Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45820.t1 | XP_013447002.1 | 87.3 | 166 | 21 | 0 | 1 | 166 | 8 | 173 | 4.40E-82 | 313.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45820.t1 | P31110 | 60.6 | 165 | 59 | 3 | 3 | 166 | 18 | 177 | 3.7e-53 | 209.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45820.t1 | A0A072TU31 | 87.3 | 166 | 21 | 0 | 1 | 166 | 8 | 173 | 3.2e-82 | 313.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059188 | MS.gene45820 | 0.964031 | 8.11E-123 | -1.69E-46 |
MS.gene059189 | MS.gene45820 | 0.966007 | 2.38E-125 | -1.69E-46 |
MS.gene059191 | MS.gene45820 | 0.944097 | 3.64E-103 | -1.69E-46 |
MS.gene059192 | MS.gene45820 | 0.955032 | 7.69E-113 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45820.t1 | MTR_8g096920 | 87.349 | 166 | 21 | 0 | 1 | 166 | 8 | 173 | 1.63e-106 | 301 |
MS.gene45820.t1 | MTR_8g096910 | 79.518 | 166 | 34 | 0 | 1 | 166 | 11 | 176 | 3.51e-100 | 286 |
MS.gene45820.t1 | MTR_8g096900 | 47.685 | 216 | 62 | 5 | 1 | 166 | 34 | 248 | 1.55e-58 | 183 |
MS.gene45820.t1 | MTR_5g010635 | 44.175 | 206 | 66 | 3 | 9 | 166 | 21 | 225 | 4.83e-48 | 156 |
MS.gene45820.t1 | MTR_5g010640 | 51.748 | 143 | 66 | 2 | 6 | 146 | 20 | 161 | 9.26e-45 | 147 |
MS.gene45820.t1 | MTR_2g067990 | 41.206 | 199 | 72 | 7 | 11 | 166 | 26 | 222 | 1.50e-33 | 125 |
MS.gene45820.t1 | MTR_5g059200 | 48.305 | 118 | 52 | 4 | 10 | 122 | 26 | 139 | 8.00e-28 | 105 |
MS.gene45820.t1 | MTR_6g079580 | 41.176 | 136 | 63 | 5 | 1 | 122 | 5 | 137 | 3.77e-27 | 102 |
MS.gene45820.t1 | MTR_8g107140 | 44.348 | 115 | 53 | 4 | 16 | 122 | 31 | 142 | 9.90e-27 | 101 |
MS.gene45820.t1 | MTR_1g021945 | 47.200 | 125 | 56 | 3 | 9 | 124 | 23 | 146 | 3.73e-26 | 100 |
MS.gene45820.t1 | MTR_7g062610 | 41.259 | 143 | 70 | 5 | 6 | 139 | 17 | 154 | 3.99e-26 | 99.8 |
MS.gene45820.t1 | MTR_4g073720 | 43.421 | 152 | 65 | 8 | 1 | 133 | 11 | 160 | 1.12e-25 | 100 |
MS.gene45820.t1 | MTR_5g022350 | 34.419 | 215 | 79 | 10 | 12 | 166 | 31 | 243 | 2.10e-25 | 99.4 |
MS.gene45820.t1 | MTR_2g067980 | 35.443 | 237 | 79 | 11 | 2 | 166 | 13 | 247 | 4.83e-25 | 100 |
MS.gene45820.t1 | MTR_5g022350 | 45.669 | 127 | 60 | 7 | 7 | 127 | 91 | 214 | 5.85e-25 | 96.3 |
MS.gene45820.t1 | MTR_8g075510 | 41.497 | 147 | 68 | 8 | 7 | 140 | 26 | 167 | 1.31e-24 | 95.9 |
MS.gene45820.t1 | MTR_3g111620 | 39.597 | 149 | 67 | 5 | 9 | 140 | 24 | 166 | 2.18e-24 | 95.5 |
MS.gene45820.t1 | MTR_8g075510 | 41.497 | 147 | 68 | 8 | 7 | 140 | 26 | 167 | 2.22e-24 | 96.7 |
MS.gene45820.t1 | MTR_4g073730 | 42.958 | 142 | 67 | 7 | 1 | 129 | 13 | 153 | 4.96e-24 | 95.1 |
MS.gene45820.t1 | MTR_4g073730 | 42.958 | 142 | 67 | 7 | 1 | 129 | 13 | 153 | 6.79e-24 | 95.5 |
MS.gene45820.t1 | MTR_8g075550 | 39.181 | 171 | 80 | 7 | 11 | 165 | 27 | 189 | 7.83e-24 | 95.1 |
