Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46901.t1 | XP_003603496.1 | 99.3 | 273 | 2 | 0 | 1 | 273 | 1 | 273 | 3.30E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46901.t1 | P50346 | 93.0 | 273 | 19 | 0 | 1 | 273 | 1 | 273 | 2.0e-136 | 486.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46901.t1 | G7JC94 | 99.3 | 273 | 2 | 0 | 1 | 273 | 1 | 273 | 2.4e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene46901 | 0.826915 | 2.09E-54 | -1.69E-46 |
| MS.gene052664 | MS.gene46901 | 0.818516 | 1.88E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46901.t1 | MTR_3g108280 | 99.267 | 273 | 2 | 0 | 1 | 273 | 1 | 273 | 0.0 | 546 |
| MS.gene46901.t1 | MTR_5g082180 | 95.604 | 273 | 12 | 0 | 1 | 273 | 1 | 273 | 0.0 | 524 |
| MS.gene46901.t1 | MTR_7g022400 | 68.269 | 104 | 32 | 1 | 11 | 113 | 7 | 110 | 4.06e-42 | 143 |
| MS.gene46901.t1 | MTR_7g112750 | 67.089 | 79 | 25 | 1 | 11 | 88 | 7 | 85 | 3.34e-27 | 104 |
| MS.gene46901.t1 | MTR_3g074840 | 64.706 | 85 | 8 | 2 | 86 | 169 | 1 | 64 | 5.27e-22 | 89.0 |
| MS.gene46901.t1 | MTR_1g044130 | 96.774 | 31 | 1 | 0 | 243 | 273 | 1 | 31 | 2.01e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46901.t1 | AT3G09200 | 89.299 | 271 | 29 | 0 | 3 | 273 | 2 | 272 | 3.87e-176 | 488 |
| MS.gene46901.t1 | AT2G40010 | 87.912 | 273 | 33 | 0 | 1 | 273 | 1 | 273 | 4.27e-175 | 485 |
| MS.gene46901.t1 | AT3G11250 | 88.192 | 271 | 32 | 0 | 3 | 273 | 2 | 272 | 2.51e-174 | 484 |
| MS.gene46901.t1 | AT3G09200 | 78.229 | 271 | 26 | 1 | 3 | 273 | 2 | 239 | 6.77e-146 | 410 |
| MS.gene46901.t1 | AT1G25260 | 22.685 | 216 | 146 | 4 | 10 | 214 | 16 | 221 | 1.62e-11 | 63.2 |
Find 81 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAGACCTCTTTCTTCC+AGG | 0.252116 | 3.1:+86304155 | MS.gene46901:CDS |
| CAGCGTTGACAACAAGGATT+TGG | 0.257235 | 3.1:-86302698 | None:intergenic |
| CATGGTCACTTCACTTTCAT+TGG | 0.278087 | 3.1:+86304487 | MS.gene46901:CDS |
| ATCGTAGTTCTGCTTCTTCT+CGG | 0.310851 | 3.1:-86302643 | None:intergenic |
| CACAGTACCCTTGTTAATCT+TGG | 0.311903 | 3.1:-86304261 | None:intergenic |
| TTGTAGCGAAGTTTGCTATT+GGG | 0.333941 | 3.1:+86304459 | MS.gene46901:CDS |
| GCTGCATTGCTTGCCAAGTT+AGG | 0.382522 | 3.1:+86304341 | MS.gene46901:CDS |
| TCCTTAACCTTGTCTGCCTC+AGG | 0.389206 | 3.1:-86304605 | None:intergenic |
| CTTGTAGCGAAGTTTGCTAT+TGG | 0.396386 | 3.1:+86304458 | MS.gene46901:CDS |
| GTTGAGAAAAGCATTGTTGC+CGG | 0.397292 | 3.1:-86302838 | None:intergenic |
| GTTCTGCTTCTTCTCGGCTT+TGG | 0.398033 | 3.1:-86302637 | None:intergenic |
| AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 3.1:+86304083 | MS.gene46901:CDS |
| AAAAGCAAGAACGTTCTTGT+AGG | 0.409408 | 3.1:-86304558 | None:intergenic |
| GGAGGAACAACGACATCAAT+TGG | 0.410263 | 3.1:-86304111 | None:intergenic |
| TACCCTTGTTAATCTTGGTT+GGG | 0.415505 | 3.1:-86304256 | None:intergenic |
| GGGTCGAGCCCTGTGTTGCC+TGG | 0.431244 | 3.1:-86304132 | None:intergenic |
| CCTTTCTTAATGAGTTCCAC+AGG | 0.432079 | 3.1:-86304296 | None:intergenic |
| TGGTGACTCCGTTGTTCTCA+TGG | 0.440885 | 3.1:+86302767 | MS.gene46901:CDS |
| TGCCTCAGGGAAATAATATT+CGG | 0.446178 | 3.1:-86304591 | None:intergenic |
| TCAGTGAGGTCAAGAACCTC+AGG | 0.450763 | 3.1:-86304428 | None:intergenic |
| GACCACAAGCCCGTATGAAA+AGG | 0.451799 | 3.1:-86304372 | None:intergenic |
| AGCGTTGACAACAAGGATTT+GGG | 0.451933 | 3.1:-86302697 | None:intergenic |
| AGAAAACTAACGACAAGAAG+AGG | 0.456056 | 3.1:-86302867 | None:intergenic |
| CCCTGAGGCAGACAAGGTTA+AGG | 0.465890 | 3.1:+86304604 | MS.gene46901:CDS |
| TTTCACTAAAGGTGACTTGA+AGG | 0.469610 | 3.1:+86303728 | MS.gene46901:CDS |
| ATTGATGTCGTTGTTCCTCC+AGG | 0.473267 | 3.1:+86304114 | MS.gene46901:CDS |
| TCAGCTACAGAACATTCGTC+AGG | 0.474511 | 3.1:+86302737 | MS.gene46901:CDS |
| GAGGAGCAGCGGCAAGTGTT+GGG | 0.477710 | 3.1:-86304520 | None:intergenic |
| TGTAGCGAAGTTTGCTATTG+GGG | 0.487853 | 3.1:+86304460 | MS.gene46901:CDS |
| TGAGGAGCAGCGGCAAGTGT+TGG | 0.489867 | 3.1:-86304521 | None:intergenic |
| GTCCTCTCTGTTTATGACAA+TGG | 0.495884 | 3.1:+86304392 | MS.gene46901:CDS |
| GTTTGCTATTGGGGTTTCCA+TGG | 0.497232 | 3.1:+86304469 | MS.gene46901:CDS |
| TGCTTGCCAAGTTAGGCATT+AGG | 0.501788 | 3.1:+86304348 | MS.gene46901:CDS |
| GGGTGTATTCATCGATAAGC+TGG | 0.506884 | 3.1:-86302677 | None:intergenic |
| GTACCCTTGTTAATCTTGGT+TGG | 0.507788 | 3.1:-86304257 | None:intergenic |
| GCAACCAAACCAACACGAGC+AGG | 0.521300 | 3.1:-86304087 | None:intergenic |
| CGTATGCACGCTGAGAAAAC+CGG | 0.521724 | 3.1:+86302819 | MS.gene46901:CDS |
| AAAGGGCCTAATGCCTAACT+TGG | 0.523198 | 3.1:-86304354 | None:intergenic |
| TGCTTCTTCTCGGCTTTGGT+AGG | 0.531501 | 3.1:-86302633 | None:intergenic |
| ACCACAAGCCCGTATGAAAA+GGG | 0.531757 | 3.1:-86304371 | None:intergenic |
| GTTGGAGCTCCTGCTCGTGT+TGG | 0.532062 | 3.1:+86304078 | MS.gene46901:CDS |
| TAGGCATTGACGAACATATG+AGG | 0.532355 | 3.1:-86304539 | None:intergenic |
| CAATAGCAAACTTCGCTACA+AGG | 0.533756 | 3.1:-86304457 | None:intergenic |
| TGGAAGAAAGAGGTCTGAGA+TGG | 0.537477 | 3.1:-86304153 | None:intergenic |
| GTGCTGAATCAGGGAAATGT+TGG | 0.555601 | 3.1:+86303699 | MS.gene46901:intron |
