Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46528.t1 | XP_013448244.1 | 94.6 | 391 | 21 | 0 | 1 | 391 | 1 | 391 | 1.20E-175 | 625.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46528.t1 | Q6PJ69 | 42.6 | 68 | 39 | 0 | 152 | 219 | 6 | 73 | 1.4e-10 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46528.t1 | A0A072TYL1 | 94.6 | 391 | 21 | 0 | 1 | 391 | 1 | 391 | 8.9e-176 | 625.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050310 | MS.gene46528 | 0.80327 | 3.78E-49 | -1.69E-46 |
| MS.gene056169 | MS.gene46528 | 0.810645 | 1.04E-50 | -1.69E-46 |
| MS.gene058197 | MS.gene46528 | 0.819585 | 1.08E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene46528 | 0.816439 | 5.53E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene46528 | 0.818835 | 1.59E-52 | -1.69E-46 |
| MS.gene06057 | MS.gene46528 | 0.827385 | 1.61E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46528.t1 | MTR_7g035445 | 96.931 | 391 | 12 | 0 | 1 | 391 | 1 | 391 | 0.0 | 776 |
| MS.gene46528.t1 | MTR_7g035455 | 54.688 | 128 | 37 | 3 | 126 | 243 | 123 | 239 | 2.44e-36 | 132 |
| MS.gene46528.t1 | MTR_1g093975 | 49.533 | 107 | 53 | 1 | 138 | 244 | 2 | 107 | 5.11e-30 | 113 |
| MS.gene46528.t1 | MTR_1g094005 | 49.533 | 107 | 53 | 1 | 138 | 244 | 2 | 107 | 5.11e-30 | 113 |
| MS.gene46528.t1 | MTR_0044s0160 | 45.631 | 103 | 31 | 4 | 175 | 274 | 18 | 98 | 1.26e-17 | 79.3 |
| MS.gene46528.t1 | MTR_3g037230 | 43.421 | 76 | 41 | 2 | 154 | 228 | 186 | 260 | 7.79e-15 | 76.3 |
| MS.gene46528.t1 | MTR_3g037230 | 43.421 | 76 | 41 | 2 | 154 | 228 | 139 | 213 | 1.07e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46528.t1 | AT3G27330 | 45.257 | 369 | 148 | 11 | 20 | 382 | 589 | 909 | 1.09e-71 | 241 |
| MS.gene46528.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 154 | 234 | 192 | 272 | 5.67e-17 | 82.8 |
| MS.gene46528.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 154 | 234 | 192 | 272 | 5.80e-17 | 82.8 |
| MS.gene46528.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 154 | 234 | 192 | 272 | 5.80e-17 | 82.8 |
| MS.gene46528.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 154 | 234 | 192 | 272 | 5.80e-17 | 82.8 |
Find 89 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCTCTAATATTTA+AGG | 0.118236 | 7.1:+59793100 | None:intergenic |
| TTATTGTAAAATGCTGTTTC+TGG | 0.158375 | 7.1:+59793062 | None:intergenic |
| CTTCAATTTCTTGAGGAAAT+AGG | 0.182917 | 7.1:+59793144 | None:intergenic |
| CAGGGGTATCTTCAACAATT+AGG | 0.202307 | 7.1:+59794855 | None:intergenic |
| TTAATGATAATTACCTTTCT+TGG | 0.217346 | 7.1:+59794460 | None:intergenic |
| CTTATCAATTGTCTGCATTT+AGG | 0.222674 | 7.1:+59793500 | None:intergenic |
| TAAAATGCTGTTTCTGGAAT+TGG | 0.263282 | 7.1:+59793068 | None:intergenic |
| TTCTGCTGCTCTTCCTTGTA+TGG | 0.267924 | 7.1:-59793883 | MS.gene46528:CDS |
| TCATGATTACCTTGATGAAT+TGG | 0.313369 | 7.1:+59794772 | None:intergenic |
| CATCATCCAGTATTATTTCC+TGG | 0.319089 | 7.1:+59792979 | None:intergenic |