MS.gene45820.t1 | MTR_8g037890 | 42.400 | 125 | 62 | 4 | 6 | 121 | 20 | 143 | 8.71e-24 | 95.1 |
MS.gene45820.t1 | MTR_1g025420 | 42.336 | 137 | 61 | 5 | 14 | 133 | 25 | 160 | 3.18e-23 | 92.8 |
MS.gene45820.t1 | MTR_8g036215 | 37.654 | 162 | 81 | 7 | 1 | 147 | 9 | 165 | 5.60e-23 | 91.3 |
MS.gene45820.t1 | MTR_5g022310 | 38.356 | 146 | 71 | 5 | 6 | 133 | 20 | 164 | 7.82e-23 | 91.3 |
MS.gene45820.t1 | MTR_1g025420 | 42.336 | 137 | 61 | 5 | 14 | 133 | 25 | 160 | 8.55e-23 | 92.4 |
MS.gene45820.t1 | MTR_5g022310 | 37.908 | 153 | 73 | 6 | 6 | 140 | 20 | 168 | 1.35e-22 | 91.7 |
MS.gene45820.t1 | MTR_3g114030 | 42.735 | 117 | 57 | 4 | 14 | 121 | 9 | 124 | 5.04e-22 | 89.0 |
MS.gene45820.t1 | MTR_3g068015 | 40.876 | 137 | 66 | 7 | 13 | 139 | 29 | 160 | 5.59e-22 | 89.0 |
MS.gene45820.t1 | MTR_8g056820 | 41.600 | 125 | 63 | 4 | 6 | 121 | 20 | 143 | 1.10e-21 | 88.6 |
MS.gene45820.t1 | MTR_2g068030 | 42.623 | 122 | 58 | 5 | 11 | 121 | 22 | 142 | 2.06e-21 | 87.8 |
MS.gene45820.t1 | MTR_2g069660 | 31.897 | 232 | 89 | 8 | 3 | 166 | 13 | 243 | 3.86e-21 | 86.7 |
MS.gene45820.t1 | MTR_2g068655 | 37.126 | 167 | 83 | 7 | 9 | 157 | 28 | 190 | 1.65e-20 | 86.3 |
MS.gene45820.t1 | MTR_6g009480 | 37.681 | 138 | 75 | 5 | 6 | 133 | 23 | 159 | 3.06e-20 | 84.7 |
MS.gene45820.t1 | MTR_4g063630 | 36.641 | 131 | 73 | 4 | 1 | 122 | 18 | 147 | 7.14e-20 | 83.6 |
MS.gene45820.t1 | MTR_7g102380 | 36.765 | 136 | 69 | 6 | 1 | 121 | 4 | 137 | 7.99e-20 | 83.2 |
MS.gene45820.t1 | MTR_1g062630 | 37.692 | 130 | 70 | 6 | 2 | 122 | 12 | 139 | 1.45e-18 | 80.1 |
MS.gene45820.t1 | MTR_1g062350 | 33.908 | 174 | 82 | 7 | 2 | 166 | 12 | 161 | 1.70e-18 | 79.7 |
MS.gene45820.t1 | MTR_5g023850 | 32.308 | 195 | 94 | 8 | 9 | 166 | 23 | 216 | 2.09e-18 | 79.0 |
MS.gene45820.t1 | MTR_1g062370 | 33.333 | 174 | 83 | 7 | 2 | 166 | 12 | 161 | 5.85e-18 | 78.2 |
MS.gene45820.t1 | MTR_1g062340 | 37.209 | 129 | 70 | 5 | 2 | 121 | 12 | 138 | 1.10e-17 | 77.4 |
MS.gene45820.t1 | MTR_1g062590 | 35.135 | 148 | 81 | 6 | 2 | 140 | 12 | 153 | 1.99e-17 | 77.0 |
MS.gene45820.t1 | MTR_1g062660 | 32.955 | 176 | 83 | 8 | 2 | 166 | 10 | 161 | 8.24e-17 | 75.1 |
MS.gene45820.t1 | MTR_1g062690 | 30.058 | 173 | 66 | 7 | 2 | 166 | 12 | 137 | 1.78e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45820.t1 | AT4G11650 | 44.762 | 210 | 68 | 3 | 4 | 166 | 15 | 223 | 5.24e-53 | 169 |
MS.gene45820.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 8 | 122 | 57 | 171 | 2.40e-33 | 120 |
MS.gene45820.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 8 | 122 | 57 | 171 | 2.71e-33 | 120 |
MS.gene45820.t1 | AT1G77700 | 51.261 | 119 | 50 | 3 | 8 | 122 | 85 | 199 | 2.90e-33 | 120 |
MS.gene45820.t1 | AT1G75050 | 47.541 | 122 | 57 | 2 | 6 | 121 | 19 | 139 | 2.00e-28 | 105 |
