Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47348.t1 | XP_013468064.1 | 91.5 | 459 | 37 | 1 | 64 | 520 | 1 | 459 | 5.70E-237 | 830.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47348.t1 | Q8GYY1 | 58.6 | 256 | 102 | 2 | 90 | 341 | 35 | 290 | 1.1e-74 | 282.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47348.t1 | A0A072VKE1 | 91.5 | 459 | 37 | 1 | 64 | 520 | 1 | 459 | 4.1e-237 | 830.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene47348.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054412 | MS.gene47348 | 0.803598 | 3.23E-49 | -1.69E-46 |
MS.gene057249 | MS.gene47348 | 0.836039 | 1.18E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47348.t1 | MTR_1g061170 | 93.900 | 459 | 26 | 1 | 64 | 520 | 1 | 459 | 0.0 | 877 |
MS.gene47348.t1 | MTR_1g061170 | 93.484 | 353 | 23 | 0 | 168 | 520 | 12 | 364 | 0.0 | 683 |
MS.gene47348.t1 | MTR_1g061170 | 92.933 | 283 | 20 | 0 | 238 | 520 | 1 | 283 | 0.0 | 546 |
MS.gene47348.t1 | MTR_5g029680 | 48.996 | 249 | 113 | 3 | 94 | 328 | 16 | 264 | 6.75e-73 | 240 |
MS.gene47348.t1 | MTR_3g104550 | 41.573 | 356 | 177 | 12 | 97 | 446 | 33 | 363 | 7.17e-72 | 234 |
MS.gene47348.t1 | MTR_1g102860 | 50.870 | 230 | 106 | 4 | 88 | 310 | 15 | 244 | 5.59e-69 | 224 |
MS.gene47348.t1 | MTR_7g095680 | 46.816 | 267 | 134 | 4 | 76 | 335 | 16 | 281 | 7.64e-69 | 225 |
MS.gene47348.t1 | MTR_4g077970 | 41.254 | 303 | 151 | 6 | 108 | 386 | 10 | 309 | 4.23e-68 | 227 |
MS.gene47348.t1 | MTR_1g071360 | 51.053 | 190 | 84 | 2 | 97 | 286 | 19 | 199 | 6.67e-57 | 193 |
MS.gene47348.t1 | MTR_1g071360 | 51.053 | 190 | 84 | 2 | 97 | 286 | 16 | 196 | 1.42e-56 | 193 |
MS.gene47348.t1 | MTR_2g100680 | 41.892 | 222 | 116 | 2 | 86 | 307 | 18 | 226 | 2.74e-49 | 176 |
MS.gene47348.t1 | MTR_6g043060 | 41.584 | 202 | 111 | 3 | 108 | 307 | 20 | 216 | 2.32e-46 | 165 |
MS.gene47348.t1 | MTR_8g105780 | 38.235 | 272 | 149 | 6 | 108 | 370 | 20 | 281 | 3.51e-46 | 166 |
MS.gene47348.t1 | MTR_8g087540 | 42.473 | 186 | 105 | 1 | 106 | 289 | 8 | 193 | 1.62e-45 | 164 |
MS.gene47348.t1 | MTR_8g083100 | 34.700 | 317 | 174 | 10 | 111 | 410 | 23 | 323 | 1.89e-45 | 166 |
MS.gene47348.t1 | MTR_2g100670 | 43.386 | 189 | 105 | 1 | 110 | 298 | 33 | 219 | 7.07e-45 | 160 |
MS.gene47348.t1 | MTR_2g100670 | 43.386 | 189 | 105 | 1 | 110 | 298 | 141 | 327 | 5.47e-44 | 161 |
MS.gene47348.t1 | MTR_6g086805 | 39.604 | 202 | 120 | 2 | 104 | 305 | 5 | 204 | 5.77e-44 | 159 |
MS.gene47348.t1 | MTR_3g101870 | 67.000 | 100 | 33 | 0 | 110 | 209 | 24 | 123 | 2.27e-39 | 147 |
MS.gene47348.t1 | MTR_2g017890 | 36.598 | 194 | 111 | 2 | 108 | 296 | 13 | 199 | 1.32e-38 | 145 |
MS.gene47348.t1 | MTR_5g010680 | 62.245 | 98 | 37 | 0 | 104 | 201 | 18 | 115 | 1.61e-38 | 144 |
MS.gene47348.t1 | MTR_7g091370 | 45.283 | 159 | 76 | 1 | 100 | 247 | 12 | 170 | 1.79e-38 | 140 |
MS.gene47348.t1 | MTR_5g017470 | 40.000 | 205 | 108 | 4 | 104 | 293 | 3 | 207 | 8.28e-38 | 140 |
MS.gene47348.t1 | MTR_5g089170 | 44.654 | 159 | 67 | 2 | 104 | 241 | 19 | 177 | 2.42e-35 | 133 |
MS.gene47348.t1 | MTR_0020s0020 | 61.957 | 92 | 35 | 0 | 110 | 201 | 33 | 124 | 7.67e-35 | 134 |
MS.gene47348.t1 | MTR_1g100777 | 58.163 | 98 | 41 | 0 | 104 | 201 | 12 | 109 | 2.25e-34 | 132 |
MS.gene47348.t1 | MTR_4g088900 | 42.361 | 144 | 78 | 2 | 109 | 248 | 32 | 174 | 8.41e-31 | 119 |
MS.gene47348.t1 | MTR_4g045757 | 55.882 | 68 | 29 | 1 | 108 | 174 | 12 | 79 | 1.53e-18 | 80.5 |
MS.gene47348.t1 | MTR_5g047190 | 43.478 | 92 | 45 | 2 | 118 | 202 | 1 | 92 | 2.60e-17 | 77.8 |
MS.gene47348.t1 | MTR_4g077970 | 30.909 | 165 | 95 | 4 | 238 | 386 | 1 | 162 | 2.17e-13 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47348.t1 | AT5G03720 | 58.594 | 256 | 102 | 2 | 90 | 341 | 35 | 290 | 1.16e-97 | 301 |
MS.gene47348.t1 | AT5G03720 | 58.594 | 256 | 102 | 2 | 90 | 341 | 35 | 290 | 1.16e-97 | 301 |
MS.gene47348.t1 | AT5G16820 | 45.270 | 296 | 141 | 6 | 108 | 382 | 25 | 320 | 1.92e-70 | 233 |
