AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049361


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049361.t1 MTR_3g094570 99.029 206 2 0 1 206 28 233 2.19e-147 409
MS.gene049361.t1 MTR_3g094860 98.544 206 3 0 1 206 28 233 2.37e-146 406
MS.gene049361.t1 MTR_5g098090 86.893 206 27 0 1 206 29 234 1.39e-127 359
MS.gene049361.t1 MTR_8g091910 82.524 206 21 1 1 206 29 219 1.54e-117 333
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049361.t1 AT1G74050 81.068 206 39 0 1 206 28 233 9.55e-106 304
MS.gene049361.t1 AT1G74060 80.583 206 40 0 1 206 28 233 4.38e-105 302
MS.gene049361.t1 AT1G18540 79.612 206 42 0 1 206 28 233 9.15e-100 288

Find 60 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTGCTGGAAGATTTA+AGG 0.132093 3.1:+75690389 MS.gene049361:CDS
TTTCTCAAACAGCTTCCTTC+TGG 0.232559 3.1:+75690426 MS.gene049361:CDS
GGCTTCTCGGCCGGAGCTGC+AGG 0.250032 3.1:-75689530 None:intergenic
TTAGGTCCATTCAAGATTAA+TGG 0.250233 3.1:+75692079 MS.gene049361:intron
AACCTGAGCTTAGTGGGTTT+TGG 0.276883 3.1:-75689608 None:intergenic
CTTCTTGCTGGAAGATTTAA+GGG 0.311988 3.1:+75690390 MS.gene049361:CDS
TCTGGACTTCTTCTTGTTAC+CGG 0.344596 3.1:+75690444 MS.gene049361:CDS
GGCTTCTTCACGTCGTCGGC+GGG 0.353564 3.1:-75689566 None:intergenic
TGGCTTCACACCTGCCTTCA+AGG 0.355239 3.1:-75692456 None:intergenic
CCCCTTGAGACGTGTGAATC+AGG 0.357560 3.1:+75692105 MS.gene049361:CDS
TGTATCACAAACGTGGTCTC+TGG 0.360563 3.1:+75689453 MS.gene049361:CDS
CGAGTTCTTTGAGGCAGATA+AGG 0.375748 3.1:+75692240 MS.gene049361:CDS
CAAGTCTGGAACACTGTCAA+TGG 0.377541 3.1:-75692408 None:intergenic
ACAGTGTTGATTCTTCTTGC+TGG 0.383364 3.1:+75690378 MS.gene049361:CDS
TTCAGGGCTTCTATTACTCC+AGG 0.405045 3.1:+75690354 MS.gene049361:intron
GTGAATCAGGCTTATGTTAT+CGG 0.407883 3.1:+75692118 MS.gene049361:CDS
AACCGAAGAAATATCTACTT+TGG 0.446745 3.1:-75692149 None:intergenic
TACCAAAGTAGATATTTCTT+CGG 0.451633 3.1:+75692147 MS.gene049361:CDS
AGAAGAATCAACACTGTCCC+TGG 0.473766 3.1:-75690372 None:intergenic
GATCATCTTTCTTCTCCTGA+GGG 0.477455 3.1:-75692355 None:intergenic
AACTTAGGCGGCTTCTCGGC+CGG 0.480002 3.1:-75689539 None:intergenic
CGTCGCTAAGCCTGCAGCTC+CGG 0.482998 3.1:+75689520 MS.gene049361:CDS
GGGACTCCATTAATCTTGAA+TGG 0.491418 3.1:-75692085 None:intergenic
TGATCATCTTTCTTCTCCTG+AGG 0.494574 3.1:-75692356 None:intergenic
TGAAAACTTACCTAGGTGCC+AGG 0.495019 3.1:+75692429 MS.gene049361:CDS
GTAAAACTTAGGCGGCTTCT+CGG 0.498660 3.1:-75689543 None:intergenic
CACATGAGTTGGTCTTCTAA+AGG 0.499867 3.1:+75692477 MS.gene049361:CDS
GGGAGAGAGCGAGTTCTTTG+AGG 0.505471 3.1:+75692231 MS.gene049361:CDS
ACGTGGTCTCTGGGCAATCA+AGG 0.510085 3.1:+75689463 MS.gene049361:CDS
ACCTGCCTTCAAGGAAAACC+TGG 0.516282 3.1:-75692447 None:intergenic
GGTGACGAACCTGAGCTTAG+TGG 0.517641 3.1:-75689615 None:intergenic
TGGCTTCTTCACGTCGTCGG+CGG 0.523746 3.1:-75689567 None:intergenic
CGGAGCTGCAGGCTTAGCGA+CGG 0.526524 3.1:-75689519 None:intergenic
GTATCACAAACGTGGTCTCT+GGG 0.530303 3.1:+75689454 MS.gene049361:CDS
AGCCTGATTCACACGTCTCA+AGG 0.531824 3.1:-75692107 None:intergenic
GATCAAAAGACTGTCGATGC+TGG 0.534143 3.1:+75692374 MS.gene049361:CDS
GGAGCTGCAGGCTTAGCGAC+GGG 0.545817 3.1:-75689518 None:intergenic
