Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45861.t1 | XP_003589014.1 | 90.1 | 322 | 31 | 1 | 1 | 322 | 1 | 321 | 2.00E-163 | 585.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45861.t1 | Q9FFJ8 | 25.3 | 308 | 210 | 5 | 15 | 322 | 160 | 447 | 1.0e-19 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45861.t1 | G7IB81 | 90.1 | 322 | 31 | 1 | 1 | 322 | 1 | 321 | 1.4e-163 | 585.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene45861 | 0.813092 | 3.05E-51 | -1.69E-46 |
| MS.gene056272 | MS.gene45861 | 0.929065 | 1.19E-92 | -1.69E-46 |
| MS.gene058008 | MS.gene45861 | 0.816807 | 4.57E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45861.t1 | MTR_1g016370 | 92.236 | 322 | 24 | 1 | 1 | 322 | 1 | 321 | 0.0 | 606 |
| MS.gene45861.t1 | MTR_4g061370 | 88.199 | 322 | 19 | 2 | 1 | 322 | 1013 | 1315 | 0.0 | 553 |
| MS.gene45861.t1 | MTR_5g055390 | 77.124 | 306 | 26 | 2 | 17 | 322 | 20 | 281 | 1.33e-161 | 452 |
| MS.gene45861.t1 | MTR_8g054100 | 90.756 | 238 | 18 | 1 | 1 | 238 | 1 | 234 | 1.17e-148 | 418 |
| MS.gene45861.t1 | MTR_2g018710 | 62.963 | 324 | 114 | 4 | 2 | 321 | 1 | 322 | 8.02e-144 | 409 |
| MS.gene45861.t1 | MTR_2g086350 | 62.654 | 324 | 115 | 4 | 2 | 321 | 1 | 322 | 1.81e-142 | 405 |
| MS.gene45861.t1 | MTR_1g080080 | 62.346 | 324 | 116 | 4 | 2 | 321 | 1 | 322 | 2.16e-142 | 405 |
| MS.gene45861.t1 | MTR_3g110155 | 57.012 | 328 | 134 | 2 | 1 | 321 | 1 | 328 | 8.25e-130 | 374 |
| MS.gene45861.t1 | MTR_8g006585 | 57.012 | 328 | 134 | 2 | 1 | 321 | 1 | 328 | 8.25e-130 | 374 |
| MS.gene45861.t1 | MTR_8g006695 | 57.012 | 328 | 134 | 2 | 1 | 321 | 1 | 328 | 8.25e-130 | 374 |
| MS.gene45861.t1 | MTR_5g054570 | 58.951 | 324 | 109 | 5 | 2 | 321 | 1 | 304 | 9.15e-129 | 370 |
| MS.gene45861.t1 | MTR_2g435870 | 55.556 | 306 | 111 | 3 | 19 | 321 | 5 | 288 | 2.97e-117 | 340 |
| MS.gene45861.t1 | MTR_4g046743 | 51.084 | 323 | 105 | 5 | 2 | 321 | 1 | 273 | 2.66e-101 | 299 |
| MS.gene45861.t1 | MTR_2g054730 | 86.620 | 142 | 19 | 0 | 181 | 322 | 11 | 152 | 1.40e-79 | 239 |
| MS.gene45861.t1 | MTR_2g436180 | 48.684 | 228 | 77 | 3 | 100 | 321 | 1 | 194 | 1.43e-62 | 197 |
| MS.gene45861.t1 | MTR_7g029320 | 44.487 | 263 | 85 | 6 | 2 | 261 | 1 | 205 | 9.27e-60 | 191 |
| MS.gene45861.t1 | MTR_3g023200 | 85.882 | 85 | 12 | 0 | 1 | 85 | 1 | 85 | 1.87e-46 | 152 |
| MS.gene45861.t1 | MTR_2g436540 | 41.176 | 221 | 112 | 6 | 119 | 321 | 10 | 230 | 7.90e-44 | 150 |
| MS.gene45861.t1 | MTR_3g448480 | 49.686 | 159 | 48 | 4 | 9 | 164 | 8 | 137 | 1.03e-39 | 137 |
| MS.gene45861.t1 | MTR_0961s0020 | 70.930 | 86 | 22 | 2 | 122 | 206 | 5 | 88 | 4.53e-32 | 115 |
| MS.gene45861.t1 | MTR_1g073440 | 39.437 | 142 | 85 | 1 | 21 | 161 | 15 | 156 | 4.28e-30 | 117 |
| MS.gene45861.t1 | MTR_4g043620 | 38.750 | 160 | 94 | 2 | 2 | 161 | 1 | 156 | 5.61e-29 | 113 |
| MS.gene45861.t1 | MTR_8g105430 | 34.595 | 185 | 107 | 3 | 12 | 183 | 31 | 214 | 2.02e-28 | 110 |
| MS.gene45861.t1 | MTR_5g018260 | 29.114 | 316 | 194 | 9 | 22 | 315 | 16 | 323 | 7.20e-27 | 108 |
| MS.gene45861.t1 | MTR_8g468830 | 28.571 | 315 | 196 | 9 | 21 | 319 | 14 | 315 | 1.04e-26 | 107 |
| MS.gene45861.t1 | MTR_8g069895 | 34.884 | 172 | 108 | 2 | 2 | 173 | 1 | 168 | 9.41e-26 | 104 |
| MS.gene45861.t1 | MTR_3g070080 | 38.158 | 152 | 85 | 2 | 22 | 173 | 248 | 390 | 2.74e-25 | 106 |
| MS.gene45861.t1 | MTR_3g070080 | 28.479 | 309 | 159 | 8 | 12 | 311 | 436 | 691 | 3.74e-25 | 106 |