MS.gene47348.t1 | AT5G16820 | 45.270 | 296 | 141 | 6 | 108 | 382 | 25 | 320 | 1.92e-70 | 233 |
MS.gene47348.t1 | AT1G32330 | 46.008 | 263 | 119 | 4 | 89 | 328 | 11 | 273 | 3.25e-69 | 230 |
MS.gene47348.t1 | AT1G32330 | 46.008 | 263 | 119 | 4 | 89 | 328 | 11 | 273 | 3.61e-69 | 230 |
MS.gene47348.t1 | AT3G02990 | 47.368 | 266 | 121 | 5 | 105 | 356 | 18 | 278 | 1.53e-68 | 228 |
MS.gene47348.t1 | AT4G17750 | 44.604 | 278 | 118 | 6 | 87 | 328 | 19 | 296 | 2.93e-66 | 223 |
MS.gene47348.t1 | AT3G22830 | 46.753 | 231 | 113 | 2 | 86 | 306 | 37 | 267 | 3.07e-64 | 214 |
MS.gene47348.t1 | AT2G26150 | 49.537 | 216 | 101 | 3 | 97 | 305 | 31 | 245 | 5.27e-63 | 209 |
MS.gene47348.t1 | AT2G26150 | 49.537 | 216 | 101 | 3 | 97 | 305 | 31 | 245 | 5.27e-63 | 209 |
MS.gene47348.t1 | AT3G63350 | 49.751 | 201 | 99 | 1 | 97 | 297 | 15 | 213 | 4.43e-61 | 202 |
MS.gene47348.t1 | AT3G51910 | 47.393 | 211 | 93 | 3 | 100 | 305 | 19 | 216 | 4.34e-57 | 191 |
MS.gene47348.t1 | AT5G43840 | 40.816 | 245 | 126 | 5 | 95 | 337 | 4 | 231 | 4.26e-55 | 187 |
MS.gene47348.t1 | AT5G54070 | 39.819 | 221 | 122 | 3 | 104 | 320 | 65 | 278 | 6.02e-50 | 174 |
MS.gene47348.t1 | AT1G67970 | 41.333 | 225 | 128 | 3 | 108 | 328 | 17 | 241 | 1.55e-49 | 175 |
MS.gene47348.t1 | AT4G13980 | 40.609 | 197 | 115 | 1 | 111 | 307 | 24 | 218 | 6.81e-47 | 170 |
MS.gene47348.t1 | AT3G24520 | 45.213 | 188 | 82 | 4 | 108 | 295 | 15 | 181 | 2.82e-44 | 159 |
MS.gene47348.t1 | AT5G45710 | 39.896 | 193 | 114 | 1 | 106 | 296 | 9 | 201 | 1.99e-41 | 152 |
MS.gene47348.t1 | AT5G45710 | 39.896 | 193 | 114 | 1 | 106 | 296 | 9 | 201 | 1.99e-41 | 152 |
MS.gene47348.t1 | AT4G18880 | 43.850 | 187 | 102 | 1 | 106 | 289 | 11 | 197 | 9.12e-40 | 149 |
MS.gene47348.t1 | AT5G62020 | 57.143 | 105 | 45 | 0 | 104 | 208 | 17 | 121 | 2.93e-37 | 139 |
MS.gene47348.t1 | AT1G46264 | 65.263 | 95 | 33 | 0 | 110 | 204 | 34 | 128 | 5.63e-37 | 140 |
MS.gene47348.t1 | AT4G11660 | 60.396 | 101 | 40 | 0 | 104 | 204 | 53 | 153 | 1.26e-36 | 140 |
MS.gene47348.t1 | AT4G36990 | 36.792 | 212 | 125 | 3 | 98 | 300 | 2 | 213 | 3.87e-36 | 136 |
MS.gene47348.t1 | AT2G41690 | 47.887 | 142 | 56 | 3 | 61 | 202 | 9 | 132 | 9.55e-36 | 134 |
MS.gene47348.t1 | AT2G26150 | 46.154 | 143 | 69 | 3 | 170 | 305 | 49 | 190 | 7.12e-29 | 116 |
MS.gene47348.t1 | AT2G26150 | 46.154 | 143 | 69 | 3 | 170 | 305 | 49 | 190 | 7.12e-29 | 116 |
MS.gene47348.t1 | AT4G18870 | 45.161 | 93 | 50 | 1 | 105 | 197 | 8 | 99 | 9.17e-20 | 90.1 |
MS.gene47348.t1 | AT4G18870 | 31.944 | 144 | 96 | 1 | 110 | 251 | 146 | 289 | 3.13e-19 | 88.6 |
Find 108 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAGTGCTTCTTCCCTTTC+TGG | 0.084023 | 1.1:+46492395 | None:intergenic |
CAAAGATGAAGAAGAAAATT+TGG | 0.205164 | 1.1:+46493440 | None:intergenic |
CCTCACTATCTTTCCATCTT+TGG | 0.222284 | 1.1:+46491824 | None:intergenic |
AATTCAGAAACTAATATTAT+TGG | 0.230607 | 1.1:-46491606 | MS.gene47348:CDS |
TTTGAAGGGTTTCAATCTAT+TGG | 0.240093 | 1.1:-46491495 | MS.gene47348:CDS |
GAAGTTTGGGTATTGATAAT+TGG | 0.249663 | 1.1:-46491302 | MS.gene47348:CDS |
TTGATGGCGGTGGAAGAAAA+TGG | 0.257158 | 1.1:+46493650 | None:intergenic |
GAAACAAATGGTATCTTTCT+TGG | 0.279705 | 1.1:-46491970 | MS.gene47348:CDS |
CTTTGTTGTTTGGGATCCTT+TGG | 0.287745 | 1.1:-46493250 | MS.gene47348:CDS |
TCACCTTTAGTCATTTCTTT+AGG | 0.294012 | 1.1:+46491702 | None:intergenic |
GATATGTGGGATATTGGTTT+TGG | 0.304447 | 1.1:-46491324 | MS.gene47348:CDS |
TTATCAAGCAAGAAGATATA+TGG | 0.310553 | 1.1:-46491461 | MS.gene47348:CDS |
TAGTGAGGTACCAACCAAAT+TGG | 0.312029 | 1.1:-46491809 | MS.gene47348:CDS |
ATGTGGGATCCTTTGAATTA+TGG | 0.316094 | 1.1:-46491387 | MS.gene47348:CDS |
TGGTGTTAGCTTTGTTGTTT+GGG | 0.316297 | 1.1:-46493259 | MS.gene47348:CDS |
AGGGCGGTGGAAGGTGAGGG+GGG | 0.321083 | 1.1:+46493614 | None:intergenic |
TTGAAGGGTTTCAATCTATT+GGG | 0.328172 | 1.1:-46491494 | MS.gene47348:CDS |
TCAGGAATAACTTCTTCATT+TGG | 0.329440 | 1.1:+46491522 | None:intergenic |
GGAGAAGGATCATCTAGTTT+TGG | 0.332158 | 1.1:-46491585 | MS.gene47348:CDS |
