Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46368.t1 | XP_024637044.1 | 77.4 | 257 | 6 | 3 | 16 | 220 | 125 | 381 | 7.10E-96 | 360.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46368.t1 | Q9LPF6 | 46.5 | 254 | 82 | 3 | 16 | 218 | 126 | 376 | 4.7e-56 | 219.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46368.t1 | A0A396IJN7 | 77.4 | 257 | 6 | 3 | 16 | 220 | 125 | 381 | 5.1e-96 | 360.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050945 | MS.gene46368 | 0.80179 | 7.63E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene46368 | -0.815774 | 7.78E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46368.t1 | MTR_4g098900 | 82.278 | 237 | 7 | 3 | 16 | 217 | 125 | 361 | 5.41e-131 | 375 |
| MS.gene46368.t1 | MTR_2g015470 | 55.118 | 254 | 63 | 2 | 17 | 219 | 129 | 382 | 1.04e-84 | 256 |
| MS.gene46368.t1 | MTR_7g080750 | 45.635 | 252 | 70 | 4 | 16 | 213 | 112 | 350 | 1.75e-69 | 216 |
| MS.gene46368.t1 | MTR_3g058660 | 43.673 | 245 | 87 | 2 | 21 | 214 | 108 | 352 | 1.55e-63 | 201 |
| MS.gene46368.t1 | MTR_5g065080 | 31.727 | 249 | 118 | 4 | 15 | 211 | 110 | 358 | 3.20e-33 | 122 |
| MS.gene46368.t1 | MTR_6g082540 | 42.276 | 123 | 47 | 1 | 102 | 200 | 34 | 156 | 1.62e-32 | 116 |
| MS.gene46368.t1 | MTR_3g099740 | 27.059 | 255 | 132 | 3 | 15 | 215 | 113 | 367 | 6.24e-28 | 108 |
| MS.gene46368.t1 | MTR_3g099750 | 27.953 | 254 | 128 | 5 | 15 | 216 | 112 | 362 | 6.27e-27 | 106 |
| MS.gene46368.t1 | MTR_8g024620 | 27.615 | 239 | 122 | 2 | 15 | 202 | 120 | 358 | 2.99e-24 | 99.0 |
| MS.gene46368.t1 | MTR_8g024620 | 27.615 | 239 | 122 | 2 | 15 | 202 | 131 | 369 | 3.69e-24 | 98.6 |
| MS.gene46368.t1 | MTR_8g024620 | 27.615 | 239 | 122 | 2 | 15 | 202 | 132 | 370 | 3.73e-24 | 98.6 |
| MS.gene46368.t1 | MTR_2g437590 | 28.333 | 240 | 121 | 4 | 18 | 206 | 155 | 394 | 5.84e-22 | 93.2 |
| MS.gene46368.t1 | MTR_2g437580 | 27.347 | 245 | 129 | 3 | 18 | 213 | 136 | 380 | 4.91e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 50 | 300 | 2.51e-76 | 232 |
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 50 | 300 | 2.51e-76 | 232 |
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 50 | 300 | 2.51e-76 | 232 |
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 50 | 300 | 2.51e-76 | 232 |
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 50 | 300 | 2.51e-76 | 232 |
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 114 | 364 | 7.96e-75 | 230 |
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 114 | 364 | 7.96e-75 | 230 |
| MS.gene46368.t1 | AT1G44750 | 46.457 | 254 | 82 | 3 | 16 | 218 | 126 | 376 | 8.63e-75 | 231 |