GTGACGAACCTGAGCTTAGT+GGG 0.562791 3.1:-75689614 None:intergenic
GCCTGATTCACACGTCTCAA+GGG 0.568583 3.1:-75692106 None:intergenic
CAGGCTTAGCGACGGGATCG+TGG 0.569427 3.1:-75689511 None:intergenic
TGATGACAAGTATTTCTCAA+AGG 0.576844 3.1:+75692186 MS.gene049361:CDS
TAGCGACGGGATCGTGGCGA+GGG 0.582049 3.1:-75689505 None:intergenic
AGCCAAAACCCACTAAGCTC+AGG 0.582122 3.1:+75689606 MS.gene049361:CDS
GAGTGGCTTCTTCACGTCGT+CGG 0.583036 3.1:-75689570 None:intergenic
TCAAGGAAAACCTGGCACCT+AGG 0.589414 3.1:-75692439 None:intergenic
GGCTTGTGCTTGTTGCGGAG+TGG 0.594085 3.1:-75689587 None:intergenic
TTAGCGACGGGATCGTGGCG+AGG 0.595917 3.1:-75689506 None:intergenic
CCAGACTTGAAAACTTACCT+AGG 0.601511 3.1:+75692422 MS.gene049361:CDS
CTTTAGAAGACCAACTCATG+TGG 0.608084 3.1:-75692476 None:intergenic
AGGTGTGAAGCCACATGAGT+TGG 0.608147 3.1:+75692466 MS.gene049361:CDS
GTTCTTTGAGGCAGATAAGG+AGG 0.609313 3.1:+75692243 MS.gene049361:CDS
GTAACAAGAAGAAGTCCAGA+AGG 0.620622 3.1:-75690441 None:intergenic
TCAGGGCTTCTATTACTCCA+GGG 0.623428 3.1:+75690355 MS.gene049361:intron
GCTTCTTCACGTCGTCGGCG+GGG 0.624269 3.1:-75689565 None:intergenic
TCGTCGGCGGGGTAAAACTT+AGG 0.627965 3.1:-75689554 None:intergenic
CCTGATTCACACGTCTCAAG+GGG 0.635856 3.1:-75692105 None:intergenic
TGGGCAATCAAGGCTAAGCA+CGG 0.658739 3.1:+75689473 MS.gene049361:CDS
TCGGCGGGGTAAAACTTAGG+CGG 0.660381 3.1:-75689551 None:intergenic
GCAATCAAGGCTAAGCACGG+TGG 0.725321 3.1:+75689476 MS.gene049361:CDS
TCTGCTATGTATCACAAACG+TGG 0.741302 3.1:+75689446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGTCATATAAAATAATT+TGG + chr3.1:75690550-75690569 MS.gene049361:intron 10.0%
!! TTAATATTTATAATTACAGA+TGG + chr3.1:75689994-75690013 MS.gene049361:intron 10.0%
!! AAAAAATCAATGATTTAACT+TGG + chr3.1:75691657-75691676 MS.gene049361:intron 15.0%
!! ACAATTGTATATCTAATTAA+TGG - chr3.1:75689916-75689935 None:intergenic 15.0%
!! ATGTAAAGACTAAAAATATA+AGG + chr3.1:75690922-75690941 MS.gene049361:intron 15.0%
!! ATTAAAATTAAGAATCAAGT+TGG - chr3.1:75691460-75691479 None:intergenic 15.0%
!! ATTGATATGTTAAGATTAAA+AGG + chr3.1:75691168-75691187 MS.gene049361:intron 15.0%
!! CTCAAAATTAGAATAAAAAA+GGG - chr3.1:75690195-75690214 None:intergenic 15.0%
!! TATTTATTTATAGTTTCAAG+TGG - chr3.1:75691134-75691153 None:intergenic 15.0%
!! TCTCAAAATTAGAATAAAAA+AGG - chr3.1:75690196-75690215 None:intergenic 15.0%
!! TGTATTTGGTAAATATTATT+TGG + chr3.1:75690633-75690652 MS.gene049361:intron 15.0%
!! TTAAAATTAAGAATCAAGTT+GGG - chr3.1:75691459-75691478 None:intergenic 15.0%
!! TTTCTTAAAACAATAATTAC+CGG - chr3.1:75690466-75690485 None:intergenic 15.0%
!!! AAATAGAAAATCTAGAATTA+TGG - chr3.1:75690992-75691011 None:intergenic 15.0%
!!! AAATTTTATATGATATCTTC+AGG + chr3.1:75689730-75689749 MS.gene049361:intron 15.0%
!!! AATTTTTAGAAATATTAGGA+TGG - chr3.1:75691387-75691406 None:intergenic 15.0%
!!! ACTAATTTTTTAATTCTTTG+GGG + chr3.1:75691087-75691106 MS.gene049361:intron 15.0%
!!! ATAATTCTAGATTTTCTATT+TGG + chr3.1:75690991-75691010 MS.gene049361:intron 15.0%
!!! ATATACATTTTTTGTTTAGT+AGG + chr3.1:75691322-75691341 MS.gene049361:intron 15.0%
!!! ATATTTGTTTGTTGTATTAT+GGG + chr3.1:75690526-75690545 MS.gene049361:intron 15.0%