| MS.gene45861.t1 | MTR_3g070080 | 36.567 | 134 | 78 | 2 | 11 | 144 | 66 | 192 | 2.97e-18 | 85.9 |
| MS.gene45861.t1 | MTR_3g070080 | 38.158 | 152 | 85 | 2 | 22 | 173 | 185 | 327 | 3.15e-25 | 106 |
| MS.gene45861.t1 | MTR_3g070080 | 28.479 | 309 | 159 | 8 | 12 | 311 | 373 | 628 | 5.30e-25 | 105 |
| MS.gene45861.t1 | MTR_3g070080 | 36.567 | 134 | 78 | 2 | 11 | 144 | 3 | 129 | 4.06e-18 | 85.5 |
| MS.gene45861.t1 | MTR_5g022570 | 29.000 | 300 | 181 | 8 | 19 | 312 | 17 | 290 | 3.26e-24 | 100 |
| MS.gene45861.t1 | MTR_2g021280 | 34.375 | 160 | 101 | 2 | 2 | 161 | 1 | 156 | 9.15e-23 | 97.8 |
| MS.gene45861.t1 | MTR_7g056530 | 64.516 | 62 | 22 | 0 | 103 | 164 | 28 | 89 | 9.17e-22 | 89.0 |
| MS.gene45861.t1 | MTR_4g045750 | 59.259 | 81 | 30 | 2 | 138 | 217 | 60 | 138 | 1.39e-20 | 86.7 |
| MS.gene45861.t1 | MTR_7g034425 | 53.247 | 77 | 35 | 1 | 12 | 87 | 85 | 161 | 4.66e-20 | 85.9 |
| MS.gene45861.t1 | MTR_0693s0050 | 39.189 | 148 | 78 | 5 | 18 | 158 | 5 | 147 | 8.40e-20 | 87.4 |
| MS.gene45861.t1 | MTR_1g055365 | 30.147 | 136 | 94 | 1 | 21 | 156 | 21 | 155 | 7.60e-16 | 78.6 |
| MS.gene45861.t1 | MTR_1g055365 | 29.655 | 145 | 99 | 2 | 2 | 146 | 175 | 316 | 3.28e-15 | 76.6 |
| MS.gene45861.t1 | MTR_4g029080 | 41.975 | 81 | 47 | 0 | 81 | 161 | 2 | 82 | 5.16e-15 | 70.1 |
| MS.gene45861.t1 | MTR_7g105890 | 37.391 | 115 | 61 | 4 | 18 | 127 | 5 | 113 | 4.83e-14 | 72.4 |
| MS.gene45861.t1 | MTR_8g446440 | 25.882 | 255 | 150 | 10 | 81 | 319 | 2 | 233 | 6.10e-14 | 70.5 |
| MS.gene45861.t1 | MTR_4g128540 | 37.391 | 115 | 61 | 4 | 18 | 127 | 5 | 113 | 9.12e-14 | 71.6 |
| MS.gene45861.t1 | MTR_8g085310 | 24.579 | 297 | 189 | 9 | 25 | 310 | 434 | 706 | 2.71e-13 | 70.9 |
| MS.gene45861.t1 | MTR_4g128327 | 39.796 | 98 | 49 | 3 | 27 | 119 | 14 | 106 | 3.82e-13 | 65.9 |
| MS.gene45861.t1 | MTR_3g053640 | 25.256 | 293 | 168 | 10 | 25 | 310 | 182 | 430 | 1.37e-12 | 68.6 |
| MS.gene45861.t1 | MTR_4g092300 | 24.590 | 305 | 175 | 11 | 25 | 310 | 556 | 824 | 3.40e-12 | 67.8 |
| MS.gene45861.t1 | MTR_4g051480 | 24.590 | 305 | 175 | 11 | 25 | 310 | 574 | 842 | 3.89e-12 | 67.4 |
| MS.gene45861.t1 | MTR_1g024830 | 22.772 | 303 | 204 | 8 | 19 | 311 | 59 | 341 | 4.99e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45861.t1 | AT5G05800 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 7.92e-24 | 101 |
| MS.gene45861.t1 | AT5G05800 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.07e-16 | 80.1 |
| MS.gene45861.t1 | AT5G05800 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 7.92e-24 | 101 |
| MS.gene45861.t1 | AT5G05800 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.07e-16 | 80.1 |
| MS.gene45861.t1 | AT5G05800 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 7.92e-24 | 101 |
| MS.gene45861.t1 | AT5G05800 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.07e-16 | 80.1 |
| MS.gene45861.t1 | AT5G05800 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 7.92e-24 | 101 |
| MS.gene45861.t1 | AT5G05800 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.07e-16 | 80.1 |
| MS.gene45861.t1 | AT5G05800 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 7.92e-24 | 101 |
| MS.gene45861.t1 | AT5G05800 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.07e-16 | 80.1 |
| MS.gene45861.t1 | AT3G11290 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 9.61e-19 | 87.0 |