| TAATGATAATTACCTTTCTT+GGG | 0.320688 | 7.1:+59794461 | None:intergenic |
| CAAGTAGGGGTATGAATTCT+AGG | 0.342271 | 7.1:-59793007 | MS.gene46528:CDS |
| TCGTTGTTGTCGATGTTCTA+TGG | 0.348545 | 7.1:+59792898 | None:intergenic |
| GTGTAAGAGGGAGGACAAGA+AGG | 0.357536 | 7.1:-59792827 | MS.gene46528:CDS |
| AAGATGCTGCATTTGCTCTA+AGG | 0.363988 | 7.1:-59792785 | MS.gene46528:CDS |
| ATACCCCTACTTGATGGATA+TGG | 0.366991 | 7.1:+59793017 | None:intergenic |
| AGGGGTATCTTCAACAATTA+GGG | 0.379967 | 7.1:+59794856 | None:intergenic |
| AGAAAAGGAATTGATTCAAA+AGG | 0.390908 | 7.1:-59793934 | MS.gene46528:CDS |
| GAATTCATACCCCTACTTGA+TGG | 0.390998 | 7.1:+59793011 | None:intergenic |
| GCTGAATGCTTCTATTCCTT+CGG | 0.391782 | 7.1:+59793039 | None:intergenic |
| TAATAAGTGAAGCCATGTTT+TGG | 0.393874 | 7.1:+59794942 | None:intergenic |
| TGTAAGAGGGAGGACAAGAA+GGG | 0.397476 | 7.1:-59792826 | MS.gene46528:CDS |
| GAGAAACCAGGAAATAATAC+TGG | 0.403836 | 7.1:-59792985 | MS.gene46528:CDS |
| ACATCCTTCGATCTCTATTA+CGG | 0.407073 | 7.1:+59792646 | None:intergenic |
| TGCTGCTGCTATGGCTGGAT+GGG | 0.411982 | 7.1:-59794903 | MS.gene46528:CDS |
| AGGAAGTAAAGTAGGAGAAA+AGG | 0.414168 | 7.1:-59793949 | MS.gene46528:CDS |
| AAATCTGCTGCTGCTATGGC+TGG | 0.428516 | 7.1:-59794908 | MS.gene46528:CDS |
| TCCACCACAACCGATTGTTC+TGG | 0.433857 | 7.1:-59794504 | MS.gene46528:CDS |
| TCATCATCAATAAGTGTAAG+AGG | 0.433883 | 7.1:-59792840 | MS.gene46528:CDS |
| TGATGATGAGGATGCTGAAT+TGG | 0.437088 | 7.1:-59792961 | MS.gene46528:CDS |
| TTAGAATCTCGATCTCGATC+AGG | 0.437867 | 7.1:+59794836 | None:intergenic |
| AGGATGCTGAATTGGCTAGA+AGG | 0.444958 | 7.1:-59792953 | MS.gene46528:CDS |
| TCGACAACAACGAGGGTTCA+TGG | 0.454204 | 7.1:-59792888 | MS.gene46528:CDS |
| TATTAGCTAGAGAAAATTTG+AGG | 0.460411 | 7.1:-59792695 | MS.gene46528:CDS |
| CAAATGCAGCATCTTCATCT+TGG | 0.463007 | 7.1:+59792793 | None:intergenic |
| CTGCTGCTGCTATGGCTGGA+TGG | 0.468909 | 7.1:-59794904 | MS.gene46528:CDS |
| GTTAATGAAGGAAGTAAAGT+AGG | 0.469630 | 7.1:-59793957 | MS.gene46528:CDS |
| ATTCAAATCTGCTGCTGCTA+TGG | 0.473535 | 7.1:-59794912 | MS.gene46528:CDS |
| TTCTCTAGCTAATAAATTGG+AGG | 0.476407 | 7.1:+59792704 | None:intergenic |
| CTAAATGCAGACAATTGATA+AGG | 0.485837 | 7.1:-59793499 | MS.gene46528:intron |
| TAGAGAAAATTTGAGGGCTA+TGG | 0.493703 | 7.1:-59792688 | MS.gene46528:CDS |
| ATCGAGATTCTAAACAGAAA+AGG | 0.497473 | 7.1:-59794826 | MS.gene46528:CDS |
| TGACCACAAGGAGTGGTACT+TGG | 0.499092 | 7.1:+59793716 | None:intergenic |
| GGGTTCATGGTGGTAATTCA+AGG | 0.501442 | 7.1:-59792875 | MS.gene46528:CDS |
| GAAAAGGAATTGATTCAAAA+GGG | 0.503435 | 7.1:-59793933 | MS.gene46528:CDS |
| TCTCTTAGCTTATCCATACA+AGG | 0.507539 | 7.1:+59793870 | None:intergenic |
| TGTTTAGGAAACGCAGAGCT+AGG | 0.509681 | 7.1:-59794529 | MS.gene46528:intron |
| ATTAGCTAGAGAAAATTTGA+GGG | 0.509766 | 7.1:-59792694 | MS.gene46528:CDS |
| TAAGAGGGAGGACAAGAAGG+GGG | 0.515962 | 7.1:-59792824 | MS.gene46528:CDS |
| TCATCGAGATCCAGAACAAT+CGG | 0.518971 | 7.1:+59794494 | None:intergenic |
