Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46190.t1 | XP_003616736.1 | 96.6 | 327 | 9 | 2 | 1 | 326 | 1 | 326 | 3.10E-180 | 641 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46190.t1 | F4IH31 | 67.7 | 331 | 100 | 2 | 1 | 325 | 1 | 330 | 1.5e-127 | 457.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46190.t1 | G7K7B4 | 96.6 | 327 | 9 | 2 | 1 | 326 | 1 | 326 | 2.2e-180 | 641.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054468 | MS.gene46190 | 0.802002 | 6.90E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene46190 | 0.813942 | 1.98E-51 | -1.69E-46 |
| MS.gene060373 | MS.gene46190 | 0.801355 | 9.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46190.t1 | MTR_5g083730 | 96.636 | 327 | 9 | 2 | 1 | 326 | 1 | 326 | 0.0 | 649 |
| MS.gene46190.t1 | MTR_5g083720 | 92.331 | 326 | 25 | 0 | 1 | 326 | 1 | 326 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46190.t1 | AT2G40410 | 67.674 | 331 | 100 | 2 | 1 | 325 | 1 | 330 | 1.69e-166 | 466 |
| MS.gene46190.t1 | AT3G56170 | 64.615 | 325 | 110 | 2 | 1 | 325 | 1 | 320 | 8.90e-153 | 431 |
| MS.gene46190.t1 | AT2G40410 | 64.159 | 226 | 74 | 2 | 1 | 220 | 1 | 225 | 5.32e-101 | 296 |
Find 0 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAATATAGAATAAAAAC+AGG | - | 38030:12393-12412 | MS.gene46190:intron | 15.0% |
| !! | TACAAATAGTTATCAAATAA+CGG | - | 38030:11370-11389 | MS.gene46190:CDS | 15.0% |
| !! | TGAAATATAGAATAAAAACA+GGG | - | 38030:12394-12413 | MS.gene46190:intron | 15.0% |
| !!! | TTATATTGTTTTGAATTTGA+AGG | - | 38030:10884-10903 | MS.gene46190:CDS | 15.0% |
| !!! | TTTAATTTCAGATACTAAAA+CGG | - | 38030:11671-11690 | MS.gene46190:intron | 15.0% |
| !! | AACTTCAATTCTACTTAATT+TGG | - | 38030:11038-11057 | MS.gene46190:intron | 20.0% |
| !! | AATTAAGTAGAATTGAAGTT+TGG | + | 38030:11038-11057 | MS.gene46190:intergenic | 20.0% |
| !! | ATCATCAATTCATCATAAAA+GGG | + | 38030:11920-11939 | MS.gene46190:intergenic | 20.0% |
| !! | ATGCTTATAATTTAACAAGA+GGG | + | 38030:11702-11721 | MS.gene46190:intergenic | 20.0% |
| !! | GAAATATAGAATAAAAACAG+GGG | - | 38030:12395-12414 | MS.gene46190:CDS | 20.0% |
| !! | TATGCTTATAATTTAACAAG+AGG | + | 38030:11703-11722 | MS.gene46190:intergenic | 20.0% |
| !!! | GTTGATTTCTTTTTATGATA+AGG | - | 38030:12641-12660 | MS.gene46190:intron | 20.0% |
| !!! | GTTTTAGTATCTGAAATTAA+AGG | + | 38030:11672-11691 | MS.gene46190:intergenic | 20.0% |
| !!! | GTTTTGTTGTTTGATTTATA+GGG | - | 38030:11127-11146 | MS.gene46190:CDS | 20.0% |
| !!! | TCTGAAATTAAAGGATAATT+TGG | + | 38030:11663-11682 | MS.gene46190:intergenic | 20.0% |
| !!! | TGTTTTGTTGTTTGATTTAT+AGG | - | 38030:11126-11145 | MS.gene46190:CDS | 20.0% |
| ! | AAAAACAAAATAGGTTACCT+GGG | + | 38030:10600-10619 | MS.gene46190:intergenic | 25.0% |
| ! | AGGATGATTCTATTTGAAAA+CGG | - | 38030:12261-12280 | MS.gene46190:intron | 25.0% |
| ! | AGGTATAGAAAGTTAATAGA+TGG | - | 38030:10904-10923 | MS.gene46190:CDS | 25.0% |
| ! | ATAGAAAGTTAATAGATGGT+TGG | - | 38030:10908-10927 | MS.gene46190:CDS | 25.0% |
