Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45818.t1 | XP_013447002.1 | 89.2 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 4.50E-85 | 323.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45818.t1 | P31110 | 61.2 | 165 | 58 | 3 | 13 | 176 | 18 | 177 | 5.1e-53 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45818.t1 | A0A072TU31 | 89.2 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 3.2e-85 | 323.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059188 | MS.gene45818 | 0.881594 | 2.11E-70 | -1.69E-46 |
| MS.gene059189 | MS.gene45818 | 0.881484 | 2.31E-70 | -1.69E-46 |
| MS.gene059191 | MS.gene45818 | 0.902665 | 7.69E-79 | -1.69E-46 |
| MS.gene059192 | MS.gene45818 | 0.896682 | 2.92E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45818.t1 | MTR_8g096920 | 89.205 | 176 | 16 | 1 | 1 | 176 | 1 | 173 | 3.69e-112 | 316 |
| MS.gene45818.t1 | MTR_8g096910 | 81.818 | 176 | 32 | 0 | 1 | 176 | 1 | 176 | 2.20e-108 | 307 |
| MS.gene45818.t1 | MTR_8g096900 | 47.297 | 222 | 69 | 4 | 2 | 176 | 28 | 248 | 1.32e-61 | 191 |
| MS.gene45818.t1 | MTR_5g010635 | 44.660 | 206 | 65 | 3 | 19 | 176 | 21 | 225 | 1.84e-49 | 160 |
| MS.gene45818.t1 | MTR_5g010640 | 50.000 | 162 | 74 | 3 | 1 | 156 | 1 | 161 | 1.29e-46 | 152 |
| MS.gene45818.t1 | MTR_2g067990 | 40.704 | 199 | 73 | 7 | 21 | 176 | 26 | 222 | 1.20e-33 | 125 |
| MS.gene45818.t1 | MTR_5g059200 | 45.255 | 137 | 62 | 5 | 1 | 132 | 11 | 139 | 1.79e-28 | 107 |
| MS.gene45818.t1 | MTR_1g021945 | 48.000 | 125 | 55 | 3 | 19 | 134 | 23 | 146 | 2.54e-27 | 103 |
| MS.gene45818.t1 | MTR_4g073720 | 40.828 | 169 | 76 | 9 | 1 | 150 | 1 | 164 | 3.02e-27 | 105 |
| MS.gene45818.t1 | MTR_8g107140 | 44.348 | 115 | 53 | 4 | 26 | 132 | 31 | 142 | 3.46e-27 | 103 |
| MS.gene45818.t1 | MTR_6g079580 | 37.143 | 140 | 77 | 4 | 1 | 132 | 1 | 137 | 9.71e-27 | 101 |
| MS.gene45818.t1 | MTR_7g062610 | 38.994 | 159 | 82 | 6 | 1 | 149 | 1 | 154 | 2.08e-26 | 100 |
| MS.gene45818.t1 | MTR_5g022350 | 32.906 | 234 | 93 | 11 | 3 | 176 | 14 | 243 | 4.99e-26 | 101 |
| MS.gene45818.t1 | MTR_8g037890 | 41.429 | 140 | 71 | 5 | 2 | 132 | 7 | 144 | 1.05e-25 | 100 |
| MS.gene45818.t1 | MTR_5g022350 | 44.203 | 138 | 66 | 8 | 6 | 137 | 82 | 214 | 1.19e-25 | 98.6 |
| MS.gene45818.t1 | MTR_8g075550 | 40.351 | 171 | 78 | 7 | 21 | 175 | 27 | 189 | 2.34e-25 | 99.4 |
| MS.gene45818.t1 | MTR_4g073730 | 41.333 | 150 | 74 | 7 | 3 | 139 | 5 | 153 | 2.76e-25 | 99.0 |
| MS.gene45818.t1 | MTR_3g111620 | 39.597 | 149 | 67 | 5 | 19 | 150 | 24 | 166 | 4.12e-25 | 97.8 |
| MS.gene45818.t1 | MTR_4g073730 | 41.333 | 150 | 74 | 7 | 3 | 139 | 5 | 153 | 4.55e-25 | 99.0 |
| MS.gene45818.t1 | MTR_2g067980 | 35.242 | 227 | 74 | 10 | 21 | 176 | 23 | 247 | 4.76e-25 | 101 |
| MS.gene45818.t1 | MTR_8g075510 | 40.123 | 162 | 76 | 8 | 1 | 143 | 4 | 163 | 1.01e-24 | 96.7 |