| MS.gene45861.t1 | AT3G11290 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 9.61e-19 | 87.0 |
| MS.gene45861.t1 | AT2G24960 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 1.96e-15 | 77.8 |
| MS.gene45861.t1 | AT2G24960 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 9.54e-11 | 63.2 |
| MS.gene45861.t1 | AT2G24960 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 2.60e-15 | 77.4 |
| MS.gene45861.t1 | AT2G24960 | 27.273 | 143 | 103 | 1 | 12 | 154 | 314 | 455 | 5.38e-12 | 67.0 |
| MS.gene45861.t1 | AT3G11310 | 33.566 | 143 | 89 | 2 | 20 | 157 | 171 | 312 | 5.24e-13 | 70.1 |
| MS.gene45861.t1 | AT2G19220 | 26.019 | 319 | 198 | 12 | 9 | 317 | 149 | 439 | 2.53e-11 | 64.7 |
| MS.gene45861.t1 | AT4G02210 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 7.54e-11 | 63.2 |
| MS.gene45861.t1 | AT4G02210 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 7.54e-11 | 63.2 |
Find 73 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATGGTATAACTTATT+TGG | 0.134716 | 4.4:-75605661 | MS.gene45861:CDS |
| ACAACTGAATTTGGAAATAT+TGG | 0.148866 | 4.4:-75605258 | MS.gene45861:CDS |
| GTTGGAGCAACAACTGAATT+TGG | 0.213211 | 4.4:-75605267 | MS.gene45861:CDS |
| GGCAGAAAACAAAAGCTAAT+TGG | 0.275009 | 4.4:-75605870 | MS.gene45861:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 4.4:-75605649 | MS.gene45861:CDS |
| GTCCGATTTCATAATTTAAC+AGG | 0.296173 | 4.4:-75605742 | MS.gene45861:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 4.4:-75605642 | MS.gene45861:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 4.4:-75605643 | MS.gene45861:CDS |
| GAAATAAACATCTCCCTTGC+AGG | 0.323302 | 4.4:+75604967 | None:intergenic |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 4.4:-75605830 | MS.gene45861:CDS |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 4.4:+75605570 | None:intergenic |
| CAACTGAATTTGGAAATATT+GGG | 0.356640 | 4.4:-75605257 | MS.gene45861:CDS |
| GAGCATGGTATAACTTATTT+GGG | 0.363157 | 4.4:-75605660 | MS.gene45861:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 4.4:-75605408 | MS.gene45861:CDS |
| GTCCTGTTAAATTATGAAAT+CGG | 0.371823 | 4.4:+75605740 | None:intergenic |
| CAGAGGAGAAGAGGTTGAAT+TGG | 0.373243 | 4.4:-75604933 | MS.gene45861:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 4.4:+75605589 | None:intergenic |
| GCAGAAAACAAAAGCTAATT+GGG | 0.414370 | 4.4:-75605869 | MS.gene45861:CDS |
| GTTCCTCCTCACCTAGTGAT+GGG | 0.415978 | 4.4:-75605894 | MS.gene45861:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.420206 | 4.4:+75605428 | None:intergenic |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 4.4:-75605764 | MS.gene45861:CDS |
| GGTTCCTCCTCACCTAGTGA+TGG | 0.438340 | 4.4:-75605895 | MS.gene45861:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.476214 | 4.4:-75605893 | MS.gene45861:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 4.4:-75605708 | MS.gene45861:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.484199 | 4.4:-75605892 | MS.gene45861:CDS |
| GCTGCGGGTAATGCATCTAT+TGG | 0.495551 | 4.4:-75605078 | MS.gene45861:CDS |
| GATGAGGCAGTGGCTGTAGA+AGG | 0.502147 | 4.4:-75605315 | MS.gene45861:CDS |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 4.4:+75605798 | None:intergenic |
| TGCTGATGTTTAAGCCTGCA+AGG | 0.517021 | 4.4:-75604981 | MS.gene45861:CDS |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 4.4:-75605395 | MS.gene45861:CDS |