| ! | ATGTGTATGAAAATGCATTT+GGG | - | 38030:12745-12764 | MS.gene46190:intron | 25.0% |
| ! | CATCATCAATTCATCATAAA+AGG | + | 38030:11921-11940 | MS.gene46190:intergenic | 25.0% |
| ! | GATAGTAATTTGAATCTTAC+TGG | + | 38030:11262-11281 | MS.gene46190:intergenic | 25.0% |
| ! | TATATGCACATGTTACAAAA+TGG | + | 38030:10665-10684 | MS.gene46190:intergenic | 25.0% |
| ! | TGTAAGAACATAAGAAAGTT+AGG | + | 38030:12826-12845 | MS.gene46190:intergenic | 25.0% |
| !! | AAATCCTAGCTAAAAAGTAT+CGG | - | 38030:12286-12305 | MS.gene46190:intron | 25.0% |
| !! | AATTGTGTATTTGGTTTAAC+GGG | - | 38030:12783-12802 | MS.gene46190:intron | 25.0% |
| !! | GAATTGTGTATTTGGTTTAA+CGG | - | 38030:12782-12801 | MS.gene46190:intron | 25.0% |
| !! | TGGTAAAAAGAGTAGAATTT+TGG | + | 38030:10636-10655 | MS.gene46190:intergenic | 25.0% |
| !! | TTGTAATAACGTTTTTGTAC+AGG | - | 38030:12553-12572 | MS.gene46190:intron | 25.0% |
| !! | TTTGAGGTGAAAAACAAAAT+AGG | + | 38030:10609-10628 | MS.gene46190:intergenic | 25.0% |
| !!! | ATTATGATGAATTGATGATG+AGG | - | 38030:11722-11741 | MS.gene46190:intron | 25.0% |
| !!! | TTATGATGAATTGATGATGA+GGG | - | 38030:11723-11742 | MS.gene46190:intron | 25.0% |
| AAACGCATGAATTGTGTATT+TGG | - | 38030:12774-12793 | MS.gene46190:intron | 30.0% | |
| AAGGAATTGATGCTAAAGAA+GGG | - | 38030:12660-12679 | MS.gene46190:CDS | 30.0% | |
| ACTGATCTTCTCCATAAATA+AGG | + | 38030:12508-12527 | MS.gene46190:intergenic | 30.0% | |
| ATAAACGAGTTTGTGATCAA+TGG | - | 38030:11603-11622 | MS.gene46190:intron | 30.0% | |
| ATACACATCATTAGCACTTA+CGG | + | 38030:12733-12752 | MS.gene46190:intergenic | 30.0% | |
| ATTTCATATTGTACTCCATG+AGG | + | 38030:11229-11248 | MS.gene46190:intergenic | 30.0% | |
| CCATAAAAAAGAAGATGTTG+AGG | - | 38030:10999-11018 | MS.gene46190:intron | 30.0% | |
| CCTAATCAAGAAAAGAACAT+TGG | + | 38030:12244-12263 | MS.gene46190:intergenic | 30.0% | |
| GAAAAACAAAATAGGTTACC+TGG | + | 38030:10601-10620 | MS.gene46190:intergenic | 30.0% | |
| GATGATTCTATTTGAAAACG+GGG | - | 38030:12263-12282 | MS.gene46190:intron | 30.0% | |
| GATGTGTATGAAAATGCATT+TGG | - | 38030:12744-12763 | MS.gene46190:intron | 30.0% | |
| GGATGATTCTATTTGAAAAC+GGG | - | 38030:12262-12281 | MS.gene46190:intron | 30.0% | |
| TAAGGAATTGATGCTAAAGA+AGG | - | 38030:12659-12678 | MS.gene46190:CDS | 30.0% | |
| TAATTTGAATCTTACTGGCA+AGG | + | 38030:11257-11276 | MS.gene46190:intergenic | 30.0% | |
| TCTTATGTTCTTACACTAGT+GGG | - | 38030:12831-12850 | MS.gene46190:CDS | 30.0% | |
| TGTGTATGAAAATGCATTTG+GGG | - | 38030:12746-12765 | MS.gene46190:intron | 30.0% | |
| TTCTTATGTTCTTACACTAG+TGG | - | 38030:12830-12849 | MS.gene46190:CDS | 30.0% | |
| TTGTCTTGTCTGTTCAAATT+CGG | + | 38030:11327-11346 | MS.gene46190:intergenic | 30.0% | |
| ! | ATTGTGTATTTGGTTTAACG+GGG | - | 38030:12784-12803 | MS.gene46190:intron | 30.0% |
| ! | CCAATGTTCTTTTCTTGATT+AGG | - | 38030:12241-12260 | MS.gene46190:CDS | 30.0% |
| ! | TCTTTGAGAGTCCTTATTTA+TGG | - | 38030:12494-12513 | MS.gene46190:intron | 30.0% |