ATGGTGTTAGCTTTGTTGTT+TGG | 0.339618 | 1.1:-46493260 | MS.gene47348:CDS |
GGAAAGGGCGGTGGAAGGTG+AGG | 0.341219 | 1.1:+46493610 | None:intergenic |
ACAAACTTTCTTCTAACTCT+TGG | 0.347851 | 1.1:+46491876 | None:intergenic |
AAGGGCGGTGGAAGGTGAGG+GGG | 0.365244 | 1.1:+46493613 | None:intergenic |
AGTGAGGTACCAACCAAATT+GGG | 0.367055 | 1.1:-46491808 | MS.gene47348:CDS |
TCTCTATTAGCAGGGAAATC+TGG | 0.369457 | 1.1:-46492134 | MS.gene47348:intron |
ACAGCACCAACATTGAAGTT+AGG | 0.369889 | 1.1:+46491435 | None:intergenic |
ATTAAGCTGACGAACAAAAC+TGG | 0.370082 | 1.1:+46493179 | None:intergenic |
TTTGAAAGAAATGGTGGAAC+TGG | 0.396168 | 1.1:+46493339 | None:intergenic |
AAAGATGAAGAAGAAAATTT+GGG | 0.405694 | 1.1:+46493441 | None:intergenic |
GCAAAATTGACACCGACAAA+TGG | 0.406829 | 1.1:-46492438 | MS.gene47348:CDS |
AAAGGGCGGTGGAAGGTGAG+GGG | 0.412400 | 1.1:+46493612 | None:intergenic |
AGGTTGAGATTGAAAGATTG+AGG | 0.415211 | 1.1:-46492106 | MS.gene47348:CDS |
ATGTCAGATATGTGGGATAT+TGG | 0.416242 | 1.1:-46491330 | MS.gene47348:CDS |
TGATGGCGGTGGAAGAAAAT+GGG | 0.419504 | 1.1:+46493651 | None:intergenic |
TGAGATTGAAAGATTGAGGA+AGG | 0.438960 | 1.1:-46492102 | MS.gene47348:CDS |
GTTGGATCTTCTTCTGATGC+AGG | 0.443789 | 1.1:-46492319 | MS.gene47348:intron |
AATTATGGAGTACCTGACTT+TGG | 0.444329 | 1.1:-46491372 | MS.gene47348:CDS |
TTCAATGAAGGTTTCCAGAA+AGG | 0.444610 | 1.1:-46492409 | MS.gene47348:CDS |
GGGCGGTGGAAGGTGAGGGG+GGG | 0.444659 | 1.1:+46493615 | None:intergenic |
TGAAACCCTTCAAAATTCTC+AGG | 0.455295 | 1.1:+46491504 | None:intergenic |
GAAGAAGAAAATGCCAAAGA+TGG | 0.458087 | 1.1:-46491837 | MS.gene47348:CDS |
GAAAGGGCGGTGGAAGGTGA+GGG | 0.465570 | 1.1:+46493611 | None:intergenic |
TGGTGGTGTTGAATATAAAA+AGG | 0.466106 | 1.1:+46493585 | None:intergenic |
TAGTGATGTTCCTGTGCCTA+TGG | 0.466887 | 1.1:-46493379 | MS.gene47348:CDS |
CTTTGAATCCGATCATATCA+TGG | 0.467206 | 1.1:-46493290 | MS.gene47348:CDS |
TCAATGAAGGTTTCCAGAAA+GGG | 0.468452 | 1.1:-46492408 | MS.gene47348:CDS |
GAATATGAAGCATCAGCTAT+AGG | 0.469331 | 1.1:-46493414 | MS.gene47348:CDS |
TGACTATCTATTTCATCAAA+AGG | 0.470522 | 1.1:+46491264 | None:intergenic |
TATCAAGCAAGAAGATATAT+GGG | 0.482434 | 1.1:-46491460 | MS.gene47348:CDS |
CAGCAAGTTGGTAACTATGT+TGG | 0.484482 | 1.1:-46492337 | MS.gene47348:CDS |
CAGCACCAACATTGAAGTTA+GGG | 0.486019 | 1.1:+46491436 | None:intergenic |
CAAAATTGACACCGACAAAT+GGG | 0.486680 | 1.1:-46492437 | MS.gene47348:CDS |
GAAACTAATATTATTGGAGA+AGG | 0.489813 | 1.1:-46491600 | MS.gene47348:CDS |
TCAGCTATAGGTGGTGGTAC+TGG | 0.505325 | 1.1:-46493402 | MS.gene47348:CDS |
AGCGCGACTTAAGCAGAAGA+AGG | 0.506475 | 1.1:-46491919 | MS.gene47348:CDS |
TAGTAGTAGTTTGATGGCGG+TGG | 0.513022 | 1.1:+46493640 | None:intergenic |
CTACCTAAAGAAATGACTAA+AGG | 0.514970 | 1.1:-46491705 | MS.gene47348:CDS |
TCAAAAGGAGATTCATCAGC+TGG | 0.517066 | 1.1:+46491279 | None:intergenic |
TTGAAAGATTGAGGAAGGAG+AGG | 0.521106 | 1.1:-46492097 | MS.gene47348:CDS |
GATATGATCGGATTCAAAGA+AGG | 0.522372 | 1.1:+46493294 | None:intergenic |
AGATCAAGTGAAAGATAGTG+AGG | 0.532262 | 1.1:+46491726 | None:intergenic |
AGGAGGGAAAGGGCGGTGGA+AGG | 0.533803 | 1.1:+46493605 | None:intergenic |
TTGAAAGAAATGGTGGAACT+GGG | 0.536323 | 1.1:+46493340 | None:intergenic |
AACAACAAAGCTAACACCAT+TGG | 0.540487 | 1.1:+46493263 | None:intergenic |
GTCCGGATTTGAAAACAACT+TGG | 0.541092 | 1.1:+46491947 | None:intergenic |
TGAACAAAGACAGAAACAAA+TGG | 0.541684 | 1.1:-46491982 | MS.gene47348:CDS |
GGGGTGTAGTAGTAGTTTGA+TGG | 0.544687 | 1.1:+46493634 | None:intergenic |
CTTGTAACAACTCCAAAGTC+AGG | 0.546441 | 1.1:+46491360 | None:intergenic |
CGAATGACGGCTAGTCACGC+AGG | 0.554003 | 1.1:-46492032 | MS.gene47348:CDS |
CTTGCTGAGATTGAGACGTC+CGG | 0.564728 | 1.1:+46492353 | None:intergenic |
GATGAATATGCTGCAATGCA+TGG | 0.570282 | 1.1:-46491642 | MS.gene47348:CDS |
TGGGACCCTAACTTCAATGT+TGG | 0.572995 | 1.1:-46491441 | MS.gene47348:CDS |
