS | 35.0% | |
| AATTGTCAAACTGGTGATTG+CGG | + | chr4.4:76498825-76498844 | MS.gene45816:CDS | 35.0% | |
| ACTTAACGGTGGAAACAATT+TGG | + | chr4.4:76498905-76498924 | MS.gene45816:CDS | 35.0% | |
| CAACTTAGTTCAACCTCTAA+TGG | + | chr4.4:76498972-76498991 | MS.gene45816:CDS | 35.0% | |
| CTTACCGAATTCACACTTAA+CGG | + | chr4.4:76498891-76498910 | MS.gene45816:CDS | 35.0% | |
| TACTTTGTTGCATCCATTAG+AGG | - | chr4.4:76498988-76499007 | None:intergenic | 35.0% | |
| ! | CAACAAAGTATTAAACTGCG+GGG | + | chr4.4:76498998-76499017 | MS.gene45816:CDS | 35.0% |
| ! | GCAACAAAGTATTAAACTGC+GGG | + | chr4.4:76498997-76499016 | MS.gene45816:CDS | 35.0% |
| ACTTCATCAGGTCGAATTTG+GGG | + | chr4.4:76498765-76498784 | MS.gene45816:CDS | 40.0% | |
| GAACTTCATCAGGTCGAATT+TGG | + | chr4.4:76498763-76498782 | MS.gene45816:CDS | 40.0% | |
| GAGGTTGAACTAAGTTGCAT+TGG | - | chr4.4:76498969-76498988 | None:intergenic | 40.0% | |
| GGCAATGGTAATTGTCAAAC+TGG | + | chr4.4:76498816-76498835 | MS.gene45816:CDS | 40.0% | |
| GTTAAAACGAATACATGCCC+AGG | + | chr4.4:76499059-76499078 | MS.gene45816:CDS | 40.0% | |
| TCCACCGTTAAGTGTGAATT+CGG | - | chr4.4:76498898-76498917 | None:intergenic | 40.0% | |
| !! | TGGGTTGATGATAAGCATCA+GGG | - | chr4.4:76499034-76499053 | None:intergenic | 40.0% |
| !! | TTGGGTTGATGATAAGCATC+AGG | - | chr4.4:76499035-76499054 | None:intergenic | 40.0% |
| AAAACGAATACATGCCCAGG+TGG | + | chr4.4:76499062-76499081 | MS.gene45816:CDS | 45.0% | |
| ACCGAATTCACACTTAACGG+TGG | + | chr4.4:76498894-76498913 | MS.gene45816:CDS | 45.0% | |
| AGTTGGACCAAGGTCAAACA+TGG | + | chr4.4:76498721-76498740 | MS.gene45816:CDS | 45.0% | |
| GTGAATTCGGTAAGAGTGAG+CGG | - | chr4.4:76498885-76498904 | None:intergenic | 45.0% | |
| GTTGGACCAAGGTCAAACAT+GGG | + | chr4.4:76498722-76498741 | MS.gene45816:CDS | 45.0% | |
| TCTCTGCTTGATATCTGCTC+AGG | + | chr4.4:76498623-76498642 | MS.gene45816:CDS | 45.0% | |
| ! | ACTTTGTAGTTGGTACCACC+TGG | - | chr4.4:76499080-76499099 | None:intergenic | 45.0% |
| ! | CTTTGTAGTTGGTACCACCT+GGG | - | chr4.4:76499079-76499098 | None:intergenic | 45.0% |
| ACCGGATAAGCTGCAACTGA+GGG | - | chr4.4:76498856-76498875 | None:intergenic | 50.0% | |
| ATCCCAGCTGGAACTTCATC+AGG | + | chr4.4:76498753-76498772 | MS.gene45816:CDS | 50.0% | |
| GACCTGATGAAGTTCCAGCT+GGG | - | chr4.4:76498758-76498777 | None:intergenic | 50.0% | |
| TACCGGATAAGCTGCAACTG+AGG | - | chr4.4:76498857-76498876 | None:intergenic | 50.0% | |
| TGATATCTGCTCAGGCAGCT+AGG | + | chr4.4:76498631-76498650 | MS.gene45816:CDS | 50.0% | |
| TGTCAAACTGGTGATTGCGG+TGG | + | chr4.4:76498828-76498847 | MS.gene45816:CDS | 50.0% | |
| ! | AAGAGTGAGCGGACTCTTAC+CGG | - | chr4.4:76498874-76498893 | None:intergenic | 50.0% |
