Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47421.t1 | CAA77087.1 | 93.2 | 397 | 12 | 1 | 1 | 397 | 38 | 419 | 9.80E-205 | 722.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47421.t1 | P38094 | 29.3 | 417 | 258 | 12 | 4 | 395 | 5 | 409 | 1.0e-40 | 169.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47421.t1 | Q9STA5 | 93.2 | 397 | 12 | 1 | 1 | 397 | 42 | 423 | 7.1e-205 | 722.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051410 | MS.gene47421 | 0.88723 | 1.71E-72 | -1.69E-46 |
| MS.gene052560 | MS.gene47421 | 0.811907 | 5.53E-51 | -1.69E-46 |
| MS.gene055150 | MS.gene47421 | 0.808324 | 3.28E-50 | -1.69E-46 |
| MS.gene055339 | MS.gene47421 | 0.801007 | 1.10E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47421.t1 | MTR_1g062710 | 93.199 | 397 | 12 | 1 | 1 | 397 | 42 | 423 | 0.0 | 752 |
| MS.gene47421.t1 | MTR_1g062650 | 66.919 | 396 | 117 | 1 | 1 | 396 | 1 | 382 | 0.0 | 558 |
| MS.gene47421.t1 | MTR_1g062620 | 67.342 | 395 | 115 | 1 | 1 | 395 | 1 | 381 | 0.0 | 558 |
| MS.gene47421.t1 | MTR_1g062620 | 66.957 | 345 | 99 | 2 | 51 | 395 | 4 | 333 | 6.27e-164 | 479 |
| MS.gene47421.t1 | MTR_1g062620 | 66.892 | 296 | 83 | 2 | 100 | 395 | 1 | 281 | 4.42e-137 | 409 |
| MS.gene47421.t1 | MTR_1g062620 | 72.124 | 226 | 63 | 0 | 170 | 395 | 2 | 227 | 3.43e-112 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47421.t1 | AT3G53180 | 58.025 | 405 | 145 | 3 | 1 | 395 | 1 | 390 | 1.03e-161 | 476 |
Find 58 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGGTTTACCTTGATTT+TGG | 0.127703 | 1.4:+51532452 | MS.gene47421:intron |
| GAAGAGTACAGAAGAATTTC+AGG | 0.215372 | 1.4:+51530236 | MS.gene47421:CDS |
| ATAAGAATCTTACTTCATTT+AGG | 0.295647 | 1.4:-51530421 | None:intergenic |
| AAATGGATCTTCTTGGACTT+TGG | 0.295708 | 1.4:+51531123 | MS.gene47421:CDS |
| CAATACAAAGGTGACTAAAA+AGG | 0.331853 | 1.4:+51531354 | MS.gene47421:CDS |
| ATGCCATGCACACTAAGTTT+TGG | 0.352841 | 1.4:-51532485 | None:intergenic |
| CTTCGATGATGGAATACATT+TGG | 0.357620 | 1.4:+51530313 | MS.gene47421:CDS |
| TTCCCTGAACTCTTCTACTT+AGG | 0.358843 | 1.4:+51533061 | MS.gene47421:CDS |
| TTAAAGTTCAATATTCTAGT+TGG | 0.373928 | 1.4:+51531250 | MS.gene47421:CDS |
| CTCAAAGGAAGCATCATATC+TGG | 0.392897 | 1.4:+51532334 | MS.gene47421:CDS |
| CAACAGTAACAATCATGTTA+AGG | 0.428377 | 1.4:-51531276 | None:intergenic |
| AGCATGAATCAAAGAAAAGT+TGG | 0.434887 | 1.4:-51529976 | None:intergenic |
| ATACCTAAGTAGAAGAGTTC+AGG | 0.435758 | 1.4:-51533064 | None:intergenic |
| ATTAATAGCTTTGGGGATAG+AGG | 0.440483 | 1.4:+51532209 | MS.gene47421:intron |
| TATGATGCTTCCTTTGAGAA+TGG | 0.444647 | 1.4:-51532329 | None:intergenic |
| ACAATACTCTCTATCCTTCA+AGG | 0.444868 | 1.4:+51530034 | MS.gene47421:CDS |