!!! CATGAATTTTTAGAAATATT+AGG - chr3.1:75691391-75691410 None:intergenic 15.0%
!!! GACTAATTTTTTAATTCTTT+GGG + chr3.1:75691086-75691105 MS.gene049361:intron 15.0%
!!! TATATTTGTTTGTTGTATTA+TGG + chr3.1:75690525-75690544 MS.gene049361:intron 15.0%
!! AAAGATATTATTAAGCGTAT+TGG - chr3.1:75691890-75691909 None:intergenic 20.0%
!! AATATAAGGTAGTACATTTA+TGG + chr3.1:75690936-75690955 MS.gene049361:intron 20.0%
!! AATATAGAAACTGTTGATAT+TGG + chr3.1:75690121-75690140 MS.gene049361:intron 20.0%
!! ATAAATCATTCAATTTGACA+AGG - chr3.1:75690316-75690335 None:intergenic 20.0%
!! GTCAAATTGAATGATTTATT+TGG + chr3.1:75690317-75690336 MS.gene049361:intron 20.0%
!! TAATCTTAACATATCAATCA+AGG - chr3.1:75691166-75691185 None:intergenic 20.0%
!! TATGCTCTATTTATTTCAAT+GGG + chr3.1:75691786-75691805 MS.gene049361:intron 20.0%
!! TTATGCTCTATTTATTTCAA+TGG + chr3.1:75691785-75691804 MS.gene049361:intron 20.0%
!!! ATAATTCTAGTTGTTTTATC+TGG + chr3.1:75691950-75691969 MS.gene049361:intron 20.0%
!!! ATTTCTAAAAATTCATGTAG+AGG + chr3.1:75691394-75691413 MS.gene049361:intron 20.0%
!!! GGACTAATTTTTTAATTCTT+TGG + chr3.1:75691085-75691104 MS.gene049361:intron 20.0%
!!! TAAAATTAAGAATCAAGTTG+GGG - chr3.1:75691458-75691477 None:intergenic 20.0%
!!! TAAACCTACTTTTTTTATCT+GGG + chr3.1:75691715-75691734 MS.gene049361:intron 20.0%
!!! TAATTCTAGTTGTTTTATCT+GGG + chr3.1:75691951-75691970 MS.gene049361:intron 20.0%
!!! TGCTTATTTAAAGTTTGTTT+TGG + chr3.1:75690607-75690626 MS.gene049361:intron 20.0%
!!! TTAATAATATCTTTTGCTCA+TGG + chr3.1:75691896-75691915 MS.gene049361:intron 20.0%
!!! TTGTTATACTACGTTTATTT+TGG + chr3.1:75690224-75690243 MS.gene049361:intron 20.0%
!!! TTTTAATTGCACTGTTTATT+AGG + chr3.1:75691473-75691492 MS.gene049361:intron 20.0%
! AATAAATAGAGCATAACCTA+TGG - chr3.1:75691781-75691800 None:intergenic 25.0%
! ATTATGGTCTGCAATATAAA+AGG - chr3.1:75690976-75690995 None:intergenic 25.0%
! CAACAAAGAAAACGATAATT+GGG + chr3.1:75691064-75691083 MS.gene049361:intron 25.0%
! CAGTTATATACATAAAATGC+TGG - chr3.1:75690503-75690522 None:intergenic 25.0%
! CTCAAAATTGCAACAAAAAA+AGG - chr3.1:75689663-75689682 None:intergenic 25.0%
! GAAAGATATTAGTATTACCA+TGG - chr3.1:75691363-75691382 None:intergenic 25.0%
! GTAAATTAAGACTAGAGATT+AGG + chr3.1:75691232-75691251 MS.gene049361:intron 25.0%
! GTGGATCAATATGTAATTAA+AGG - chr3.1:75691115-75691134 None:intergenic 25.0%
! TAAAAGCTATGTAAAGAAGT+TGG + chr3.1:75690836-75690855 MS.gene049361:intron 25.0%
! TACCAAAGTAGATATTTCTT+CGG + chr3.1:75692147-75692166 MS.gene049361:CDS 25.0%
! TATTTATAATTACAGATGGC+TGG + chr3.1:75689998-75690017 MS.gene049361:intron 25.0%
! TTATCAGTAGAAATGAACAA+TGG - chr3.1:75689639-75689658 None:intergenic 25.0%
! TTTATATGATATCTTCAGGT+TGG + chr3.1:75689734-75689753 MS.gene049361:intron 25.0%
! TTTCCATTGAAAATTACATG+AGG + chr3.1:75690722-75690741 MS.gene049361:intron 25.0%
!! ACAGTTTAGTTGTAAAGTTT+TGG - chr3.1:75690054-75690073 None:intergenic 25.0%
!! TATACATTTTCATCACACTA+TGG - chr3.1:75691625-75691644 None:intergenic 25.0%
!!! AAGATGTGGTGTTTTTTTAA+TGG + chr3.1:75689869-75689888 MS.gene049361:intron 25.0%
!!! CTAAACCTACTTTTTTTATC+TGG + chr3.1:75691714-75691733 MS.gene049361:intron 25.0%