GGAGAGGGGTGTGAATCGAA+AGG | 0.573002 | 1.1:+46493528 | None:intergenic |
TGAAGAGCATTCAAAGGCGC+CGG | 0.575159 | 1.1:-46492372 | MS.gene47348:CDS |
ATAACTCTTGCAAACTCCAA+AGG | 0.576307 | 1.1:+46493234 | None:intergenic |
GTGGTGACATGTCAGATATG+TGG | 0.577350 | 1.1:-46491338 | MS.gene47348:CDS |
GAAGCATCAGCTATAGGTGG+TGG | 0.582607 | 1.1:-46493408 | MS.gene47348:CDS |
ATCATATCATGGAGTTCCAA+TGG | 0.583067 | 1.1:-46493279 | MS.gene47348:CDS |
TTGGAACTCCATGATATGAT+CGG | 0.584421 | 1.1:+46493282 | None:intergenic |
TCAGGTACTCCATAATTCAA+AGG | 0.586697 | 1.1:+46491378 | None:intergenic |
CTCATCTGCAAACACTCCAT+AGG | 0.589952 | 1.1:+46493363 | None:intergenic |
GTGAGGTACCAACCAAATTG+GGG | 0.592193 | 1.1:-46491807 | MS.gene47348:CDS |
ATATGATCGGATTCAAAGAA+GGG | 0.594477 | 1.1:+46493295 | None:intergenic |
TTGTTGTGTTTGAAGTGTCT+AGG | 0.595204 | 1.1:+46493207 | None:intergenic |
TGCAAACACTCCATAGGCAC+AGG | 0.597520 | 1.1:+46493369 | None:intergenic |
ACGCAGGTAATGTGAATCAA+AGG | 0.601321 | 1.1:-46492016 | MS.gene47348:CDS |
TTTGATGAAATAGATAGTCA+AGG | 0.610338 | 1.1:-46491261 | MS.gene47348:CDS |
TGGTGACATGTCAGATATGT+GGG | 0.612349 | 1.1:-46491337 | MS.gene47348:CDS |
CAAACTGTGGGAATGAGATG+TGG | 0.613012 | 1.1:-46491404 | MS.gene47348:CDS |
ACGTCTCAATCTCAGCAAGT+TGG | 0.616416 | 1.1:-46492349 | MS.gene47348:CDS |
ACAGCAGCAACAACGAATGA+CGG | 0.617265 | 1.1:-46492045 | MS.gene47348:CDS |
AAGAAGAATAGAGTGAAGTG+TGG | 0.621760 | 1.1:+46493565 | None:intergenic |
GACTTTGGAGTTGTTACAAG+TGG | 0.625352 | 1.1:-46491357 | MS.gene47348:CDS |
AGCAGGGAAATCTGGAGTCG+AGG | 0.626680 | 1.1:-46492126 | MS.gene47348:intron |
CCAAAGATGGAAAGATAGTG+AGG | 0.628156 | 1.1:-46491824 | MS.gene47348:CDS |
ACTTACTGAAGAGCATTCAA+AGG | 0.637027 | 1.1:-46492378 | MS.gene47348:CDS |
CTGTTGCTACTTCAAACTGT+GGG | 0.638412 | 1.1:-46491416 | MS.gene47348:CDS |
GATGAAATAGATAGTCAAGG+TGG | 0.640962 | 1.1:-46491258 | MS.gene47348:CDS |
GTGTAGTAGTAGTTTGATGG+CGG | 0.650343 | 1.1:+46493637 | None:intergenic |
AAGAATAGAGTGAAGTGTGG+TGG | 0.650413 | 1.1:+46493568 | None:intergenic |
GACTGTGTTAATGCAAGAAG+TGG | 0.653059 | 1.1:-46492075 | MS.gene47348:CDS |
AAACTGTGGGAATGAGATGT+GGG | 0.653938 | 1.1:-46491403 | MS.gene47348:CDS |
GATGGCGGTGGAAGAAAATG+GGG | 0.657577 | 1.1:+46493652 | None:intergenic |
GCTGTTGCTACTTCAAACTG+TGG | 0.663813 | 1.1:-46491417 | MS.gene47348:CDS |
TATGAAGCATCAGCTATAGG+TGG | 0.681407 | 1.1:-46493411 | MS.gene47348:CDS |
GGGGTGTGAATCGAAAGGTG+AGG | 0.696236 | 1.1:+46493533 | None:intergenic |
TGAGGTACCAACCAAATTGG+GGG | 0.710225 | 1.1:-46491806 | MS.gene47348:CDS |
ATGGCGGTGGAAGAAAATGG+GGG | 0.732830 | 1.1:+46493653 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTCAGAAACTAATATTAT+TGG | - | chr1.1:46493287-46493306 | MS.gene47348:CDS | 15.0% |
!! | TTACATTACATAGATTAATA+GGG | + | chr1.1:46491802-46491821 | None:intergenic | 15.0% |
!! | TTGAATAATAACAGAAAAAA+CGG | + | chr1.1:46491397-46491416 | None:intergenic | 15.0% |
!! | AAAGATGAAGAAGAAAATTT+GGG | + | chr1.1:46491455-46491474 | None:intergenic | 20.0% |
!! | AACAATTTGATGTATCAATT+GGG | - | chr1.1:46491915-46491934 | MS.gene47348:CDS | 20.0% |
!! | GTTACATTACATAGATTAAT+AGG | + | chr1.1:46491803-46491822 | None:intergenic | 20.0% |
!! | TACATTACATAGATTAATAG+GGG | + | chr1.1:46491801-46491820 | None:intergenic | 20.0% |
!! | TCTTTCAAAAACATTTGATT+TGG | - | chr1.1:46491568-46491587 | MS.gene47348:CDS | 20.0% |
!! | TTATTCATTCTCAGATAATT+TGG | - | chr1.1:46492412-46492431 | MS.gene47348:CDS | 20.0% |
!!! | AACATTTTTTCCTTTGAAAA+GGG | + | chr1.1:46493345-46493364 | None:intergenic | 20.0% |
!!! | TAACATTTTTTCCTTTGAAA+AGG | + | chr1.1:46493346-46493365 | None:intergenic | 20.0% |
!!! | TCAAATGTTTTTGAAAGAAA+TGG | + | chr1.1:46491566-46491585 | None:intergenic | 20.0% |
! | AGAATGAATAAAACAGACAT+AGG | + | chr1.1:46492403-46492422 | None:intergenic | 25.0% |
! | CAAAGATGAAGAAGAAAATT+TGG | + | chr1.1:46491456-46491475 | None:intergenic | 25.0% |
! | GAAACTAATATTATTGGAGA+AGG | - | chr1.1:46493293-46493312 | MS.gene47348:CDS | 25.0% |