| TTTGCAACTTCCACAGCCTC+CGG | 0.450044 | 1.4:-51533408 | None:intergenic |
| AGTCAACCGCAACTAAGTTA+TGG | 0.453520 | 1.4:-51529953 | None:intergenic |
| GTCAACCGCAACTAAGTTAT+GGG | 0.455053 | 1.4:-51529952 | None:intergenic |
| AGCTGAGGAGGGTCTGCAGC+AGG | 0.455514 | 1.4:+51531378 | MS.gene47421:CDS |
| TGACGGCGATCTCACTGTTC+CGG | 0.464854 | 1.4:+51533389 | MS.gene47421:CDS |
| GGTCTGCAGCAGGTGTTAGC+TGG | 0.478354 | 1.4:+51531388 | MS.gene47421:CDS |
| ACAAAATACTTGATACTGAA+TGG | 0.479708 | 1.4:+51530336 | MS.gene47421:CDS |
| ACTGTTGCTGATGAGATAGT+TGG | 0.482993 | 1.4:+51531292 | MS.gene47421:CDS |
| AGCATAGCAGCATACTACTT+TGG | 0.485785 | 1.4:+51531322 | MS.gene47421:CDS |
| TCTCACTGTTCCGGAGGCTG+TGG | 0.486736 | 1.4:+51533398 | MS.gene47421:CDS |
| AGAGATGTTGCTGAGTTGTA+TGG | 0.491934 | 1.4:+51530188 | MS.gene47421:CDS |
| GTATGGATGCGAGTCAACTT+TGG | 0.493792 | 1.4:+51530205 | MS.gene47421:CDS |
| AAAGTCCAAGAAGATCCATT+TGG | 0.508044 | 1.4:-51531121 | None:intergenic |
| TACCTAAGTAGAAGAGTTCA+GGG | 0.512127 | 1.4:-51533063 | None:intergenic |
| TACCCTGTGTGTAGCTGCAT+TGG | 0.518674 | 1.4:-51531574 | None:intergenic |
| TCTACTGTAATCTTCGATGA+TGG | 0.522350 | 1.4:+51530302 | MS.gene47421:CDS |
| CTGCGTGATTCATGCATTGA+CGG | 0.522814 | 1.4:+51533372 | MS.gene47421:CDS |
| TTATCTCCACAATGTTCTTG+AGG | 0.525804 | 1.4:+51532259 | MS.gene47421:CDS |
| TTCTATTATTAATAGCTTTG+GGG | 0.528035 | 1.4:+51532202 | MS.gene47421:intron |
| AGAACATTGTGGAGATAAAG+AGG | 0.534266 | 1.4:-51532254 | None:intergenic |
| AAAACTTAGTGTGCATGGCA+TGG | 0.551205 | 1.4:+51532487 | MS.gene47421:CDS |
| ATTCCAAAACTTAGTGTGCA+TGG | 0.555321 | 1.4:+51532482 | MS.gene47421:CDS |
| GAATAGCCAAGCCAAAATCA+AGG | 0.564793 | 1.4:-51532463 | None:intergenic |
| ACAATGTTCTTGAGGACAAG+AGG | 0.566181 | 1.4:+51532267 | MS.gene47421:CDS |
| TCTGGCTTCTCTGTACTCCC+AGG | 0.578459 | 1.4:+51532352 | MS.gene47421:CDS |
| TTCAGGGAATGCATAGGCAT+CGG | 0.581808 | 1.4:-51533047 | None:intergenic |
| AATGCATGAATCACGCAGAA+CGG | 0.585693 | 1.4:-51533367 | None:intergenic |
| GAAGAGTTCAGGGAATGCAT+AGG | 0.598920 | 1.4:-51533053 | None:intergenic |
| TACTTGATACTGAATGGCAC+AGG | 0.603719 | 1.4:+51530342 | MS.gene47421:CDS |
| GTAGCTGCATTGGCAAGTCA+TGG | 0.606447 | 1.4:-51531564 | None:intergenic |
| TACATCATATCCATTCTCAA+AGG | 0.609323 | 1.4:+51532319 | MS.gene47421:CDS |
| TTGCCAATGCAGCTACACAC+AGG | 0.609735 | 1.4:+51531571 | MS.gene47421:CDS |
| AGAGCAAGCTCCATTAAACA+AGG | 0.610108 | 1.4:+51532532 | MS.gene47421:CDS |
| CGGCGATCTCACTGTTCCGG+AGG | 0.613642 | 1.4:+51533392 | MS.gene47421:CDS |
| TAGCTGCATTGGCAAGTCAT+GGG | 0.614541 | 1.4:-51531563 | None:intergenic |
| GATTGAGGAGGTAGAACTTG+TGG | 0.621601 | 1.4:+51529920 | MS.gene47421:CDS |
| TGCCAATGCAGCTACACACA+GGG | 0.630545 | 1.4:+51531572 | MS.gene47421:CDS |