| MS.gene46368.t1 | AT4G18210 | 50.199 | 251 | 70 | 3 | 17 | 216 | 129 | 375 | 1.10e-72 | 226 |
| MS.gene46368.t1 | AT4G18220 | 47.809 | 251 | 78 | 4 | 21 | 218 | 133 | 383 | 2.87e-66 | 209 |
| MS.gene46368.t1 | AT4G18195 | 42.366 | 262 | 92 | 4 | 16 | 219 | 131 | 391 | 8.09e-62 | 198 |
| MS.gene46368.t1 | AT4G18205 | 44.351 | 239 | 80 | 3 | 25 | 211 | 134 | 371 | 2.10e-60 | 194 |
| MS.gene46368.t1 | AT4G18190 | 42.683 | 246 | 86 | 4 | 16 | 206 | 121 | 366 | 1.22e-53 | 177 |
| MS.gene46368.t1 | AT4G08700 | 39.184 | 245 | 98 | 2 | 18 | 211 | 117 | 361 | 1.68e-52 | 173 |
| MS.gene46368.t1 | AT4G18197 | 43.162 | 234 | 82 | 2 | 25 | 207 | 137 | 370 | 1.70e-52 | 174 |
| MS.gene46368.t1 | AT5G41160 | 38.776 | 245 | 99 | 3 | 18 | 211 | 120 | 364 | 7.81e-50 | 166 |
| MS.gene46368.t1 | AT2G33750 | 33.198 | 247 | 114 | 3 | 18 | 213 | 95 | 341 | 4.87e-39 | 137 |
| MS.gene46368.t1 | AT2G33750 | 31.783 | 258 | 114 | 4 | 18 | 213 | 95 | 352 | 1.12e-35 | 129 |
| MS.gene46368.t1 | AT1G28230 | 32.218 | 239 | 110 | 4 | 15 | 201 | 96 | 334 | 1.61e-33 | 123 |
| MS.gene46368.t1 | AT1G28220 | 30.380 | 237 | 112 | 4 | 18 | 201 | 93 | 329 | 2.38e-32 | 120 |
| MS.gene46368.t1 | AT1G57943 | 29.032 | 186 | 89 | 4 | 16 | 163 | 138 | 318 | 1.02e-13 | 69.7 |
| MS.gene46368.t1 | AT1G57943 | 29.032 | 186 | 89 | 4 | 16 | 163 | 139 | 319 | 1.02e-13 | 69.7 |
| MS.gene46368.t1 | AT1G19770 | 25.941 | 239 | 116 | 7 | 25 | 202 | 154 | 392 | 3.48e-13 | 68.2 |
| MS.gene46368.t1 | AT1G09860 | 30.636 | 173 | 79 | 6 | 21 | 157 | 130 | 297 | 3.92e-13 | 67.8 |
| MS.gene46368.t1 | AT1G47603 | 27.232 | 224 | 100 | 6 | 40 | 203 | 163 | 383 | 6.00e-13 | 67.4 |
| MS.gene46368.t1 | AT1G57990 | 27.528 | 178 | 97 | 1 | 16 | 161 | 132 | 309 | 1.23e-12 | 66.6 |
| MS.gene46368.t1 | AT1G30840 | 29.204 | 226 | 110 | 3 | 18 | 193 | 111 | 336 | 1.60e-11 | 63.2 |
| MS.gene46368.t1 | AT1G30840 | 29.204 | 226 | 110 | 3 | 18 | 193 | 111 | 336 | 1.60e-11 | 63.2 |
| MS.gene46368.t1 | AT1G57980 | 28.495 | 186 | 101 | 2 | 15 | 168 | 135 | 320 | 1.75e-11 | 63.2 |
Find 45 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGTACTCGCTTATCTTT+AGG | 0.253149 | 8.4:+24058525 | None:intergenic |
| TAGCCTTGATGTTAGCAATA+TGG | 0.260377 | 8.4:-24058098 | MS.gene46368:CDS |
| CATATATAATGACTTTGTTT+TGG | 0.282504 | 8.4:-24058278 | MS.gene46368:CDS |
| GCTACTTGTGCTTGTGTTGT+TGG | 0.342888 | 8.4:-24058369 | MS.gene46368:CDS |
| AGCCTTGATGTTAGCAATAT+GGG | 0.344380 | 8.4:-24058097 | MS.gene46368:CDS |
| TTCTCTAATGGAGATAGTTC+AGG | 0.361251 | 8.4:-24059914 | None:intergenic |
| GGAGATGAAGGAATATGAAC+TGG | 0.366582 | 8.4:-24058310 | MS.gene46368:CDS |