| !! | ATGAATTGATGATGAACATG+TGG | - | 38030:11927-11946 | MS.gene46190:intron | 30.0% |
| !! | CTTGTTATTCTGACATTGAA+AGG | - | 38030:10976-10995 | MS.gene46190:CDS | 30.0% |
| !! | GTAGAATTTTGGTAAGTTTG+AGG | + | 38030:10625-10644 | MS.gene46190:intergenic | 30.0% |
| !! | TATGATGAATTGATGATGAG+GGG | - | 38030:11724-11743 | MS.gene46190:intron | 30.0% |
| !!! | AATCTTTTTTAGGTTCCTGA+AGG | - | 38030:10700-10719 | MS.gene46190:CDS | 30.0% |
| !!! | CCTCAACATCTTCTTTTTTA+TGG | + | 38030:11002-11021 | MS.gene46190:intergenic | 30.0% |
| !!! | TGATTCATCGATTTTGCAAT+TGG | - | 38030:11959-11978 | MS.gene46190:intron | 30.0% |
| !!! | TGCAGTTTTAGAGACTAAAT+AGG | + | 38030:11467-11486 | MS.gene46190:intergenic | 30.0% |
| AACTGACCAAGATTGTTCAA+GGG | - | 38030:12468-12487 | MS.gene46190:CDS | 35.0% | |
| ACAGTGCATACAAATCAATC+TGG | + | 38030:10839-10858 | MS.gene46190:intergenic | 35.0% | |
| AGATTTCCCTTGAACAATCT+TGG | + | 38030:12477-12496 | MS.gene46190:intergenic | 35.0% | |
| ATGCACATGTTACAAAATGG+TGG | + | 38030:10662-10681 | MS.gene46190:intergenic | 35.0% | |
| GAACAGACAAGACAACTATT+CGG | - | 38030:11332-11351 | MS.gene46190:CDS | 35.0% | |
| GATCAGTATCAACGTTTAGT+AGG | - | 38030:12521-12540 | MS.gene46190:intron | 35.0% | |
| GTTAATAGATGGTTGGAAAG+AGG | - | 38030:10915-10934 | MS.gene46190:CDS | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | - | 38030:11765-11784 | MS.gene46190:intron | 35.0% | |
| TGCACATGTTACAAAATGGT+GGG | + | 38030:10661-10680 | MS.gene46190:intergenic | 35.0% | |
| TGTTTGATGAGTACCTTAGT+CGG | + | 38030:12314-12333 | MS.gene46190:intergenic | 35.0% | |
| TTAACGGGGAAAAACATGAT+AGG | - | 38030:12798-12817 | MS.gene46190:intron | 35.0% | |
| ! | CTTCATAGTTCCTTCTAGAA+CGG | + | 38030:12112-12131 | MS.gene46190:intergenic | 35.0% |
| ! | GGATGATCATCAGATGTTTT+TGG | + | 38030:10518-10537 | MS.gene46190:intergenic | 35.0% |
| ! | TGTCTAGCATTGCTGTTAAA+TGG | - | 38030:11287-11306 | MS.gene46190:CDS | 35.0% |
| ! | TTCTAGAAGGAACTATGAAG+AGG | - | 38030:12112-12131 | MS.gene46190:intron | 35.0% |
| !! | ATCGATTTTGCAATTGGACT+AGG | - | 38030:11965-11984 | MS.gene46190:intron | 35.0% |
| !! | TAGGGATTGTTGACTTTCTA+TGG | - | 38030:11145-11164 | MS.gene46190:intron | 35.0% |
| !! | TTCATAGTTCCTTCTAGAAC+GGG | + | 38030:12111-12130 | MS.gene46190:intergenic | 35.0% |
| !!! | GTTTTAGCTTCTTTTCCGTA+TGG | + | 38030:12446-12465 | MS.gene46190:intergenic | 35.0% |
| !!! | TGTTTTTGGTTTGCAGCAAT+TGG | + | 38030:10504-10523 | MS.gene46190:intergenic | 35.0% |
| AAAAAATCCCGAGAAGCCAT+GGG | - | 38030:12894-12913 | MS.gene46190:CDS | 40.0% | |
| AACAAAATAGGTTACCTGGG+AGG | + | 38030:10597-10616 | MS.gene46190:intergenic | 40.0% | |
| ACATGTTGTGTCTTCCAAAG+AGG | - | 38030:10732-10751 | MS.gene46190:CDS | 40.0% | |
| ACTCCATGAGGTAAAGATGT+AGG | + | 38030:11217-11236 | MS.gene46190:intergenic | 40.0% | |
| AGACCCTAGAGAATCATCAA+GGG | - | 38030:12043-12062 | MS.gene46190:intron | 40.0% | |