| GCAGTGGCTGTAGAAGGATC+TGG | 0.527670 | 4.4:-75605309 | MS.gene45861:CDS |
| ATGACAGTCTGAGAAAGGAT+TGG | 0.531322 | 4.4:-75605684 | MS.gene45861:CDS |
| CTTCTCCTCTGAACCTCGTA+GGG | 0.535159 | 4.4:+75604945 | None:intergenic |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 4.4:-75605581 | MS.gene45861:intron |
| AGGTTAGTCATGAACGGCAG+TGG | 0.537233 | 4.4:+75604889 | None:intergenic |
| TAGGTATGACAGTCTGAGAA+AGG | 0.543958 | 4.4:-75605689 | MS.gene45861:CDS |
| TATTTCCCTACGAGGTTCAG+AGG | 0.555424 | 4.4:-75604950 | MS.gene45861:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 4.4:-75605639 | MS.gene45861:CDS |
| ATCATTTGAGACTTCATCCA+TGG | 0.558263 | 4.4:+75605032 | None:intergenic |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 4.4:-75605209 | MS.gene45861:CDS |
| CATGACTAACCTGTGTGACT+AGG | 0.562786 | 4.4:-75604878 | None:intergenic |
| TACGAGGTTCAGAGGAGAAG+AGG | 0.567800 | 4.4:-75604942 | MS.gene45861:CDS |
| CGTTCTCGCAATGATGCTGC+GGG | 0.569360 | 4.4:-75605093 | MS.gene45861:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 4.4:-75605815 | MS.gene45861:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 4.4:-75605381 | MS.gene45861:CDS |
| TCGTTCTCGCAATGATGCTG+CGG | 0.583184 | 4.4:-75605094 | MS.gene45861:CDS |
| TGCATCTATTGGTGAAGTGA+TGG | 0.591393 | 4.4:-75605067 | MS.gene45861:CDS |
| GCTGATGTTTAAGCCTGCAA+GGG | 0.594722 | 4.4:-75604980 | MS.gene45861:CDS |
| TCTTCTCCTCTGAACCTCGT+AGG | 0.595412 | 4.4:+75604944 | None:intergenic |
| GATAGCGAGGATGCAAGTGT+TGG | 0.599986 | 4.4:-75605285 | MS.gene45861:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 4.4:+75605369 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.608278 | 4.4:-75605891 | MS.gene45861:CDS |
| TGAGAAAGGATTGGAGAGCA+TGG | 0.612846 | 4.4:-75605675 | MS.gene45861:CDS |
| GCTACAACAGTGTTGTTCAC+AGG | 0.614063 | 4.4:+75605613 | None:intergenic |
| GTGGTTAACTCATTGGCGAA+TGG | 0.617203 | 4.4:+75605435 | None:intergenic |
| AACAGGACTGAAGTATGAGA+AGG | 0.624534 | 4.4:-75605725 | MS.gene45861:CDS |
| AGAAGGATCTGGCGATAGCG+AGG | 0.624952 | 4.4:-75605298 | MS.gene45861:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 4.4:-75605380 | MS.gene45861:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 4.4:+75605416 | None:intergenic |
| GGTTAGTCATGAACGGCAGT+GGG | 0.628971 | 4.4:+75604890 | None:intergenic |
| AAAACTGATGGTCAAAAGAG+TGG | 0.632803 | 4.4:-75605219 | MS.gene45861:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 4.4:-75605597 | MS.gene45861:CDS |
| TCACACAGGTTAGTCATGAA+CGG | 0.640237 | 4.4:+75604883 | None:intergenic |
| CCATTACATCCTAGTCACAC+AGG | 0.643132 | 4.4:+75604869 | None:intergenic |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 4.4:-75605638 | MS.gene45861:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 4.4:-75605802 | MS.gene45861:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 4.4:-75605379 | MS.gene45861:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 4.4:-75605814 | MS.gene45861:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 4.4:-75605596 | MS.gene45861:CDS |
| GATGGCTGAGCTTCACACCA+TGG | 0.663371 | 4.4:-75605049 | MS.gene45861:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 4.4:-75605394 | MS.gene45861:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 4.4:-75605600 | MS.gene45861:CDS |