| TAACGACAAGAAGAGGGATA+AGG | 0.557262 | 3.1:-86302860 | None:intergenic |
| ATTAAGAAAGGAGACAAGGT+TGG | 0.560082 | 3.1:+86304308 | MS.gene46901:CDS |
| CCTGTGGAACTCATTAAGAA+AGG | 0.562398 | 3.1:+86304296 | MS.gene46901:CDS |
| GTTGTTCCTCCAGGCAACAC+AGG | 0.564540 | 3.1:+86304123 | MS.gene46901:CDS |
| CATCCCAACCAAGATTAACA+AGG | 0.566179 | 3.1:+86304253 | MS.gene46901:CDS |
| CTTTCTTAATGAGTTCCACA+GGG | 0.574196 | 3.1:-86304295 | None:intergenic |
| CGTTGTCAGCGTTGACAACA+AGG | 0.575399 | 3.1:-86302704 | None:intergenic |
| ATAACAAACCTGGAAGAAAG+AGG | 0.579894 | 3.1:-86304163 | None:intergenic |
| GGTGACTCCGTTGTTCTCAT+GGG | 0.580224 | 3.1:+86302768 | MS.gene46901:CDS |
| ACGAACAGATCGCTTCATCA+TGG | 0.583200 | 3.1:-86302799 | None:intergenic |
| CCTTAACCTTGTCTGCCTCA+GGG | 0.589860 | 3.1:-86304604 | None:intergenic |
| GGAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 3.1:-86304152 | None:intergenic |
| TTATTTCCCTGAGGCAGACA+AGG | 0.600567 | 3.1:+86304598 | MS.gene46901:CDS |
| GGCAAGTGTTGGGTAAGAGA+TGG | 0.602128 | 3.1:-86304510 | None:intergenic |
| GAAAACTAACGACAAGAAGA+GGG | 0.606607 | 3.1:-86302866 | None:intergenic |
| TTGTTCCTCCAGGCAACACA+GGG | 0.611479 | 3.1:+86304124 | MS.gene46901:CDS |
| CAAGATTAACAAGGGTACTG+TGG | 0.615021 | 3.1:+86304262 | MS.gene46901:CDS |
| TGAAGAAGTTGCTAAATACA+AGG | 0.626443 | 3.1:+86303758 | MS.gene46901:CDS |
| GACGAACATATGAGGAGCAG+CGG | 0.628131 | 3.1:-86304531 | None:intergenic |
| CAGCTACAGAACATTCGTCA+GGG | 0.630095 | 3.1:+86302738 | MS.gene46901:CDS |
| GTTGTCAACGCTGACAACGT+TGG | 0.630374 | 3.1:+86302708 | MS.gene46901:CDS |
| TGGTTCAGTGTTTAGCCCTG+AGG | 0.633517 | 3.1:+86304412 | MS.gene46901:CDS |
| CAATGAAAGTGAAGTGACCA+TGG | 0.657879 | 3.1:-86304486 | None:intergenic |
| CAAGGTTAAGGAGTACCTGA+AGG | 0.661074 | 3.1:+86304616 | MS.gene46901:CDS |
| GTTCTTTCCCATGAGAACAA+CGG | 0.664224 | 3.1:-86302775 | None:intergenic |
| ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 3.1:+86304254 | MS.gene46901:CDS |
| AACATTCGTCAGGGTCTACG+TGG | 0.667957 | 3.1:+86302747 | MS.gene46901:CDS |
| TGTGGAAATTATTACCCCTG+TGG | 0.672323 | 3.1:+86304280 | MS.gene46901:CDS |
| ACTCATTAAGAAAGGAGACA+AGG | 0.674494 | 3.1:+86304304 | MS.gene46901:CDS |
| TCGAGCCCTGTGTTGCCTGG+AGG | 0.687408 | 3.1:-86304129 | None:intergenic |
| CAGTGAGGTCAAGAACCTCA+GGG | 0.701495 | 3.1:-86304427 | None:intergenic |
| TGAGGTTCTTGACCTCACTG+AGG | 0.710337 | 3.1:+86304430 | MS.gene46901:CDS |
| AACCATTGTCATAAACAGAG+AGG | 0.717707 | 3.1:-86304394 | None:intergenic |
| TACCGAATATTATTTCCCTG+AGG | 0.725295 | 3.1:+86304589 | MS.gene46901:CDS |