| CTCATCTTCATGAGGTTTCA+AGG | 0.373710 | 8.4:-24058014 | MS.gene46368:CDS |
| TTCTTCCATGACAAAATCAA+TGG | 0.388872 | 8.4:-24058132 | MS.gene46368:CDS |
| CTACTTGTGCTTGTGTTGTT+GGG | 0.389251 | 8.4:-24058368 | MS.gene46368:CDS |
| CCTAAAGATAAGCGAGTACT+TGG | 0.390852 | 8.4:-24058525 | MS.gene46368:CDS |
| AGAATGGAAAAGTTTGAATA+AGG | 0.399319 | 8.4:-24058331 | MS.gene46368:CDS |
| ATCATCAGAATCGTTATTGA+TGG | 0.404902 | 8.4:+24058560 | None:intergenic |
| TAGATAATGTTGATAAATAT+AGG | 0.416324 | 8.4:+24058065 | None:intergenic |
| GTAAGAAAATACTGCATTGA+AGG | 0.434994 | 8.4:+24058659 | None:intergenic |
| TCTTCCATGACAAAATCAAT+GGG | 0.440740 | 8.4:-24058131 | MS.gene46368:CDS |
| CTTGGATTCGTCTTCACCCT+TGG | 0.444186 | 8.4:-24058507 | MS.gene46368:intron |
| GGTTGTTTGCAAGTGGAGAA+TGG | 0.463564 | 8.4:-24058347 | MS.gene46368:CDS |
| GAAGAAAATAACAGCAAGGA+TGG | 0.477070 | 8.4:+24058149 | None:intergenic |
| CAGTAGTTGTAGTTGATTGT+GGG | 0.484203 | 8.4:+24059884 | None:intergenic |
| TGTTGCACATAGCAAAGAAT+AGG | 0.497847 | 8.4:+24058689 | None:intergenic |
| TCATGAGGTTTCAAGGGGTG+AGG | 0.500851 | 8.4:-24058007 | MS.gene46368:CDS |
| GCACAAGTAGCGACGAACGA+AGG | 0.506108 | 8.4:+24058381 | None:intergenic |
| ATCGTTATTGATGGCAAGTA+GGG | 0.507986 | 8.4:+24058569 | None:intergenic |
| AAGTTTGAATAAGGAGATGA+AGG | 0.509849 | 8.4:-24058322 | MS.gene46368:CDS |
| CACAAGTAGCGACGAACGAA+GGG | 0.519538 | 8.4:+24058382 | None:intergenic |
| TGAAAGATATAGAAGTCCAT+TGG | 0.520330 | 8.4:+24058719 | None:intergenic |
| TCATCTTCATGAGGTTTCAA+GGG | 0.524727 | 8.4:-24058013 | MS.gene46368:CDS |
| GCAGTAGTTGTAGTTGATTG+TGG | 0.527047 | 8.4:+24059883 | None:intergenic |
| GACAATTTGATGTATTCCAA+TGG | 0.539300 | 8.4:-24058735 | MS.gene46368:CDS |
| AATCGTTATTGATGGCAAGT+AGG | 0.540072 | 8.4:+24058568 | None:intergenic |
| GTTGTTGGGTTGTTTGCAAG+TGG | 0.551141 | 8.4:-24058354 | MS.gene46368:CDS |
| TCCCCATATTGCTAACATCA+AGG | 0.553521 | 8.4:+24058095 | None:intergenic |
| CAATCAACTACAACTACTGC+AGG | 0.567854 | 8.4:-24059880 | MS.gene46368:intron |
| ACATGGCAAGTATCTTCCAT+TGG | 0.573996 | 8.4:-24058246 | MS.gene46368:intron |
| GAAGGAATATGAACTGGGAA+AGG | 0.585101 | 8.4:-24058304 | MS.gene46368:CDS |
| GTGAGGTTGAAATTTGCTGA+TGG | 0.585220 | 8.4:-24057990 | None:intergenic |
| TGCACATAGCAAAGAATAGG+TGG | 0.594060 | 8.4:+24058692 | None:intergenic |
| GAGATGAAGGAATATGAACT+GGG | 0.604093 | 8.4:-24058309 | MS.gene46368:CDS |
| GCCTTGATGTTAGCAATATG+GGG | 0.607447 | 8.4:-24058096 | MS.gene46368:CDS |
| AAGAAAATAACAGCAAGGAT+GGG | 0.616093 | 8.4:+24058150 | None:intergenic |
| CATCTTCATGAGGTTTCAAG+GGG | 0.629974 | 8.4:-24058012 | MS.gene46368:CDS |