| GAGATGTTTATTTCCCTACG+AGG | 0.736446 | 4.4:-75604958 | MS.gene45861:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAAAATTTAGGAACAA+GGG | - | chr4.4:75605339-75605358 | MS.gene45861:CDS | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | - | chr4.4:75605338-75605357 | MS.gene45861:CDS | 20.0% |
| !!! | TCCTAAATTTTTCATAAAGA+GGG | + | chr4.4:75605335-75605354 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | + | chr4.4:75605336-75605355 | None:intergenic | 20.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | - | chr4.4:75604885-75604904 | MS.gene45861:CDS | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | - | chr4.4:75605570-75605589 | MS.gene45861:intron | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | - | chr4.4:75605543-75605562 | MS.gene45861:intron | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | - | chr4.4:75605331-75605350 | MS.gene45861:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | - | chr4.4:75605340-75605359 | MS.gene45861:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | - | chr4.4:75605544-75605563 | MS.gene45861:intron | 25.0% |
| ! | GTCCTGTTAAATTATGAAAT+CGG | + | chr4.4:75605064-75605083 | None:intergenic | 25.0% |
| AAAAAGGGTGGACAAATATT+AGG | - | chr4.4:75605036-75605055 | MS.gene45861:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | - | chr4.4:75605037-75605056 | MS.gene45861:CDS | 30.0% | |
| AACACGAGTATACATATCTA+AGG | + | chr4.4:75605277-75605296 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | - | chr4.4:75605140-75605159 | MS.gene45861:CDS | 30.0% | |
| GAATACCAAGAAAAATGTTG+TGG | - | chr4.4:75604884-75604903 | MS.gene45861:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | - | chr4.4:75605141-75605160 | MS.gene45861:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | - | chr4.4:75604932-75604951 | MS.gene45861:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+AGG | - | chr4.4:75605059-75605078 | MS.gene45861:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | + | chr4.4:75605234-75605253 | None:intergenic | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | - | chr4.4:75604971-75604990 | MS.gene45861:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | - | chr4.4:75605021-75605040 | MS.gene45861:CDS | 30.0% |
| ! | TCATCATTTTCAAACACAGA+TGG | + | chr4.4:75605453-75605472 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | - | chr4.4:75605470-75605489 | MS.gene45861:CDS | 30.0% |
| AAAACTGATGGTCAAAAGAG+TGG | - | chr4.4:75605582-75605601 | MS.gene45861:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | - | chr4.4:75605152-75605171 | MS.gene45861:CDS | 35.0% | |
| AGAAGGCTCAACTAAAGAAT+AGG | - | chr4.4:75605093-75605112 | MS.gene45861:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | - | chr4.4:75605305-75605324 | MS.gene45861:CDS | 35.0% | |
| GGCAGAAAACAAAAGCTAAT+TGG | - | chr4.4:75604931-75604950 | MS.gene45861:CDS | 35.0% | |
| ! | ATCATTTGAGACTTCATCCA+TGG | + | chr4.4:75605772-75605791 | None:intergenic | 35.0% |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | + | chr4.4:75605376-75605395 | None:intergenic | 35.0% |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | - | chr4.4:75605020-75605039 | MS.gene45861:CDS | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | - | chr4.4:75605377-75605396 | MS.gene45861:CDS | 35.0% |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | + | chr4.4:75605642-75605661 | None:intergenic | 35.0% |