| TCATGCCCATAACTTAGTTG+CGG | 0.632976 | 1.4:+51529947 | MS.gene47421:CDS |
| TCTTGTCCTCAAGAACATTG+TGG | 0.638906 | 1.4:-51532265 | None:intergenic |
| GAGGAGGTAGAACTTGTGGA+TGG | 0.663179 | 1.4:+51529924 | MS.gene47421:CDS |
| CTCACAAGTCTAGCAACATG+AGG | 0.676804 | 1.4:-51530374 | None:intergenic |
| TGGACTAGACATCAATACAA+AGG | 0.678680 | 1.4:+51531342 | MS.gene47421:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATACAACTAAAAATT+TGG | + | chr1.4:51532563-51532582 | MS.gene47421:intron | 15.0% |
| !! | TCAAATAATAAATGACATAA+TGG | - | chr1.4:51532115-51532134 | None:intergenic | 15.0% |
| !! | TTAATTGAAATAATTTGAGT+TGG | + | chr1.4:51531772-51531791 | MS.gene47421:intron | 15.0% |
| !! | TTATTTCAATTAAATATAGC+TGG | - | chr1.4:51531765-51531784 | None:intergenic | 15.0% |
| !! | TTTCTATTATTAATAGCTTT+GGG | + | chr1.4:51532201-51532220 | MS.gene47421:intron | 15.0% |
| !!! | AAATATTGGTAAATTTTCAT+TGG | + | chr1.4:51530139-51530158 | MS.gene47421:intron | 15.0% |
| !!! | AATGTTTTGTTATTTCAAAA+TGG | + | chr1.4:51532912-51532931 | MS.gene47421:intron | 15.0% |
| !!! | ATTGGTTTTAATATGTTTAA+TGG | + | chr1.4:51531427-51531446 | MS.gene47421:intron | 15.0% |
| !!! | TAATTGAAATAATTTGAGTT+GGG | + | chr1.4:51531773-51531792 | MS.gene47421:intron | 15.0% |
| !!! | TCAATATAGTTTTGAAAATA+AGG | - | chr1.4:51533110-51533129 | None:intergenic | 15.0% |
| !! | ATAAGAATCTTACTTCATTT+AGG | - | chr1.4:51530424-51530443 | None:intergenic | 20.0% |
| !! | ATGAAGTGACAAAAATATTT+CGG | + | chr1.4:51532599-51532618 | MS.gene47421:intron | 20.0% |
| !! | CTACTTTCAAATATTACAAA+AGG | + | chr1.4:51533141-51533160 | MS.gene47421:intron | 20.0% |
| !! | CTATAATTCTGTACAAAATT+TGG | - | chr1.4:51530812-51530831 | None:intergenic | 20.0% |
| !! | CTTTCATTATTCAAAGTTAA+AGG | - | chr1.4:51532967-51532986 | None:intergenic | 20.0% |
| !! | CTTTCTATTATTAATAGCTT+TGG | + | chr1.4:51532200-51532219 | MS.gene47421:intron | 20.0% |
| !! | TAAATCTGTCACTAAAATTA+GGG | - | chr1.4:51532737-51532756 | None:intergenic | 20.0% |
| !! | TATTAAAATTCTGTTATGTG+TGG | - | chr1.4:51532943-51532962 | None:intergenic | 20.0% |
| !! | TCATTTATTATTTGATCACT+CGG | + | chr1.4:51532120-51532139 | MS.gene47421:intron | 20.0% |
| !! | TTAAAGTTCAATATTCTAGT+TGG | + | chr1.4:51531250-51531269 | MS.gene47421:CDS | 20.0% |
| !!! | AAGTCGTTTAAAATAATGTA+AGG | + | chr1.4:51532871-51532890 | MS.gene47421:intron | 20.0% |
| !!! | ACAATAATTCAATTGATTCA+AGG | - | chr1.4:51533182-51533201 | None:intergenic | 20.0% |
| !!! | ATAAATGACATAATGGATTT+TGG | - | chr1.4:51532108-51532127 | None:intergenic | 20.0% |
| !!! | ATCATGAAATTTGTTTTAAC+AGG | + | chr1.4:51533315-51533334 | MS.gene47421:intron | 20.0% |
| !!! | ATTGATTTTTGACCATTTTT+GGG | + | chr1.4:51531623-51531642 | MS.gene47421:intron | 20.0% |