| MS.gene45818.t1 | MTR_8g036215 | 37.791 | 172 | 85 | 8 | 1 | 157 | 1 | 165 | 1.72e-24 | 95.9 |
| MS.gene45818.t1 | MTR_8g075510 | 40.816 | 147 | 69 | 8 | 17 | 150 | 26 | 167 | 1.92e-24 | 97.1 |
| MS.gene45818.t1 | MTR_1g025420 | 38.608 | 158 | 79 | 5 | 3 | 143 | 4 | 160 | 5.19e-24 | 95.1 |
| MS.gene45818.t1 | MTR_1g025420 | 38.608 | 158 | 79 | 5 | 3 | 143 | 4 | 160 | 2.12e-23 | 94.4 |
| MS.gene45818.t1 | MTR_5g022310 | 37.107 | 159 | 80 | 6 | 3 | 143 | 8 | 164 | 2.65e-23 | 93.2 |
| MS.gene45818.t1 | MTR_5g022310 | 36.747 | 166 | 82 | 7 | 3 | 150 | 8 | 168 | 4.05e-23 | 93.6 |
| MS.gene45818.t1 | MTR_3g068015 | 40.876 | 137 | 66 | 7 | 23 | 149 | 29 | 160 | 1.03e-22 | 91.3 |
| MS.gene45818.t1 | MTR_8g056820 | 39.130 | 138 | 73 | 5 | 4 | 131 | 7 | 143 | 1.32e-22 | 91.3 |
| MS.gene45818.t1 | MTR_2g069660 | 30.738 | 244 | 100 | 8 | 1 | 176 | 1 | 243 | 2.02e-22 | 90.5 |
| MS.gene45818.t1 | MTR_3g114030 | 42.735 | 117 | 57 | 4 | 24 | 131 | 9 | 124 | 2.42e-22 | 90.1 |
| MS.gene45818.t1 | MTR_2g068030 | 41.803 | 122 | 59 | 5 | 21 | 131 | 22 | 142 | 4.54e-21 | 87.0 |
| MS.gene45818.t1 | MTR_1g062350 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 6.38e-21 | 86.7 |
| MS.gene45818.t1 | MTR_6g009480 | 37.681 | 138 | 75 | 5 | 16 | 143 | 23 | 159 | 1.05e-20 | 86.7 |
| MS.gene45818.t1 | MTR_4g063630 | 36.641 | 131 | 73 | 4 | 11 | 132 | 18 | 147 | 1.65e-20 | 85.5 |
| MS.gene45818.t1 | MTR_1g062630 | 35.461 | 141 | 80 | 6 | 1 | 132 | 1 | 139 | 1.83e-20 | 85.5 |
| MS.gene45818.t1 | MTR_1g062370 | 32.432 | 185 | 92 | 7 | 1 | 176 | 1 | 161 | 2.02e-20 | 85.1 |
| MS.gene45818.t1 | MTR_7g102380 | 37.956 | 137 | 68 | 7 | 10 | 131 | 3 | 137 | 2.66e-20 | 84.7 |
| MS.gene45818.t1 | MTR_2g068655 | 36.527 | 167 | 84 | 7 | 19 | 167 | 28 | 190 | 3.15e-20 | 85.9 |
| MS.gene45818.t1 | MTR_1g062340 | 36.429 | 140 | 78 | 5 | 1 | 131 | 1 | 138 | 5.28e-20 | 84.0 |
| MS.gene45818.t1 | MTR_1g062590 | 33.333 | 159 | 91 | 6 | 1 | 150 | 1 | 153 | 2.77e-19 | 82.0 |
| MS.gene45818.t1 | MTR_1g062660 | 31.351 | 185 | 94 | 7 | 1 | 176 | 1 | 161 | 1.68e-18 | 80.1 |
| MS.gene45818.t1 | MTR_5g023850 | 31.553 | 206 | 102 | 9 | 8 | 176 | 13 | 216 | 3.60e-18 | 79.0 |
| MS.gene45818.t1 | MTR_1g062690 | 29.348 | 184 | 75 | 7 | 1 | 176 | 1 | 137 | 8.78e-14 | 67.0 |
| MS.gene45818.t1 | MTR_5g068670 | 48.438 | 64 | 31 | 2 | 67 | 129 | 25 | 87 | 6.49e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45818.t1 | AT4G11650 | 45.089 | 224 | 74 | 4 | 1 | 176 | 1 | 223 | 1.11e-55 | 176 |
| MS.gene45818.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 57 | 171 | 1.00e-33 | 122 |
| MS.gene45818.t1 | AT1G77700 | 47.368 | 133 | 62 | 3 | 4 | 132 | 43 | 171 | 1.47e-33 | 121 |
| MS.gene45818.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 18 | 132 | 85 | 199 | 1.63e-33 | 122 |
| MS.gene45818.t1 | AT1G75050 | 45.588 | 136 | 67 | 2 | 2 | 131 | 5 | 139 | 3.80e-30 | 110 |