| CATGGAAGAAAATAACAGCA+AGG | 0.631020 | 8.4:+24058145 | None:intergenic |
| GAATAAAACTCATCTTCATG+AGG | 0.640768 | 8.4:-24058022 | MS.gene46368:CDS |
| CTTCCATGACAAAATCAATG+GGG | 0.656091 | 8.4:-24058130 | MS.gene46368:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTAATTAAAAAT+TGG | - | chr8.4:24058318-24058337 | MS.gene46368:CDS | 0.0% |
| !!! | TAGATAATGTTGATAAATAT+AGG | + | chr8.4:24059838-24059857 | None:intergenic | 15.0% |
| !! | AAAGATTAAGAGATTTCAAA+TGG | - | chr8.4:24058863-24058882 | MS.gene46368:intron | 20.0% |
| !! | AGAAATTCATAACAAGAAAT+TGG | + | chr8.4:24058813-24058832 | None:intergenic | 20.0% |
| !! | ATCAATATTGACATTTATGT+TGG | + | chr8.4:24059070-24059089 | None:intergenic | 20.0% |
| !! | ATCTTGATTGTAGTATTTAA+AGG | - | chr8.4:24058213-24058232 | MS.gene46368:intron | 20.0% |
| !! | GAAATTCATAACAAGAAATT+GGG | + | chr8.4:24058812-24058831 | None:intergenic | 20.0% |
| !! | TCCTAACTATTGAAAATTAT+TGG | - | chr8.4:24058601-24058620 | MS.gene46368:CDS | 20.0% |
| !! | TTGTAAAATGATGAAAATAG+AGG | - | chr8.4:24058495-24058514 | MS.gene46368:intron | 20.0% |
| !!! | AAATTTTGGTTTGGTTTTTT+TGG | + | chr8.4:24059097-24059116 | None:intergenic | 20.0% |
| !!! | ATAATTTTCAATAGTTAGGA+AGG | + | chr8.4:24058601-24058620 | None:intergenic | 20.0% |
| !!! | ATTTTAGACCAAATATTTGT+TGG | - | chr8.4:24058431-24058450 | MS.gene46368:intron | 20.0% |
| !!! | CATATATAATGACTTTGTTT+TGG | - | chr8.4:24059622-24059641 | MS.gene46368:intron | 20.0% |
| !!! | GTTTCTCTTTACATATTTTT+TGG | - | chr8.4:24059126-24059145 | MS.gene46368:intron | 20.0% |
| ! | AGAATGGAAAAGTTTGAATA+AGG | - | chr8.4:24059569-24059588 | MS.gene46368:intron | 25.0% |
| ! | ATCCATAAAATGGTGAAAAT+AGG | + | chr8.4:24058259-24058278 | None:intergenic | 25.0% |
| ! | CAAAAAAAATCACATGTCAA+TGG | - | chr8.4:24058548-24058567 | MS.gene46368:CDS | 25.0% |
| ! | CTCAAATGTAATAAATACAG+TGG | - | chr8.4:24059713-24059732 | MS.gene46368:intron | 25.0% |
| ! | TATGTAAAGAGAAACAATGA+TGG | + | chr8.4:24059121-24059140 | None:intergenic | 25.0% |
| ! | TCCATAAAATGGTGAAAATA+GGG | + | chr8.4:24058258-24058277 | None:intergenic | 25.0% |
| !! | AATACATCAAAACTTGCTTT+AGG | - | chr8.4:24058575-24058594 | MS.gene46368:CDS | 25.0% |
| !! | GCCAATAATTTTCAATAGTT+AGG | + | chr8.4:24058605-24058624 | None:intergenic | 25.0% |
| !! | TACATAGTATTTCTTTTGGT+AGG | - | chr8.4:24058904-24058923 | MS.gene46368:intron | 25.0% |
| !! | TCTCTACATAGTATTTCTTT+TGG | - | chr8.4:24058900-24058919 | MS.gene46368:intron | 25.0% |
| !!! | AATGATGGAAAATTTTGGTT+TGG | + | chr8.4:24059106-24059125 | None:intergenic | 25.0% |