! | GAACAATTTGATGTATCAAT+TGG | - | chr1.1:46491914-46491933 | MS.gene47348:CDS | 25.0% |
! | TATCAAGCAAGAAGATATAT+GGG | - | chr1.1:46493433-46493452 | MS.gene47348:CDS | 25.0% |
! | TGACTATCTATTTCATCAAA+AGG | + | chr1.1:46493632-46493651 | None:intergenic | 25.0% |
! | TTATCAAGCAAGAAGATATA+TGG | - | chr1.1:46493432-46493451 | MS.gene47348:CDS | 25.0% |
! | TTCAATCAACAAACACAAAA+GGG | + | chr1.1:46491897-46491916 | None:intergenic | 25.0% |
! | TTTGATGAAATAGATAGTCA+AGG | - | chr1.1:46493632-46493651 | MS.gene47348:CDS | 25.0% |
!! | ATTTTCTTCTTCATCTTTGA+TGG | - | chr1.1:46491457-46491476 | MS.gene47348:CDS | 25.0% |
!! | TCACATCAAACCTTTTATAT+AGG | - | chr1.1:46492647-46492666 | MS.gene47348:intron | 25.0% |
!! | TTATTCCTGAGAATTTTGAA+GGG | - | chr1.1:46493384-46493403 | MS.gene47348:CDS | 25.0% |
!!! | AAGCTTGTCTTTTTTTGTTT+TGG | - | chr1.1:46492270-46492289 | MS.gene47348:intron | 25.0% |
!!! | AATGTTTTTGAAAGAAATGG+TGG | + | chr1.1:46491563-46491582 | None:intergenic | 25.0% |
!!! | ACATTTTTTCCTTTGAAAAG+GGG | + | chr1.1:46493344-46493363 | None:intergenic | 25.0% |
!!! | AGTTTGTTAGCCTATATAAA+AGG | + | chr1.1:46492660-46492679 | None:intergenic | 25.0% |
!!! | TAACAGAAAAAACGGTTTTT+TGG | + | chr1.1:46491389-46491408 | None:intergenic | 25.0% |
AAGATGAAAATCCCTTGAAA+AGG | + | chr1.1:46492167-46492186 | None:intergenic | 30.0% | |
ACAAACTTTCTTCTAACTCT+TGG | + | chr1.1:46493020-46493039 | None:intergenic | 30.0% | |
AGATGAAAATCCCTTGAAAA+GGG | + | chr1.1:46492166-46492185 | None:intergenic | 30.0% | |
ATATGATCGGATTCAAAGAA+GGG | + | chr1.1:46491601-46491620 | None:intergenic | 30.0% | |
ATTGAAAAACTCCCATTTGT+CGG | + | chr1.1:46492470-46492489 | None:intergenic | 30.0% | |
CTACCTAAAGAAATGACTAA+AGG | - | chr1.1:46493188-46493207 | MS.gene47348:CDS | 30.0% | |
GAAACAAATGGTATCTTTCT+TGG | - | chr1.1:46492923-46492942 | MS.gene47348:intron | 30.0% | |
GAATATAAAAAGGAGGGAAA+GGG | + | chr1.1:46491301-46491320 | None:intergenic | 30.0% | |
GTTCAATCAACAAACACAAA+AGG | + | chr1.1:46491898-46491917 | None:intergenic | 30.0% | |
TAACTGTATCTCTATTAGCA+GGG | - | chr1.1:46492751-46492770 | MS.gene47348:intron | 30.0% | |
TACAATACAGTTAGCTGTAT+TGG | + | chr1.1:46492313-46492332 | None:intergenic | 30.0% | |
TCAATCAACAAACACAAAAG+GGG | + | chr1.1:46491896-46491915 | None:intergenic | 30.0% | |
TCACCTTTAGTCATTTCTTT+AGG | + | chr1.1:46493194-46493213 | None:intergenic | 30.0% | |
TCAGGAATAACTTCTTCATT+TGG | + | chr1.1:46493374-46493393 | None:intergenic | 30.0% | |
TGAACAAAGACAGAAACAAA+TGG | - | chr1.1:46492911-46492930 | MS.gene47348:intron | 30.0% | |
TGAATATAAAAAGGAGGGAA+AGG | + | chr1.1:46491302-46491321 | None:intergenic | 30.0% | |
TTGAAGGGTTTCAATCTATT+GGG | - | chr1.1:46493399-46493418 | MS.gene47348:CDS | 30.0% | |
TTTGAAGGGTTTCAATCTAT+TGG | - | chr1.1:46493398-46493417 | MS.gene47348:CDS | 30.0% | |
! | GGTGTTGAATATAAAAAGGA+GGG | + | chr1.1:46491307-46491326 | None:intergenic | 30.0% |
! | GTTATTCCTGAGAATTTTGA+AGG | - | chr1.1:46493383-46493402 | MS.gene47348:CDS | 30.0% |
! | TGGCATTTTCTTCTTCATTT+TGG | + | chr1.1:46493052-46493071 | None:intergenic | 30.0% |
! | TGGTGGTGTTGAATATAAAA+AGG | + | chr1.1:46491311-46491330 | None:intergenic | 30.0% |
! | TGGTGTTGAATATAAAAAGG+AGG | + | chr1.1:46491308-46491327 | None:intergenic | 30.0% |
!! | AAATGGGAGTTTTTCAATGA+AGG | - | chr1.1:46492472-46492491 | MS.gene47348:intron | 30.0% |
!! | GAAGTTTGGGTATTGATAAT+TGG | - | chr1.1:46493591-46493610 | MS.gene47348:CDS | 30.0% |
!! | TGTGTTTTTGTTACTACTAG+TGG | - | chr1.1:46492009-46492028 | MS.gene47348:CDS | 30.0% |
!!! | AAAAAACGGTTTTTTGGAGA+GGG | + | chr1.1:46491383-46491402 | None:intergenic | 30.0% |
!!! | ATAATTTGGTTTTTGAGCAC+AGG | - | chr1.1:46492426-46492445 | MS.gene47348:CDS | 30.0% |
!!! | GATATTGGTTTTGGAAGTTT+GGG | - | chr1.1:46493578-46493597 | MS.gene47348:CDS | 30.0% |
!!! | GGAGAGTTTTTTTCATCATT+TGG | + | chr1.1:46491434-46491453 | None:intergenic | 30.0% |