| TTTCTTAATGAGTTCCACAG+GGG | 0.725748 | 3.1:-86304294 | None:intergenic |
| CTACAAGGTCATCCTCAGTG+AGG | 0.743500 | 3.1:-86304442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCTTATAAATAATACATA+GGG | + | chr3.1:86303236-86303255 | MS.gene46901:intron | 15.0% |
| !! | TAAGCTTATAAATAATACAT+AGG | + | chr3.1:86303235-86303254 | MS.gene46901:intron | 15.0% |
| !! | TATTATTTATAAGCTTATCA+AGG | - | chr3.1:86303232-86303251 | None:intergenic | 15.0% |
| !!! | AGTCTAACTTTATTTATAAT+GGG | + | chr3.1:86303087-86303106 | MS.gene46901:intron | 15.0% |
| !! | TAATTGTCTTAAATCTGAAT+AGG | + | chr3.1:86304056-86304075 | MS.gene46901:intron | 20.0% |
| !! | TATGCAAATAAATAAGCTTA+TGG | - | chr3.1:86303465-86303484 | None:intergenic | 20.0% |
| !!! | CAGTCTAACTTTATTTATAA+TGG | + | chr3.1:86303086-86303105 | MS.gene46901:intron | 20.0% |
| !!! | GTCTAACTTTATTTATAATG+GGG | + | chr3.1:86303088-86303107 | MS.gene46901:intron | 20.0% |
| ! | AATTACTGCACTATATTATG+AGG | + | chr3.1:86303640-86303659 | MS.gene46901:intron | 25.0% |
| ! | ATATGTTATGTTGTTAAGCA+TGG | + | chr3.1:86303805-86303824 | MS.gene46901:intron | 25.0% |
| ! | ATTTACAGAAATTGTAACGA+GGG | - | chr3.1:86303950-86303969 | None:intergenic | 25.0% |
| ! | CTTTATGTTAATTCACAAGT+GGG | + | chr3.1:86303165-86303184 | MS.gene46901:intron | 25.0% |
| ! | TAGTGAGAACTTATGAATTA+AGG | + | chr3.1:86303374-86303393 | MS.gene46901:intron | 25.0% |
| ! | TATTTACAGAAATTGTAACG+AGG | - | chr3.1:86303951-86303970 | None:intergenic | 25.0% |
| ! | TCTTTATGTTAATTCACAAG+TGG | + | chr3.1:86303164-86303183 | MS.gene46901:intron | 25.0% |
| ! | TTAAAAGAAGATAACAAACC+TGG | - | chr3.1:86304176-86304195 | None:intergenic | 25.0% |
| ! | TTATGTTTATTCTCCACTTT+AGG | + | chr3.1:86304223-86304242 | MS.gene46901:intron | 25.0% |
| !! | TTTAGTGATTTTGTGTGATT+TGG | + | chr3.1:86302942-86302961 | MS.gene46901:intron | 25.0% |
| !!! | TTCTGTTTTTTGTTACGTAT+AGG | + | chr3.1:86302978-86302997 | MS.gene46901:intron | 25.0% |
| AAAATAAGCTCAATCCAAAC+GGG | + | chr3.1:86303438-86303457 | MS.gene46901:intron | 30.0% | |
| AATAATACATAGGGTCTGTT+TGG | + | chr3.1:86303245-86303264 | MS.gene46901:intron | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | + | chr3.1:86303437-86303456 | MS.gene46901:intron | 30.0% | |
| TGAAGAAGTTGCTAAATACA+AGG | + | chr3.1:86303758-86303777 | MS.gene46901:CDS | 30.0% | |
| TGTCTTAAATCTGAATAGGT+TGG | + | chr3.1:86304060-86304079 | MS.gene46901:intron | 30.0% | |
| TTCGCTGTTCGATTTAATAA+TGG | + | chr3.1:86302909-86302928 | MS.gene46901:intron | 30.0% | |