MS.gene45820.t1 | AT1G75030 | 44.531 | 128 | 63 | 3 | 1 | 121 | 13 | 139 | 6.17e-27 | 102 |
MS.gene45820.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 14 | 121 | 25 | 141 | 2.69e-26 | 101 |
MS.gene45820.t1 | AT4G36010 | 50.847 | 118 | 47 | 5 | 14 | 121 | 25 | 141 | 2.69e-26 | 101 |
MS.gene45820.t1 | AT1G18250 | 45.455 | 121 | 55 | 4 | 9 | 121 | 18 | 135 | 4.86e-26 | 99.8 |
MS.gene45820.t1 | AT1G73620 | 44.628 | 121 | 56 | 4 | 9 | 121 | 39 | 156 | 5.49e-26 | 100 |
MS.gene45820.t1 | AT4G38660 | 41.060 | 151 | 68 | 7 | 2 | 133 | 17 | 165 | 7.92e-26 | 100 |
MS.gene45820.t1 | AT1G18250 | 44.262 | 122 | 57 | 4 | 8 | 121 | 18 | 136 | 1.17e-25 | 98.6 |
MS.gene45820.t1 | AT4G38660 | 41.667 | 144 | 66 | 5 | 6 | 133 | 2 | 143 | 2.41e-25 | 99.4 |
MS.gene45820.t1 | AT1G75040 | 33.478 | 230 | 86 | 7 | 1 | 166 | 13 | 239 | 5.14e-25 | 97.1 |
MS.gene45820.t1 | AT1G75800 | 40.268 | 149 | 75 | 6 | 1 | 139 | 11 | 155 | 9.86e-25 | 97.8 |
MS.gene45820.t1 | AT2G17860 | 47.458 | 118 | 51 | 5 | 14 | 121 | 25 | 141 | 4.11e-23 | 92.0 |
MS.gene45820.t1 | AT1G19320 | 39.098 | 133 | 69 | 5 | 1 | 122 | 15 | 146 | 4.61e-23 | 92.0 |
MS.gene45820.t1 | AT5G38280 | 37.778 | 135 | 72 | 5 | 14 | 139 | 27 | 158 | 1.27e-22 | 94.0 |
MS.gene45820.t1 | AT5G24620 | 40.299 | 134 | 70 | 4 | 3 | 127 | 16 | 148 | 1.98e-22 | 92.8 |
MS.gene45820.t1 | AT4G38670 | 43.077 | 130 | 63 | 5 | 2 | 121 | 13 | 141 | 2.22e-22 | 90.9 |
MS.gene45820.t1 | AT4G38670 | 43.077 | 130 | 63 | 5 | 2 | 121 | 13 | 141 | 2.22e-22 | 90.9 |
MS.gene45820.t1 | AT5G24620 | 40.741 | 135 | 68 | 5 | 3 | 127 | 92 | 224 | 2.35e-22 | 92.8 |
MS.gene45820.t1 | AT5G24620 | 41.732 | 127 | 62 | 5 | 3 | 119 | 71 | 195 | 2.53e-22 | 92.8 |
MS.gene45820.t1 | AT4G38670 | 42.857 | 126 | 61 | 5 | 6 | 121 | 1 | 125 | 4.77e-22 | 89.7 |
MS.gene45820.t1 | AT5G38280 | 40.152 | 132 | 65 | 6 | 1 | 119 | 10 | 140 | 6.03e-22 | 92.0 |
MS.gene45820.t1 | AT5G02140 | 36.842 | 171 | 90 | 8 | 1 | 154 | 7 | 176 | 6.56e-22 | 89.0 |
MS.gene45820.t1 | AT5G02140 | 36.842 | 171 | 90 | 8 | 1 | 154 | 7 | 176 | 7.09e-22 | 89.7 |
MS.gene45820.t1 | AT1G20030 | 42.735 | 117 | 57 | 4 | 14 | 121 | 5 | 120 | 1.46e-21 | 89.0 |
MS.gene45820.t1 | AT1G20030 | 42.735 | 117 | 57 | 4 | 14 | 121 | 22 | 137 | 1.83e-21 | 89.0 |
MS.gene45820.t1 | AT5G40020 | 32.911 | 158 | 86 | 6 | 7 | 148 | 23 | 176 | 2.84e-21 | 87.4 |
MS.gene45820.t1 | AT4G24180 | 38.235 | 136 | 68 | 6 | 4 | 124 | 25 | 159 | 6.21e-20 | 84.0 |
MS.gene45820.t1 | AT4G24180 | 38.235 | 136 | 68 | 6 | 4 | 124 | 25 | 159 | 9.62e-20 | 84.3 |
MS.gene45820.t1 | AT2G28790 | 37.121 | 132 | 71 | 6 | 16 | 136 | 56 | 186 | 1.40e-19 | 83.2 |
MS.gene45820.t1 | AT4G24180 | 37.410 | 139 | 71 | 6 | 1 | 124 | 22 | 159 | 1.52e-19 | 83.6 |