| MS.gene45818.t1 | AT1G75030 | 43.478 | 138 | 69 | 4 | 1 | 131 | 4 | 139 | 1.86e-27 | 103 |
| MS.gene45818.t1 | AT4G36010 | 51.695 | 118 | 46 | 5 | 24 | 131 | 25 | 141 | 5.04e-27 | 103 |
| MS.gene45818.t1 | AT4G36010 | 51.695 | 118 | 46 | 5 | 24 | 131 | 25 | 141 | 5.04e-27 | 103 |
| MS.gene45818.t1 | AT1G18250 | 45.455 | 121 | 55 | 4 | 19 | 131 | 18 | 135 | 1.38e-26 | 101 |
| MS.gene45818.t1 | AT1G18250 | 44.262 | 122 | 57 | 4 | 18 | 131 | 18 | 136 | 3.45e-26 | 100 |
| MS.gene45818.t1 | AT1G73620 | 43.802 | 121 | 57 | 4 | 19 | 131 | 39 | 156 | 4.08e-26 | 100 |
| MS.gene45818.t1 | AT1G75040 | 33.750 | 240 | 91 | 8 | 1 | 176 | 4 | 239 | 4.36e-26 | 100 |
| MS.gene45818.t1 | AT4G38660 | 42.384 | 151 | 66 | 8 | 12 | 143 | 17 | 165 | 1.56e-25 | 100 |
| MS.gene45818.t1 | AT4G38660 | 43.056 | 144 | 64 | 7 | 16 | 143 | 2 | 143 | 3.83e-25 | 99.4 |
| MS.gene45818.t1 | AT2G17860 | 42.958 | 142 | 69 | 6 | 1 | 131 | 1 | 141 | 4.76e-25 | 97.8 |
| MS.gene45818.t1 | AT1G75800 | 38.365 | 159 | 84 | 6 | 1 | 149 | 1 | 155 | 5.65e-25 | 99.0 |
| MS.gene45818.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 6 | 148 | 2.01e-24 | 98.6 |
| MS.gene45818.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 61 | 203 | 2.67e-24 | 98.6 |
| MS.gene45818.t1 | AT5G24620 | 38.621 | 145 | 77 | 5 | 3 | 137 | 82 | 224 | 2.81e-24 | 98.6 |
| MS.gene45818.t1 | AT4G38670 | 41.549 | 142 | 70 | 6 | 1 | 131 | 2 | 141 | 1.30e-23 | 94.4 |
| MS.gene45818.t1 | AT4G38670 | 41.549 | 142 | 70 | 6 | 1 | 131 | 2 | 141 | 1.30e-23 | 94.4 |
| MS.gene45818.t1 | AT5G40020 | 33.333 | 180 | 94 | 8 | 1 | 158 | 1 | 176 | 3.31e-23 | 92.8 |
| MS.gene45818.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 7.07e-23 | 91.7 |
| MS.gene45818.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 8.30e-23 | 94.7 |
| MS.gene45818.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 8.51e-23 | 91.7 |
| MS.gene45818.t1 | AT5G02140 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 8.91e-23 | 92.4 |
| MS.gene45818.t1 | AT5G38280 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 9.17e-23 | 94.7 |
| MS.gene45818.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 1.62e-22 | 92.4 |
| MS.gene45818.t1 | AT4G24180 | 38.095 | 147 | 75 | 6 | 3 | 134 | 14 | 159 | 2.18e-22 | 91.7 |
| MS.gene45818.t1 | AT4G38670 | 43.307 | 127 | 59 | 6 | 16 | 131 | 1 | 125 | 4.66e-22 | 90.1 |
| MS.gene45818.t1 | AT1G19320 | 38.298 | 141 | 73 | 6 | 3 | 132 | 9 | 146 | 1.06e-21 | 88.6 |
| MS.gene45818.t1 | AT1G20030 | 42.609 | 115 | 56 | 4 | 24 | 129 | 5 | 118 | 2.69e-21 | 88.6 |
| MS.gene45818.t1 | AT1G20030 | 42.609 | 115 | 56 | 4 | 24 | 129 | 22 | 135 | 3.53e-21 | 88.6 |
| MS.gene45818.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 4.24e-20 | 84.7 |
| MS.gene45818.t1 | AT2G28790 | 33.529 | 170 | 91 | 8 | 1 | 150 | 26 | 193 | 4.81e-20 | 84.7 |
| MS.gene45818.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 5.31e-20 | 85.5 |