| !!! | CATTGACATGTGATTTTTTT+TGG | + | chr8.4:24058550-24058569 | None:intergenic | 25.0% |
| !!! | GAAACAATGATGGAAAATTT+TGG | + | chr8.4:24059111-24059130 | None:intergenic | 25.0% |
| AAATAGAGTGGAAGTAGTAT+AGG | + | chr8.4:24059021-24059040 | None:intergenic | 30.0% | |
| AAGAAAATAACAGCAAGGAT+GGG | + | chr8.4:24059753-24059772 | None:intergenic | 30.0% | |
| AAGTTTGAATAAGGAGATGA+AGG | - | chr8.4:24059578-24059597 | MS.gene46368:intron | 30.0% | |
| AATAGAGTGGAAGTAGTATA+GGG | + | chr8.4:24059020-24059039 | None:intergenic | 30.0% | |
| ACAAAGGTGGTAATAGTAAA+TGG | - | chr8.4:24058965-24058984 | MS.gene46368:intron | 30.0% | |
| AGACTATATTATGACAAAGG+TGG | - | chr8.4:24058952-24058971 | MS.gene46368:intron | 30.0% | |
| ATACTGTCGCGTTATAAAAT+AGG | + | chr8.4:24058290-24058309 | None:intergenic | 30.0% | |
| ATATAGTCTTCCCAATAGAT+TGG | + | chr8.4:24058941-24058960 | None:intergenic | 30.0% | |
| ATCATCAGAATCGTTATTGA+TGG | + | chr8.4:24059343-24059362 | None:intergenic | 30.0% | |
| GAATAAAACTCATCTTCATG+AGG | - | chr8.4:24059878-24059897 | MS.gene46368:intron | 30.0% | |
| GACAATTTGATGTATTCCAA+TGG | - | chr8.4:24059165-24059184 | MS.gene46368:intron | 30.0% | |
| GATTAAGAGATTTCAAATGG+TGG | - | chr8.4:24058866-24058885 | MS.gene46368:intron | 30.0% | |
| GGAAGACTATATTATGACAA+AGG | - | chr8.4:24058949-24058968 | MS.gene46368:intron | 30.0% | |
| GTAAGAAAATACTGCATTGA+AGG | + | chr8.4:24059244-24059263 | None:intergenic | 30.0% | |
| TACTGTCGCGTTATAAAATA+GGG | + | chr8.4:24058289-24058308 | None:intergenic | 30.0% | |
| TATCTTCCATTGGTATGTTA+GGG | - | chr8.4:24059664-24059683 | MS.gene46368:intron | 30.0% | |
| TCAGTAGTGAAAGATTAACA+TGG | + | chr8.4:24058627-24058646 | None:intergenic | 30.0% | |
| TCTCTTAATCTTTGATGTTG+AGG | + | chr8.4:24058856-24058875 | None:intergenic | 30.0% | |
| TCTTCCATGACAAAATCAAT+GGG | - | chr8.4:24059769-24059788 | MS.gene46368:intron | 30.0% | |
| TGAAAGATATAGAAGTCCAT+TGG | + | chr8.4:24059184-24059203 | None:intergenic | 30.0% | |
| TTCTTCCATGACAAAATCAA+TGG | - | chr8.4:24059768-24059787 | MS.gene46368:intron | 30.0% | |
| ! | ATTTTATAACGCGACAGTAT+TGG | - | chr8.4:24058290-24058309 | MS.gene46368:CDS | 30.0% |
| ! | TAGACCAAATATTTGTTGGA+GGG | - | chr8.4:24058435-24058454 | MS.gene46368:intron | 30.0% |
| ! | TCCCTATTTTCACCATTTTA+TGG | - | chr8.4:24058254-24058273 | MS.gene46368:CDS | 30.0% |
| ! | TCTTGTTATGAATTTCTCAG+AGG | - | chr8.4:24058816-24058835 | MS.gene46368:intron | 30.0% |
| ! | TGAAACCTTTTCAGTTATCT+TGG | - | chr8.4:24059482-24059501 | MS.gene46368:intron | 30.0% |