MS.gene45820.t1 | AT2G28790 | 37.121 | 132 | 71 | 6 | 16 | 136 | 31 | 161 | 1.79e-19 | 82.4 |
MS.gene45820.t1 | AT4G24180 | 39.062 | 128 | 62 | 6 | 12 | 124 | 28 | 154 | 9.85e-19 | 80.5 |
MS.gene45820.t1 | AT4G24180 | 39.062 | 128 | 62 | 6 | 12 | 124 | 28 | 154 | 1.20e-18 | 81.3 |
MS.gene45820.t1 | AT4G24180 | 37.500 | 136 | 69 | 6 | 4 | 124 | 20 | 154 | 2.02e-18 | 80.5 |
MS.gene45820.t1 | AT1G70250 | 34.074 | 135 | 79 | 5 | 14 | 140 | 147 | 279 | 5.52e-16 | 74.7 |
MS.gene45820.t1 | AT4G18250 | 27.570 | 214 | 90 | 10 | 16 | 166 | 61 | 272 | 4.46e-11 | 60.5 |
Find 57 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4.4:+76448643 | MS.gene45820:CDS |
ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4.4:+76448785 | MS.gene45820:CDS |
AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4.4:+76448644 | MS.gene45820:CDS |
TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4.4:-76448865 | None:intergenic |
CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4.4:+76448852 | MS.gene45820:CDS |
AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4.4:-76448751 | None:intergenic |
ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4.4:+76448813 | MS.gene45820:CDS |
CAACTGCTGACCTCCACCAC+TGG | 0.367574 | 4.4:-76448583 | None:intergenic |
CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4.4:-76448570 | None:intergenic |
TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4.4:-76448775 | None:intergenic |
GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4.4:+76448675 | MS.gene45820:CDS |
GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4.4:+76448696 | MS.gene45820:CDS |
CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4.4:+76448771 | MS.gene45820:CDS |
GTCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4.4:+76448732 | MS.gene45820:CDS |
TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4.4:-76448912 | None:intergenic |
GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4.4:+76448654 | MS.gene45820:CDS |
ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4.4:-76448967 | None:intergenic |
ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4.4:+76448633 | MS.gene45820:CDS |
GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4.4:-76448846 | None:intergenic |
AACTGCTGACCTCCACCACT+GGG | 0.464906 | 4.4:-76448582 | None:intergenic |
GCCACACGGTGTAGCCGCAT+TGG | 0.474171 | 4.4:-76448548 | None:intergenic |
TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4.4:+76448511 | MS.gene45820:CDS |
CCAGAGTCCATGTTTGACCT+TGG | 0.495410 | 4.4:-76448608 | None:intergenic |
CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4.4:-76448668 | None:intergenic |
CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4.4:-76448636 | None:intergenic |
ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4.4:-76448957 | None:intergenic |
CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4.4:+76448669 | MS.gene45820:CDS |
TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4.4:+76448503 | MS.gene45820:CDS |
GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4.4:+76448877 | MS.gene45820:CDS |
CTGACCTCCACCACTGGGTG+TGG | 0.515916 | 4.4:-76448577 | None:intergenic |
ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4.4:+76448681 | MS.gene45820:CDS |
GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4.4:-76448562 | None:intergenic |
TGGACTCTGGACATCCCAGC+TGG | 0.517689 | 4.4:+76448621 | MS.gene45820:CDS |
GCGGCCACACCCAGTGGTGG+AGG | 0.537857 | 4.4:+76448573 | MS.gene45820:CDS |
CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4.4:+76448570 | MS.gene45820:CDS |
CCAAGGTCAAACATGGACTC+TGG | 0.568915 | 4.4:+76448608 | MS.gene45820:CDS |
CGGCTACACCGTGTGGCCAG+CGG | 0.572344 | 4.4:+76448554 | MS.gene45820:CDS |
TACCGGATAAGCTGCAACTG+AGG | 0.596730 | 4.4:-76448734 | None:intergenic |
ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4.4:-76448682 | None:intergenic |
TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4.4:+76448567 | MS.gene45820:CDS |
GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4.4:+76448939 | MS.gene45820:CDS |
CAGTGGTGGAGGTCAGCAGT+TGG | 0.618697 | 4.4:+76448584 | MS.gene45820:CDS |
AGTTGGACCAAGGTCAAACA+TGG | 0.621156 | 4.4:+76448601 | MS.gene45820:CDS |
ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4.4:+76448645 | MS.gene45820:CDS |
ACCAATGCGGCTACACCGTG+TGG | 0.625115 | 4.4:+76448547 | MS.gene45820:CDS |
GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4.4:-76448635 | None:intergenic |
GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4.4:-76448762 | None:intergenic |
TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4.4:-76448911 | None:intergenic |
GGAGGTCAGCAGTTGGACCA+AGG | 0.656025 | 4.4:+76448591 | MS.gene45820:CDS |
TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4.4:+76448876 | MS.gene45820:CDS |
CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4.4:-76448956 | None:intergenic |
AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4.4:+76448705 | MS.gene45820:CDS |
ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4.4:+76448774 | MS.gene45820:CDS |
TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4.4:+76448708 | MS.gene45820:CDS |
CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4.4:+76448878 | MS.gene45820:CDS |
AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4.4:+76448942 | MS.gene45820:CDS |
TTTGACATTGTAAACCAATG+CGG | 0.728342 | 4.4:+76448534 | MS.gene45820:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTGATTTATCTGTGATTGA+TGG | + | chr4.4:76448813-76448832 | MS.gene45820:CDS | 25.0% |