| AACAGGACTGAAGTATGAGA+AGG | - | chr4.4:75605076-75605095 | MS.gene45861:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | - | chr4.4:75605117-75605136 | MS.gene45861:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | + | chr4.4:75605388-75605407 | None:intergenic | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | + | chr4.4:75605837-75605856 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | - | chr4.4:75605843-75605862 | MS.gene45861:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | - | chr4.4:75605534-75605553 | MS.gene45861:intron | 40.0% | |
| TAGGTATGACAGTCTGAGAA+AGG | - | chr4.4:75605112-75605131 | MS.gene45861:CDS | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | - | chr4.4:75605734-75605753 | MS.gene45861:CDS | 40.0% | |
| TTCAAGGATGTAGTGGCTAA+TGG | - | chr4.4:75605393-75605412 | MS.gene45861:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | - | chr4.4:75605159-75605178 | MS.gene45861:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | - | chr4.4:75605158-75605177 | MS.gene45861:CDS | 40.0% | |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | - | chr4.4:75605024-75605043 | MS.gene45861:CDS | 40.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | + | chr4.4:75604892-75604911 | None:intergenic | 40.0% |
| ! | TCACACAGGTTAGTCATGAA+CGG | + | chr4.4:75605921-75605940 | None:intergenic | 40.0% |
| !! | CACACTTTTCAAGGATGTAG+TGG | - | chr4.4:75605386-75605405 | MS.gene45861:CDS | 40.0% |
| CAGAGGAGAAGAGGTTGAAT+TGG | - | chr4.4:75605868-75605887 | MS.gene45861:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | - | chr4.4:75605821-75605840 | MS.gene45861:CDS | 45.0% | |
| GTCAAAAGAGTGGTGAGAAG+AGG | - | chr4.4:75605592-75605611 | MS.gene45861:CDS | 45.0% | |
| GTGGTTAACTCATTGGCGAA+TGG | + | chr4.4:75605369-75605388 | None:intergenic | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | - | chr4.4:75605851-75605870 | MS.gene45861:CDS | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | - | chr4.4:75605126-75605145 | MS.gene45861:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | - | chr4.4:75605820-75605839 | MS.gene45861:CDS | 45.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | - | chr4.4:75604986-75605005 | MS.gene45861:CDS | 45.0% |
| ! | GAGAGAAACTGGATTAGGGT+GGG | - | chr4.4:75605163-75605182 | MS.gene45861:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | + | chr4.4:75605191-75605210 | None:intergenic | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | - | chr4.4:75605407-75605426 | MS.gene45861:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | - | chr4.4:75605476-75605495 | MS.gene45861:CDS | 45.0% |
| ! | TGGCTAATGGAGAGTACACT+TGG | - | chr4.4:75605406-75605425 | MS.gene45861:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | - | chr4.4:75604987-75605006 | MS.gene45861:CDS | 45.0% |
| ACACTTGGGCACCATCATGT+GGG | - | chr4.4:75605421-75605440 | MS.gene45861:CDS | 50.0% | |