| TTTAGCTGTCTATACAAACA+AGG | + | chr3.1:86303569-86303588 | MS.gene46901:intron | 30.0% | |
| ! | AATACTTTTCGTTTGATGCA+TGG | + | chr3.1:86303970-86303989 | MS.gene46901:intron | 30.0% |
| ! | TATTGTTGTTAACTCTTGTG+AGG | + | chr3.1:86303672-86303691 | MS.gene46901:intron | 30.0% |
| !!! | GTTGGTTTGATTTTCACTAA+AGG | + | chr3.1:86303717-86303736 | MS.gene46901:CDS | 30.0% |
| AAAAGCAAGAACGTTCTTGT+AGG | - | chr3.1:86304561-86304580 | None:intergenic | 35.0% | |
| AAATAAGCTCAATCCAAACG+GGG | + | chr3.1:86303439-86303458 | MS.gene46901:intron | 35.0% | |
| AACCATTGTCATAAACAGAG+AGG | - | chr3.1:86304397-86304416 | None:intergenic | 35.0% | |
| ACTCATTAAGAAAGGAGACA+AGG | + | chr3.1:86304304-86304323 | MS.gene46901:CDS | 35.0% | |
| AGAAAACTAACGACAAGAAG+AGG | - | chr3.1:86302870-86302889 | None:intergenic | 35.0% | |
| ATAACAAACCTGGAAGAAAG+AGG | - | chr3.1:86304166-86304185 | None:intergenic | 35.0% | |
| ATCCCAACCAAGATTAACAA+GGG | + | chr3.1:86304254-86304273 | MS.gene46901:CDS | 35.0% | |
| ATTAAGAAAGGAGACAAGGT+TGG | + | chr3.1:86304308-86304327 | MS.gene46901:CDS | 35.0% | |
| CATTCAACAAACAAGACAAG+TGG | - | chr3.1:86304023-86304042 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGTTCCACA+GGG | - | chr3.1:86304298-86304317 | None:intergenic | 35.0% | |
| GAAAACTAACGACAAGAAGA+GGG | - | chr3.1:86302869-86302888 | None:intergenic | 35.0% | |
| TACCCTTGTTAATCTTGGTT+GGG | - | chr3.1:86304259-86304278 | None:intergenic | 35.0% | |
| TACCGAATATTATTTCCCTG+AGG | + | chr3.1:86304589-86304608 | MS.gene46901:CDS | 35.0% | |
| TGCCTCAGGGAAATAATATT+CGG | - | chr3.1:86304594-86304613 | None:intergenic | 35.0% | |
| TTTCACTAAAGGTGACTTGA+AGG | + | chr3.1:86303728-86303747 | MS.gene46901:CDS | 35.0% | |
| TTTCTTAATGAGTTCCACAG+GGG | - | chr3.1:86304297-86304316 | None:intergenic | 35.0% | |
| !! | TTGTAGCGAAGTTTGCTATT+GGG | + | chr3.1:86304459-86304478 | MS.gene46901:CDS | 35.0% |
| CAATAGCAAACTTCGCTACA+AGG | - | chr3.1:86304460-86304479 | None:intergenic | 40.0% | |
| CAATGAAAGTGAAGTGACCA+TGG | - | chr3.1:86304489-86304508 | None:intergenic | 40.0% | |
| CACAGTACCCTTGTTAATCT+TGG | - | chr3.1:86304264-86304283 | None:intergenic | 40.0% | |
| CATCCCAACCAAGATTAACA+AGG | + | chr3.1:86304253-86304272 | MS.gene46901:CDS | 40.0% | |
| CATGGTCACTTCACTTTCAT+TGG | + | chr3.1:86304487-86304506 | MS.gene46901:CDS | 40.0% | |
| CCTGTGGAACTCATTAAGAA+AGG | + | chr3.1:86304296-86304315 | MS.gene46901:CDS | 40.0% | |
| CCTTTCTTAATGAGTTCCAC+AGG | - | chr3.1:86304299-86304318 | None:intergenic | 40.0% | |