!!! | GTATTCGTTTTAACATCATT+GGG | - | chr4.4:76448933-76448952 | None:intergenic | 25.0% |
!!! | TGTATTCGTTTTAACATCAT+TGG | - | chr4.4:76448934-76448953 | None:intergenic | 25.0% |
ACAAAAGACAACTTTGTAGT+TGG | - | chr4.4:76448970-76448989 | None:intergenic | 30.0% | |
TTTGACATTGTAAACCAATG+CGG | + | chr4.4:76448534-76448553 | MS.gene45820:CDS | 30.0% | |
! | TGCAACAAAGTATTAAACTG+CGG | + | chr4.4:76448876-76448895 | MS.gene45820:CDS | 30.0% |
AACTTCATCAGGTCGAATTT+GGG | + | chr4.4:76448644-76448663 | MS.gene45820:CDS | 35.0% | |
AATTGTCAAACTGGTGATTG+CGG | + | chr4.4:76448705-76448724 | MS.gene45820:CDS | 35.0% | |
ACTTAACGGTGGAAACAATT+TGG | + | chr4.4:76448785-76448804 | MS.gene45820:CDS | 35.0% | |
CAACTTAGTTCAACCTCTAA+TGG | + | chr4.4:76448852-76448871 | MS.gene45820:CDS | 35.0% | |
CTTACCGAATTCACACTTAA+CGG | + | chr4.4:76448771-76448790 | MS.gene45820:CDS | 35.0% | |
TACTTTGTTGCATCCATTAG+AGG | - | chr4.4:76448868-76448887 | None:intergenic | 35.0% | |
! | CAACAAAGTATTAAACTGCG+GGG | + | chr4.4:76448878-76448897 | MS.gene45820:CDS | 35.0% |
! | GCAACAAAGTATTAAACTGC+GGG | + | chr4.4:76448877-76448896 | MS.gene45820:CDS | 35.0% |
ACTTCATCAGGTCGAATTTG+GGG | + | chr4.4:76448645-76448664 | MS.gene45820:CDS | 40.0% | |
GAACTTCATCAGGTCGAATT+TGG | + | chr4.4:76448643-76448662 | MS.gene45820:CDS | 40.0% | |
GAGGTTGAACTAAGTTGCAT+TGG | - | chr4.4:76448849-76448868 | None:intergenic | 40.0% | |
GGCAATGGTAATTGTCAAAC+TGG | + | chr4.4:76448696-76448715 | MS.gene45820:CDS | 40.0% | |
GTTAAAACGAATACATGCCC+AGG | + | chr4.4:76448939-76448958 | MS.gene45820:CDS | 40.0% | |
TCCACCGTTAAGTGTGAATT+CGG | - | chr4.4:76448778-76448797 | None:intergenic | 40.0% | |
!! | TGGGTTGATGATAAGCATCA+GGG | - | chr4.4:76448914-76448933 | None:intergenic | 40.0% |
!! | TTGGGTTGATGATAAGCATC+AGG | - | chr4.4:76448915-76448934 | None:intergenic | 40.0% |
AAAACGAATACATGCCCAGG+TGG | + | chr4.4:76448942-76448961 | MS.gene45820:CDS | 45.0% | |
ACCGAATTCACACTTAACGG+TGG | + | chr4.4:76448774-76448793 | MS.gene45820:CDS | 45.0% | |
AGTTGGACCAAGGTCAAACA+TGG | + | chr4.4:76448601-76448620 | MS.gene45820:CDS | 45.0% | |
GTGAATTCGGTAAGAGTGAG+CGG | - | chr4.4:76448765-76448784 | None:intergenic | 45.0% | |
TCTCTGCTTGATATCTGCTC+AGG | + | chr4.4:76448503-76448522 | MS.gene45820:CDS | 45.0% | |
! | ACTTTGTAGTTGGTACCACC+TGG | - | chr4.4:76448960-76448979 | None:intergenic | 45.0% |
! | CTTTGTAGTTGGTACCACCT+GGG | - | chr4.4:76448959-76448978 | None:intergenic | 45.0% |
ATCCCAGCTGGAACTTCATC+AGG | + | chr4.4:76448633-76448652 | MS.gene45820:CDS | 50.0% | |
CCAAGGTCAAACATGGACTC+TGG | + | chr4.4:76448608-76448627 | MS.gene45820:CDS | 50.0% | |
CCAGAGTCCATGTTTGACCT+TGG | - | chr4.4:76448611-76448630 | None:intergenic | 50.0% | |