| ACCAATGCAGCTACACCGTG+TGG | + | chr4.4:76498667-76498686 | MS.gene45816:CDS | 55.0% | |
| ACCATTGCCTGAACCGTCGA+AGG | - | chr4.4:76498805-76498824 | None:intergenic | 55.0% | |
| ACCTTCGACGGTTCAGGCAA+TGG | + | chr4.4:76498801-76498820 | MS.gene45816:CDS | 55.0% | |
| CCAAGGTCAAACATGGGCTC+TGG | + | chr4.4:76498728-76498747 | MS.gene45816:CDS | 55.0% | |
| CCAGAGCCCATGTTTGACCT+TGG | - | chr4.4:76498731-76498750 | None:intergenic | 55.0% | |
| CGAACTGGTTGCACCTTCGA+CGG | + | chr4.4:76498789-76498808 | MS.gene45816:CDS | 55.0% | |
| CGACCTGATGAAGTTCCAGC+TGG | - | chr4.4:76498759-76498778 | None:intergenic | 55.0% | |
| GCCCTCAGTTGCAGCTTATC+CGG | + | chr4.4:76498852-76498871 | MS.gene45816:CDS | 55.0% | |
| ! | CGTCGAAGGTGCAACCAGTT+CGG | - | chr4.4:76498791-76498810 | None:intergenic | 55.0% |
| AACTGCCGACCTCCACCACT+GGG | - | chr4.4:76498705-76498724 | None:intergenic | 60.0% | |
| GCCACACGGTGTAGCTGCAT+TGG | - | chr4.4:76498671-76498690 | None:intergenic | 60.0% | |
| GGTTGCACCTTCGACGGTTC+AGG | + | chr4.4:76498795-76498814 | MS.gene45816:CDS | 60.0% | |
| ! | GGTCGAATTTGGGGCCGAAC+TGG | + | chr4.4:76498774-76498793 | MS.gene45816:CDS | 60.0% |
| CAACTGCCGACCTCCACCAC+TGG | - | chr4.4:76498706-76498725 | None:intergenic | 65.0% | |
| CAGCTACACCGTGTGGCCAG+CGG | + | chr4.4:76498674-76498693 | MS.gene45816:CDS | 65.0% | |
| GGAGGTCGGCAGTTGGACCA+AGG | + | chr4.4:76498711-76498730 | MS.gene45816:CDS | 65.0% | |
| ! | CAGTGGTGGAGGTCGGCAGT+TGG | + | chr4.4:76498704-76498723 | MS.gene45816:CDS | 65.0% |
| ! | CCACACCCAGTGGTGGAGGT+CGG | + | chr4.4:76498697-76498716 | MS.gene45816:CDS | 65.0% |
| !! | TGGGCTCTGGACATCCCAGC+TGG | + | chr4.4:76498741-76498760 | MS.gene45816:CDS | 65.0% |
| CCGACCTCCACCACTGGGTG+TGG | - | chr4.4:76498700-76498719 | None:intergenic | 70.0% | |
| CCACCACTGGGTGTGGCCGC+TGG | - | chr4.4:76498693-76498712 | None:intergenic | 75.0% | |
| CCAGCGGCCACACCCAGTGG+TGG | + | chr4.4:76498690-76498709 | MS.gene45816:CDS | 75.0% | |
| GCGGCCACACCCAGTGGTGG+AGG | + | chr4.4:76498693-76498712 | MS.gene45816:CDS | 75.0% | |
| GGGTGTGGCCGCTGGCCACA+CGG | - | chr4.4:76498685-76498704 | None:intergenic | 75.0% | |
| TGGCCAGCGGCCACACCCAG+TGG | + | chr4.4:76498687-76498706 | MS.gene45816:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 76498585 | 76499115 | 76498585 | ID=MS.gene45816 |
| chr4.4 | mRNA | 76498585 | 76499115 | 76498585 | ID=MS.gene45816.t1;Parent=MS.gene45816 |
| chr4.4 | exon | 76498585 | 76499115 | 76498585 | ID=MS.gene45816.t1.exon1;Parent=MS.gene45816.t1 |
| chr4.4 | CDS | 76498585 | 76499115 | 76498585 | ID=cds.MS.gene45816.t1;Parent=MS.gene45816.t1 |
| Gene Sequence |
| Protein sequence |