| GTACCCTTGTTAATCTTGGT+TGG | - | chr3.1:86304260-86304279 | None:intergenic | 40.0% | |
| GTCCTCTCTGTTTATGACAA+TGG | + | chr3.1:86304392-86304411 | MS.gene46901:CDS | 40.0% | |
| GTTCTTTCCCATGAGAACAA+CGG | - | chr3.1:86302778-86302797 | None:intergenic | 40.0% | |
| TAACGACAAGAAGAGGGATA+AGG | - | chr3.1:86302863-86302882 | None:intergenic | 40.0% | |
| TGAGGATTTGTGCTGAATCA+GGG | + | chr3.1:86303690-86303709 | MS.gene46901:intron | 40.0% | |
| TGTGGAAATTATTACCCCTG+TGG | + | chr3.1:86304280-86304299 | MS.gene46901:CDS | 40.0% | |
| ! | ATAATGGGGCGTGTTTGAAT+TGG | + | chr3.1:86303102-86303121 | MS.gene46901:intron | 40.0% |
| ! | ATCGTAGTTCTGCTTCTTCT+CGG | - | chr3.1:86302646-86302665 | None:intergenic | 40.0% |
| ! | CACTAGAGGTGCAACAAAAA+TGG | - | chr3.1:86303877-86303896 | None:intergenic | 40.0% |
| ! | TTTTTGTTGCACCTCTAGTG+AGG | + | chr3.1:86303877-86303896 | MS.gene46901:intron | 40.0% |
| !! | AGCGTTGACAACAAGGATTT+GGG | - | chr3.1:86302700-86302719 | None:intergenic | 40.0% |
| !! | CAAGATTAACAAGGGTACTG+TGG | + | chr3.1:86304262-86304281 | MS.gene46901:CDS | 40.0% |
| !! | CTTGTAGCGAAGTTTGCTAT+TGG | + | chr3.1:86304458-86304477 | MS.gene46901:CDS | 40.0% |
| !! | GTTGAGAAAAGCATTGTTGC+CGG | - | chr3.1:86302841-86302860 | None:intergenic | 40.0% |
| !! | TAGGCATTGACGAACATATG+AGG | - | chr3.1:86304542-86304561 | None:intergenic | 40.0% |
| !! | TGTAGCGAAGTTTGCTATTG+GGG | + | chr3.1:86304460-86304479 | MS.gene46901:CDS | 40.0% |
| AAAGGGCCTAATGCCTAACT+TGG | - | chr3.1:86304357-86304376 | None:intergenic | 45.0% | |
| AATAAGCTTATGGCCCCGTT+TGG | - | chr3.1:86303455-86303474 | None:intergenic | 45.0% | |
| ACCACAAGCCCGTATGAAAA+GGG | - | chr3.1:86304374-86304393 | None:intergenic | 45.0% | |
| ACGAACAGATCGCTTCATCA+TGG | - | chr3.1:86302802-86302821 | None:intergenic | 45.0% | |
| ATCTCAGACCTCTTTCTTCC+AGG | + | chr3.1:86304155-86304174 | MS.gene46901:CDS | 45.0% | |
| ATTGATGTCGTTGTTCCTCC+AGG | + | chr3.1:86304114-86304133 | MS.gene46901:CDS | 45.0% | |
| CAGCTACAGAACATTCGTCA+GGG | + | chr3.1:86302738-86302757 | MS.gene46901:CDS | 45.0% | |
| GGAGGAACAACGACATCAAT+TGG | - | chr3.1:86304114-86304133 | None:intergenic | 45.0% | |
| GGGTGTATTCATCGATAAGC+TGG | - | chr3.1:86302680-86302699 | None:intergenic | 45.0% | |
| GTGAGGATTTGTGCTGAATC+AGG | + | chr3.1:86303689-86303708 | MS.gene46901:intron | 45.0% | |
| GTGCTGAATCAGGGAAATGT+TGG | + | chr3.1:86303699-86303718 | MS.gene46901:intron | 45.0% | |
| TCAGCTACAGAACATTCGTC+AGG | + | chr3.1:86302737-86302756 | MS.gene46901:CDS | 45.0% | |
| TGCTTGCCAAGTTAGGCATT+AGG | + | chr3.1:86304348-86304367 | MS.gene46901:CDS | 45.0% | |
| TGGAAGAAAGAGGTCTGAGA+TGG | - | chr3.1:86304156-86304175 | None:intergenic | 45.0% | |
| TTATTTCCCTGAGGCAGACA+AGG | + | chr3.1:86304598-86304617 | MS.gene46901:CDS | 45.0% | |
| ! | GCATTAGGCCCTTTTCATAC+GGG | + | chr3.1:86304363-86304382 | MS.gene46901:CDS | 45.0% |
| ! | GGAAGAAAGAGGTCTGAGAT+GGG | - | chr3.1:86304155-86304174 | None:intergenic | 45.0% |
| ! | GGCATTAGGCCCTTTTCATA+CGG | + | chr3.1:86304362-86304381 | MS.gene46901:CDS | 45.0% |
| !! | CAGCGTTGACAACAAGGATT+TGG | - | chr3.1:86302701-86302720 | None:intergenic | 45.0% |
| !! | GTTTGCTATTGGGGTTTCCA+TGG | + | chr3.1:86304469-86304488 | MS.gene46901:CDS | 45.0% |
| !! | AACTTATAAATAATAAATAA+AGG | - | chr3.1:86303306-86303325 | None:intergenic | 5.0% |
| AACATTCGTCAGGGTCTACG+TGG | + | chr3.1:86302747-86302766 | MS.gene46901:CDS | 50.0% | |
| CAACCACAGTACCTCACTAG+AGG | - | chr3.1:86303891-86303910 | None:intergenic | 50.0% | |
| CAGTGAGGTCAAGAACCTCA+GGG | - | chr3.1:86304430-86304449 | None:intergenic | 50.0% | |
| CCTTAACCTTGTCTGCCTCA+GGG | - | chr3.1:86304607-86304626 | None:intergenic | 50.0% | |
| CGTATGCACGCTGAGAAAAC+CGG | + | chr3.1:86302819-86302838 | MS.gene46901:CDS | 50.0% | |
| CTACAAGGTCATCCTCAGTG+AGG | - | chr3.1:86304445-86304464 | None:intergenic | 50.0% | |
| GACCACAAGCCCGTATGAAA+AGG | - | chr3.1:86304375-86304394 | None:intergenic | 50.0% | |
| GACGAACATATGAGGAGCAG+CGG | - | chr3.1:86304534-86304553 | None:intergenic | 50.0% | |
| GCATGGCAATTGCAGCAATG+TGG | + | chr3.1:86303987-86304006 | MS.gene46901:intron | 50.0% | |
| GCTGCATTGCTTGCCAAGTT+AGG | + | chr3.1:86304341-86304360 | MS.gene46901:CDS | 50.0% | |
| GGGATGTTGAGCACCTAAAG+TGG | - | chr3.1:86304239-86304258 | None:intergenic | 50.0% | |
| GGTGACTCCGTTGTTCTCAT+GGG | + | chr3.1:86302768-86302787 | MS.gene46901:CDS | 50.0% | |
| GTTCTGCTTCTTCTCGGCTT+TGG | - | chr3.1:86302640-86302659 | None:intergenic | 50.0% | |
| GTTGTCAACGCTGACAACGT+TGG | + | chr3.1:86302708-86302727 | MS.gene46901:CDS | 50.0% | |
| TCAGTGAGGTCAAGAACCTC+AGG | - | chr3.1:86304431-86304450 | None:intergenic | 50.0% | |
| TCCTTAACCTTGTCTGCCTC+AGG | - | chr3.1:86304608-86304627 | None:intergenic | 50.0% | |
| TGAGGTTCTTGACCTCACTG+AGG | + | chr3.1:86304430-86304449 | MS.gene46901:CDS | 50.0% | |
| TGGTGACTCCGTTGTTCTCA+TGG | + | chr3.1:86302767-86302786 | MS.gene46901:CDS | 50.0% | |
| TGGTTCAGTGTTTAGCCCTG+AGG | + | chr3.1:86304412-86304431 | MS.gene46901:CDS | 50.0% | |
| TTGTTCCTCCAGGCAACACA+GGG | + | chr3.1:86304124-86304143 | MS.gene46901:CDS | 50.0% | |