!!! GTTTGTTTTGGATTTGTATT+TGG + chr3.1:75690619-75690638 MS.gene049361:intron 25.0%
!!! TAGTTGTAAAGTTTTGGAAA+TGG - chr3.1:75690048-75690067 None:intergenic 25.0%
!!! TGTTTGTTGAGTTGATATTT+TGG + chr3.1:75692268-75692287 MS.gene049361:intron 25.0%
!!! TTACAATGCTTTTGCTTTTT+AGG + chr3.1:75692319-75692338 MS.gene049361:intron 25.0%
!!! TTGTTTTGTCTGTTAAAACT+GGG + chr3.1:75689803-75689822 MS.gene049361:intron 25.0%
!!! TTTTGCTTTTTAGGACAAAA+AGG + chr3.1:75692328-75692347 MS.gene049361:intron 25.0%
AACAGGTCAAACAATAACTA+AGG - chr3.1:75690891-75690910 None:intergenic 30.0%
AACCGAAGAAATATCTACTT+TGG - chr3.1:75692152-75692171 None:intergenic 30.0%
AACTCTTAGTGGTTACTTAT+AGG - chr3.1:75690769-75690788 None:intergenic 30.0%
AATCACAATAACTCCACAAA+GGG - chr3.1:75689777-75689796 None:intergenic 30.0%
ACATCCCAGATAAAAAAAGT+AGG - chr3.1:75691722-75691741 None:intergenic 30.0%
AGACATGACAATATCGAATT+TGG + chr3.1:75691554-75691573 MS.gene049361:intron 30.0%
AGTATGTTCAAATCTAGAGA+CGG - chr3.1:75691507-75691526 None:intergenic 30.0%
ATGACAATATCGAATTTGGT+TGG + chr3.1:75691558-75691577 MS.gene049361:intron 30.0%
ATTAATCTTGAATGGACCTA+AGG - chr3.1:75692080-75692099 None:intergenic 30.0%
CAATTGTACAATTGTATCCA+AGG + chr3.1:75689929-75689948 MS.gene049361:intron 30.0%
CCAACAAAGAAAACGATAAT+TGG + chr3.1:75691063-75691082 MS.gene049361:intron 30.0%
CTAAACATTTCAACTCTTAG+TGG - chr3.1:75690780-75690799 None:intergenic 30.0%
GGGATGTGTTTAAATATACT+AGG + chr3.1:75691735-75691754 MS.gene049361:intron 30.0%
TAACAGATCCAAAATAAACG+TGG - chr3.1:75689692-75689711 None:intergenic 30.0%
TAGAAACTGTTGATATTGGT+AGG + chr3.1:75690125-75690144 MS.gene049361:intron 30.0%
TATAACTTTACCAACTTCCA+TGG + chr3.1:75691205-75691224 MS.gene049361:intron 30.0%
TCAATAGAATTGAAAAACGC+TGG - chr3.1:75690168-75690187 None:intergenic 30.0%
TGAATGATTTATTTGGTACC+TGG + chr3.1:75690324-75690343 MS.gene049361:intron 30.0%
TGATGACAAGTATTTCTCAA+AGG + chr3.1:75692186-75692205 MS.gene049361:CDS 30.0%
TGATGACTGAGTTAATATAG+TGG + chr3.1:75689966-75689985 MS.gene049361:intron 30.0%
TTACATAGCGTTACAAAAAC+AGG - chr3.1:75690908-75690927 None:intergenic 30.0%
TTAGGTCCATTCAAGATTAA+TGG + chr3.1:75692079-75692098 MS.gene049361:intron 30.0%
TTAGTGGTTACTTATAGGAA+AGG - chr3.1:75690764-75690783 None:intergenic 30.0%
! ACACCTCATGTAATTTTCAA+TGG - chr3.1:75690728-75690747 None:intergenic 30.0%
! CCAATTATCGTTTTCTTTGT+TGG - chr3.1:75691066-75691085 None:intergenic 30.0%
! CTATTTGGTTTCTTGTACTT+TGG + chr3.1:75691006-75691025 MS.gene049361:intron 30.0%
!!! AGGTTGGTTTTTTTCAAAAC+AGG - chr3.1:75690871-75690890 None:intergenic 30.0%
!!! CTTGTTTTGTCTGTTAAAAC+TGG + chr3.1:75689802-75689821 MS.gene049361:intron 30.0%
ACCTAGTTATACATCTCCAT+AGG + chr3.1:75691762-75691781 MS.gene049361:intron 35.0%
ACCTATGGAGATGTATAACT+AGG - chr3.1:75691766-75691785 None:intergenic 35.0%
AGTCTTAATTTACACCTCCA+TGG - chr3.1:75691225-75691244 None:intergenic 35.0%
ATATTAGTTGCTACCAATGC+TGG - chr3.1:75690106-75690125 None:intergenic 35.0%
ATCACAATAACTCCACAAAG+GGG - chr3.1:75689776-75689795 None:intergenic 35.0%
ATTCATCACACTAAGGTAAG+AGG - chr3.1:75691586-75691605 None:intergenic 35.0%