GACCTGATGAAGTTCCAGCT+GGG | - | chr4.4:76448638-76448657 | None:intergenic | 50.0% | |
GTCCTCAGTTGCAGCTTATC+CGG | + | chr4.4:76448732-76448751 | MS.gene45820:CDS | 50.0% | |
TACCGGATAAGCTGCAACTG+AGG | - | chr4.4:76448737-76448756 | None:intergenic | 50.0% | |
TGATATCTGCTCAGGCAGCT+AGG | + | chr4.4:76448511-76448530 | MS.gene45820:CDS | 50.0% | |
TGTCAAACTGGTGATTGCGG+TGG | + | chr4.4:76448708-76448727 | MS.gene45820:CDS | 50.0% | |
! | AAGAGTGAGCGGACTCTTAC+CGG | - | chr4.4:76448754-76448773 | None:intergenic | 50.0% |
AACTGCTGACCTCCACCACT+GGG | - | chr4.4:76448585-76448604 | None:intergenic | 55.0% | |
ACCATTGCCTGAACCGTCGA+AGG | - | chr4.4:76448685-76448704 | None:intergenic | 55.0% | |
ACCTTCGACGGTTCAGGCAA+TGG | + | chr4.4:76448681-76448700 | MS.gene45820:CDS | 55.0% | |
CGAACTGGTTGCACCTTCGA+CGG | + | chr4.4:76448669-76448688 | MS.gene45820:CDS | 55.0% | |
CGACCTGATGAAGTTCCAGC+TGG | - | chr4.4:76448639-76448658 | None:intergenic | 55.0% | |
! | CGTCGAAGGTGCAACCAGTT+CGG | - | chr4.4:76448671-76448690 | None:intergenic | 55.0% |
ACCAATGCGGCTACACCGTG+TGG | + | chr4.4:76448547-76448566 | MS.gene45820:CDS | 60.0% | |
CAACTGCTGACCTCCACCAC+TGG | - | chr4.4:76448586-76448605 | None:intergenic | 60.0% | |
GGAGGTCAGCAGTTGGACCA+AGG | + | chr4.4:76448591-76448610 | MS.gene45820:CDS | 60.0% | |
GGTTGCACCTTCGACGGTTC+AGG | + | chr4.4:76448675-76448694 | MS.gene45820:CDS | 60.0% | |
TGGACTCTGGACATCCCAGC+TGG | + | chr4.4:76448621-76448640 | MS.gene45820:CDS | 60.0% | |
! | CAGTGGTGGAGGTCAGCAGT+TGG | + | chr4.4:76448584-76448603 | MS.gene45820:CDS | 60.0% |
! | GGTCGAATTTGGGGCCGAAC+TGG | + | chr4.4:76448654-76448673 | MS.gene45820:CDS | 60.0% |
CTGACCTCCACCACTGGGTG+TGG | - | chr4.4:76448580-76448599 | None:intergenic | 65.0% | |
GCCACACGGTGTAGCCGCAT+TGG | - | chr4.4:76448551-76448570 | None:intergenic | 65.0% | |
CGGCTACACCGTGTGGCCAG+CGG | + | chr4.4:76448554-76448573 | MS.gene45820:CDS | 70.0% | |
CCACCACTGGGTGTGGCCGC+TGG | - | chr4.4:76448573-76448592 | None:intergenic | 75.0% | |
CCAGCGGCCACACCCAGTGG+TGG | + | chr4.4:76448570-76448589 | MS.gene45820:CDS | 75.0% | |
GCGGCCACACCCAGTGGTGG+AGG | + | chr4.4:76448573-76448592 | MS.gene45820:CDS | 75.0% | |
GGGTGTGGCCGCTGGCCACA+CGG | - | chr4.4:76448565-76448584 | None:intergenic | 75.0% | |
TGGCCAGCGGCCACACCCAG+TGG | + | chr4.4:76448567-76448586 | MS.gene45820:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 76448495 | 76448995 | 76448495 | ID=MS.gene45820 |
chr4.4 | mRNA | 76448495 | 76448995 | 76448495 | ID=MS.gene45820.t1;Parent=MS.gene45820 |
chr4.4 | exon | 76448495 | 76448995 | 76448495 | ID=MS.gene45820.t1.exon1;Parent=MS.gene45820.t1 |
chr4.4 | CDS | 76448495 | 76448995 | 76448495 | ID=cds.MS.gene45820.t1;Parent=MS.gene45820.t1 |
Gene Sequence |
Protein sequence |