| AGATTATTGACGCGGGATAT+CGG | - | 38030:12153-12172 | MS.gene46190:intron | 40.0% | |
| AGCCTCTTGTGTAAAAAGCA+GGG | - | 38030:11815-11834 | MS.gene46190:intron | 40.0% | |
| CACAAACAGATTATTGACGC+GGG | - | 38030:12146-12165 | MS.gene46190:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | 38030:11846-11865 | MS.gene46190:intron | 40.0% | |
| CTTGTGTAAAAAGCAGGGTA+AGG | - | 38030:11820-11839 | MS.gene46190:intron | 40.0% | |
| GAACTGACCAAGATTGTTCA+AGG | - | 38030:12467-12486 | MS.gene46190:CDS | 40.0% | |
| GCACAAACAGATTATTGACG+CGG | - | 38030:12145-12164 | MS.gene46190:intron | 40.0% | |
| GCACATGTTACAAAATGGTG+GGG | + | 38030:10660-10679 | MS.gene46190:intergenic | 40.0% | |
| TTCATCATAAAAGGGCAACC+CGG | + | 38030:11912-11931 | MS.gene46190:intergenic | 40.0% | |
| ! | ATGTTACAAAATGGTGGGGT+TGG | + | 38030:10656-10675 | MS.gene46190:intergenic | 40.0% |
| ! | TAACTTTGAAAACACCTCCC+AGG | - | 38030:10580-10599 | MS.gene46190:intron | 40.0% |
| !! | AAAAGTATCGGATCCGACTA+AGG | - | 38030:12298-12317 | MS.gene46190:intron | 40.0% |
| !! | AGCAAGTGCTGAAACACTAA+CGG | + | 38030:10549-10568 | MS.gene46190:intergenic | 40.0% |
| !!! | GGATCCGATACTTTTTAGCT+AGG | + | 38030:12293-12312 | MS.gene46190:intergenic | 40.0% |
| !!! | TACCCTGCTTTTTACACAAG+AGG | + | 38030:11820-11839 | MS.gene46190:intergenic | 40.0% |
| ACAAGTCTAGCTGCTTCTTC+AGG | + | 38030:10961-10980 | MS.gene46190:intergenic | 45.0% | |
| ACATGTCTGCTTAGTCCTTC+AGG | + | 38030:10718-10737 | MS.gene46190:intergenic | 45.0% | |
| CAAAAAATCCCGAGAAGCCA+TGG | - | 38030:12893-12912 | MS.gene46190:CDS | 45.0% | |
| CAGACCCTAGAGAATCATCA+AGG | - | 38030:12042-12061 | MS.gene46190:intron | 45.0% | |
| CAGCCTCTTGTGTAAAAAGC+AGG | - | 38030:11814-11833 | MS.gene46190:intron | 45.0% | |
| CCAGAAAACGCAATGCCATA+CGG | - | 38030:12428-12447 | MS.gene46190:CDS | 45.0% | |
| CCATGAGGTAAAGATGTAGG+AGG | + | 38030:11214-11233 | MS.gene46190:intergenic | 45.0% | |
| CCTCCTACATCTTTACCTCA+TGG | - | 38030:11211-11230 | MS.gene46190:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | 38030:11845-11864 | MS.gene46190:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | 38030:11842-11861 | MS.gene46190:intron | 45.0% | |
| GGTTCAACAGCTACTTCAAC+TGG | + | 38030:11190-11209 | MS.gene46190:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | - | 38030:11769-11788 | MS.gene46190:intron | 45.0% | |
| GTTTGCAGCAATTGGCATAG+AGG | + | 38030:10496-10515 | MS.gene46190:intergenic | 45.0% | |
| TCAACTGGAGTATGTGACAG+TGG | + | 38030:11175-11194 | MS.gene46190:intergenic | 45.0% | |
| TGAGGTAAAGATGTAGGAGG+AGG | + | 38030:11211-11230 | MS.gene46190:intergenic | 45.0% | |
| TGCTAAAGAAGGGTTTAGCG+TGG | - | 38030:12670-12689 | MS.gene46190:CDS | 45.0% | |
| ! | AGCGAAGCGAGTTGGATTAT+GGG | - | 38030:12867-12886 | MS.gene46190:CDS | 45.0% |
| ! | GGACCCTTGATGATTCTCTA+GGG | + | 38030:12049-12068 | MS.gene46190:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | 38030:11809-11828 | MS.gene46190:intergenic | 45.0% |