CAACTCAATTCATCACACTA+AGG - chr3.1:75691593-75691612 None:intergenic 35.0%
CCTATTAATATGCTTGTCAC+AGG + chr3.1:75691278-75691297 MS.gene049361:intron 35.0%
CCTGTGACAAGCATATTAAT+AGG - chr3.1:75691281-75691300 None:intergenic 35.0%
CGATGGTCTATTAGTGAAAT+AGG + chr3.1:75691527-75691546 MS.gene049361:intron 35.0%
CTAGATTTGAACATACTCGA+TGG + chr3.1:75691510-75691529 MS.gene049361:intron 35.0%
CTTCTTGCTGGAAGATTTAA+GGG + chr3.1:75690390-75690409 MS.gene049361:CDS 35.0%
GAAATTTAATTCCCCCTTTG+TGG + chr3.1:75689761-75689780 MS.gene049361:intron 35.0%
GAAGATTTGTCAAAGATGAG+TGG - chr3.1:75692039-75692058 None:intergenic 35.0%
GAATCACAATAACTCCACAA+AGG - chr3.1:75689778-75689797 None:intergenic 35.0%
GCAATCAGTCAATAAACAAG+AGG - chr3.1:75690294-75690313 None:intergenic 35.0%
GCTGATGTTTGATTAAGATG+TGG + chr3.1:75689855-75689874 MS.gene049361:intron 35.0%
GGTCAAACAATAACTAAGGT+TGG - chr3.1:75690887-75690906 None:intergenic 35.0%
GGTCAGAGTAAAAAATTCCA+TGG + chr3.1:75691343-75691362 MS.gene049361:intron 35.0%
GTGAATCAGGCTTATGTTAT+CGG + chr3.1:75692118-75692137 MS.gene049361:CDS 35.0%
GTTAACTCAATCATCATCTG+TGG - chr3.1:75691829-75691848 None:intergenic 35.0%
TCTTCTTGCTGGAAGATTTA+AGG + chr3.1:75690389-75690408 MS.gene049361:CDS 35.0%
TGAAAATTACATGAGGTGTG+TGG + chr3.1:75690729-75690748 MS.gene049361:intron 35.0%
TGGAGATGTATAACTAGGTT+TGG - chr3.1:75691761-75691780 None:intergenic 35.0%
TTGTTCACTCTCATTACCTT+AGG + chr3.1:75692061-75692080 MS.gene049361:intron 35.0%
! AGTAACTGCCACGTTTATTT+TGG + chr3.1:75689681-75689700 MS.gene049361:intron 35.0%
! TTCAAATCTAGAGACGGATT+AGG - chr3.1:75691501-75691520 None:intergenic 35.0%
! TTTTGTCTGTTAAAACTGGG+TGG + chr3.1:75689806-75689825 MS.gene049361:intron 35.0%
!! TCAAATCTAGAGACGGATTA+GGG - chr3.1:75691500-75691519 None:intergenic 35.0%
AACTTTACCAACTTCCATGG+AGG + chr3.1:75691208-75691227 MS.gene049361:intron 40.0%
ATCCCAGAAAAAGACGAAGA+AGG + chr3.1:75692210-75692229 MS.gene049361:CDS 40.0%
ATGCAAGTGACCATAGACAA+TGG - chr3.1:75691925-75691944 None:intergenic 40.0%
ATTTACACCTCCATGGAAGT+TGG - chr3.1:75691218-75691237 None:intergenic 40.0%
CCAGACTTGAAAACTTACCT+AGG + chr3.1:75692422-75692441 MS.gene049361:CDS 40.0%
CTCATGGTTTCCATTGTCTA+TGG + chr3.1:75691912-75691931 MS.gene049361:intron 40.0%
GATCATCTTTCTTCTCCTGA+GGG - chr3.1:75692358-75692377 None:intergenic 40.0%
GATTTGTCAAAGATGAGTGG+AGG - chr3.1:75692036-75692055 None:intergenic 40.0%
GCTATGTAAAGAAGTTGGAC+AGG + chr3.1:75690841-75690860 MS.gene049361:intron 40.0%
GGGACTCCATTAATCTTGAA+TGG - chr3.1:75692088-75692107 None:intergenic 40.0%
GGTAGTACATTTATGGATGC+AGG + chr3.1:75690943-75690962 MS.gene049361:intron 40.0%
GTAACAAGAAGAAGTCCAGA+AGG - chr3.1:75690444-75690463 None:intergenic 40.0%
TATTGGTAGGAACTAAGCTC+AGG + chr3.1:75690138-75690157 MS.gene049361:intron 40.0%
TCACAATAACTCCACAAAGG+GGG - chr3.1:75689775-75689794 None:intergenic 40.0%
TCCCAGAAAAAGACGAAGAA+GGG + chr3.1:75692211-75692230 MS.gene049361:CDS 40.0%
TCTGGACTTCTTCTTGTTAC+CGG + chr3.1:75690444-75690463 MS.gene049361:CDS 40.0%
TGATCATCTTTCTTCTCCTG+AGG - chr3.1:75692359-75692378 None:intergenic 40.0%
TGTCCGAACTTGAACTTTAC+TGG + chr3.1:75691255-75691274 MS.gene049361:intron 40.0%