| !!! | CACACACATATTAATTTTAA+AGG | - | chr1.4:51531681-51531700 | None:intergenic | 20.0% |
| !!! | CTAATTTATAAAGTGTTGAT+TGG | + | chr1.4:51531989-51532008 | MS.gene47421:intron | 20.0% |
| !!! | TATTGATTTTTGACCATTTT+TGG | + | chr1.4:51531622-51531641 | MS.gene47421:intron | 20.0% |
| !!! | TTCTATTATTAATAGCTTTG+GGG | + | chr1.4:51532202-51532221 | MS.gene47421:intron | 20.0% |
| !!! | TTTTTGAATACCTTGTTTAA+TGG | - | chr1.4:51532545-51532564 | None:intergenic | 20.0% |
| ! | AAGTAGTAATTTATTGGACA+TGG | + | chr1.4:51530908-51530927 | MS.gene47421:intron | 25.0% |
| ! | AATTCAACACATGAAAATTG+TGG | + | chr1.4:51530965-51530984 | MS.gene47421:intron | 25.0% |
| ! | ACAAAATACTTGATACTGAA+TGG | + | chr1.4:51530336-51530355 | MS.gene47421:CDS | 25.0% |
| ! | ATAAAAGCTTGTCATATAAG+TGG | + | chr1.4:51531841-51531860 | MS.gene47421:intron | 25.0% |
| ! | ATCTAAATCTATTGCTAACT+TGG | + | chr1.4:51532781-51532800 | MS.gene47421:intron | 25.0% |
| ! | ATTTAACATTCACTCTCTTA+TGG | + | chr1.4:51530623-51530642 | MS.gene47421:intron | 25.0% |
| ! | CAATTGTTTAACTATGGATT+TGG | - | chr1.4:51531001-51531020 | None:intergenic | 25.0% |
| ! | CTAAATCTGTCACTAAAATT+AGG | - | chr1.4:51532738-51532757 | None:intergenic | 25.0% |
| ! | GTTTAATGGTATTAAGAGTA+AGG | + | chr1.4:51531441-51531460 | MS.gene47421:intron | 25.0% |
| ! | TAGAAATCCACAGAAAATTA+TGG | - | chr1.4:51530938-51530957 | None:intergenic | 25.0% |
| ! | TCAAGCAAGTAGTAATTTAT+TGG | + | chr1.4:51530902-51530921 | MS.gene47421:intron | 25.0% |
| ! | TCATAAATCGATCATTAAAC+CGG | - | chr1.4:51532694-51532713 | None:intergenic | 25.0% |
| ! | TTATATTTAATGCTTCCTGA+AGG | + | chr1.4:51531093-51531112 | MS.gene47421:intron | 25.0% |
| ! | TTGTTCATAACACTCATTAT+CGG | - | chr1.4:51530585-51530604 | None:intergenic | 25.0% |
| ! | TTTAACATTCACTCTCTTAT+GGG | + | chr1.4:51530624-51530643 | MS.gene47421:intron | 25.0% |
| ! | TTTATAAATTAGAGTCCGTT+TGG | - | chr1.4:51531981-51532000 | None:intergenic | 25.0% |
| ! | TTTGAGCAATTGTTTAACTA+TGG | - | chr1.4:51531007-51531026 | None:intergenic | 25.0% |
| !! | TCTAAAGTAAAGTTTAAGGA+AGG | - | chr1.4:51532847-51532866 | None:intergenic | 25.0% |
| !!! | ATTTGTAGAGTTTTTTACCT+GGG | - | chr1.4:51532372-51532391 | None:intergenic | 25.0% |
| !!! | GAACTCTAAAGTAAAGTTTA+AGG | - | chr1.4:51532851-51532870 | None:intergenic | 25.0% |
| !!! | TAGAATGTTTTTTACCTTGA+AGG | - | chr1.4:51530051-51530070 | None:intergenic | 25.0% |
| !!! | TCACATTCTCTTTTAATTCA+TGG | + | chr1.4:51530444-51530463 | MS.gene47421:intron | 25.0% |
| !!! | TTTCATTGGTTATTTTGTGA+TGG | + | chr1.4:51530153-51530172 | MS.gene47421:intron | 25.0% |
| AAACCTGAAGGATAAAGATT+GGG | - | chr1.4:51532442-51532461 | None:intergenic | 30.0% | |