| ! | TTAGACCAAATATTTGTTGG+AGG | - | chr8.4:24058434-24058453 | MS.gene46368:intron | 30.0% |
| !! | CTGTGAACTTTTGAGAATTA+AGG | + | chr8.4:24059269-24059288 | None:intergenic | 30.0% |
| !!! | ACCGTCACATTTTAAAATAG+AGG | - | chr8.4:24058464-24058483 | MS.gene46368:intron | 30.0% |
| !!! | CCCTCTATTTTAAAATGTGA+CGG | + | chr8.4:24058468-24058487 | None:intergenic | 30.0% |
| !!! | CCGTCACATTTTAAAATAGA+GGG | - | chr8.4:24058465-24058484 | MS.gene46368:intron | 30.0% |
| !!! | CGTCACATTTTAAAATAGAG+GGG | - | chr8.4:24058466-24058485 | MS.gene46368:intron | 30.0% |
| !!! | TTTTGGTTTGGTTTTTTTGG+AGG | + | chr8.4:24059094-24059113 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTTACTTTTAGCA+GGG | - | chr8.4:24059142-24059161 | MS.gene46368:intron | 30.0% |
| !!! | TTTTTTGGCTTACTTTTAGC+AGG | - | chr8.4:24059141-24059160 | MS.gene46368:intron | 30.0% |
| AAAATGTAACAGATGCACCA+AGG | + | chr8.4:24059413-24059432 | None:intergenic | 35.0% | |
| AAACGATGAACACACAAAGT+TGG | + | chr8.4:24058703-24058722 | None:intergenic | 35.0% | |
| AAATGTAACAGATGCACCAA+GGG | + | chr8.4:24059412-24059431 | None:intergenic | 35.0% | |
| AACGATGAACACACAAAGTT+GGG | + | chr8.4:24058702-24058721 | None:intergenic | 35.0% | |
| AACTAACCCTAACATACCAA+TGG | + | chr8.4:24059673-24059692 | None:intergenic | 35.0% | |
| ACTGTCGCGTTATAAAATAG+GGG | + | chr8.4:24058288-24058307 | None:intergenic | 35.0% | |
| AGCCTTGATGTTAGCAATAT+GGG | - | chr8.4:24059803-24059822 | MS.gene46368:intron | 35.0% | |
| AGGTGGTAATAGTAAATGGA+TGG | - | chr8.4:24058969-24058988 | MS.gene46368:intron | 35.0% | |
| CAATCTACAGCCAATCTATT+GGG | - | chr8.4:24058928-24058947 | MS.gene46368:intron | 35.0% | |
| CAGTAGTTGTAGTTGATTGT+GGG | + | chr8.4:24058019-24058038 | None:intergenic | 35.0% | |
| CATGGAAGAAAATAACAGCA+AGG | + | chr8.4:24059758-24059777 | None:intergenic | 35.0% | |
| CATGTCCAAGATAACTGAAA+AGG | + | chr8.4:24059490-24059509 | None:intergenic | 35.0% | |
| CTTCCATGACAAAATCAATG+GGG | - | chr8.4:24059770-24059789 | MS.gene46368:intron | 35.0% | |
| GAAGAAAATAACAGCAAGGA+TGG | + | chr8.4:24059754-24059773 | None:intergenic | 35.0% | |
| GAGATGAAGGAATATGAACT+GGG | - | chr8.4:24059591-24059610 | MS.gene46368:intron | 35.0% | |
| GGGGAACTAAATCCATAAAA+TGG | + | chr8.4:24058269-24058288 | None:intergenic | 35.0% | |
| GGTGTGAAGATAAAATAGAG+TGG | + | chr8.4:24059033-24059052 | None:intergenic | 35.0% | |
| GTATCTTCCATTGGTATGTT+AGG | - | chr8.4:24059663-24059682 | MS.gene46368:intron | 35.0% | |
| TAGAACAATGAACACCAGTT+CGG | + | chr8.4:24058756-24058775 | None:intergenic | 35.0% | |
| TCAATCTACAGCCAATCTAT+TGG | - | chr8.4:24058927-24058946 | MS.gene46368:intron | 35.0% | |