TTTCCATTGTGTATGTCCAC+TGG + chr3.1:75691687-75691706 MS.gene049361:intron 40.0%
TTTCTCAAACAGCTTCCTTC+TGG + chr3.1:75690426-75690445 MS.gene049361:CDS 40.0%
TTTCTTCCTGCATTAGTGCT+GGG + chr3.1:75689833-75689852 MS.gene049361:intron 40.0%
! AGGCCAGTAAAGTTCAAGTT+CGG - chr3.1:75691261-75691280 None:intergenic 40.0%
! TCCCTTCTTCGTCTTTTTCT+GGG - chr3.1:75692215-75692234 None:intergenic 40.0%
!! ACAGTGTTGATTCTTCTTGC+TGG + chr3.1:75690378-75690397 MS.gene049361:CDS 40.0%
!! GGTACCTGGATTTGTTTTCA+GGG + chr3.1:75690338-75690357 MS.gene049361:intron 40.0%
!! TGAAGAAAGAGTACCAGCAT+TGG + chr3.1:75690090-75690109 MS.gene049361:intron 40.0%
!! TGGTACCTGGATTTGTTTTC+AGG + chr3.1:75690337-75690356 MS.gene049361:intron 40.0%
!!! CCTAGGTAAGTTTTCAAGTC+TGG - chr3.1:75692425-75692444 None:intergenic 40.0%
AAGTAGGTTTAGCATGCCAG+TGG - chr3.1:75691706-75691725 None:intergenic 45.0%
AGAAGAATCAACACTGTCCC+TGG - chr3.1:75690375-75690394 None:intergenic 45.0%
AGGTGAGCAGAGTTATGTGT+TGG + chr3.1:75691414-75691433 MS.gene049361:intron 45.0%
ATGCCAGTGGACATACACAA+TGG - chr3.1:75691693-75691712 None:intergenic 45.0%
GAAGCCCTGAAAACAAATCC+AGG - chr3.1:75690345-75690364 None:intergenic 45.0%
GATCAAAAGACTGTCGATGC+TGG + chr3.1:75692374-75692393 MS.gene049361:CDS 45.0%
GGTGAGCAGAGTTATGTGTT+GGG + chr3.1:75691415-75691434 MS.gene049361:intron 45.0%
GTAAAACTTAGGCGGCTTCT+CGG - chr3.1:75689546-75689565 None:intergenic 45.0%
GTATCACAAACGTGGTCTCT+GGG + chr3.1:75689454-75689473 MS.gene049361:CDS 45.0%
GTCTGTTAAAACTGGGTGGT+GGG + chr3.1:75689810-75689829 MS.gene049361:intron 45.0%
GTGAGCAGAGTTATGTGTTG+GGG + chr3.1:75691416-75691435 MS.gene049361:intron 45.0%
GTTTCTTCCTGCATTAGTGC+TGG + chr3.1:75689832-75689851 MS.gene049361:intron 45.0%
TCAGGGCTTCTATTACTCCA+GGG + chr3.1:75690355-75690374 MS.gene049361:intron 45.0%
TGAAAACTTACCTAGGTGCC+AGG + chr3.1:75692429-75692448 MS.gene049361:CDS 45.0%
TGAGCAGAGTTATGTGTTGG+GGG + chr3.1:75691417-75691436 MS.gene049361:intron 45.0%
TGTATCACAAACGTGGTCTC+TGG + chr3.1:75689453-75689472 MS.gene049361:CDS 45.0%
TGTCTGTTAAAACTGGGTGG+TGG + chr3.1:75689809-75689828 MS.gene049361:intron 45.0%
TTCAGGGCTTCTATTACTCC+AGG + chr3.1:75690354-75690373 MS.gene049361:intron 45.0%
! CAAGTCTGGAACACTGTCAA+TGG - chr3.1:75692411-75692430 None:intergenic 45.0%
! CTCCCTTCTTCGTCTTTTTC+TGG - chr3.1:75692216-75692235 None:intergenic 45.0%
!! CGAGTTCTTTGAGGCAGATA+AGG + chr3.1:75692240-75692259 MS.gene049361:CDS 45.0%
!! GTTCTTTGAGGCAGATAAGG+AGG + chr3.1:75692243-75692262 MS.gene049361:CDS 45.0%
!!! AACCTGAGCTTAGTGGGTTT+TGG - chr3.1:75689611-75689630 None:intergenic 45.0%
!!! GTTTTGGCTTGTGCTTGTTG+CGG - chr3.1:75689595-75689614 None:intergenic 45.0%
ACCTGCCTTCAAGGAAAACC+TGG - chr3.1:75692450-75692469 None:intergenic 50.0%
AGCCAAAACCCACTAAGCTC+AGG + chr3.1:75689606-75689625 MS.gene049361:CDS 50.0%
AGCCTGATTCACACGTCTCA+AGG - chr3.1:75692110-75692129 None:intergenic 50.0%
AGGTGTGAAGCCACATGAGT+TGG + chr3.1:75692466-75692485 MS.gene049361:CDS 50.0%
CCTGATTCACACGTCTCAAG+GGG - chr3.1:75692108-75692127 None:intergenic 50.0%
GCCTGATTCACACGTCTCAA+GGG - chr3.1:75692109-75692128 None:intergenic 50.0%