!!! | TAATTTGGTTTTTGAGCACA+GGG | - | chr1.1:46492427-46492446 | MS.gene47348:CDS | 30.0% |
AACAACAAAGCTAACACCAT+TGG | + | chr1.1:46491633-46491652 | None:intergenic | 35.0% | |
AAGAAGAATAGAGTGAAGTG+TGG | + | chr1.1:46491331-46491350 | None:intergenic | 35.0% | |
ACTACACAATGCAATCAATC+AGG | + | chr1.1:46492085-46492104 | None:intergenic | 35.0% | |
AGATCAAGTGAAAGATAGTG+AGG | + | chr1.1:46493170-46493189 | None:intergenic | 35.0% | |
AGGTTGAGATTGAAAGATTG+AGG | - | chr1.1:46492787-46492806 | MS.gene47348:intron | 35.0% | |
ATAACTCTTGCAAACTCCAA+AGG | + | chr1.1:46491662-46491681 | None:intergenic | 35.0% | |
ATCATATCATGGAGTTCCAA+TGG | - | chr1.1:46491614-46491633 | MS.gene47348:CDS | 35.0% | |
ATGTCAGATATGTGGGATAT+TGG | - | chr1.1:46493563-46493582 | MS.gene47348:CDS | 35.0% | |
ATGTCTATATTCCCCCAATT+TGG | + | chr1.1:46493101-46493120 | None:intergenic | 35.0% | |
ATGTGGGATCCTTTGAATTA+TGG | - | chr1.1:46493506-46493525 | MS.gene47348:CDS | 35.0% | |
ATTAAGCTGACGAACAAAAC+TGG | + | chr1.1:46491717-46491736 | None:intergenic | 35.0% | |
CAAAATTGACACCGACAAAT+GGG | - | chr1.1:46492456-46492475 | MS.gene47348:intron | 35.0% | |
CAATCAACAAACACAAAAGG+GGG | + | chr1.1:46491895-46491914 | None:intergenic | 35.0% | |
CGTCAGCTTAATACTTATGT+GGG | - | chr1.1:46491725-46491744 | MS.gene47348:CDS | 35.0% | |
CTAACTGTATCTCTATTAGC+AGG | - | chr1.1:46492750-46492769 | MS.gene47348:intron | 35.0% | |
CTTTGAATCCGATCATATCA+TGG | - | chr1.1:46491603-46491622 | MS.gene47348:CDS | 35.0% | |
GAAGAAGAAAATGCCAAAGA+TGG | - | chr1.1:46493056-46493075 | MS.gene47348:intron | 35.0% | |
GATATGATCGGATTCAAAGA+AGG | + | chr1.1:46491602-46491621 | None:intergenic | 35.0% | |
GATGAAATAGATAGTCAAGG+TGG | - | chr1.1:46493635-46493654 | MS.gene47348:CDS | 35.0% | |
TCAATGAAGGTTTCCAGAAA+GGG | - | chr1.1:46492485-46492504 | MS.gene47348:intron | 35.0% | |
TCAGGTACTCCATAATTCAA+AGG | + | chr1.1:46493518-46493537 | None:intergenic | 35.0% | |
TCGTCAGCTTAATACTTATG+TGG | - | chr1.1:46491724-46491743 | MS.gene47348:CDS | 35.0% | |
TGAAACCCTTCAAAATTCTC+AGG | + | chr1.1:46493392-46493411 | None:intergenic | 35.0% | |
TGAGATTGAAAGATTGAGGA+AGG | - | chr1.1:46492791-46492810 | MS.gene47348:intron | 35.0% | |
TTCAATGAAGGTTTCCAGAA+AGG | - | chr1.1:46492484-46492503 | MS.gene47348:intron | 35.0% | |
TTGGAACTCCATGATATGAT+CGG | + | chr1.1:46491614-46491633 | None:intergenic | 35.0% | |
! | AAGGGATTTTCATCTTTCCA+AGG | - | chr1.1:46492171-46492190 | MS.gene47348:intron | 35.0% |
! | AATTATGGAGTACCTGACTT+TGG | - | chr1.1:46493521-46493540 | MS.gene47348:CDS | 35.0% |
! | ACTTTTCACAATGCCTCTAA+TGG | - | chr1.1:46491775-46491794 | MS.gene47348:CDS | 35.0% |
! | ATAGTGAGGAGAGTTTTCAA+TGG | + | chr1.1:46493156-46493175 | None:intergenic | 35.0% |
! | GAATATGAAGCATCAGCTAT+AGG | - | chr1.1:46491479-46491498 | MS.gene47348:CDS | 35.0% |
! | GATTTTCATCTTTCCAAGGT+AGG | - | chr1.1:46492175-46492194 | MS.gene47348:intron | 35.0% |
! | TTGAAAGAAATGGTGGAACT+GGG | + | chr1.1:46491556-46491575 | None:intergenic | 35.0% |
! | TTGTTGTGTTTGAAGTGTCT+AGG | + | chr1.1:46491689-46491708 | None:intergenic | 35.0% |
! | TTTGAAAGAAATGGTGGAAC+TGG | + | chr1.1:46491557-46491576 | None:intergenic | 35.0% |
!! | ACTTACTGAAGAGCATTCAA+AGG | - | chr1.1:46492515-46492534 | MS.gene47348:intron | 35.0% |
!! | ATGGTGTTAGCTTTGTTGTT+TGG | - | chr1.1:46491633-46491652 | MS.gene47348:CDS | 35.0% |
!! | TGGTGTTAGCTTTGTTGTTT+GGG | - | chr1.1:46491634-46491653 | MS.gene47348:CDS | 35.0% |
!!! | AAAAACGGTTTTTTGGAGAG+GGG | + | chr1.1:46491382-46491401 | None:intergenic | 35.0% |
!!! | ATTTGTCGGTGTCAATTTTG+CGG | + | chr1.1:46492456-46492475 | None:intergenic | 35.0% |
!!! | GAAAAAACGGTTTTTTGGAG+AGG | + | chr1.1:46491384-46491403 | None:intergenic | 35.0% |
!!! | GATATGTGGGATATTGGTTT+TGG | - | chr1.1:46493569-46493588 | MS.gene47348:CDS | 35.0% |
!!! | GGATATTGGTTTTGGAAGTT+TGG | - | chr1.1:46493577-46493596 | MS.gene47348:CDS | 35.0% |