| TCATCTTCATGAGGTTTCAA+GGG | - | chr8.4:24059887-24059906 | MS.gene46368:CDS | 35.0% | |
| TCTAGATGACAAAAAAGCCA+AGG | - | chr8.4:24059854-24059873 | MS.gene46368:intron | 35.0% | |
| TGATCCCTCCAACAAATATT+TGG | + | chr8.4:24058442-24058461 | None:intergenic | 35.0% | |
| TGTTGCACATAGCAAAGAAT+AGG | + | chr8.4:24059214-24059233 | None:intergenic | 35.0% | |
| ! | AATCGTTATTGATGGCAAGT+AGG | + | chr8.4:24059335-24059354 | None:intergenic | 35.0% |
| ! | ACACAAAGTTGGGTCAATTT+TGG | + | chr8.4:24058692-24058711 | None:intergenic | 35.0% |
| ! | ATCGTTATTGATGGCAAGTA+GGG | + | chr8.4:24059334-24059353 | None:intergenic | 35.0% |
| ! | ATGTTGGTAGATTTAGCATG+TGG | + | chr8.4:24059054-24059073 | None:intergenic | 35.0% |
| ! | TAAAGGCTCAATTGCAGTTT+TGG | - | chr8.4:24058230-24058249 | MS.gene46368:intron | 35.0% |
| ! | TAGCCTTGATGTTAGCAATA+TGG | - | chr8.4:24059802-24059821 | MS.gene46368:intron | 35.0% |
| ! | TCATGTCTCTCAAAGTTGAT+AGG | - | chr8.4:24058180-24058199 | MS.gene46368:intron | 35.0% |
| !!! | AAGATGAGTTTTATTCGCCT+TGG | + | chr8.4:24059874-24059893 | None:intergenic | 35.0% |
| !!! | TTTTGGCTTACTTTTAGCAG+GGG | - | chr8.4:24059143-24059162 | MS.gene46368:intron | 35.0% |
| AACTACAACTACTGCAGGTT+AGG | - | chr8.4:24058025-24058044 | MS.gene46368:CDS | 40.0% | |
| AATACAGTGGTACTTCCTGT+AGG | - | chr8.4:24059726-24059745 | MS.gene46368:intron | 40.0% | |
| ACATGGCAAGTATCTTCCAT+TGG | - | chr8.4:24059654-24059673 | MS.gene46368:intron | 40.0% | |
| CAATCAACTACAACTACTGC+AGG | - | chr8.4:24058020-24058039 | MS.gene46368:CDS | 40.0% | |
| CATCTTCATGAGGTTTCAAG+GGG | - | chr8.4:24059888-24059907 | MS.gene46368:CDS | 40.0% | |
| CCAAGTACTCGCTTATCTTT+AGG | + | chr8.4:24059378-24059397 | None:intergenic | 40.0% | |
| CCTAAAGATAAGCGAGTACT+TGG | - | chr8.4:24059375-24059394 | MS.gene46368:intron | 40.0% | |
| CTCATCTTCATGAGGTTTCA+AGG | - | chr8.4:24059886-24059905 | MS.gene46368:CDS | 40.0% | |
| GAAGGAATATGAACTGGGAA+AGG | - | chr8.4:24059596-24059615 | MS.gene46368:intron | 40.0% | |
| GCAACATTTGTTCAATCAGC+TGG | - | chr8.4:24058991-24059010 | MS.gene46368:intron | 40.0% | |
| GCAGTAGTTGTAGTTGATTG+TGG | + | chr8.4:24058020-24058039 | None:intergenic | 40.0% | |
| GCCTTGATGTTAGCAATATG+GGG | - | chr8.4:24059804-24059823 | MS.gene46368:intron | 40.0% | |
| GGAGATGAAGGAATATGAAC+TGG | - | chr8.4:24059590-24059609 | MS.gene46368:intron | 40.0% | |
| GTCAAAAGAAAGCTGCACAA+GGG | + | chr8.4:24059448-24059467 | None:intergenic | 40.0% | |
| TCCCCATATTGCTAACATCA+AGG | + | chr8.4:24059808-24059827 | None:intergenic | 40.0% | |