| GCAGCAGCAGATTTGAATCT+CGG | 0.519442 | 7.1:+59794917 | None:intergenic |
| TTCCTAGCTTCAATTTCTTG+AGG | 0.521825 | 7.1:+59793137 | None:intergenic |
| TGGAGGAAGATGACTGTGCC+TGG | 0.521867 | 7.1:+59792721 | None:intergenic |
| TACACTTATTGATGATGATG+AGG | 0.524665 | 7.1:+59792845 | None:intergenic |
| AATGATAATTACCTTTCTTG+GGG | 0.530697 | 7.1:+59794462 | None:intergenic |
| ATTGTTCTGGATCTCGATGA+AGG | 0.541428 | 7.1:-59794491 | MS.gene46528:CDS |
| TGCTCTAAGGTTGCAAAGAG+AGG | 0.541925 | 7.1:-59792772 | MS.gene46528:CDS |
| GTAAGAGGGAGGACAAGAAG+GGG | 0.546725 | 7.1:-59792825 | MS.gene46528:CDS |
| CTCCGCTCTCCAATTCATCA+AGG | 0.547530 | 7.1:-59794781 | MS.gene46528:intron |
| GGCTATGGCAACTAGAGCAA+TGG | 0.550394 | 7.1:-59792673 | MS.gene46528:CDS |
| TAGAATCTCGATCTCGATCA+GGG | 0.558922 | 7.1:+59794837 | None:intergenic |
| TTCAGCCATATCCATCAAGT+AGG | 0.563313 | 7.1:-59793022 | MS.gene46528:CDS |
| GTACCACTCCTTGTGGTCAC+AGG | 0.564856 | 7.1:-59793712 | MS.gene46528:intron |
| AGGTTACAAAGAGAACTTGA+TGG | 0.575098 | 7.1:-59792933 | MS.gene46528:CDS |
| TTCCTCAAGAAATTGAAGCT+AGG | 0.577378 | 7.1:-59793139 | MS.gene46528:CDS |
| TCCAGAACAATCGGTTGTGG+TGG | 0.581128 | 7.1:+59794503 | None:intergenic |
| AAGAGGGAGGACAAGAAGGG+GGG | 0.581947 | 7.1:-59792823 | MS.gene46528:CDS |
| TCAGCCATATCCATCAAGTA+GGG | 0.584477 | 7.1:-59793021 | MS.gene46528:CDS |
| AGATCCAGAACAATCGGTTG+TGG | 0.586599 | 7.1:+59794500 | None:intergenic |
| ACGATCGTGCACTGTGAACA+CGG | 0.594261 | 7.1:-59793189 | MS.gene46528:CDS |
| CATCATCAATAAGTGTAAGA+GGG | 0.598286 | 7.1:-59792839 | MS.gene46528:CDS |
| TACCTTGATGAATTGGAGAG+CGG | 0.617422 | 7.1:+59794779 | None:intergenic |
| ATTTAATACCTGTGACCACA+AGG | 0.619480 | 7.1:+59793704 | None:intergenic |
| GCACTGTGAACACGGTTCTG+TGG | 0.620825 | 7.1:-59793181 | MS.gene46528:CDS |
| ATGATAATTACCTTTCTTGG+GGG | 0.621971 | 7.1:+59794463 | None:intergenic |
| AATAATACTGGATGATGATG+AGG | 0.630102 | 7.1:-59792973 | MS.gene46528:CDS |
| AGATCTGCTGCAGACAAATG+TGG | 0.647592 | 7.1:-59793533 | MS.gene46528:CDS |
| ATACCTGTGACCACAAGGAG+TGG | 0.653809 | 7.1:+59793709 | None:intergenic |
| GAGCCAAGTACCACTCCTTG+TGG | 0.657194 | 7.1:-59793719 | MS.gene46528:CDS |
| TATGAATTCTAGGAGAAACC+AGG | 0.658367 | 7.1:-59792997 | MS.gene46528:CDS |
| GTTGTTGATGAACAGATAGT+GGG | 0.665792 | 7.1:-59794007 | MS.gene46528:intron |
| CATCAATAAGTGTAAGAGGG+AGG | 0.669182 | 7.1:-59792836 | MS.gene46528:CDS |
| CAGCCATATCCATCAAGTAG+GGG | 0.675531 | 7.1:-59793020 | MS.gene46528:CDS |
| ATCTCCGTAATAGAGATCGA+AGG | 0.690694 | 7.1:-59792650 | MS.gene46528:CDS |
| AGCGACGAATAGCCAAAACA+TGG | 0.697063 | 7.1:-59794954 | MS.gene46528:CDS |
| AGAATCTCGATCTCGATCAG+GGG | 0.709311 | 7.1:+59794838 | None:intergenic |
| TAGAACATCGACAACAACGA+GGG | 0.710209 | 7.1:-59792895 | MS.gene46528:CDS |
| ATAGAACATCGACAACAACG+AGG | 0.769880 | 7.1:-59792896 | MS.gene46528:CDS |
| ACAACAACGAGGGTTCATGG+TGG | 0.784670 | 7.1:-59792885 | MS.gene46528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATCATTAATTTTGAT+TGG | - | chr7.1:59793198-59793217 | MS.gene46528:CDS | 10.0% |