| CTGTTGTAGCACCTGATGAG+TGG | - | chr4.4:75605201-75605220 | MS.gene45861:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | + | chr4.4:75605859-75605878 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | - | chr4.4:75605516-75605535 | MS.gene45861:intron | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | + | chr4.4:75605435-75605454 | None:intergenic | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | - | chr4.4:75605723-75605742 | MS.gene45861:CDS | 50.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | - | chr4.4:75604907-75604926 | MS.gene45861:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | - | chr4.4:75605420-75605439 | MS.gene45861:CDS | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | - | chr4.4:75605859-75605878 | MS.gene45861:CDS | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | - | chr4.4:75605707-75605726 | MS.gene45861:CDS | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | + | chr4.4:75605860-75605879 | None:intergenic | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | - | chr4.4:75605205-75605224 | MS.gene45861:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | - | chr4.4:75604908-75604927 | MS.gene45861:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | - | chr4.4:75605204-75605223 | MS.gene45861:CDS | 50.0% | |
| ! | AGGTTAGTCATGAACGGCAG+TGG | + | chr4.4:75605915-75605934 | None:intergenic | 50.0% |
| ! | GGAGAGAAACTGGATTAGGG+TGG | - | chr4.4:75605162-75605181 | MS.gene45861:CDS | 50.0% |
| ! | GGTTAGTCATGAACGGCAGT+GGG | + | chr4.4:75605914-75605933 | None:intergenic | 50.0% |
| AGAAGGATCTGGCGATAGCG+AGG | - | chr4.4:75605503-75605522 | MS.gene45861:intron | 55.0% | |
| CACTTGGGCACCATCATGTG+GGG | - | chr4.4:75605422-75605441 | MS.gene45861:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | + | chr4.4:75605006-75605025 | None:intergenic | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | - | chr4.4:75605708-75605727 | MS.gene45861:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | - | chr4.4:75605486-75605505 | MS.gene45861:intron | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | - | chr4.4:75605752-75605771 | MS.gene45861:CDS | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | - | chr4.4:75605492-75605511 | MS.gene45861:intron | 55.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | - | chr4.4:75604906-75604925 | MS.gene45861:CDS | 55.0% | |
| GTCTCCAAGGGAGAACGTGT+TGG | - | chr4.4:75604999-75605018 | MS.gene45861:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | - | chr4.4:75604909-75604928 | MS.gene45861:CDS | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | + | chr4.4:75605215-75605234 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | - | chr4.4:75605220-75605239 | MS.gene45861:CDS | 55.0% |
| ! | GTTTTCTGCCCCCCATCACT+AGG | + | chr4.4:75604921-75604940 | None:intergenic | 55.0% |
| ! | CCTCCTCACCTAGTGATGGG+GGG | - | chr4.4:75604910-75604929 | MS.gene45861:CDS | 60.0% |
| CCCCCCATCACTAGGTGAGG+AGG | + | chr4.4:75604913-75604932 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | + | chr4.4:75604916-75604935 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 75604879 | 75605944 | 75604879 | ID=MS.gene45861 |
| chr4.4 | mRNA | 75604879 | 75605944 | 75604879 | ID=MS.gene45861.t1;Parent=MS.gene45861 |
| chr4.4 | exon | 75605582 | 75605944 | 75605582 | ID=MS.gene45861.t1.exon1;Parent=MS.gene45861.t1 |
| chr4.4 | CDS | 75605582 | 75605944 | 75605582 | ID=cds.MS.gene45861.t1;Parent=MS.gene45861.t1 |
| chr4.4 | exon | 75604879 | 75605496 | 75604879 | ID=MS.gene45861.t1.exon2;Parent=MS.gene45861.t1 |
| chr4.4 | CDS | 75604879 | 75605496 | 75604879 | ID=cds.MS.gene45861.t1;Parent=MS.gene45861.t1 |
| Gene Sequence |
| Protein sequence |