| MS.gene45818.t1 | AT2G28790 | 33.742 | 163 | 89 | 7 | 1 | 146 | 1 | 161 | 5.59e-20 | 84.3 |
| MS.gene45818.t1 | AT4G24180 | 35.811 | 148 | 79 | 6 | 2 | 134 | 8 | 154 | 9.66e-20 | 84.3 |
| MS.gene45818.t1 | AT1G70250 | 33.333 | 135 | 80 | 5 | 24 | 150 | 147 | 279 | 5.13e-16 | 75.5 |
| MS.gene45818.t1 | AT4G18250 | 28.037 | 214 | 89 | 10 | 26 | 176 | 61 | 272 | 7.83e-12 | 63.2 |
Find 59 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4.4:+76491059 | MS.gene45818:CDS |
| ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4.4:+76491201 | MS.gene45818:CDS |
| AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4.4:+76491060 | MS.gene45818:CDS |
| TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4.4:-76491281 | None:intergenic |
| CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4.4:+76491268 | MS.gene45818:CDS |
| AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4.4:-76491167 | None:intergenic |
| ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4.4:+76491229 | MS.gene45818:CDS |
| CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4.4:-76490986 | None:intergenic |
| CAACTGCCGACCTCCACCAC+TGG | 0.374879 | 4.4:-76490999 | None:intergenic |
| TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4.4:-76491191 | None:intergenic |
| GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4.4:+76491091 | MS.gene45818:CDS |
| GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4.4:+76491112 | MS.gene45818:CDS |
| CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4.4:+76491187 | MS.gene45818:CDS |
| GCCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4.4:+76491148 | MS.gene45818:CDS |
| TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4.4:-76491328 | None:intergenic |
| GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4.4:+76491070 | MS.gene45818:CDS |
| ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4.4:-76491383 | None:intergenic |
| ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4.4:+76491049 | MS.gene45818:CDS |
| GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4.4:-76491262 | None:intergenic |
| GCCACACGGTGTAGCTGCAT+TGG | 0.471931 | 4.4:-76490964 | None:intergenic |
| CCGACCTCCACCACTGGGTG+TGG | 0.490136 | 4.4:-76490993 | None:intergenic |
| TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4.4:+76490927 | MS.gene45818:CDS |
| AACTGCCGACCTCCACCACT+GGG | 0.492264 | 4.4:-76490998 | None:intergenic |
| CCAGAGCCCATGTTTGACCT+TGG | 0.495410 | 4.4:-76491024 | None:intergenic |
| CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4.4:-76491084 | None:intergenic |
| CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4.4:-76491052 | None:intergenic |
| CCAAGGTCAAACATGGGCTC+TGG | 0.504719 | 4.4:+76491024 | MS.gene45818:CDS |
| ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4.4:-76491373 | None:intergenic |
| CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4.4:+76491085 | MS.gene45818:CDS |
| TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4.4:+76490919 | MS.gene45818:CDS |
| GCGGCCACACCCAGTGGTGG+AGG | 0.514387 | 4.4:+76490989 | MS.gene45818:CDS |
| GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4.4:+76491293 | MS.gene45818:CDS |
| ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4.4:+76491097 | MS.gene45818:CDS |
| GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4.4:-76490978 | None:intergenic |
| TGGGCTCTGGACATCCCAGC+TGG | 0.518638 | 4.4:+76491037 | MS.gene45818:CDS |
| TACCGGATAAGCTGCAACTG+AGG | 0.525880 | 4.4:-76491150 | None:intergenic |
| AGTTGGACCAAGGTCAAACA+TGG | 0.527633 | 4.4:+76491017 | MS.gene45818:CDS |
| CAGTGGTGGAGGTCGGCAGT+TGG | 0.546103 | 4.4:+76491000 | MS.gene45818:CDS |
| CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4.4:+76490986 | MS.gene45818:CDS |
| CAGCTACACCGTGTGGCCAG+CGG | 0.571310 | 4.4:+76490970 | MS.gene45818:CDS |
| CCACACCCAGTGGTGGAGGT+CGG | 0.594695 | 4.4:+76490993 | MS.gene45818:CDS |
| ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4.4:-76491098 | None:intergenic |
| TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4.4:+76490983 | MS.gene45818:CDS |
| ACCGGATAAGCTGCAACTGA+GGG | 0.603028 | 4.4:-76491149 | None:intergenic |
| GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4.4:+76491355 | MS.gene45818:CDS |
| ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4.4:+76491061 | MS.gene45818:CDS |
| GGAGGTCGGCAGTTGGACCA+AGG | 0.633114 | 4.4:+76491007 | MS.gene45818:CDS |
| GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4.4:-76491051 | None:intergenic |
| GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4.4:-76491178 | None:intergenic |
| TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4.4:-76491327 | None:intergenic |
| ACCAATGCAGCTACACCGTG+TGG | 0.655666 | 4.4:+76490963 | MS.gene45818:CDS |
| TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4.4:+76491292 | MS.gene45818:CDS |
| CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4.4:-76491372 | None:intergenic |
| AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4.4:+76491121 | MS.gene45818:CDS |
| ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4.4:+76491190 | MS.gene45818:CDS |
| GTTGGACCAAGGTCAAACAT+GGG | 0.703017 | 4.4:+76491018 | MS.gene45818:CDS |
| TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4.4:+76491124 | MS.gene45818:CDS |
| CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4.4:+76491294 | MS.gene45818:CDS |
| AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4.4:+76491358 | MS.gene45818:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGATTTATCTGTGATTGA+TGG | + | chr4.4:76491229-76491248 | MS.gene45818:CDS | 25.0% |
| !!! | GTATTCGTTTTAACATCATT+GGG | - | chr4.4:76491349-76491368 | None:intergenic | 25.0% |