| !! | AAAAAAACATCAAATTCAAA+TGG | + | chr7.1:59792936-59792955 | None:intergenic | 15.0% |
| !! | AAAAAACATCAAATTCAAAT+GGG | + | chr7.1:59792935-59792954 | None:intergenic | 15.0% |
| !!! | AATTGGATTAGTTTAATTAA+TGG | - | chr7.1:59793074-59793093 | MS.gene46528:CDS | 15.0% |
| !!! | ATTGGATTAGTTTAATTAAT+GGG | - | chr7.1:59793075-59793094 | MS.gene46528:CDS | 15.0% |
| !!! | ATTTAAAATCATGCTTATAA+TGG | - | chr7.1:59794363-59794382 | MS.gene46528:intron | 15.0% |
| !!! | ATTTCATTAGTTTTGTTATT+GGG | - | chr7.1:59792993-59793012 | MS.gene46528:CDS | 15.0% |
| !!! | ATTTGAATTTGATGTTTTTT+TGG | - | chr7.1:59792935-59792954 | MS.gene46528:CDS | 15.0% |
| !!! | GGTTTTTTTATTAAGAATAT+TGG | - | chr7.1:59793049-59793068 | MS.gene46528:CDS | 15.0% |
| !!! | TATTAAGAATATTGGTTAAT+TGG | - | chr7.1:59793057-59793076 | MS.gene46528:CDS | 15.0% |
| !!! | TGATTTTTTGTGTTAAATAT+TGG | - | chr7.1:59793028-59793047 | MS.gene46528:CDS | 15.0% |
| !! | AAGAAAAATTGTGTTAATGA+AGG | - | chr7.1:59793679-59793698 | MS.gene46528:intron | 20.0% |
| !! | AATTAAATGACATATATGCA+AGG | - | chr7.1:59794205-59794224 | MS.gene46528:intron | 20.0% |
| !! | ATTGCAGTATACATATAATT+AGG | + | chr7.1:59794345-59794364 | None:intergenic | 20.0% |
| !! | TAATGATAATTACCTTTCTT+GGG | + | chr7.1:59793190-59793209 | None:intergenic | 20.0% |
| !! | TTAATGATAATTACCTTTCT+TGG | + | chr7.1:59793191-59793210 | None:intergenic | 20.0% |
| !!! | AATTTTGATTGGTCTAAAAT+TGG | - | chr7.1:59793209-59793228 | MS.gene46528:intron | 20.0% |
| !!! | ACTTTTAGTATAACTTCAAT+CGG | + | chr7.1:59794003-59794022 | None:intergenic | 20.0% |
| !!! | ATATGCAAGGTTTTAAATTT+CGG | - | chr7.1:59794218-59794237 | MS.gene46528:intron | 20.0% |
| !!! | ATTTTCTCTAGCTAATAAAT+TGG | + | chr7.1:59794950-59794969 | None:intergenic | 20.0% |
| !!! | GATTTCATTAGTTTTGTTAT+TGG | - | chr7.1:59792992-59793011 | MS.gene46528:CDS | 20.0% |
| !!! | TTATAATGGATTTTGTTCAA+CGG | - | chr7.1:59794377-59794396 | MS.gene46528:intron | 20.0% |
| ! | AATGATAATTACCTTTCTTG+GGG | + | chr7.1:59793189-59793208 | None:intergenic | 25.0% |
| ! | ATACAAAATCAATTACGTCA+GGG | + | chr7.1:59794038-59794057 | None:intergenic | 25.0% |
| ! | ATTAGCTAGAGAAAATTTGA+GGG | - | chr7.1:59794954-59794973 | MS.gene46528:CDS | 25.0% |
| ! | TATTAGCTAGAGAAAATTTG+AGG | - | chr7.1:59794953-59794972 | MS.gene46528:CDS | 25.0% |
| ! | TGATTCCTAAATTTCTGATT+TGG | - | chr7.1:59794062-59794081 | MS.gene46528:intron | 25.0% |
| !! | AAGAACACAATTTGAAACTA+CGG | + | chr7.1:59793418-59793437 | None:intergenic | 25.0% |
| !! | AGAAAAGGAATTGATTCAAA+AGG | - | chr7.1:59793714-59793733 | MS.gene46528:CDS | 25.0% |
| !! | GAAAAGGAATTGATTCAAAA+GGG | - | chr7.1:59793715-59793734 | MS.gene46528:CDS | 25.0% |
| !! | TTCTCAAATTATTTTCAGTG+TGG | - | chr7.1:59793524-59793543 | MS.gene46528:CDS | 25.0% |
| !!! | TGAATTGCTATTTTGTGTTT+AGG | - | chr7.1:59793104-59793123 | MS.gene46528:CDS | 25.0% |
| !!! | TTATTGTAAAATGCTGTTTC+TGG | + | chr7.1:59794589-59794608 | None:intergenic | 25.0% |
| AAAACTATATCTTGCAGCAA+TGG | - | chr7.1:59794436-59794455 | MS.gene46528:intron | 30.0% | |
| ATCGAGATTCTAAACAGAAA+AGG | - | chr7.1:59792822-59792841 | MS.gene46528:CDS | 30.0% | |
| ATGATAATTACCTTTCTTGG+GGG | + | chr7.1:59793188-59793207 | None:intergenic | 30.0% | |
| ATTGGCCAAATCAGAAATTT+AGG | + | chr7.1:59794070-59794089 | None:intergenic | 30.0% | |
| CATACAAAATCAATTACGTC+AGG | + | chr7.1:59794039-59794058 | None:intergenic | 30.0% | |
| CATCATCAATAAGTGTAAGA+GGG | - | chr7.1:59794809-59794828 | MS.gene46528:CDS | 30.0% | |
| CTAAATGCAGACAATTGATA+AGG | - | chr7.1:59794149-59794168 | MS.gene46528:intron | 30.0% | |
| CTTATCAATTGTCTGCATTT+AGG | + | chr7.1:59794151-59794170 | None:intergenic | 30.0% | |
| CTTCAATTTCTTGAGGAAAT+AGG | + | chr7.1:59794507-59794526 | None:intergenic | 30.0% | |
| GTAATTATATGAGTGTGAGT+CGG | + | chr7.1:59793310-59793329 | None:intergenic | 30.0% | |
| GTTAATGAAGGAAGTAAAGT+AGG | - | chr7.1:59793691-59793710 | MS.gene46528:intron | 30.0% | |
| TAATTGCAACTCCATTAACA+TGG | + | chr7.1:59794313-59794332 | None:intergenic | 30.0% | |
| TCATCATCAATAAGTGTAAG+AGG | - | chr7.1:59794808-59794827 | MS.gene46528:CDS | 30.0% | |
| TCATGATTACCTTGATGAAT+TGG | + | chr7.1:59792879-59792898 | None:intergenic | 30.0% | |
| TTCTCTAGCTAATAAATTGG+AGG | + | chr7.1:59794947-59794966 | None:intergenic | 30.0% | |
| TTTCTACAAAAGCTGCAAAT+TGG | + | chr7.1:59794088-59794107 | None:intergenic | 30.0% | |
| ! | AATAATACTGGATGATGATG+AGG | - | chr7.1:59794675-59794694 | MS.gene46528:intron | 30.0% |
| ! | TAATAAGTGAAGCCATGTTT+TGG | + | chr7.1:59792709-59792728 | None:intergenic | 30.0% |
| ! | TGCTGCTTCTCTAATATTTA+AGG | + | chr7.1:59794551-59794570 | None:intergenic | 30.0% |
| !! | TAAAATGCTGTTTCTGGAAT+TGG | + | chr7.1:59794583-59794602 | None:intergenic | 30.0% |
| !! | TACACTTATTGATGATGATG+AGG | + | chr7.1:59794806-59794825 | None:intergenic | 30.0% |
| !!! | GTTTTGTTATTGGGTTGATT+TGG | - | chr7.1:59793002-59793021 | MS.gene46528:CDS | 30.0% |
| ACATCCTTCGATCTCTATTA+CGG | + | chr7.1:59795005-59795024 | None:intergenic | 35.0% | |
| AGCAGCAATTTCCATGTTAA+TGG | - | chr7.1:59794299-59794318 | MS.gene46528:intron | 35.0% | |
| AGGAAGTAAAGTAGGAGAAA+AGG | - | chr7.1:59793699-59793718 | MS.gene46528:intron | 35.0% | |
| AGGTTACAAAGAGAACTTGA+TGG | - | chr7.1:59794715-59794734 | MS.gene46528:intron | 35.0% | |
| ATGAACACATATCCAACACT+GGG | + | chr7.1:59793285-59793304 | None:intergenic | 35.0% | |
| ATTTAATACCTGTGACCACA+AGG | + | chr7.1:59793947-59793966 | None:intergenic | 35.0% | |
| CATCATCCAGTATTATTTCC+TGG | + | chr7.1:59794672-59794691 | None:intergenic | 35.0% | |
| GAGAAACCAGGAAATAATAC+TGG | - | chr7.1:59794663-59794682 | MS.gene46528:intron | 35.0% | |
| TAGAGAAAATTTGAGGGCTA+TGG | - | chr7.1:59794960-59794979 | MS.gene46528:CDS | 35.0% | |
| TATTATCAGTGTGATCAGTG+TGG | - | chr7.1:59793355-59793374 | MS.gene46528:intron | 35.0% | |
| TCTCTTAGCTTATCCATACA+AGG | + | chr7.1:59793781-59793800 | None:intergenic | 35.0% | |
| TTCCTAGCTTCAATTTCTTG+AGG | + | chr7.1:59794514-59794533 | None:intergenic | 35.0% | |
| TTCCTCAAGAAATTGAAGCT+AGG | - | chr7.1:59794509-59794528 | MS.gene46528:CDS | 35.0% | |
| ! | CAGCATTTTACAATAACCGA+AGG | - | chr7.1:59794593-59794612 | MS.gene46528:intron | 35.0% |
| ! | GTTGTTGATGAACAGATAGT+GGG | - | chr7.1:59793641-59793660 | MS.gene46528:intron | 35.0% |
| ! | GTTGTTGTTGATGAACAGAT+AGG | - | chr7.1:59793453-59793472 | MS.gene46528:intron | 35.0% |
| ! | TATGAATTCTAGGAGAAACC+AGG | - | chr7.1:59794651-59794670 | MS.gene46528:intron | 35.0% |
| ! | TATTTTCAGTGTGGATGTGT+CGG | - | chr7.1:59793533-59793552 | MS.gene46528:CDS | 35.0% |
| ! | TGTTGTTGATGAACAGATAG+TGG | - | chr7.1:59793455-59793474 | MS.gene46528:intron | 35.0% |
| !! | AGGGGTATCTTCAACAATTA+GGG | + | chr7.1:59792795-59792814 | None:intergenic | 35.0% |
| !! | TATTCGTCGCTGTTTTCTTT+CGG | + | chr7.1:59792685-59792704 | None:intergenic | 35.0% |
| AAGATGCTGCATTTGCTCTA+AGG | - | chr7.1:59794863-59794882 | MS.gene46528:CDS | 40.0% | |
| ATAGAACATCGACAACAACG+AGG | - | chr7.1:59794752-59794771 | MS.gene46528:intron | 40.0% | |
| ATCTCCGTAATAGAGATCGA+AGG | - | chr7.1:59794998-59795017 | MS.gene46528:CDS | 40.0% | |
| ATTATATTCGTGTCCGACAC+TGG | + | chr7.1:59793485-59793504 | None:intergenic | 40.0% | |
| ATTCAAATCTGCTGCTGCTA+TGG | - | chr7.1:59792736-59792755 | MS.gene46528:CDS | 40.0% | |
| CAAATGCAGCATCTTCATCT+TGG | + | chr7.1:59794858-59794877 | None:intergenic | 40.0% | |
| CATCAATAAGTGTAAGAGGG+AGG | - | chr7.1:59794812-59794831 | MS.gene46528:CDS | 40.0% | |
| CATGAACACATATCCAACAC+TGG | + | chr7.1:59793286-59793305 | None:intergenic | 40.0% | |
| GAATTCATACCCCTACTTGA+TGG | + | chr7.1:59794640-59794659 | None:intergenic | 40.0% | |
| GCTGAATGCTTCTATTCCTT+CGG | + | chr7.1:59794612-59794631 | None:intergenic | 40.0% | |
| TACCTTGATGAATTGGAGAG+CGG | + | chr7.1:59792872-59792891 | None:intergenic | 40.0% | |
| TAGAACATCGACAACAACGA+GGG | - | chr7.1:59794753-59794772 | MS.gene46528:intron | 40.0% | |
| TAGAATCTCGATCTCGATCA+GGG | + | chr7.1:59792814-59792833 | None:intergenic | 40.0% | |
| TCAGCCATATCCATCAAGTA+GGG | - | chr7.1:59794627-59794646 | MS.gene46528:intron | 40.0% | |
| TCATCGAGATCCAGAACAAT+CGG | + | chr7.1:59793157-59793176 | None:intergenic | 40.0% | |
| TCGTTGTTGTCGATGTTCTA+TGG | + | chr7.1:59794753-59794772 | None:intergenic | 40.0% | |
| TGAAAAACTTGCGCACAAGT+GGG | - | chr7.1:59794268-59794287 | MS.gene46528:intron | 40.0% | |
| TTAGAATCTCGATCTCGATC+AGG | + | chr7.1:59792815-59792834 | None:intergenic | 40.0% | |
| TTATATTCGTGTCCGACACT+GGG | + | chr7.1:59793484-59793503 | None:intergenic | 40.0% | |
| TTCAGCCATATCCATCAAGT+AGG | - | chr7.1:59794626-59794645 | MS.gene46528:intron | 40.0% | |
| TTGAAAAACTTGCGCACAAG+TGG | - | chr7.1:59794267-59794286 | MS.gene46528:intron | 40.0% | |
| ! | AGCTTTTACTAGTAGAAGCC+AGG | - | chr7.1:59794909-59794928 | MS.gene46528:CDS | 40.0% |
| ! | ATACCCCTACTTGATGGATA+TGG | + | chr7.1:59794634-59794653 | None:intergenic | 40.0% |
| ! | ATTGTTCTGGATCTCGATGA+AGG | - | chr7.1:59793157-59793176 | MS.gene46528:CDS | 40.0% |
| ! | CAAGTAGGGGTATGAATTCT+AGG | - | chr7.1:59794641-59794660 | MS.gene46528:intron | 40.0% |
| ! | CAATTTGAAACTACGGAGCA+CGG | + | chr7.1:59793411-59793430 | None:intergenic | 40.0% |
| ! | TGATGATGAGGATGCTGAAT+TGG | - | chr7.1:59794687-59794706 | MS.gene46528:intron | 40.0% |
| !! | CAGGGGTATCTTCAACAATT+AGG | + | chr7.1:59792796-59792815 | None:intergenic | 40.0% |
| !! | GCGCAAGTTTTTCAACACAA+AGG | + | chr7.1:59794262-59794281 | None:intergenic | 40.0% |
| AAAAACTTGCGCACAAGTGG+GGG | - | chr7.1:59794270-59794289 | MS.gene46528:intron | 45.0% | |
| ACAGACACAGACTCAAACAC+AGG | + | chr7.1:59793573-59793592 | None:intergenic | 45.0% | |
| AGAATCTCGATCTCGATCAG+GGG | + | chr7.1:59792813-59792832 | None:intergenic | 45.0% | |
| AGATCCAGAACAATCGGTTG+TGG | + | chr7.1:59793151-59793170 | None:intergenic | 45.0% | |
| AGATCTGCTGCAGACAAATG+TGG | - | chr7.1:59794115-59794134 | MS.gene46528:intron | 45.0% | |
| AGCGACGAATAGCCAAAACA+TGG | - | chr7.1:59792694-59792713 | MS.gene46528:CDS | 45.0% | |
| AGGATGCTGAATTGGCTAGA+AGG | - | chr7.1:59794695-59794714 | MS.gene46528:intron | 45.0% | |
| CAGCCATATCCATCAAGTAG+GGG | - | chr7.1:59794628-59794647 | MS.gene46528:intron | 45.0% | |
| GAAAAACTTGCGCACAAGTG+GGG | - | chr7.1:59794269-59794288 | MS.gene46528:intron | 45.0% | |
| GCACAGATACTCTTCGCATT+AGG | - | chr7.1:59793254-59793273 | MS.gene46528:intron | 45.0% | |
| GCAGCAGCAGATTTGAATCT+CGG | + | chr7.1:59792734-59792753 | None:intergenic | 45.0% | |
| GGGTTCATGGTGGTAATTCA+AGG | - | chr7.1:59794773-59794792 | MS.gene46528:intron | 45.0% | |
| TGTAAGAGGGAGGACAAGAA+GGG | - | chr7.1:59794822-59794841 | MS.gene46528:CDS | 45.0% | |
| TGTTTAGGAAACGCAGAGCT+AGG | - | chr7.1:59793119-59793138 | MS.gene46528:CDS | 45.0% | |
| TTCTGCTGCTCTTCCTTGTA+TGG | - | chr7.1:59793765-59793784 | MS.gene46528:intron | 45.0% | |
| ! | CTGTTTTCTTTCGGATCACG+GGG | + | chr7.1:59792676-59792695 | None:intergenic | 45.0% |
| !! | CGCTGTTTTCTTTCGGATCA+CGG | + | chr7.1:59792678-59792697 | None:intergenic | 45.0% |
| !! | GCTGTTTTCTTTCGGATCAC+GGG | + | chr7.1:59792677-59792696 | None:intergenic | 45.0% |
| !! | TGCTCTAAGGTTGCAAAGAG+AGG | - | chr7.1:59794876-59794895 | MS.gene46528:CDS | 45.0% |
| AAATCTGCTGCTGCTATGGC+TGG | - | chr7.1:59792740-59792759 | MS.gene46528:CDS | 50.0% | |
| ACAACAACGAGGGTTCATGG+TGG | - | chr7.1:59794763-59794782 | MS.gene46528:intron | 50.0% | |
| ACGATCGTGCACTGTGAACA+CGG | - | chr7.1:59794459-59794478 | MS.gene46528:intron | 50.0% | |
| ATACCTGTGACCACAAGGAG+TGG | + | chr7.1:59793942-59793961 | None:intergenic | 50.0% | |
| CTCCGCTCTCCAATTCATCA+AGG | - | chr7.1:59792867-59792886 | MS.gene46528:CDS | 50.0% | |
| GAAGGAGAAACCCCCAAGAA+AGG | - | chr7.1:59793175-59793194 | MS.gene46528:CDS | 50.0% | |
| GGCTATGGCAACTAGAGCAA+TGG | - | chr7.1:59794975-59794994 | MS.gene46528:CDS | 50.0% | |
| GTAAGAGGGAGGACAAGAAG+GGG | - | chr7.1:59794823-59794842 | MS.gene46528:CDS | 50.0% | |
| GTGTAAGAGGGAGGACAAGA+AGG | - | chr7.1:59794821-59794840 | MS.gene46528:CDS | 50.0% | |
| TAAGAGGGAGGACAAGAAGG+GGG | - | chr7.1:59794824-59794843 | MS.gene46528:CDS | 50.0% | |
| TCCACCACAACCGATTGTTC+TGG | - | chr7.1:59793144-59793163 | MS.gene46528:CDS | 50.0% | |
| TCCAGAACAATCGGTTGTGG+TGG | + | chr7.1:59793148-59793167 | None:intergenic | 50.0% | |
| TCGACAACAACGAGGGTTCA+TGG | - | chr7.1:59794760-59794779 | MS.gene46528:intron | 50.0% | |
| TGACCACAAGGAGTGGTACT+TGG | + | chr7.1:59793935-59793954 | None:intergenic | 50.0% | |
| AAACTACGGAGCACGGACAC+AGG | + | chr7.1:59793404-59793423 | None:intergenic | 55.0% | |
| AAGAGGGAGGACAAGAAGGG+GGG | - | chr7.1:59794825-59794844 | MS.gene46528:CDS | 55.0% | |
| AGATAGGCGTGTCCCAGTGT+CGG | - | chr7.1:59793469-59793488 | MS.gene46528:intron | 55.0% | |
| AGGACAAGAAGGGGGGTTTC+AGG | - | chr7.1:59794832-59794851 | MS.gene46528:CDS | 55.0% | |
| CATTAGGCGTGTCCCAGTGT+TGG | - | chr7.1:59793270-59793289 | MS.gene46528:intron | 55.0% | |
| GAGCCAAGTACCACTCCTTG+TGG | - | chr7.1:59793929-59793948 | MS.gene46528:CDS | 55.0% | |
| GCACTGTGAACACGGTTCTG+TGG | - | chr7.1:59794467-59794486 | MS.gene46528:intron | 55.0% | |
| GTACCACTCCTTGTGGTCAC+AGG | - | chr7.1:59793936-59793955 | MS.gene46528:CDS | 55.0% | |
| TGCTGCTGCTATGGCTGGAT+GGG | - | chr7.1:59792745-59792764 | MS.gene46528:CDS | 55.0% | |
| TGGAGGAAGATGACTGTGCC+TGG | + | chr7.1:59794930-59794949 | None:intergenic | 55.0% | |
| CTGCTGCTGCTATGGCTGGA+TGG | - | chr7.1:59792744-59792763 | MS.gene46528:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 59792644 | 59795026 | 59792644 | ID=MS.gene46528 |
| chr7.1 | mRNA | 59792644 | 59795026 | 59792644 | ID=MS.gene46528.t1;Parent=MS.gene46528 |
| chr7.1 | exon | 59794782 | 59795026 | 59794782 | ID=MS.gene46528.t1.exon1;Parent=MS.gene46528.t1 |
| chr7.1 | CDS | 59794782 | 59795026 | 59794782 | ID=cds.MS.gene46528.t1;Parent=MS.gene46528.t1 |
| chr7.1 | exon | 59794474 | 59794544 | 59794474 | ID=MS.gene46528.t1.exon2;Parent=MS.gene46528.t1 |
| chr7.1 | CDS | 59794474 | 59794544 | 59794474 | ID=cds.MS.gene46528.t1;Parent=MS.gene46528.t1 |
| chr7.1 | exon | 59793854 | 59794014 | 59793854 | ID=MS.gene46528.t1.exon3;Parent=MS.gene46528.t1 |
| chr7.1 | CDS | 59793854 | 59794014 | 59793854 | ID=cds.MS.gene46528.t1;Parent=MS.gene46528.t1 |
| chr7.1 | exon | 59793713 | 59793762 | 59793713 | ID=MS.gene46528.t1.exon4;Parent=MS.gene46528.t1 |
| chr7.1 | CDS | 59793713 | 59793762 | 59793713 | ID=cds.MS.gene46528.t1;Parent=MS.gene46528.t1 |
| chr7.1 | exon | 59793500 | 59793574 | 59793500 | ID=MS.gene46528.t1.exon5;Parent=MS.gene46528.t1 |
| chr7.1 | CDS | 59793500 | 59793574 | 59793500 | ID=cds.MS.gene46528.t1;Parent=MS.gene46528.t1 |
| chr7.1 | exon | 59792644 | 59793217 | 59792644 | ID=MS.gene46528.t1.exon6;Parent=MS.gene46528.t1 |
| chr7.1 | CDS | 59792644 | 59793217 | 59792644 | ID=cds.MS.gene46528.t1;Parent=MS.gene46528.t1 |
| Gene Sequence |
| Protein sequence |