| !! | AAGTGCTGAAACACTAACGG+TGG | + | 38030:10546-10565 | MS.gene46190:intergenic | 45.0% |
| !! | CTAGGTTGATGCAAAAGCTG+TGG | - | 38030:11983-12002 | MS.gene46190:intron | 45.0% |
| !! | GAAACACTAACGGTGGATTG+TGG | + | 38030:10539-10558 | MS.gene46190:intergenic | 45.0% |
| !! | GCACTTACGGTTTCTAGTTC+TGG | + | 38030:12720-12739 | MS.gene46190:intergenic | 45.0% |
| !! | TAGTTCTGGTCGTTTGTCGT+AGG | + | 38030:12706-12725 | MS.gene46190:intergenic | 45.0% |
| !! | TTGATGATGAGGGGTAACCT+TGG | - | 38030:11733-11752 | MS.gene46190:intron | 45.0% |
| !!! | TTTATTTTTTAATCTTTTTT+AGG | - | 38030:10690-10709 | MS.gene46190:CDS | 5.0% |
| AAAGCTGTGGCAGATGGTGA+TGG | - | 38030:11996-12015 | MS.gene46190:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | 38030:11753-11772 | MS.gene46190:intergenic | 50.0% | |
| CAGCAATGTGCACGTTGCTA+GGG | + | 38030:12070-12089 | MS.gene46190:intergenic | 50.0% | |
| CCAAAGAGGCTCAAGCTAAG+TGG | - | 38030:10746-10765 | MS.gene46190:intron | 50.0% | |
| CTGTCCTTTCTCCAATCCCA+TGG | + | 38030:12913-12932 | MS.gene46190:intergenic | 50.0% | |
| GAAGCCATGGGATTGGAGAA+AGG | - | 38030:12906-12925 | MS.gene46190:CDS | 50.0% | |
| GATGCAAAAGCTGTGGCAGA+TGG | - | 38030:11990-12009 | MS.gene46190:intron | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | - | 38030:11775-11794 | MS.gene46190:intron | 50.0% | |
| TAATCCAACTCGCTTCGCTC+TGG | + | 38030:12866-12885 | MS.gene46190:intergenic | 50.0% | |
| TATTGACGCGGGATATCGGT+TGG | - | 38030:12157-12176 | MS.gene46190:CDS | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | 38030:11776-11795 | MS.gene46190:intron | 50.0% | |
| TCTCCAATCCCATGGCTTCT+CGG | + | 38030:12905-12924 | MS.gene46190:intergenic | 50.0% | |
| ! | CCACTTAGCTTGAGCCTCTT+TGG | + | 38030:10749-10768 | MS.gene46190:intergenic | 50.0% |
| ! | CCGTATGGCATTGCGTTTTC+TGG | + | 38030:12431-12450 | MS.gene46190:intergenic | 50.0% |
| ! | GAGCGAAGCGAGTTGGATTA+TGG | - | 38030:12866-12885 | MS.gene46190:CDS | 50.0% |
| ! | GGGACCCTTGATGATTCTCT+AGG | + | 38030:12050-12069 | MS.gene46190:intergenic | 50.0% |
| AAGAGGCAAGACCACCACCT+AGG | - | 38030:10932-10951 | MS.gene46190:CDS | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | 38030:11788-11807 | MS.gene46190:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | 38030:11886-11905 | MS.gene46190:intergenic | 55.0% | |
| ATCCCGAGAAGCCATGGGAT+TGG | - | 38030:12899-12918 | MS.gene46190:CDS | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | 38030:11885-11904 | MS.gene46190:intergenic | 55.0% | |
| CTCCAATCCCATGGCTTCTC+GGG | + | 38030:12904-12923 | MS.gene46190:intergenic | 55.0% | |
| GCAGCAATGTGCACGTTGCT+AGG | + | 38030:12071-12090 | MS.gene46190:intergenic | 55.0% | |
| GCTGCTTCTTCAGGTGTCCT+AGG | + | 38030:10952-10971 | MS.gene46190:intergenic | 55.0% | |
| GCTTCTTCAGGTGTCCTAGG+TGG | + | 38030:10949-10968 | MS.gene46190:intergenic | 55.0% | |
| TCTTCAGGTGTCCTAGGTGG+TGG | + | 38030:10946-10965 | MS.gene46190:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | 38030:11890-11909 | MS.gene46190:intron | 55.0% |