AAACTGTGGGAATGAGATGT+GGG | - | chr1.1:46493490-46493509 | MS.gene47348:CDS | 40.0% | |
AAGAATAGAGTGAAGTGTGG+TGG | + | chr1.1:46491328-46491347 | None:intergenic | 40.0% | |
ACACAATGCAATCAATCAGG+AGG | + | chr1.1:46492082-46492101 | None:intergenic | 40.0% | |
ACAGCACCAACATTGAAGTT+AGG | + | chr1.1:46493461-46493480 | None:intergenic | 40.0% | |
ACGCAGGTAATGTGAATCAA+AGG | - | chr1.1:46492877-46492896 | MS.gene47348:intron | 40.0% | |
AGACATAGGAGACTCAAGAA+AGG | + | chr1.1:46492389-46492408 | None:intergenic | 40.0% | |
AGATTAATAGGGGCCATTAG+AGG | + | chr1.1:46491791-46491810 | None:intergenic | 40.0% | |
CAGCACCAACATTGAAGTTA+GGG | + | chr1.1:46493460-46493479 | None:intergenic | 40.0% | |
CCAAAGATGGAAAGATAGTG+AGG | - | chr1.1:46493069-46493088 | MS.gene47348:intron | 40.0% | |
CCTCACTATCTTTCCATCTT+TGG | + | chr1.1:46493072-46493091 | None:intergenic | 40.0% | |
CTATATTCCCCCAATTTGGT+TGG | + | chr1.1:46493097-46493116 | None:intergenic | 40.0% | |
CTTGTAACAACTCCAAAGTC+AGG | + | chr1.1:46493536-46493555 | None:intergenic | 40.0% | |
GACTGTGTTAATGCAAGAAG+TGG | - | chr1.1:46492818-46492837 | MS.gene47348:intron | 40.0% | |
GATGAATATGCTGCAATGCA+TGG | - | chr1.1:46493251-46493270 | MS.gene47348:CDS | 40.0% | |
GCAAAATTGACACCGACAAA+TGG | - | chr1.1:46492455-46492474 | MS.gene47348:intron | 40.0% | |
GTCCGGATTTGAAAACAACT+TGG | + | chr1.1:46492949-46492968 | None:intergenic | 40.0% | |
GTGTAGTAGTAGTTTGATGG+CGG | + | chr1.1:46491259-46491278 | None:intergenic | 40.0% | |
TATAAAAAGGAGGGAAAGGG+CGG | + | chr1.1:46491298-46491317 | None:intergenic | 40.0% | |
TCAAAAGGAGATTCATCAGC+TGG | + | chr1.1:46493617-46493636 | None:intergenic | 40.0% | |
TCTCTATTAGCAGGGAAATC+TGG | - | chr1.1:46492759-46492778 | MS.gene47348:intron | 40.0% | |
TGAAACACAGAATCCTACCT+TGG | + | chr1.1:46492191-46492210 | None:intergenic | 40.0% | |
TGGTGACATGTCAGATATGT+GGG | - | chr1.1:46493556-46493575 | MS.gene47348:CDS | 40.0% | |
TTAAGTCGCGCTAAAAAGTC+CGG | + | chr1.1:46492966-46492985 | None:intergenic | 40.0% | |
TTGAAAGATTGAGGAAGGAG+AGG | - | chr1.1:46492796-46492815 | MS.gene47348:intron | 40.0% | |
! | AATGTTGCTCTCCCTTTTCA+AGG | - | chr1.1:46492152-46492171 | MS.gene47348:intron | 40.0% |
! | AGTGAGGTACCAACCAAATT+GGG | - | chr1.1:46493085-46493104 | MS.gene47348:intron | 40.0% |
! | ATGTTGCTCTCCCTTTTCAA+GGG | - | chr1.1:46492153-46492172 | MS.gene47348:intron | 40.0% |
! | CTGTTGCTACTTCAAACTGT+GGG | - | chr1.1:46493477-46493496 | MS.gene47348:CDS | 40.0% |
! | CTTGATGAACCCCTTTTCAA+AGG | - | chr1.1:46493332-46493351 | MS.gene47348:CDS | 40.0% |
! | GGAGAGTTTTCAATGGAAAC+TGG | + | chr1.1:46493149-46493168 | None:intergenic | 40.0% |
! | TAGTGAGGTACCAACCAAAT+TGG | - | chr1.1:46493084-46493103 | MS.gene47348:intron | 40.0% |
! | TATGAAGCATCAGCTATAGG+TGG | - | chr1.1:46491482-46491501 | MS.gene47348:CDS | 40.0% |
!! | CAGCAAGTTGGTAACTATGT+TGG | - | chr1.1:46492556-46492575 | MS.gene47348:intron | 40.0% |
!! | CTTTGTTGTTTGGGATCCTT+TGG | - | chr1.1:46491643-46491662 | MS.gene47348:CDS | 40.0% |
!! | GACTTTGGAGTTGTTACAAG+TGG | - | chr1.1:46493536-46493555 | MS.gene47348:CDS | 40.0% |
!! | GGAGAAGGATCATCTAGTTT+TGG | - | chr1.1:46493308-46493327 | MS.gene47348:CDS | 40.0% |
!! | GGCCAAGTTGTTTTCAAATC+CGG | - | chr1.1:46492944-46492963 | MS.gene47348:intron | 40.0% |
AACAAACACAAAAGGGGGAG+AGG | + | chr1.1:46491890-46491909 | None:intergenic | 45.0% | |
ACAAACACAAAAGGGGGAGA+GGG | + | chr1.1:46491889-46491908 | None:intergenic | 45.0% | |
ACAGCAGCAACAACGAATGA+CGG | - | chr1.1:46492848-46492867 | MS.gene47348:intron | 45.0% | |
ACGTCTCAATCTCAGCAAGT+TGG | - | chr1.1:46492544-46492563 | MS.gene47348:intron | 45.0% | |
ACTGCTGGAATTGGCAACAT+AGG | - | chr1.1:46492125-46492144 | MS.gene47348:intron | 45.0% | |
ATGTTGCCAATTCCAGCAGT+AGG | + | chr1.1:46492125-46492144 | None:intergenic | 45.0% | |
CAAACTGTGGGAATGAGATG+TGG | - | chr1.1:46493489-46493508 | MS.gene47348:CDS | 45.0% | |
CTCATCTGCAAACACTCCAT+AGG | + | chr1.1:46491533-46491552 | None:intergenic | 45.0% | |
GGGGTGTAGTAGTAGTTTGA+TGG | + | chr1.1:46491262-46491281 | None:intergenic | 45.0% | |
GTAAGTGCTTCTTCCCTTTC+TGG | + | chr1.1:46492501-46492520 | None:intergenic | 45.0% | |
GTGGTGACATGTCAGATATG+TGG | - | chr1.1:46493555-46493574 | MS.gene47348:CDS | 45.0% | |
GTTGGATCTTCTTCTGATGC+AGG | - | chr1.1:46492574-46492593 | MS.gene47348:intron | 45.0% | |
TAGTGATGTTCCTGTGCCTA+TGG | - | chr1.1:46491514-46491533 | MS.gene47348:CDS | 45.0% | |
TGGGACCCTAACTTCAATGT+TGG | - | chr1.1:46493452-46493471 | MS.gene47348:CDS | 45.0% | |
! | GCTGTTGCTACTTCAAACTG+TGG | - | chr1.1:46493476-46493495 | MS.gene47348:CDS | 45.0% |
! | GTGAGGTACCAACCAAATTG+GGG | - | chr1.1:46493086-46493105 | MS.gene47348:intron | 45.0% |
! | TGAGGTACCAACCAAATTGG+GGG | - | chr1.1:46493087-46493106 | MS.gene47348:intron | 45.0% |
!! | TAGTAGTAGTTTGATGGCGG+TGG | + | chr1.1:46491256-46491275 | None:intergenic | 45.0% |
!! | TGATGGCGGTGGAAGAAAAT+GGG | + | chr1.1:46491245-46491264 | None:intergenic | 45.0% |
!! | TTGATGGCGGTGGAAGAAAA+TGG | + | chr1.1:46491246-46491265 | None:intergenic | 45.0% |
!!! | TTATTTTTTCTTTTTTTTTT+TGG | - | chr1.1:46491832-46491851 | MS.gene47348:CDS | 5.0% |
AGCGCGACTTAAGCAGAAGA+AGG | - | chr1.1:46492974-46492993 | MS.gene47348:intron | 50.0% | |
ATGGCGGTGGAAGAAAATGG+GGG | + | chr1.1:46491243-46491262 | None:intergenic | 50.0% | |
CATTCAGAGACTCCTACTGC+TGG | - | chr1.1:46492110-46492129 | MS.gene47348:CDS | 50.0% | |
CTTGCTGAGATTGAGACGTC+CGG | + | chr1.1:46492543-46492562 | None:intergenic | 50.0% | |
GAGACTCCTACTGCTGGAAT+TGG | - | chr1.1:46492116-46492135 | MS.gene47348:CDS | 50.0% | |
TGCAAACACTCCATAGGCAC+AGG | + | chr1.1:46491527-46491546 | None:intergenic | 50.0% | |
! | GAAGCATCAGCTATAGGTGG+TGG | - | chr1.1:46491485-46491504 | MS.gene47348:CDS | 50.0% |
! | GATGGCGGTGGAAGAAAATG+GGG | + | chr1.1:46491244-46491263 | None:intergenic | 50.0% |
! | TCAGCTATAGGTGGTGGTAC+TGG | - | chr1.1:46491491-46491510 | MS.gene47348:CDS | 50.0% |
!! | TGAAGAGCATTCAAAGGCGC+CGG | - | chr1.1:46492521-46492540 | MS.gene47348:intron | 50.0% |
AAAAAGGAGGGAAAGGGCGG+TGG | + | chr1.1:46491295-46491314 | None:intergenic | 55.0% | |
GGGGTGTGAATCGAAAGGTG+AGG | + | chr1.1:46491363-46491382 | None:intergenic | 55.0% | |
! | AGCAGGGAAATCTGGAGTCG+AGG | - | chr1.1:46492767-46492786 | MS.gene47348:intron | 55.0% |
! | GGAGAGGGGTGTGAATCGAA+AGG | + | chr1.1:46491368-46491387 | None:intergenic | 55.0% |
AAAGGGCGGTGGAAGGTGAG+GGG | + | chr1.1:46491284-46491303 | None:intergenic | 60.0% | |
GAAAGGGCGGTGGAAGGTGA+GGG | + | chr1.1:46491285-46491304 | None:intergenic | 60.0% | |
! | CGAATGACGGCTAGTCACGC+AGG | - | chr1.1:46492861-46492880 | MS.gene47348:intron | 60.0% |
AAGGGCGGTGGAAGGTGAGG+GGG | + | chr1.1:46491283-46491302 | None:intergenic | 65.0% | |
AGGAGGGAAAGGGCGGTGGA+AGG | + | chr1.1:46491291-46491310 | None:intergenic | 65.0% | |
GGAAAGGGCGGTGGAAGGTG+AGG | + | chr1.1:46491286-46491305 | None:intergenic | 65.0% | |
AGGGCGGTGGAAGGTGAGGG+GGG | + | chr1.1:46491282-46491301 | None:intergenic | 70.0% | |
GGGCGGTGGAAGGTGAGGGG+GGG | + | chr1.1:46491281-46491300 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 46491236 | 46493679 | 46491236 | ID=MS.gene47348 |
chr1.1 | mRNA | 46491236 | 46493679 | 46491236 | ID=MS.gene47348.t1;Parent=MS.gene47348 |
chr1.1 | exon | 46493173 | 46493679 | 46493173 | ID=MS.gene47348.t1.exon1;Parent=MS.gene47348.t1 |
chr1.1 | CDS | 46493173 | 46493679 | 46493173 | ID=cds.MS.gene47348.t1;Parent=MS.gene47348.t1 |
chr1.1 | exon | 46492320 | 46492467 | 46492320 | ID=MS.gene47348.t1.exon2;Parent=MS.gene47348.t1 |
chr1.1 | CDS | 46492320 | 46492467 | 46492320 | ID=cds.MS.gene47348.t1;Parent=MS.gene47348.t1 |
chr1.1 | exon | 46491236 | 46492143 | 46491236 | ID=MS.gene47348.t1.exon3;Parent=MS.gene47348.t1 |
chr1.1 | CDS | 46491236 | 46492143 | 46491236 | ID=cds.MS.gene47348.t1;Parent=MS.gene47348.t1 |
Gene Sequence |
Protein sequence |