GTGACGAACCTGAGCTTAGT+GGG - chr3.1:75689617-75689636 None:intergenic 50.0%
TCAACAAGCTGAACGAGCCT+TGG - chr3.1:75689949-75689968 None:intergenic 50.0%
TCAAGGAAAACCTGGCACCT+AGG - chr3.1:75692442-75692461 None:intergenic 50.0%
TGGGCAATCAAGGCTAAGCA+CGG + chr3.1:75689473-75689492 MS.gene049361:CDS 50.0%
! AGGTGCCAGGTTTTCCTTGA+AGG + chr3.1:75692442-75692461 MS.gene049361:CDS 50.0%
ACGTGGTCTCTGGGCAATCA+AGG + chr3.1:75689463-75689482 MS.gene049361:CDS 55.0%
CATCAGCCCAGCACTAATGC+AGG - chr3.1:75689842-75689861 None:intergenic 55.0%
CCCCTTGAGACGTGTGAATC+AGG + chr3.1:75692105-75692124 MS.gene049361:CDS 55.0%
GAGTGGCTTCTTCACGTCGT+CGG - chr3.1:75689573-75689592 None:intergenic 55.0%
GCAATCAAGGCTAAGCACGG+TGG + chr3.1:75689476-75689495 MS.gene049361:CDS 55.0%
GGGAGAGAGCGAGTTCTTTG+AGG + chr3.1:75692231-75692250 MS.gene049361:CDS 55.0%
GGTGACGAACCTGAGCTTAG+TGG - chr3.1:75689618-75689637 None:intergenic 55.0%
TCGGCGGGGTAAAACTTAGG+CGG - chr3.1:75689554-75689573 None:intergenic 55.0%
TCGTCGGCGGGGTAAAACTT+AGG - chr3.1:75689557-75689576 None:intergenic 55.0%
TGGCTTCACACCTGCCTTCA+AGG - chr3.1:75692459-75692478 None:intergenic 55.0%
! GCCAGGTTTTCCTTGAAGGC+AGG + chr3.1:75692446-75692465 MS.gene049361:CDS 55.0%
!! GGACAAAAAGGTGCTCCCTC+AGG + chr3.1:75692340-75692359 MS.gene049361:intron 55.0%
AACTTAGGCGGCTTCTCGGC+CGG - chr3.1:75689542-75689561 None:intergenic 60.0%
TGGCTTCTTCACGTCGTCGG+CGG - chr3.1:75689570-75689589 None:intergenic 60.0%
! GGCTTGTGCTTGTTGCGGAG+TGG - chr3.1:75689590-75689609 None:intergenic 60.0%
CAGGCTTAGCGACGGGATCG+TGG - chr3.1:75689514-75689533 None:intergenic 65.0%
CGGAGCTGCAGGCTTAGCGA+CGG - chr3.1:75689522-75689541 None:intergenic 65.0%
CGTCGCTAAGCCTGCAGCTC+CGG + chr3.1:75689520-75689539 MS.gene049361:CDS 65.0%
GCTTCTTCACGTCGTCGGCG+GGG - chr3.1:75689568-75689587 None:intergenic 65.0%
GGAGCTGCAGGCTTAGCGAC+GGG - chr3.1:75689521-75689540 None:intergenic 65.0%
GGCTTCTTCACGTCGTCGGC+GGG - chr3.1:75689569-75689588 None:intergenic 65.0%
TAGCGACGGGATCGTGGCGA+GGG - chr3.1:75689508-75689527 None:intergenic 65.0%
TTAGCGACGGGATCGTGGCG+AGG - chr3.1:75689509-75689528 None:intergenic 65.0%
GGCTTCTCGGCCGGAGCTGC+AGG - chr3.1:75689533-75689552 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 75689452 75692496 75689452 ID=MS.gene049361
chr3.1 mRNA 75689452 75692496 75689452 ID=MS.gene049361.t1;Parent=MS.gene049361
chr3.1 exon 75689452 75689627 75689452 ID=MS.gene049361.t1.exon1;Parent=MS.gene049361.t1
chr3.1 CDS 75689452 75689627 75689452 ID=cds.MS.gene049361.t1;Parent=MS.gene049361.t1
chr3.1 exon 75690359 75690465 75690359 ID=MS.gene049361.t1.exon2;Parent=MS.gene049361.t1
chr3.1 CDS 75690359 75690465 75690359 ID=cds.MS.gene049361.t1;Parent=MS.gene049361.t1
chr3.1 exon 75692083 75692264 75692083 ID=MS.gene049361.t1.exon3;Parent=MS.gene049361.t1
chr3.1 CDS 75692083 75692264 75692083 ID=cds.MS.gene049361.t1;Parent=MS.gene049361.t1
chr3.1 exon 75692341 75692496 75692341 ID=MS.gene049361.t1.exon4;Parent=MS.gene049361.t1
chr3.1 CDS 75692341 75692496 75692341 ID=cds.MS.gene049361.t1;Parent=MS.gene049361.t1
Gene Sequence

>MS.gene049361