| ! | GAGCAGAAGCCCGTTCTAGA+AGG | - | 38030:12099-12118 | MS.gene46190:intron | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | 38030:11742-11761 | MS.gene46190:intron | 60.0% | |
| GAAGCCAGAGCGAAGCGAGT+TGG | - | 38030:12859-12878 | MS.gene46190:CDS | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | 38030:11858-11877 | MS.gene46190:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | 38030:11891-11910 | MS.gene46190:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | 38030:11873-11892 | MS.gene46190:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | 38030:11860-11879 | MS.gene46190:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | 38030:11873-11892 | MS.gene46190:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | 38030:11874-11893 | MS.gene46190:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | 38030:11874-11893 | MS.gene46190:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | 38030:11875-11894 | MS.gene46190:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | 38030:11879-11898 | MS.gene46190:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | 38030:11880-11899 | MS.gene46190:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 38030 | gene | 10473 | 12942 | 10473 | ID=MS.gene46190 |
| 38030 | mRNA | 10473 | 12942 | 10473 | ID=MS.gene46190.t1;Parent=MS.gene46190 |
| 38030 | exon | 12814 | 12942 | 12814 | ID=MS.gene46190.t1.exon1;Parent=MS.gene46190.t1 |
| 38030 | CDS | 12814 | 12942 | 12814 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 12648 | 12703 | 12648 | ID=MS.gene46190.t1.exon2;Parent=MS.gene46190.t1 |
| 38030 | CDS | 12648 | 12703 | 12648 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 12395 | 12509 | 12395 | ID=MS.gene46190.t1.exon3;Parent=MS.gene46190.t1 |
| 38030 | CDS | 12395 | 12509 | 12395 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 12154 | 12267 | 12154 | ID=MS.gene46190.t1.exon4;Parent=MS.gene46190.t1 |
| 38030 | CDS | 12154 | 12267 | 12154 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 11241 | 11428 | 11241 | ID=MS.gene46190.t1.exon5;Parent=MS.gene46190.t1 |
| 38030 | CDS | 11241 | 11428 | 11241 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 11096 | 11152 | 11096 | ID=MS.gene46190.t1.exon6;Parent=MS.gene46190.t1 |
| 38030 | CDS | 11096 | 11152 | 11096 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 10841 | 11000 | 10841 | ID=MS.gene46190.t1.exon7;Parent=MS.gene46190.t1 |
| 38030 | CDS | 10841 | 11000 | 10841 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 10684 | 10752 | 10684 | ID=MS.gene46190.t1.exon8;Parent=MS.gene46190.t1 |
| 38030 | CDS | 10684 | 10752 | 10684 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| 38030 | exon | 10473 | 10565 | 10473 | ID=MS.gene46190.t1.exon9;Parent=MS.gene46190.t1 |
| 38030 | CDS | 10473 | 10565 | 10473 | ID=cds.MS.gene46190.t1;Parent=MS.gene46190.t1 |
| Gene Sequence |
| Protein sequence |