| !!! | TGTATTCGTTTTAACATCAT+TGG | - | chr4.4:76491350-76491369 | None:intergenic | 25.0% |
| ACAAAAGACAACTTTGTAGT+TGG | - | chr4.4:76491386-76491405 | None:intergenic | 30.0% | |
| ! | TGCAACAAAGTATTAAACTG+CGG | + | chr4.4:76491292-76491311 | MS.gene45818:CDS | 30.0% |
| AACTTCATCAGGTCGAATTT+GGG | + | chr4.4:76491060-76491079 | MS.gene45818:CDS | 35.0% | |
| AATTGTCAAACTGGTGATTG+CGG | + | chr4.4:76491121-76491140 | MS.gene45818:CDS | 35.0% | |
| ACTTAACGGTGGAAACAATT+TGG | + | chr4.4:76491201-76491220 | MS.gene45818:CDS | 35.0% | |
| CAACTTAGTTCAACCTCTAA+TGG | + | chr4.4:76491268-76491287 | MS.gene45818:CDS | 35.0% | |
| CTTACCGAATTCACACTTAA+CGG | + | chr4.4:76491187-76491206 | MS.gene45818:CDS | 35.0% | |
| TACTTTGTTGCATCCATTAG+AGG | - | chr4.4:76491284-76491303 | None:intergenic | 35.0% | |
| ! | CAACAAAGTATTAAACTGCG+GGG | + | chr4.4:76491294-76491313 | MS.gene45818:CDS | 35.0% |
| ! | GCAACAAAGTATTAAACTGC+GGG | + | chr4.4:76491293-76491312 | MS.gene45818:CDS | 35.0% |
| ACTTCATCAGGTCGAATTTG+GGG | + | chr4.4:76491061-76491080 | MS.gene45818:CDS | 40.0% | |
| GAACTTCATCAGGTCGAATT+TGG | + | chr4.4:76491059-76491078 | MS.gene45818:CDS | 40.0% | |
| GAGGTTGAACTAAGTTGCAT+TGG | - | chr4.4:76491265-76491284 | None:intergenic | 40.0% | |
| GGCAATGGTAATTGTCAAAC+TGG | + | chr4.4:76491112-76491131 | MS.gene45818:CDS | 40.0% | |
| GTTAAAACGAATACATGCCC+AGG | + | chr4.4:76491355-76491374 | MS.gene45818:CDS | 40.0% | |
| TCCACCGTTAAGTGTGAATT+CGG | - | chr4.4:76491194-76491213 | None:intergenic | 40.0% | |
| !! | TGGGTTGATGATAAGCATCA+GGG | - | chr4.4:76491330-76491349 | None:intergenic | 40.0% |
| !! | TTGGGTTGATGATAAGCATC+AGG | - | chr4.4:76491331-76491350 | None:intergenic | 40.0% |
| AAAACGAATACATGCCCAGG+TGG | + | chr4.4:76491358-76491377 | MS.gene45818:CDS | 45.0% | |
| ACCGAATTCACACTTAACGG+TGG | + | chr4.4:76491190-76491209 | MS.gene45818:CDS | 45.0% | |
| AGTTGGACCAAGGTCAAACA+TGG | + | chr4.4:76491017-76491036 | MS.gene45818:CDS | 45.0% | |
| GTGAATTCGGTAAGAGTGAG+CGG | - | chr4.4:76491181-76491200 | None:intergenic | 45.0% | |
| GTTGGACCAAGGTCAAACAT+GGG | + | chr4.4:76491018-76491037 | MS.gene45818:CDS | 45.0% | |
| TCTCTGCTTGATATCTGCTC+AGG | + | chr4.4:76490919-76490938 | MS.gene45818:CDS | 45.0% | |
| ! | ACTTTGTAGTTGGTACCACC+TGG | - | chr4.4:76491376-76491395 | None:intergenic | 45.0% |
| ! | CTTTGTAGTTGGTACCACCT+GGG | - | chr4.4:76491375-76491394 | None:intergenic | 45.0% |
| ACCGGATAAGCTGCAACTGA+GGG | - | chr4.4:76491152-76491171 | None:intergenic | 50.0% | |
| ATCCCAGCTGGAACTTCATC+AGG | + | chr4.4:76491049-76491068 | MS.gene45818:CDS | 50.0% | |
| GACCTGATGAAGTTCCAGCT+GGG | - | chr4.4:76491054-76491073 | None:intergenic | 50.0% | |
| TACCGGATAAGCTGCAACTG+AGG | - | chr4.4:76491153-76491172 | None:intergenic | 50.0% | |
| TGATATCTGCTCAGGCAGCT+AGG | + | chr4.4:76490927-76490946 | MS.gene45818:CDS | 50.0% | |