| TGCACATAGCAAAGAATAGG+TGG | + | chr8.4:24059211-24059230 | None:intergenic | 40.0% | |
| TGTCAAAAGAAAGCTGCACA+AGG | + | chr8.4:24059449-24059468 | None:intergenic | 40.0% | |
| ! | CTACTTGTGCTTGTGTTGTT+GGG | - | chr8.4:24059532-24059551 | MS.gene46368:intron | 40.0% |
| !! | TGTTTTGGATTGCTGTGACA+TGG | - | chr8.4:24059637-24059656 | MS.gene46368:intron | 40.0% |
| !!! | TCACCCCATTGATTTTGTCA+TGG | + | chr8.4:24059776-24059795 | None:intergenic | 40.0% |
| ACTACTGCAGGTTAGGAACA+TGG | - | chr8.4:24058032-24058051 | MS.gene46368:CDS | 45.0% | |
| GCTACTTGTGCTTGTGTTGT+TGG | - | chr8.4:24059531-24059550 | MS.gene46368:intron | 45.0% | |
| GGTTGTTTGCAAGTGGAGAA+TGG | - | chr8.4:24059553-24059572 | MS.gene46368:intron | 45.0% | |
| ! | GTTGTTGGGTTGTTTGCAAG+TGG | - | chr8.4:24059546-24059565 | MS.gene46368:intron | 45.0% |
| ! | TTTGCTCTTTTGAGCCGAAC+TGG | - | chr8.4:24058739-24058758 | MS.gene46368:CDS | 45.0% |
| !!! | TTTTTAATTAAAAAATATAG+AGG | + | chr8.4:24058317-24058336 | None:intergenic | 5.0% |
| AAGACACTACCGTTGCTCTG+CGG | - | chr8.4:24058654-24058673 | MS.gene46368:CDS | 50.0% | |
| CACAAGTAGCGACGAACGAA+GGG | + | chr8.4:24059521-24059540 | None:intergenic | 50.0% | |
| CTTGGATTCGTCTTCACCCT+TGG | - | chr8.4:24059393-24059412 | MS.gene46368:intron | 50.0% | |
| TCATGAGGTTTCAAGGGGTG+AGG | - | chr8.4:24059893-24059912 | MS.gene46368:CDS | 50.0% | |
| ACAGCAAGGATGGGACCTAC+AGG | + | chr8.4:24059744-24059763 | None:intergenic | 55.0% | |
| GCACAAGTAGCGACGAACGA+AGG | + | chr8.4:24059522-24059541 | None:intergenic | 55.0% | |
| TGTCTCTGACCGCAGAGCAA+CGG | + | chr8.4:24058666-24058685 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 24057993 | 24059929 | 24057993 | ID=MS.gene46368 |
| chr8.4 | mRNA | 24057993 | 24059929 | 24057993 | ID=MS.gene46368.t1;Parent=MS.gene46368 |
| chr8.4 | exon | 24059881 | 24059929 | 24059881 | ID=MS.gene46368.t1.exon1;Parent=MS.gene46368.t1 |
| chr8.4 | CDS | 24059881 | 24059929 | 24059881 | ID=cds.MS.gene46368.t1;Parent=MS.gene46368.t1 |
| chr8.4 | exon | 24058508 | 24058759 | 24058508 | ID=MS.gene46368.t1.exon2;Parent=MS.gene46368.t1 |
| chr8.4 | CDS | 24058508 | 24058759 | 24058508 | ID=cds.MS.gene46368.t1;Parent=MS.gene46368.t1 |
| chr8.4 | exon | 24058247 | 24058426 | 24058247 | ID=MS.gene46368.t1.exon3;Parent=MS.gene46368.t1 |
| chr8.4 | CDS | 24058247 | 24058426 | 24058247 | ID=cds.MS.gene46368.t1;Parent=MS.gene46368.t1 |
| chr8.4 | exon | 24057993 | 24058174 | 24057993 | ID=MS.gene46368.t1.exon4;Parent=MS.gene46368.t1 |
| chr8.4 | CDS | 24057993 | 24058174 | 24057993 | ID=cds.MS.gene46368.t1;Parent=MS.gene46368.t1 |
| Gene Sequence |
| Protein sequence |