| ! | TGCTTCTTCTCGGCTTTGGT+AGG | - | chr3.1:86302636-86302655 | None:intergenic | 50.0% |
| !! | CGTTGTCAGCGTTGACAACA+AGG | - | chr3.1:86302707-86302726 | None:intergenic | 50.0% |
| !! | GGCAAGTGTTGGGTAAGAGA+TGG | - | chr3.1:86304513-86304532 | None:intergenic | 50.0% |
| CCCTGAGGCAGACAAGGTTA+AGG | + | chr3.1:86304604-86304623 | MS.gene46901:CDS | 55.0% | |
| CTGCGTACGGGCGTTAGAAT+TGG | - | chr3.1:86303516-86303535 | None:intergenic | 55.0% | |
| GCAACCAAACCAACACGAGC+AGG | - | chr3.1:86304090-86304109 | None:intergenic | 55.0% | |
| GTTGTTCCTCCAGGCAACAC+AGG | + | chr3.1:86304123-86304142 | MS.gene46901:CDS | 55.0% | |
| ! | GCCCTTTTCATACGGGCTTG+TGG | + | chr3.1:86304370-86304389 | MS.gene46901:CDS | 55.0% |
| !! | AGCTCCTGCTCGTGTTGGTT+TGG | + | chr3.1:86304083-86304102 | MS.gene46901:CDS | 55.0% |
| !! | GCACCTCTAGTGAGGTACTG+TGG | + | chr3.1:86303885-86303904 | MS.gene46901:intron | 55.0% |
| AAGCGCGTGCTCACTGCGTA+CGG | - | chr3.1:86303529-86303548 | None:intergenic | 60.0% | |
| GAGGAGCAGCGGCAAGTGTT+GGG | - | chr3.1:86304523-86304542 | None:intergenic | 60.0% | |
| GTTGGAGCTCCTGCTCGTGT+TGG | + | chr3.1:86304078-86304097 | MS.gene46901:CDS | 60.0% | |
| TGAGGAGCAGCGGCAAGTGT+TGG | - | chr3.1:86304524-86304543 | None:intergenic | 60.0% | |
| AGCGCGTGCTCACTGCGTAC+GGG | - | chr3.1:86303528-86303547 | None:intergenic | 65.0% | |
| TCGAGCCCTGTGTTGCCTGG+AGG | - | chr3.1:86304132-86304151 | None:intergenic | 65.0% | |
| GGGTCGAGCCCTGTGTTGCC+TGG | - | chr3.1:86304135-86304154 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86302621 | 86304637 | 86302621 | ID=MS.gene46901 |
| chr3.1 | mRNA | 86302621 | 86304637 | 86302621 | ID=MS.gene46901.t1;Parent=MS.gene46901 |
| chr3.1 | exon | 86302621 | 86302878 | 86302621 | ID=MS.gene46901.t1.exon1;Parent=MS.gene46901.t1 |
| chr3.1 | CDS | 86302621 | 86302878 | 86302621 | ID=cds.MS.gene46901.t1;Parent=MS.gene46901.t1 |
| chr3.1 | exon | 86303711 | 86303779 | 86303711 | ID=MS.gene46901.t1.exon2;Parent=MS.gene46901.t1 |
| chr3.1 | CDS | 86303711 | 86303779 | 86303711 | ID=cds.MS.gene46901.t1;Parent=MS.gene46901.t1 |
| chr3.1 | exon | 86304078 | 86304176 | 86304078 | ID=MS.gene46901.t1.exon3;Parent=MS.gene46901.t1 |
| chr3.1 | CDS | 86304078 | 86304176 | 86304078 | ID=cds.MS.gene46901.t1;Parent=MS.gene46901.t1 |
| chr3.1 | exon | 86304245 | 86304637 | 86304245 | ID=MS.gene46901.t1.exon4;Parent=MS.gene46901.t1 |
| chr3.1 | CDS | 86304245 | 86304637 | 86304245 | ID=cds.MS.gene46901.t1;Parent=MS.gene46901.t1 |
| Gene Sequence |
| Protein sequence |