| TGTCAAACTGGTGATTGCGG+TGG | + | chr4.4:76491124-76491143 | MS.gene45818:CDS | 50.0% | |
| ! | AAGAGTGAGCGGACTCTTAC+CGG | - | chr4.4:76491170-76491189 | None:intergenic | 50.0% |
| ACCAATGCAGCTACACCGTG+TGG | + | chr4.4:76490963-76490982 | MS.gene45818:CDS | 55.0% | |
| ACCATTGCCTGAACCGTCGA+AGG | - | chr4.4:76491101-76491120 | None:intergenic | 55.0% | |
| ACCTTCGACGGTTCAGGCAA+TGG | + | chr4.4:76491097-76491116 | MS.gene45818:CDS | 55.0% | |
| CCAAGGTCAAACATGGGCTC+TGG | + | chr4.4:76491024-76491043 | MS.gene45818:CDS | 55.0% | |
| CCAGAGCCCATGTTTGACCT+TGG | - | chr4.4:76491027-76491046 | None:intergenic | 55.0% | |
| CGAACTGGTTGCACCTTCGA+CGG | + | chr4.4:76491085-76491104 | MS.gene45818:CDS | 55.0% | |
| CGACCTGATGAAGTTCCAGC+TGG | - | chr4.4:76491055-76491074 | None:intergenic | 55.0% | |
| GCCCTCAGTTGCAGCTTATC+CGG | + | chr4.4:76491148-76491167 | MS.gene45818:CDS | 55.0% | |
| ! | CGTCGAAGGTGCAACCAGTT+CGG | - | chr4.4:76491087-76491106 | None:intergenic | 55.0% |
| AACTGCCGACCTCCACCACT+GGG | - | chr4.4:76491001-76491020 | None:intergenic | 60.0% | |
| GCCACACGGTGTAGCTGCAT+TGG | - | chr4.4:76490967-76490986 | None:intergenic | 60.0% | |
| GGTTGCACCTTCGACGGTTC+AGG | + | chr4.4:76491091-76491110 | MS.gene45818:CDS | 60.0% | |
| ! | GGTCGAATTTGGGGCCGAAC+TGG | + | chr4.4:76491070-76491089 | MS.gene45818:CDS | 60.0% |
| CAACTGCCGACCTCCACCAC+TGG | - | chr4.4:76491002-76491021 | None:intergenic | 65.0% | |
| CAGCTACACCGTGTGGCCAG+CGG | + | chr4.4:76490970-76490989 | MS.gene45818:CDS | 65.0% | |
| GGAGGTCGGCAGTTGGACCA+AGG | + | chr4.4:76491007-76491026 | MS.gene45818:CDS | 65.0% | |
| ! | CAGTGGTGGAGGTCGGCAGT+TGG | + | chr4.4:76491000-76491019 | MS.gene45818:CDS | 65.0% |
| ! | CCACACCCAGTGGTGGAGGT+CGG | + | chr4.4:76490993-76491012 | MS.gene45818:CDS | 65.0% |
| !! | TGGGCTCTGGACATCCCAGC+TGG | + | chr4.4:76491037-76491056 | MS.gene45818:CDS | 65.0% |
| CCGACCTCCACCACTGGGTG+TGG | - | chr4.4:76490996-76491015 | None:intergenic | 70.0% | |
| CCACCACTGGGTGTGGCCGC+TGG | - | chr4.4:76490989-76491008 | None:intergenic | 75.0% | |
| CCAGCGGCCACACCCAGTGG+TGG | + | chr4.4:76490986-76491005 | MS.gene45818:CDS | 75.0% | |
| GCGGCCACACCCAGTGGTGG+AGG | + | chr4.4:76490989-76491008 | MS.gene45818:CDS | 75.0% | |
| GGGTGTGGCCGCTGGCCACA+CGG | - | chr4.4:76490981-76491000 | None:intergenic | 75.0% | |
| TGGCCAGCGGCCACACCCAG+TGG | + | chr4.4:76490983-76491002 | MS.gene45818:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 76490881 | 76491411 | 76490881 | ID=MS.gene45818 |
| chr4.4 | mRNA | 76490881 | 76491411 | 76490881 | ID=MS.gene45818.t1;Parent=MS.gene45818 |
| chr4.4 | exon | 76490881 | 76491411 | 76490881 | ID=MS.gene45818.t1.exon1;Parent=MS.gene45818.t1 |
| chr4.4 | CDS | 76490881 | 76491411 | 76490881 | ID=cds.MS.gene45818.t1;Parent=MS.gene45818.t1 |
| Gene Sequence |
| Protein sequence |