ATGTATCACAAACGTGGTCTCTGGGCAATCAAGGCTAAGCACGGTGGAGCTTTCCCTCGCCACGATCCCGTCGCTAAGCCTGCAGCTCCGGCCGAGAAGCCGCCTAAGTTTTACCCCGCCGACGACGTGAAGAAGCCACTCCGCAACAAGCACAAGCCAAAACCCACTAAGCTCAGGTTCGTCACCATTGTTCATTTCTACTGATAAACCTTTTTTTGTTGCAATTTTGAGTAACTGCCACGTTTATTTTGGATCTGTTAAATGTTGATATTTGTCGAAAATTTTATATGATATCTTCAGGTTGGTCTAGAAATTTAATTCCCCCTTTGTGGAGTTATTGTGATTCATAACTTGTTTTGTCTGTTAAAACTGGGTGGTGGGTTTCTTCCTGCATTAGTGCTGGGCTGATGTTTGATTAAGATGTGGTGTTTTTTTAATGGTTAACAAATGATAATATCTGTCCATTAATTAGATATACAATTGTACAATTGTATCCAAGGCTCGTTCAGCTTGTTGATGACTGAGTTAATATAGTGGTGAGATTAATATTTATAATTACAGATGGCTGGTACTTAACTCTTGCAACATAATTTCCATTTCCAAAACTTTACAACTAAACTGTGTACGTATTAATGAACTGAAGAAAGAGTACCAGCATTGGTAGCAACTAATATAGAAACTGTTGATATTGGTAGGAACTAAGCTCAGGTTCGCCAGCGTTTTTCAATTCTATTGATAAACCCTTTTTTATTCTAATTTTGAGAAACTGTTGTTGTTATACTACGTTTATTTTGGATCTGATAAATGTTGTATATGATAAATTACGAACTTTGTTATTGCCTCTTGTTTATTGACTGATTGCCTTGTCAAATTGAATGATTTATTTGGTACCTGGATTTGTTTTCAGGGCTTCTATTACTCCAGGGACAGTGTTGATTCTTCTTGCTGGAAGATTTAAGGGAAAGAGAGTTGTGTTTCTCAAACAGCTTCCTTCTGGACTTCTTCTTGTTACCGGTAATTATTGTTTTAAGAAATTAACATTGTTTGTCCAGCATTTTATGTATATAACTGTATATATTTGTTTGTTGTATTATGGGTTATTGTCATATAAAATAATTTGGTGTATTTGACAAAGAACTTCTGCTTAGTACGAATTGCTTATTTAAAGTTTGTTTTGGATTTGTATTTGGTAAATATTATTTGGTGTTTGAATGCACTTTAGACACAACTTGATTCATGTCATATAGCTTATGCTCATTTTACTTTTTGCTTTCCATTGAAAATTACATGAGGTGTGTGGCGTGTTCTTCCTTTCCTATAAGTAACCACTAAGAGTTGAAATGTTTAGAGTGAGTCTAAATATAAAATAAAATAAAAAATGAACTAAAAGCTATGTAAAGAAGTTGGACAGGATCTCCTGTTTTGAAAAAAACCAACCTTAGTTATTGTTTGACCTGTTTTTGTAACGCTATGTAAAGACTAAAAATATAAGGTAGTACATTTATGGATGCAGGCTCTTATCCTTTTATATTGCAGACCATAATTCTAGATTTTCTATTTGGTTTCTTGTACTTTGGATCTTTGTCTAAAAGAATGACAACAGAATAGAAGCCAACAAAGAAAACGATAATTGGGACTAATTTTTTAATTCTTTGGGGCTCCTTTAATTACATATTGATCCACTTGAAACTATAAATAAATAAACTCTACACCTTGATTGATATGTTAAGATTAAAAGGCAGCAGTAACATTATATAACTTTACCAACTTCCATGGAGGTGTAAATTAAGACTAGAGATTAGGTGTCCGAACTTGAACTTTACTGGCCTATTAATATGCTTGTCACAGGTTGTTGACTATATTTAAAGAAATATACATTTTTTGTTTAGTAGGTCAGAGTAAAAAATTCCATGGTAATACTAATATCTTTCACCATCCTAATATTTCTAAAAATTCATGTAGAGGTGAGCAGAGTTATGTGTTGGGGGACATGTTATATTTATCCCCAACTTGATTCTTAATTTTAATTGCACTGTTTATTAGGTCCCTAATCCGTCTCTAGATTTGAACATACTCGATGGTCTATTAGTGAAATAGGTCTAAGACATGACAATATCGAATTTGGTTGGATCCTCTTACCTTAGTGTGATGAATTGAGTTGTTTTGACTACCATAGTGTGATGAAAATGTATATTTTTGTTGAAAAAAAAATCAATGATTTAACTTGGTCATTGCTTTCCATTGTGTATGTCCACTGGCATGCTAAACCTACTTTTTTTATCTGGGATGTGTTTAAATATACTAGGCCAAACCTAGTTATACATCTCCATAGGTTATGCTCTATTTATTTCAATGGGTTAAACTTAATTATTCTCCACAGATGATGATTGAGTTAACTCGTTTGCTTTAGTGTACGTTCTGTTCTTTCTTTTTTACCAATACGCTTAATAATATCTTTTGCTCATGGTTTCCATTGTCTATGGTCACTTGCATGCTAAATAATTCTAGTTGTTTTATCTGGGTTGTGTTTTCAAAATACTCTTGCATTTGCTTTTGATACATTTTATAAGATCTACTTTCGCCTCCACTCATCTTTGACAAATCTTCATTTGTTCACTCTCATTACCTTAGGTCCATTCAAGATTAATGGAGTCCCCTTGAGACGTGTGAATCAGGCTTATGTTATCGGTACATCTACCAAAGTAGATATTTCTTCGGTTAATGTTGACAAGTTTGATGACAAGTATTTCTCAAAGGAATCCCAGAAAAAGACGAAGAAGGGAGAGAGCGAGTTCTTTGAGGCAGATAAGGAGGTATGTTTGTTGAGTTGATATTTTGGTAATTATTCTGCTTGTGTTTGCTGATCTTTACAATGCTTTTGCTTTTTAGGACAAAAAGGTGCTCCCTCAGGAGAAGAAAGATGATCAAAAGACTGTCGATGCTGGTTTGTTAAAAGCCATTGACAGTGTTCCAGACTTGAAAACTTACCTAGGTGCCAGGTTTTCCTTGAAGGCAGGTGTGAAGCCACATGAGTTGGTCTTCTAA

Protein sequence

>MS.gene049361.t1

MYHKRGLWAIKAKHGGAFPRHDPVAKPAAPAEKPPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF