AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46771

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46771.t1 MTR_3g029590 97.548 734 13 4 1 732 1 731 0.0 1458
MS.gene46771.t1 MTR_7g092070 64.067 718 219 16 33 731 33 730 0.0 830
MS.gene46771.t1 MTR_0728s0020 57.717 622 229 12 29 642 13 608 0.0 632
MS.gene46771.t1 MTR_1g050438 57.724 615 226 12 33 639 1 589 0.0 625
MS.gene46771.t1 MTR_3g435590 63.984 497 100 4 1 497 1 418 0.0 604
MS.gene46771.t1 MTR_3g435590 52.174 92 42 2 591 682 379 468 1.96e-18 89.4
MS.gene46771.t1 MTR_3g435680 62.408 407 89 9 95 497 5 351 1.02e-151 447
MS.gene46771.t1 MTR_5g082830 40.222 721 325 23 45 729 28 678 7.97e-144 437
MS.gene46771.t1 MTR_5g071070 39.071 732 334 19 45 729 33 699 5.36e-140 428
MS.gene46771.t1 MTR_5g071070 38.856 682 305 19 95 729 1 617 2.58e-125 387
MS.gene46771.t1 MTR_1g075890 38.268 635 277 17 44 668 30 559 2.49e-121 378
MS.gene46771.t1 MTR_3g070880 34.342 661 244 17 45 691 8 492 2.90e-104 329
MS.gene46771.t1 MTR_3g464260 42.651 347 126 8 52 392 30 309 1.21e-76 256
MS.gene46771.t1 MTR_3g464280 34.332 434 173 11 49 468 19 354 5.36e-59 208
MS.gene46771.t1 MTR_6g090380 72.897 107 29 0 262 368 99 205 1.56e-55 195
MS.gene46771.t1 MTR_8g102100 52.410 166 68 2 262 420 77 238 5.83e-52 185
MS.gene46771.t1 MTR_2g090605 67.568 111 36 0 266 376 77 187 8.85e-52 186
MS.gene46771.t1 MTR_3g103960 62.281 114 42 1 256 368 43 156 1.17e-48 173
MS.gene46771.t1 MTR_4g078660 61.682 107 41 0 262 368 56 162 2.39e-47 171
MS.gene46771.t1 MTR_3g464270 32.483 431 196 15 265 682 8 356 3.16e-46 169
MS.gene46771.t1 MTR_3g464290 31.602 462 211 16 245 687 79 454 3.21e-40 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46771.t1 AT2G41900 59.025 759 236 24 1 731 1 712 0.0 769
MS.gene46771.t1 AT5G12850 51.126 755 294 25 1 729 1 706 0.0 664
MS.gene46771.t1 AT5G58620 41.364 660 284 18 44 685 11 585 8.17e-138 419
MS.gene46771.t1 AT2G40140 37.778 720 294 22 26 729 10 591 1.85e-123 381
MS.gene46771.t1 AT2G40140 37.778 720 294 22 26 729 10 591 1.85e-123 381
MS.gene46771.t1 AT3G55980 45.305 426 187 6 47 471 30 410 6.60e-113 353
MS.gene46771.t1 AT3G55980 45.305 426 187 6 47 471 97 477 6.23e-112 353
MS.gene46771.t1 AT2G19810 68.033 122 37 1 251 370 61 182 2.06e-55 194
MS.gene46771.t1 AT4G29190 53.939 165 70 1 255 413 68 232 9.64e-55 192
MS.gene46771.t1 AT2G25900 69.725 109 33 0 262 370 86 194 1.04e-54 191
MS.gene46771.t1 AT2G25900 69.725 109 33 0 262 370 86 194 1.04e-54 191
MS.gene46771.t1 AT5G07500 61.983 121 46 0 248 368 34 154 5.79e-53 184
MS.gene46771.t1 AT1G03790 54.601 163 66 3 223 381 43 201 2.53e-52 187
MS.gene46771.t1 AT5G44260 61.719 128 44 2 244 370 42 165 7.68e-49 177

Find 189 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTATCATCTGCTGAAAA+TGG 0.161392 3.3:-21234995 MS.gene46771:CDS
ACAGCTGAGTCGGTAAATTT+TGG 0.186788 3.3:+21234950 None:intergenic
CGGCATTGATCACTCTGTTT+TGG 0.190245 3.3:-21233511 MS.gene46771:CDS
CAGCTGTAGTGAAACTTTCT+AGG 0.248659 3.3:+21234740 None:intergenic
TAGGAAGCAGCCACCATTAA+AGG 0.251482 3.3:+21235367 None:intergenic
TGAGCACCGAACTCCTTTAA+TGG 0.259664 3.3:-21235380 MS.gene46771:CDS
CTTCTTGGCGACATCCTTCC+AGG 0.288417 3.3:+21233912 None:intergenic
CTAGTTTGATTAATGCTTCC+TGG 0.291144 3.3:+21234326 None:intergenic
CACTTAGACCAGGAGTTAAC+AGG 0.326627 3.3:+21233753 None:intergenic
CATACTGAGCCTGGTGGAAT+AGG 0.327090 3.3:+21233946 None:intergenic
TTCGGTGCTCAAGAACAATT+TGG 0.328148 3.3:+21235392 None:intergenic
CCCTCTCTCCAATGAGTTCT+CGG 0.331992 3.3:-21233881 MS.gene46771:CDS
TTATTAATGAAGTTGGCTTC+TGG 0.334337 3.3:-21235438 MS.gene46771:CDS
GCAAGCTTCTCTTTCTTCTC+AGG 0.349206 3.3:+21233585 None:intergenic
TACAGCGGACGCAGCTCTTC+AGG 0.358359 3.3:+21234554 None:intergenic
AAAGAGAAGCTTGCAGGTTC+CGG 0.358491 3.3:-21233576 MS.gene46771:CDS
TGTGTTTGACCAAAGTCATT+TGG 0.362491 3.3:+21233690 None:intergenic
GAGAGGGCTTCCATACTTCT+TGG 0.363064 3.3:+21233897 None:intergenic
TCCAATGAGTTCTCGGTTGT+CGG 0.364436 3.3:-21233874 MS.gene46771:CDS
AAGGATGTCGCCAAGAAGTA+TGG 0.366617 3.3:-21233907 MS.gene46771:CDS
GAGAAGAAAGAGAAGCTTGC+AGG 0.368507 3.3:-21233582 MS.gene46771:CDS
ATACTGAGCCTGGTGGAATA+GGG 0.368901 3.3:+21233947 None:intergenic
TTCTCTTTCTTCTCAGGTGT+GGG 0.372072 3.3:+21233591 None:intergenic
GATATGAGAGTATAAGCTTT+AGG 0.383249 3.3:+21235329 None:intergenic
GACTGAAATGGCACCAGGAC+GGG 0.388865 3.3:+21234184 None:intergenic
ATGCCGTCCACTTGAGGGTT+GGG 0.394038 3.3:+21233528 None:intergenic
AACAATCCTGTCTCAGCTGT+TGG 0.394825 3.3:-21233780 MS.gene46771:CDS
TTAATGGTGGCTGCTTCCTA+TGG 0.398871 3.3:-21235364 MS.gene46771:CDS
GAAATCTTCAAAATCATTGT+TGG 0.399103 3.3:+21235489 None:intergenic
GCCATTTCAGTCGGTCGATC+TGG 0.401730 3.3:-21234173 MS.gene46771:CDS
AGCAGTAGAAGCAGCTGATC+GGG 0.402586 3.3:+21234502 None:intergenic
CCATTTGCAGATGGGGATAG+AGG 0.407663 3.3:+21234392 None:intergenic
AGGGGATGCTCTACGTTTGT+AGG 0.408542 3.3:+21233966 None:intergenic
TTTCACGCCTTCGAGCTTAT+GGG 0.408761 3.3:+21235120 None:intergenic
AGCTTTGGAGCTGTTGAAAC+TGG 0.414417 3.3:+21234021 None:intergenic
CTTCTCTTTCTTCTCAGGTG+TGG 0.414946 3.3:+21233590 None:intergenic
AATAGATCATCAAGATTTGA+TGG 0.416006 3.3:+21234131 None:intergenic
GCTTCACTTATTAATGAAGT+TGG 0.420259 3.3:-21235445 MS.gene46771:CDS
ATTCCGCATGTATTCATTCA+AGG 0.421704 3.3:-21234846 MS.gene46771:CDS
TCAGGAAGAGATGGGTCAAC+TGG 0.426785 3.3:+21234899 None:intergenic
CAGTATGGTCTCTCTTCTCC+TGG 0.430222 3.3:-21233930 MS.gene46771:CDS
AGCCTTGTCCGATACTGAGC+TGG 0.430472 3.3:+21234629 None:intergenic
GAGATTGATGATGGTGAACC+AGG 0.434842 3.3:+21234443 None:intergenic
ACAATCCTGTCTCAGCTGTT+GGG 0.435810 3.3:-21233779 MS.gene46771:CDS
AATATGTTGCAAGACTTTGA+TGG 0.442806 3.3:-21234248 MS.gene46771:CDS
TGTTTCTCACAGCCCCGTCC+TGG 0.446692 3.3:-21234197 MS.gene46771:CDS
TTCTCTCCAGGATGCACAAA+AGG 0.447031 3.3:+21234779 None:intergenic
CTTCTGGTATGTCCGTCAAA+AGG 0.447129 3.3:-21235422 MS.gene46771:CDS
CCCCTATTGGAAAAGCTGAT+TGG 0.449350 3.3:-21233722 MS.gene46771:CDS
AAATGAAGAGCTGGCACATT+GGG 0.453972 3.3:+21234350 None:intergenic
AGCTTATGGGGAACAACAAT+AGG 0.455127 3.3:+21235133 None:intergenic
AGACATGACATTTGTGTTGA+TGG 0.455769 3.3:+21233989 None:intergenic
AAAAGGGGCTTGCAGACGTT+CGG 0.457342 3.3:-21234696 MS.gene46771:CDS
TTGGGTCCCCTGTTAACTCC+TGG 0.457724 3.3:-21233761 MS.gene46771:CDS
AGACAGCAGATTTGTGTGTT+GGG 0.461702 3.3:+21234048 None:intergenic
TTGGCTTGAGCAACTGCAGC+TGG 0.464022 3.3:-21233484 MS.gene46771:CDS
CTGTGCTGCCTCAAGTGGTT+CGG 0.464047 3.3:-21235254 MS.gene46771:CDS
CTCCTTCGAGCATTCTCTCC+AGG 0.464846 3.3:+21234767 None:intergenic
AAGGCTCTGCAAAGACGGTA+TGG 0.467673 3.3:-21234612 MS.gene46771:CDS
CGTCCGCTGTATGTGTCCAC+TGG 0.470219 3.3:-21234542 MS.gene46771:CDS
CTTTATCATCTGCTGAAAAT+GGG 0.474367 3.3:-21234994 MS.gene46771:CDS
TCTGTAAATCCAAATGACTT+TGG 0.474432 3.3:-21233699 MS.gene46771:CDS
GAAAATACAGAAGCCGCGGC+AGG 0.477087 3.3:+21234071 None:intergenic
TCCTCTTCATCCGCGGCTGA+AGG 0.477213 3.3:-21235595 MS.gene46771:CDS
GCCAGATCGACCGACTGAAA+TGG 0.478294 3.3:+21234172 None:intergenic
TAATGGTGGCTGCTTCCTAT+GGG 0.478863 3.3:-21235363 MS.gene46771:CDS
ATTTGTGTTGATGGGTGATA+AGG 0.483158 3.3:+21233998 None:intergenic
TTCTGGTATGTCCGTCAAAA+GGG 0.484629 3.3:-21235421 MS.gene46771:CDS
TGATGGGTGATAAGGAGCTT+TGG 0.486363 3.3:+21234006 None:intergenic
CCTCTATCCCCATCTGCAAA+TGG 0.492687 3.3:-21234392 MS.gene46771:CDS
TTTGGAGCCACGGGAGAGGA+TGG 0.493852 3.3:+21234968 None:intergenic
GCATTATTGCCATTTGCAGA+TGG 0.493990 3.3:+21234383 None:intergenic
TCTCTTATTTCATCGAGTCC+TGG 0.494292 3.3:-21235028 MS.gene46771:CDS
CATTATTGCCATTTGCAGAT+GGG 0.495177 3.3:+21234384 None:intergenic
GATCAATGCCGTCCACTTGA+GGG 0.496520 3.3:+21233523 None:intergenic
ATGATGGTGAACCAGGGAAA+AGG 0.496915 3.3:+21234450 None:intergenic
GGAAGCATGTTCGAGTAAGC+TGG 0.497010 3.3:+21235510 None:intergenic
CTATTCCACCAGGCTCAGTA+TGG 0.498689 3.3:-21233945 MS.gene46771:CDS
TGTTAACTCCTGGTCTAAGT+GGG 0.498891 3.3:-21233751 MS.gene46771:CDS
GGAACAACAATAACATCGAC+AGG 0.499757 3.3:+21235154 None:intergenic
CTTCACTGTGCTGCCTCAAG+TGG 0.502797 3.3:-21235259 MS.gene46771:CDS
AGAAGAGCCTGATGTAGGTT+GGG 0.503303 3.3:-21233634 MS.gene46771:CDS
CTCATGGAGTATTCGAGTGC+TGG 0.504199 3.3:-21234658 MS.gene46771:CDS
AGCTGGTGCTGATATCAATT+CGG 0.504695 3.3:-21235197 MS.gene46771:CDS
CTCGTGCATACTCTCATGAT+TGG 0.506954 3.3:-21234811 MS.gene46771:CDS
CTGCAAATGGCAATAATGCT+TGG 0.507435 3.3:-21234379 MS.gene46771:CDS
GCCGACAACCGAGAACTCAT+TGG 0.508829 3.3:+21233873 None:intergenic
CTTCCTGGTAAATGAAGAGC+TGG 0.509476 3.3:+21234341 None:intergenic
CTGTTAACTCCTGGTCTAAG+TGG 0.510095 3.3:-21233752 MS.gene46771:CDS
ATTGTTTCCATGCTCAAAAG+AGG 0.511229 3.3:+21233659 None:intergenic
CAGCCACCATTAAAGGAGTT+CGG 0.512886 3.3:+21235374 None:intergenic
CTCGATGAAATAAGAGACAT+TGG 0.516322 3.3:+21235034 None:intergenic
ATAGATCATCAAGATTTGAT+GGG 0.516680 3.3:+21234132 None:intergenic
GAGAAGAGCCTGATGTAGGT+TGG 0.517531 3.3:-21233635 MS.gene46771:CDS
TGATCAATGCCGTCCACTTG+AGG 0.517576 3.3:+21233522 None:intergenic
GTGCCAGCTCTTCATTTACC+AGG 0.519169 3.3:-21234344 MS.gene46771:CDS
CACCGAGTTCTCTTGAGCTA+AGG 0.519854 3.3:+21233805 None:intergenic
GAATGGACCCAACCTACATC+AGG 0.520252 3.3:+21233627 None:intergenic
AAGACAGCAGATTTGTGTGT+TGG 0.520972 3.3:+21234047 None:intergenic
CATCATGTGGCGGCATATCA+CGG 0.522220 3.3:+21234279 None:intergenic
AAGTGGGGATCATCCCCTAT+TGG 0.522495 3.3:-21233735 MS.gene46771:CDS
GCCTTGTCCGATACTGAGCT+GGG 0.524492 3.3:+21234630 None:intergenic
AAGAGAGACCATACTGAGCC+TGG 0.528223 3.3:+21233937 None:intergenic
GGGGATAGAGGCTGTGCAAA+GGG 0.528233 3.3:+21234404 None:intergenic
ACTGAAATGGCACCAGGACG+GGG 0.532357 3.3:+21234185 None:intergenic
CTGAGATTTCTTCATCCCCT+CGG 0.532952 3.3:-21234103 MS.gene46771:CDS
ATATGTTGCAAGACTTTGAT+GGG 0.533657 3.3:-21234247 MS.gene46771:CDS
CACTAAGAGAAGATCTCAAA+CGG 0.535058 3.3:+21234303 None:intergenic
TTGGGTCCATTCCCTTGTCA+AGG 0.537395 3.3:-21233616 MS.gene46771:CDS
ATTATTGCCATTTGCAGATG+GGG 0.539077 3.3:+21234385 None:intergenic
GGGGACCCAACAGCTGAGAC+AGG 0.540557 3.3:+21233774 None:intergenic
TTCAGCAGATGGAATCGGGC+CGG 0.544086 3.3:+21233557 None:intergenic
ATCATGTGGCGGCATATCAC+GGG 0.546173 3.3:+21234280 None:intergenic
TTCACGCCTTCGAGCTTATG+GGG 0.546419 3.3:+21235121 None:intergenic
GGCTACACCCAGCTCAGTAT+CGG 0.547166 3.3:-21234637 MS.gene46771:CDS
TAGCAGTAGAAGCAGCTGAT+CGG 0.547990 3.3:+21234501 None:intergenic
ACCTTCAGCCGCGGATGAAG+AGG 0.549180 3.3:+21235594 None:intergenic
CTCTCTGACAGTGCTTCTGA+AGG 0.553902 3.3:-21235079 MS.gene46771:CDS
AATGCCGTCCACTTGAGGGT+TGG 0.553905 3.3:+21233527 None:intergenic
CGACCGACTGAAATGGCACC+AGG 0.554178 3.3:+21234179 None:intergenic
CGGACAAGGCTCTGCAAAGA+CGG 0.555061 3.3:-21234617 MS.gene46771:CDS
TAGGATATCAATACTCCCAT+AGG 0.558003 3.3:+21235348 None:intergenic
GACATGACATTTGTGTTGAT+GGG 0.559180 3.3:+21233990 None:intergenic
GAAGCAGCTGATCGGGGTGA+AGG 0.560891 3.3:+21234509 None:intergenic
ATGGTCTCTCTTCTCCTGGA+AGG 0.562685 3.3:-21233926 MS.gene46771:CDS
TGGGATCCTTGACAAGGGAA+TGG 0.563496 3.3:+21233610 None:intergenic
TACTGAGCCTGGTGGAATAG+GGG 0.568600 3.3:+21233948 None:intergenic
GACAGCAGATTTGTGTGTTG+GGG 0.570940 3.3:+21234049 None:intergenic
ATCATCTTCCTCTTCATCCG+CGG 0.571871 3.3:-21235602 MS.gene46771:CDS
AGGCTCTGCAAAGACGGTAT+GGG 0.573441 3.3:-21234611 MS.gene46771:CDS
CGTCCTGGTGCCATTTCAGT+CGG 0.576213 3.3:-21234182 MS.gene46771:CDS
GAGAAATTAACATCAGCCTC+AGG 0.578710 3.3:+21235307 None:intergenic
GATATGTGTGAATATGCTCA+TGG 0.578959 3.3:-21234674 MS.gene46771:CDS
TGCTTCTACTGCTAATGTCA+TGG 0.583456 3.3:-21234492 MS.gene46771:CDS
CGACTGAAATGGCACCAGGA+CGG 0.584820 3.3:+21234183 None:intergenic
AAAGAATCCCAACCCTCAAG+TGG 0.585936 3.3:-21233535 MS.gene46771:CDS
CCGAGAACTCATTGGAGAGA+GGG 0.587752 3.3:+21233881 None:intergenic
AGCATTAACCGAACCACTTG+AGG 0.589777 3.3:+21235246 None:intergenic
GATAAAGGAGCAGTTGAACC+AGG 0.590443 3.3:+21235010 None:intergenic
AGAGCTGGCACATTGGGCTG+TGG 0.592460 3.3:+21234356 None:intergenic
AATGGAGAAGAGCCTGATGT+AGG 0.593112 3.3:-21233639 MS.gene46771:CDS
GTTTCCATGCTCAAAAGAGG+TGG 0.593600 3.3:+21233662 None:intergenic
TGTAGAATTAACAGCTGAGT+CGG 0.595082 3.3:+21234940 None:intergenic
TGAGAGTATGCACGAGAACA+AGG 0.597066 3.3:+21234818 None:intergenic
CGGCAGGGTCAGAATACCGA+GGG 0.597848 3.3:+21234087 None:intergenic
AGCCTTAGCTCAAGAGAACT+CGG 0.599033 3.3:-21233807 MS.gene46771:CDS
GGATGATCCCCACTTAGACC+AGG 0.599519 3.3:+21233743 None:intergenic
AGCTGTAGTGAAACTTTCTA+GGG 0.601845 3.3:+21234741 None:intergenic
CAGGTGTGGGATCCTTGACA+AGG 0.602748 3.3:+21233604 None:intergenic
ACGGTATGGGTTGTAACCGA+AGG 0.606397 3.3:-21234598 MS.gene46771:CDS
AATCCCAACCCTCAAGTGGA+CGG 0.608931 3.3:-21233531 MS.gene46771:CDS
TGGGGATAGAGGCTGTGCAA+AGG 0.609012 3.3:+21234403 None:intergenic
TGGGTCTCCATCCTCTCCCG+TGG 0.609169 3.3:-21234975 MS.gene46771:CDS
GTTAATTGAAGGATGTGCGG+TGG 0.611177 3.3:-21235655 None:intergenic
CGGTATGGGTTGTAACCGAA+GGG 0.616814 3.3:-21234597 MS.gene46771:CDS
AAAATACAGAAGCCGCGGCA+GGG 0.617946 3.3:+21234072 None:intergenic
ACTTAGACCAGGAGTTAACA+GGG 0.618370 3.3:+21233754 None:intergenic
GACATCAGAGAGATTGATGA+TGG 0.618875 3.3:+21234434 None:intergenic
GTTGTTCCCCATAAGCTCGA+AGG 0.619870 3.3:-21235127 MS.gene46771:CDS
TAAATGAAGAGCTGGCACAT+TGG 0.622782 3.3:+21234349 None:intergenic
TCAGTTAATTGAAGGATGTG+CGG 0.623237 3.3:-21235658 None:intergenic
TGAAGGAACAGCAGATCCAG+TGG 0.625826 3.3:+21234526 None:intergenic
GCTGATGTTAATTTCTCCTG+TGG 0.627824 3.3:-21235301 MS.gene46771:CDS
TAGATCATCAAGATTTGATG+GGG 0.628777 3.3:+21234133 None:intergenic
TACTGCTAATGTCATGGACA+TGG 0.629491 3.3:-21234486 MS.gene46771:CDS
GTTAACTCCTGGTCTAAGTG+GGG 0.631889 3.3:-21233750 MS.gene46771:CDS
GCAGTAGAAGCAGCTGATCG+GGG 0.631967 3.3:+21234503 None:intergenic
ACCGAGAACTCATTGGAGAG+AGG 0.634355 3.3:+21233880 None:intergenic
GCACCGAACTCCTTTAATGG+TGG 0.636101 3.3:-21235377 MS.gene46771:CDS
AGAGCATCCCCTATTCCACC+AGG 0.647565 3.3:-21233955 MS.gene46771:CDS
ATCCTGGAGAGAATGCTCGA+AGG 0.652913 3.3:-21234769 MS.gene46771:CDS
ACCCAGCTCAGTATCGGACA+AGG 0.655881 3.3:-21234631 MS.gene46771:CDS
TGAAGTTGAACCTTCAGCCG+CGG 0.657656 3.3:+21235585 None:intergenic
GCTTATACTCTCATATCCTG+AGG 0.665811 3.3:-21235323 MS.gene46771:CDS
TGGGGAAAATACAGAAGCCG+CGG 0.666181 3.3:+21234067 None:intergenic
TCGGTATTCTGACCCTGCCG+CGG 0.669451 3.3:-21234084 MS.gene46771:CDS
AGATTGATGATGGTGAACCA+GGG 0.671674 3.3:+21234444 None:intergenic
GAACCTTGAATGAATACATG+CGG 0.683334 3.3:+21234843 None:intergenic
AGGTGTGGGATCCTTGACAA+GGG 0.686726 3.3:+21233605 None:intergenic
TTGTTGAAGTCATCATGTGG+CGG 0.687290 3.3:+21234269 None:intergenic
ATACATGCGGAATTCATCTG+TGG 0.687672 3.3:+21234856 None:intergenic
ATATTGTTGAAGTCATCATG+TGG 0.699812 3.3:+21234266 None:intergenic
GCGGCAGGGTCAGAATACCG+AGG 0.701862 3.3:+21234086 None:intergenic
AGAGACCATACTGAGCCTGG+TGG 0.702718 3.3:+21233940 None:intergenic
TGGTGCTGATATCAATTCGG+TGG 0.710852 3.3:-21235194 MS.gene46771:CDS
GAACAACAATAACATCGACA+GGG 0.720452 3.3:+21235155 None:intergenic
GATCCAGTGGACACATACAG+CGG 0.722026 3.3:+21234539 None:intergenic
CTTAGACCAGGAGTTAACAG+GGG 0.765437 3.3:+21233755 None:intergenic
GGCAGGGTCAGAATACCGAG+GGG 0.768209 3.3:+21234088 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATAGATCATCAAGATTTGA+TGG + chr3.3:21234982-21235001 None:intergenic 25.0%
! ATAGATCATCAAGATTTGAT+GGG + chr3.3:21234981-21235000 None:intergenic 25.0%
! GAAATCTTCAAAATCATTGT+TGG + chr3.3:21233624-21233643 None:intergenic 25.0%
!!! ATAAAATTGCTTTTATCAGC+TGG - chr3.3:21233896-21233915 MS.gene46771:CDS 25.0%
!!! CAATGATTTTGAAGATTTCA+AGG - chr3.3:21233625-21233644 MS.gene46771:CDS 25.0%
!!! TACATGCTATTTTTTATGTC+AGG + chr3.3:21234232-21234251 None:intergenic 25.0%
AATATGTTGCAAGACTTTGA+TGG - chr3.3:21234862-21234881 MS.gene46771:CDS 30.0%
ATATGTTGCAAGACTTTGAT+GGG - chr3.3:21234863-21234882 MS.gene46771:CDS 30.0%
ATATTGTTGAAGTCATCATG+TGG + chr3.3:21234847-21234866 None:intergenic 30.0%
CTTTATCATCTGCTGAAAAT+GGG - chr3.3:21234116-21234135 MS.gene46771:CDS 30.0%
GCTTCACTTATTAATGAAGT+TGG - chr3.3:21233665-21233684 MS.gene46771:CDS 30.0%
TAAGCTGGAAAAAGAATCAT+CGG + chr3.3:21233588-21233607 None:intergenic 30.0%
TAGATCATCAAGATTTGATG+GGG + chr3.3:21234980-21234999 None:intergenic 30.0%
TCTGTAAATCCAAATGACTT+TGG - chr3.3:21235411-21235430 MS.gene46771:CDS 30.0%
! GATATGAGAGTATAAGCTTT+AGG + chr3.3:21233784-21233803 None:intergenic 30.0%
! TTATTAATGAAGTTGGCTTC+TGG - chr3.3:21233672-21233691 MS.gene46771:CDS 30.0%
! TTTTTATGTCAGGAAGAGAT+GGG + chr3.3:21234222-21234241 None:intergenic 30.0%
!!! GAAAGTGATTTTGATTTGTC+AGG + chr3.3:21233482-21233501 None:intergenic 30.0%
!!! TTTTTTATGTCAGGAAGAGA+TGG + chr3.3:21234223-21234242 None:intergenic 30.0%
AGACATGACATTTGTGTTGA+TGG + chr3.3:21235124-21235143 None:intergenic 35.0%
AGCTGTAGTGAAACTTTCTA+GGG + chr3.3:21234372-21234391 None:intergenic 35.0%
ATTCCGCATGTATTCATTCA+AGG - chr3.3:21234264-21234283 MS.gene46771:CDS 35.0%
ATTGTTTCCATGCTCAAAAG+AGG + chr3.3:21235454-21235473 None:intergenic 35.0%
CACTAAGAGAAGATCTCAAA+CGG + chr3.3:21234810-21234829 None:intergenic 35.0%
CCTTTATCATCTGCTGAAAA+TGG - chr3.3:21234115-21234134 MS.gene46771:CDS 35.0%
CTAGTTTGATTAATGCTTCC+TGG + chr3.3:21234787-21234806 None:intergenic 35.0%
CTCGATGAAATAAGAGACAT+TGG + chr3.3:21234079-21234098 None:intergenic 35.0%
GAACAACAATAACATCGACA+GGG + chr3.3:21233958-21233977 None:intergenic 35.0%
GAACCTTGAATGAATACATG+CGG + chr3.3:21234270-21234289 None:intergenic 35.0%
GATATGTGTGAATATGCTCA+TGG - chr3.3:21234436-21234455 MS.gene46771:CDS 35.0%
TAGGATATCAATACTCCCAT+AGG + chr3.3:21233765-21233784 None:intergenic 35.0%
TGTAGAATTAACAGCTGAGT+CGG + chr3.3:21234173-21234192 None:intergenic 35.0%
TGTGTTTGACCAAAGTCATT+TGG + chr3.3:21235423-21235442 None:intergenic 35.0%
! ACCAATCAGCTTTTCCAATA+GGG + chr3.3:21235392-21235411 None:intergenic 35.0%
! ATTATTGCCATTTGCAGATG+GGG + chr3.3:21234728-21234747 None:intergenic 35.0%
! ATTTGTGTTGATGGGTGATA+AGG + chr3.3:21235115-21235134 None:intergenic 35.0%
! CATTATTGCCATTTGCAGAT+GGG + chr3.3:21234729-21234748 None:intergenic 35.0%
! CCATTTTCAGCAGATGATAA+AGG + chr3.3:21234118-21234137 None:intergenic 35.0%
! GACATGACATTTGTGTTGAT+GGG + chr3.3:21235123-21235142 None:intergenic 35.0%
! TCTTTTGAGCATGGAAACAA+TGG - chr3.3:21235453-21235472 MS.gene46771:CDS 35.0%
! TTCTTTTCAGCAGATGGAAT+CGG + chr3.3:21235561-21235580 None:intergenic 35.0%
! TTTGGTTAGATCCCTTTTGA+CGG + chr3.3:21233703-21233722 None:intergenic 35.0%
!! ATGCCCTGATTTTAGAAAAG+GGG - chr3.3:21234399-21234418 MS.gene46771:CDS 35.0%
!! CATGCCCTGATTTTAGAAAA+GGG - chr3.3:21234398-21234417 MS.gene46771:CDS 35.0%
!!! AAGCCCCTTTTCTAAAATCA+GGG + chr3.3:21234405-21234424 None:intergenic 35.0%
AAATGAAGAGCTGGCACATT+GGG + chr3.3:21234763-21234782 None:intergenic 40.0%
AAGACAGCAGATTTGTGTGT+TGG + chr3.3:21235066-21235085 None:intergenic 40.0%
ACTTAGACCAGGAGTTAACA+GGG + chr3.3:21235359-21235378 None:intergenic 40.0%
AGACAGCAGATTTGTGTGTT+GGG + chr3.3:21235065-21235084 None:intergenic 40.0%
AGCTTATGGGGAACAACAAT+AGG + chr3.3:21233980-21233999 None:intergenic 40.0%
ATACATGCGGAATTCATCTG+TGG + chr3.3:21234257-21234276 None:intergenic 40.0%
CAGCTGTAGTGAAACTTTCT+AGG + chr3.3:21234373-21234392 None:intergenic 40.0%
CTGCAAATGGCAATAATGCT+TGG - chr3.3:21234731-21234750 MS.gene46771:CDS 40.0%
GACATCAGAGAGATTGATGA+TGG + chr3.3:21234679-21234698 None:intergenic 40.0%
GAGAAATTAACATCAGCCTC+AGG + chr3.3:21233806-21233825 None:intergenic 40.0%
GCTGATGTTAATTTCTCCTG+TGG - chr3.3:21233809-21233828 MS.gene46771:CDS 40.0%
GCTTATACTCTCATATCCTG+AGG - chr3.3:21233787-21233806 MS.gene46771:CDS 40.0%
GGAACAACAATAACATCGAC+AGG + chr3.3:21233959-21233978 None:intergenic 40.0%
TAAATGAAGAGCTGGCACAT+TGG + chr3.3:21234764-21234783 None:intergenic 40.0%
TACTGCTAATGTCATGGACA+TGG - chr3.3:21234624-21234643 MS.gene46771:CDS 40.0%
TGCTTCTACTGCTAATGTCA+TGG - chr3.3:21234618-21234637 MS.gene46771:CDS 40.0%
TGTTAACTCCTGGTCTAAGT+GGG - chr3.3:21235359-21235378 MS.gene46771:CDS 40.0%
TTCTCTTTCTTCTCAGGTGT+GGG + chr3.3:21235522-21235541 None:intergenic 40.0%
TTCTGGTATGTCCGTCAAAA+GGG - chr3.3:21233689-21233708 MS.gene46771:CDS 40.0%
TTGTTGAAGTCATCATGTGG+CGG + chr3.3:21234844-21234863 None:intergenic 40.0%
! ACAGCTGAGTCGGTAAATTT+TGG + chr3.3:21234163-21234182 None:intergenic 40.0%
! AGTGCTTTTATCAGTTCCAC+AGG + chr3.3:21233828-21233847 None:intergenic 40.0%
! CCAATCAGCTTTTCCAATAG+GGG + chr3.3:21235391-21235410 None:intergenic 40.0%
! GACCAATCAGCTTTTCCAAT+AGG + chr3.3:21235393-21235412 None:intergenic 40.0%
! GCATTATTGCCATTTGCAGA+TGG + chr3.3:21234730-21234749 None:intergenic 40.0%
! TCTCTTATTTCATCGAGTCC+TGG - chr3.3:21234082-21234101 MS.gene46771:CDS 40.0%
! TCTTTTCAGCAGATGGAATC+GGG + chr3.3:21235560-21235579 None:intergenic 40.0%
! TTGGGATTCTTTTCAGCAGA+TGG + chr3.3:21235567-21235586 None:intergenic 40.0%
!! AGATTGATGATGGTGAACCA+GGG + chr3.3:21234669-21234688 None:intergenic 40.0%
!! AGCTGGTGCTGATATCAATT+CGG - chr3.3:21233913-21233932 MS.gene46771:CDS 40.0%
!! CCATGCCCTGATTTTAGAAA+AGG - chr3.3:21234397-21234416 MS.gene46771:CDS 40.0%
!! TTCGGTGCTCAAGAACAATT+TGG + chr3.3:21233721-21233740 None:intergenic 40.0%
!!! ATGGGGTTAGTGTTTTAGAG+CGG + chr3.3:21234963-21234982 None:intergenic 40.0%
!!! CAAGCCCCTTTTCTAAAATC+AGG + chr3.3:21234406-21234425 None:intergenic 40.0%
!!! CCTTTTCTAAAATCAGGGCA+TGG + chr3.3:21234400-21234419 None:intergenic 40.0%
!!! GGCATTGATCACTCTGTTTT+GGG - chr3.3:21235600-21235619 MS.gene46771:CDS 40.0%
AAAGAATCCCAACCCTCAAG+TGG - chr3.3:21235575-21235594 MS.gene46771:CDS 45.0%
AAAGAGAAGCTTGCAGGTTC+CGG - chr3.3:21235534-21235553 MS.gene46771:CDS 45.0%
AACAATCCTGTCTCAGCTGT+TGG - chr3.3:21235330-21235349 MS.gene46771:CDS 45.0%
AAGGATGTCGCCAAGAAGTA+TGG - chr3.3:21235203-21235222 MS.gene46771:CDS 45.0%
AATGGAGAAGAGCCTGATGT+AGG - chr3.3:21235471-21235490 MS.gene46771:CDS 45.0%
ACAATCCTGTCTCAGCTGTT+GGG - chr3.3:21235331-21235350 MS.gene46771:CDS 45.0%
AGAAGAGCCTGATGTAGGTT+GGG - chr3.3:21235476-21235495 MS.gene46771:CDS 45.0%
AGCATTAACCGAACCACTTG+AGG + chr3.3:21233867-21233886 None:intergenic 45.0%
AGCCTTAGCTCAAGAGAACT+CGG - chr3.3:21235303-21235322 MS.gene46771:CDS 45.0%
ATACTGAGCCTGGTGGAATA+GGG + chr3.3:21235166-21235185 None:intergenic 45.0%
ATCATCTTCCTCTTCATCCG+CGG - chr3.3:21233508-21233527 MS.gene46771:CDS 45.0%
CACTTAGACCAGGAGTTAAC+AGG + chr3.3:21235360-21235379 None:intergenic 45.0%
CAGCCACCATTAAAGGAGTT+CGG + chr3.3:21233739-21233758 None:intergenic 45.0%
CCCCTATTGGAAAAGCTGAT+TGG - chr3.3:21235388-21235407 MS.gene46771:CDS 45.0%
CTCGTGCATACTCTCATGAT+TGG - chr3.3:21234299-21234318 MS.gene46771:CDS 45.0%
CTGAGATTTCTTCATCCCCT+CGG - chr3.3:21235007-21235026 MS.gene46771:CDS 45.0%
CTGTTAACTCCTGGTCTAAG+TGG - chr3.3:21235358-21235377 MS.gene46771:CDS 45.0%
CTTAGACCAGGAGTTAACAG+GGG + chr3.3:21235358-21235377 None:intergenic 45.0%
CTTCCTGGTAAATGAAGAGC+TGG + chr3.3:21234772-21234791 None:intergenic 45.0%
CTTCTCTTTCTTCTCAGGTG+TGG + chr3.3:21235523-21235542 None:intergenic 45.0%
CTTCTGGTATGTCCGTCAAA+AGG - chr3.3:21233688-21233707 MS.gene46771:CDS 45.0%
GACAGCAGATTTGTGTGTTG+GGG + chr3.3:21235064-21235083 None:intergenic 45.0%
GAGAAGAAAGAGAAGCTTGC+AGG - chr3.3:21235528-21235547 MS.gene46771:CDS 45.0%
GATAAAGGAGCAGTTGAACC+AGG + chr3.3:21234103-21234122 None:intergenic 45.0%
GCAAGCTTCTCTTTCTTCTC+AGG + chr3.3:21235528-21235547 None:intergenic 45.0%
GTTAACTCCTGGTCTAAGTG+GGG - chr3.3:21235360-21235379 MS.gene46771:CDS 45.0%
GTTTCCATGCTCAAAAGAGG+TGG + chr3.3:21235451-21235470 None:intergenic 45.0%
TAATGGTGGCTGCTTCCTAT+GGG - chr3.3:21233747-21233766 MS.gene46771:CDS 45.0%
TAGCAGTAGAAGCAGCTGAT+CGG + chr3.3:21234612-21234631 None:intergenic 45.0%
TAGGAAGCAGCCACCATTAA+AGG + chr3.3:21233746-21233765 None:intergenic 45.0%
TCCAATGAGTTCTCGGTTGT+CGG - chr3.3:21235236-21235255 MS.gene46771:CDS 45.0%
TTAATGGTGGCTGCTTCCTA+TGG - chr3.3:21233746-21233765 MS.gene46771:CDS 45.0%
TTCTCTCCAGGATGCACAAA+AGG + chr3.3:21234334-21234353 None:intergenic 45.0%
TTTCACGCCTTCGAGCTTAT+GGG + chr3.3:21233993-21234012 None:intergenic 45.0%
! AGATCCACCTCTTTTGAGCA+TGG - chr3.3:21235444-21235463 MS.gene46771:CDS 45.0%
! ATGATGGTGAACCAGGGAAA+AGG + chr3.3:21234663-21234682 None:intergenic 45.0%
! TGAGAGTATGCACGAGAACA+AGG + chr3.3:21234295-21234314 None:intergenic 45.0%
! TGATGGGTGATAAGGAGCTT+TGG + chr3.3:21235107-21235126 None:intergenic 45.0%
! TTTTCACGCCTTCGAGCTTA+TGG + chr3.3:21233994-21234013 None:intergenic 45.0%
!! AGCTTTGGAGCTGTTGAAAC+TGG + chr3.3:21235092-21235111 None:intergenic 45.0%
!! GAGATTGATGATGGTGAACC+AGG + chr3.3:21234670-21234689 None:intergenic 45.0%
!! TGAGCACCGAACTCCTTTAA+TGG - chr3.3:21233730-21233749 MS.gene46771:CDS 45.0%
!! TGGTGCTGATATCAATTCGG+TGG - chr3.3:21233916-21233935 MS.gene46771:CDS 45.0%
!!! ATCACTCTGTTTTGGGAGCT+TGG - chr3.3:21235607-21235626 MS.gene46771:CDS 45.0%
!!! CGGCATTGATCACTCTGTTT+TGG - chr3.3:21235599-21235618 MS.gene46771:CDS 45.0%
!!! GTCGGTAAATTTTGGAGCCA+CGG + chr3.3:21234155-21234174 None:intergenic 45.0%
!!! TCGGTAAATTTTGGAGCCAC+GGG + chr3.3:21234154-21234173 None:intergenic 45.0%
AAAAGGGGCTTGCAGACGTT+CGG - chr3.3:21234414-21234433 MS.gene46771:CDS 50.0%
AAAATACAGAAGCCGCGGCA+GGG + chr3.3:21235041-21235060 None:intergenic 50.0%
AAGAGAGACCATACTGAGCC+TGG + chr3.3:21235176-21235195 None:intergenic 50.0%
AAGGCTCTGCAAAGACGGTA+TGG - chr3.3:21234498-21234517 MS.gene46771:CDS 50.0%
AAGTGGGGATCATCCCCTAT+TGG - chr3.3:21235375-21235394 MS.gene46771:CDS 50.0%
AATCCCAACCCTCAAGTGGA+CGG - chr3.3:21235579-21235598 MS.gene46771:CDS 50.0%
ACCGAGAACTCATTGGAGAG+AGG + chr3.3:21235233-21235252 None:intergenic 50.0%
AGCAGTAGAAGCAGCTGATC+GGG + chr3.3:21234611-21234630 None:intergenic 50.0%
AGGCTCTGCAAAGACGGTAT+GGG - chr3.3:21234499-21234518 MS.gene46771:CDS 50.0%
AGGGGATGCTCTACGTTTGT+AGG + chr3.3:21235147-21235166 None:intergenic 50.0%
AGGTGTGGGATCCTTGACAA+GGG + chr3.3:21235508-21235527 None:intergenic 50.0%
ATCATGTGGCGGCATATCAC+GGG + chr3.3:21234833-21234852 None:intergenic 50.0%
ATCCTGGAGAGAATGCTCGA+AGG - chr3.3:21234341-21234360 MS.gene46771:CDS 50.0%
ATGGTCTCTCTTCTCCTGGA+AGG - chr3.3:21235184-21235203 MS.gene46771:CDS 50.0%
CACCGAGTTCTCTTGAGCTA+AGG + chr3.3:21235308-21235327 None:intergenic 50.0%
CAGTATGGTCTCTCTTCTCC+TGG - chr3.3:21235180-21235199 MS.gene46771:CDS 50.0%
CATACTGAGCCTGGTGGAAT+AGG + chr3.3:21235167-21235186 None:intergenic 50.0%
CATCATGTGGCGGCATATCA+CGG + chr3.3:21234834-21234853 None:intergenic 50.0%
CCATTTGCAGATGGGGATAG+AGG + chr3.3:21234721-21234740 None:intergenic 50.0%
CCCTCTCTCCAATGAGTTCT+CGG - chr3.3:21235229-21235248 MS.gene46771:CDS 50.0%
CCGAGAACTCATTGGAGAGA+GGG + chr3.3:21235232-21235251 None:intergenic 50.0%
CCTCTATCCCCATCTGCAAA+TGG - chr3.3:21234718-21234737 MS.gene46771:CDS 50.0%
CTATTCCACCAGGCTCAGTA+TGG - chr3.3:21235165-21235184 MS.gene46771:CDS 50.0%
CTCTCTGACAGTGCTTCTGA+AGG - chr3.3:21234031-21234050 MS.gene46771:CDS 50.0%
GAATGGACCCAACCTACATC+AGG + chr3.3:21235486-21235505 None:intergenic 50.0%
GAGAAGAGCCTGATGTAGGT+TGG - chr3.3:21235475-21235494 MS.gene46771:CDS 50.0%
GAGAGGGCTTCCATACTTCT+TGG + chr3.3:21235216-21235235 None:intergenic 50.0%
GATCAATGCCGTCCACTTGA+GGG + chr3.3:21235590-21235609 None:intergenic 50.0%
GATCCAGTGGACACATACAG+CGG + chr3.3:21234574-21234593 None:intergenic 50.0%
GCACCGAACTCCTTTAATGG+TGG - chr3.3:21233733-21233752 MS.gene46771:CDS 50.0%
GTGCCAGCTCTTCATTTACC+AGG - chr3.3:21234766-21234785 MS.gene46771:CDS 50.0%
GTTGTTCCCCATAAGCTCGA+AGG - chr3.3:21233983-21234002 MS.gene46771:CDS 50.0%
TACTGAGCCTGGTGGAATAG+GGG + chr3.3:21235165-21235184 None:intergenic 50.0%
TCAGGAAGAGATGGGTCAAC+TGG + chr3.3:21234214-21234233 None:intergenic 50.0%
TGAAGGAACAGCAGATCCAG+TGG + chr3.3:21234587-21234606 None:intergenic 50.0%
TGAAGTTGAACCTTCAGCCG+CGG + chr3.3:21233528-21233547 None:intergenic 50.0%
TGATCAATGCCGTCCACTTG+AGG + chr3.3:21235591-21235610 None:intergenic 50.0%
TGGGATCCTTGACAAGGGAA+TGG + chr3.3:21235503-21235522 None:intergenic 50.0%
TGGGGAAAATACAGAAGCCG+CGG + chr3.3:21235046-21235065 None:intergenic 50.0%
TTCACGCCTTCGAGCTTATG+GGG + chr3.3:21233992-21234011 None:intergenic 50.0%
TTGGGTCCATTCCCTTGTCA+AGG - chr3.3:21235494-21235513 MS.gene46771:CDS 50.0%
! ACGGTATGGGTTGTAACCGA+AGG - chr3.3:21234512-21234531 MS.gene46771:CDS 50.0%
! CGGTATGGGTTGTAACCGAA+GGG - chr3.3:21234513-21234532 MS.gene46771:CDS 50.0%
! CTCATGGAGTATTCGAGTGC+TGG - chr3.3:21234452-21234471 MS.gene46771:CDS 50.0%
! GAGCGAAAAAGCACACCCTT+CGG + chr3.3:21234531-21234550 None:intergenic 50.0%
! GAGTGTCCTTTTGTGCATCC+TGG - chr3.3:21234325-21234344 MS.gene46771:CDS 50.0%
! GGAAGCATGTTCGAGTAAGC+TGG + chr3.3:21233603-21233622 None:intergenic 50.0%
!!! AAATTTTGGAGCCACGGGAG+AGG + chr3.3:21234149-21234168 None:intergenic 50.0%
AATGCCGTCCACTTGAGGGT+TGG + chr3.3:21235586-21235605 None:intergenic 55.0%
ACTGAAATGGCACCAGGACG+GGG + chr3.3:21234928-21234947 None:intergenic 55.0%
AGAGACCATACTGAGCCTGG+TGG + chr3.3:21235173-21235192 None:intergenic 55.0%
ATGCCGTCCACTTGAGGGTT+GGG + chr3.3:21235585-21235604 None:intergenic 55.0%
CAGGTGTGGGATCCTTGACA+AGG + chr3.3:21235509-21235528 None:intergenic 55.0%
CGACTGAAATGGCACCAGGA+CGG + chr3.3:21234930-21234949 None:intergenic 55.0%
CGGACAAGGCTCTGCAAAGA+CGG - chr3.3:21234493-21234512 MS.gene46771:CDS 55.0%
CTCCTTCGAGCATTCTCTCC+AGG + chr3.3:21234346-21234365 None:intergenic 55.0%
CTGTGCTGCCTCAAGTGGTT+CGG - chr3.3:21233856-21233875 MS.gene46771:CDS 55.0%
CTTCACTGTGCTGCCTCAAG+TGG - chr3.3:21233851-21233870 MS.gene46771:CDS 55.0%
CTTCTTGGCGACATCCTTCC+AGG + chr3.3:21235201-21235220 None:intergenic 55.0%
GAAAATACAGAAGCCGCGGC+AGG + chr3.3:21235042-21235061 None:intergenic 55.0%
GACTGAAATGGCACCAGGAC+GGG + chr3.3:21234929-21234948 None:intergenic 55.0%
GCAGTAGAAGCAGCTGATCG+GGG + chr3.3:21234610-21234629 None:intergenic 55.0%
GCCAGATCGACCGACTGAAA+TGG + chr3.3:21234941-21234960 None:intergenic 55.0%
GCCATTTCAGTCGGTCGATC+TGG - chr3.3:21234937-21234956 MS.gene46771:CDS 55.0%
GCCGACAACCGAGAACTCAT+TGG + chr3.3:21235240-21235259 None:intergenic 55.0%
GCCTTGTCCGATACTGAGCT+GGG + chr3.3:21234483-21234502 None:intergenic 55.0%
GGATGATCCCCACTTAGACC+AGG + chr3.3:21235370-21235389 None:intergenic 55.0%
GGCTACACCCAGCTCAGTAT+CGG - chr3.3:21234473-21234492 MS.gene46771:CDS 55.0%
GGGGATAGAGGCTGTGCAAA+GGG + chr3.3:21234709-21234728 None:intergenic 55.0%
TGGGGATAGAGGCTGTGCAA+AGG + chr3.3:21234710-21234729 None:intergenic 55.0%
TTCAGCAGATGGAATCGGGC+CGG + chr3.3:21235556-21235575 None:intergenic 55.0%
TTGGGTCCCCTGTTAACTCC+TGG - chr3.3:21235349-21235368 MS.gene46771:CDS 55.0%
! ACCCAGCTCAGTATCGGACA+AGG - chr3.3:21234479-21234498 MS.gene46771:CDS 55.0%
! AGAGCATCCCCTATTCCACC+AGG - chr3.3:21235155-21235174 MS.gene46771:CDS 55.0%
! AGCCTTGTCCGATACTGAGC+TGG + chr3.3:21234484-21234503 None:intergenic 55.0%
! GCTGCTATGAGCCTTTTCCC+TGG - chr3.3:21234649-21234668 MS.gene46771:CDS 55.0%
! TTGGCTTGAGCAACTGCAGC+TGG - chr3.3:21235626-21235645 MS.gene46771:CDS 55.0%
!! CGTCCTGGTGCCATTTCAGT+CGG - chr3.3:21234928-21234947 MS.gene46771:CDS 55.0%
ACCTTCAGCCGCGGATGAAG+AGG + chr3.3:21233519-21233538 None:intergenic 60.0%
AGAGCTGGCACATTGGGCTG+TGG + chr3.3:21234757-21234776 None:intergenic 60.0%
CGACCGACTGAAATGGCACC+AGG + chr3.3:21234934-21234953 None:intergenic 60.0%
CGGCAGGGTCAGAATACCGA+GGG + chr3.3:21235026-21235045 None:intergenic 60.0%
CGTCCGCTGTATGTGTCCAC+TGG - chr3.3:21234568-21234587 MS.gene46771:CDS 60.0%
GAAGCAGCTGATCGGGGTGA+AGG + chr3.3:21234604-21234623 None:intergenic 60.0%
GGCAGGGTCAGAATACCGAG+GGG + chr3.3:21235025-21235044 None:intergenic 60.0%
TACAGCGGACGCAGCTCTTC+AGG + chr3.3:21234559-21234578 None:intergenic 60.0%
TCCTCTTCATCCGCGGCTGA+AGG - chr3.3:21233515-21233534 MS.gene46771:CDS 60.0%
TCGGTATTCTGACCCTGCCG+CGG - chr3.3:21235026-21235045 MS.gene46771:CDS 60.0%
TGTTTCTCACAGCCCCGTCC+TGG - chr3.3:21234913-21234932 MS.gene46771:CDS 60.0%
! TTTGGAGCCACGGGAGAGGA+TGG + chr3.3:21234145-21234164 None:intergenic 60.0%
GCGGCAGGGTCAGAATACCG+AGG + chr3.3:21235027-21235046 None:intergenic 65.0%
GGGGACCCAACAGCTGAGAC+AGG + chr3.3:21235339-21235358 None:intergenic 65.0%
TGGGTCTCCATCCTCTCCCG+TGG - chr3.3:21234135-21234154 MS.gene46771:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 21233467 21235665 21233467 ID=MS.gene46771
chr3.3 mRNA 21233467 21235665 21233467 ID=MS.gene46771.t1;Parent=MS.gene46771
chr3.3 exon 21233467 21235665 21233467 ID=MS.gene46771.t1.exon1;Parent=MS.gene46771.t1
chr3.3 CDS 21233467 21235665 21233467 ID=cds.MS.gene46771.t1;Parent=MS.gene46771.t1
Gene Sequence

>MS.gene46771

ATGTGCGGTGGACCTGACAAATCAAAATCACTTTCAACTTCATCATCTTCCTCTTCATCCGCGGCTGAAGGTTCAACTTCAAATACTGTCAAAGACATGAAAAATCTAACTGTTCGTACCGATGATTCTTTTTCCAGCTTACTCGAACATGCTTCCAACAATGATTTTGAAGATTTCAAGGTAGCTCTAGATAGTGATGCTTCACTTATTAATGAAGTTGGCTTCTGGTATGTCCGTCAAAAGGGATCTAACCAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTGGCTGCTTCCTATGGGAGTATTGATATCCTAAAGCTTATACTCTCATATCCTGAGGCTGATGTTAATTTCTCCTGTGGAACTGATAAAAGCACTGCTCTTCACTGTGCTGCCTCAAGTGGTTCGGTTAATGCTGTTGACGCTATAAAATTGCTTTTATCAGCTGGTGCTGATATCAATTCGGTGGATGCTAATGAGAAACGCCCTGTCGATGTTATTGTTGTTCCTATTGTTGTTCCCCATAAGCTCGAAGGCGTGAAAACAATTCTTGAAGAACTTCTCTCTGACAGTGCTTCTGAAGGATCTGTTGATGATTGCTCTCTTCCAATGTCTCTTATTTCATCGAGTCCTGGTTCAACTGCTCCTTTATCATCTGCTGAAAATGGGTCTCCATCCTCTCCCGTGGCTCCAAAATTTACCGACTCAGCTGTTAATTCTACATCAGAGAAGAAAGAGTATCCAGTTGACCCATCTCTTCCTGACATAAAAAATAGCATGTATGCCACAGATGAATTCCGCATGTATTCATTCAAGGTTCGTCCTTGTTCTCGTGCATACTCTCATGATTGGACAGAGTGTCCTTTTGTGCATCCTGGAGAGAATGCTCGAAGGAGAGACCCTAGAAAGTTTCACTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGTTCGGATATGTGTGAATATGCTCATGGAGTATTCGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAAGACGGTATGGGTTGTAACCGAAGGGTGTGCTTTTTCGCTCACTCACCTGAAGAGCTGCGTCCGCTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCCCGATCAGCTGCTTCTACTGCTAATGTCATGGACATGGCTGCTGCTATGAGCCTTTTCCCTGGTTCACCATCATCAATCTCTCTGATGTCTCAATCACCCTTTGCACAGCCTCTATCCCCATCTGCAAATGGCAATAATGCTTGGCCACAGCCCAATGTGCCAGCTCTTCATTTACCAGGAAGCATTAATCAAACTAGCCGTTTGAGATCTTCTCTTAGTGCCCGTGATATGCCGCCACATGATGACTTCAACAATATGTTGCAAGACTTTGATGGGCAGCAGCAGATACTGAATGACTTGAGCTGTTTCTCACAGCCCCGTCCTGGTGCCATTTCAGTCGGTCGATCTGGCCGCTCTAAAACACTAACCCCATCAAATCTTGATGATCTATTTTGTGCTGAGATTTCTTCATCCCCTCGGTATTCTGACCCTGCCGCGGCTTCTGTATTTTCCCCAACACACAAATCTGCTGTCTTCAACCAGTTTCAACAGCTCCAAAGCTCCTTATCACCCATCAACACAAATGTCATGTCTCCTACAAACGTAGAGCATCCCCTATTCCACCAGGCTCAGTATGGTCTCTCTTCTCCTGGAAGGATGTCGCCAAGAAGTATGGAAGCCCTCTCTCCAATGAGTTCTCGGTTGTCGGCTTTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAACAGCTGCGTAGCCTTAGCTCAAGAGAACTCGGTGCTAACAATCCTGTCTCAGCTGTTGGGTCCCCTGTTAACTCCTGGTCTAAGTGGGGATCATCCCCTATTGGAAAAGCTGATTGGTCTGTAAATCCAAATGACTTTGGTCAAACACAGAGATCCACCTCTTTTGAGCATGGAAACAATGGAGAAGAGCCTGATGTAGGTTGGGTCCATTCCCTTGTCAAGGATCCCACACCTGAGAAGAAAGAGAAGCTTGCAGGTTCCGGCCCGATTCCATCTGCTGAAAAGAATCCCAACCCTCAAGTGGACGGCATTGATCACTCTGTTTTGGGAGCTTGGCTTGAGCAACTGCAGCTGGATCAACTTGTAGTCTAG
Protein sequence

>MS.gene46771.t1

MCGGPDKSKSLSTSSSSSSSAAEGSTSNTVKDMKNLTVRTDDSFSSLLEHASNNDFEDFKVALDSDASLINEVGFWYVRQKGSNQIVLEHRTPLMVAASYGSIDILKLILSYPEADVNFSCGTDKSTALHCAASSGSVNAVDAIKLLLSAGADINSVDANEKRPVDVIVVPIVVPHKLEGVKTILEELLSDSASEGSVDDCSLPMSLISSSPGSTAPLSSAENGSPSSPVAPKFTDSAVNSTSEKKEYPVDPSLPDIKNSMYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRSDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHSPEELRPLYVSTGSAVPSPRSAASTANVMDMAAAMSLFPGSPSSISLMSQSPFAQPLSPSANGNNAWPQPNVPALHLPGSINQTSRLRSSLSARDMPPHDDFNNMLQDFDGQQQILNDLSCFSQPRPGAISVGRSGRSKTLTPSNLDDLFCAEISSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPTNVEHPLFHQAQYGLSSPGRMSPRSMEALSPMSSRLSAFAQREKQQQQQQLRSLSSRELGANNPVSAVGSPVNSWSKWGSSPIGKADWSVNPNDFGQTQRSTSFEHGNNGEEPDVGWVHSLVKDPTPEKKEKLAGSGPIPSAEKNPNPQVDGIDHSVLGAWLEQLQLDQLVV