| AATTTACTTCGATGAAAAGC+CGG | + | chr1.4:51532625-51532644 | MS.gene47421:intron | 30.0% | |
| ACCAGTTTCATCCAATAAAA+GGG | + | chr1.4:51530708-51530727 | MS.gene47421:intron | 30.0% | |
| AGCATGAATCAAAGAAAAGT+TGG | - | chr1.4:51529979-51529998 | None:intergenic | 30.0% | |
| ATTAGGGAGTAATGATGTAT+AGG | - | chr1.4:51532721-51532740 | None:intergenic | 30.0% | |
| ATTGTGTTTGGTATCCATAT+CGG | - | chr1.4:51530547-51530566 | None:intergenic | 30.0% | |
| ATTGTTGTCATAAGCTATCT+TGG | + | chr1.4:51531894-51531913 | MS.gene47421:intron | 30.0% | |
| CAACAGTAACAATCATGTTA+AGG | - | chr1.4:51531279-51531298 | None:intergenic | 30.0% | |
| CAATACAAAGGTGACTAAAA+AGG | + | chr1.4:51531354-51531373 | MS.gene47421:CDS | 30.0% | |
| CTCAAATATGTCAATCCAAA+CGG | + | chr1.4:51531963-51531982 | MS.gene47421:intron | 30.0% | |
| CTGGTAAATTTACCCAAAAA+TGG | - | chr1.4:51531638-51531657 | None:intergenic | 30.0% | |
| GTACAAAATTTGGTTGTACA+AGG | - | chr1.4:51530802-51530821 | None:intergenic | 30.0% | |
| TAAACCTGAAGGATAAAGAT+TGG | - | chr1.4:51532443-51532462 | None:intergenic | 30.0% | |
| TACATCATATCCATTCTCAA+AGG | + | chr1.4:51532319-51532338 | MS.gene47421:CDS | 30.0% | |
| TACCAGTTTCATCCAATAAA+AGG | + | chr1.4:51530707-51530726 | MS.gene47421:intron | 30.0% | |
| TGTATTGAGAAAAACGATTG+AGG | + | chr1.4:51529905-51529924 | MS.gene47421:CDS | 30.0% | |
| TTAGCGACTTATTTAGAAAC+CGG | - | chr1.4:51532647-51532666 | None:intergenic | 30.0% | |
| TTTAACTATGGATTTGGACA+CGG | - | chr1.4:51530995-51531014 | None:intergenic | 30.0% | |
| ! | CTACATCTTTTTGCTAAGTT+TGG | + | chr1.4:51531528-51531547 | MS.gene47421:CDS | 30.0% |
| ! | GTAGAGAGAGAATTTTATGA+AGG | - | chr1.4:51531190-51531209 | None:intergenic | 30.0% |
| ! | TAAAGTATTTCTCTCCAAGT+TGG | + | chr1.4:51531156-51531175 | MS.gene47421:intron | 30.0% |
| ! | TGGTTAACCATAATTTTCTG+TGG | + | chr1.4:51530928-51530947 | MS.gene47421:intron | 30.0% |
| !! | CATTTAGGATATTTTCAGCT+AGG | - | chr1.4:51530409-51530428 | None:intergenic | 30.0% |
| !! | TACCAGAAATGCTTGTTATA+GGG | + | chr1.4:51531652-51531671 | MS.gene47421:intron | 30.0% |
| !! | TTACCAGAAATGCTTGTTAT+AGG | + | chr1.4:51531651-51531670 | MS.gene47421:intron | 30.0% |
| !!! | GATTTGTAGAGTTTTTTACC+TGG | - | chr1.4:51532373-51532392 | None:intergenic | 30.0% |
| AAAGAAAACTTTGTTCCAGC+AGG | - | chr1.4:51530088-51530107 | None:intergenic | 35.0% | |
| AAAGTAGATCCCACATAAAG+TGG | + | chr1.4:51530675-51530694 | MS.gene47421:intron | 35.0% | |
| AAAGTCCAAGAAGATCCATT+TGG | - | chr1.4:51531124-51531143 | None:intergenic | 35.0% | |
| AAATGGATCTTCTTGGACTT+TGG | + | chr1.4:51531123-51531142 | MS.gene47421:CDS | 35.0% | |
| AAGAAAACTTTGTTCCAGCA+GGG | - | chr1.4:51530087-51530106 | None:intergenic | 35.0% | |
| AAGAGTAAACTTTGCATTGC+AGG | + | chr1.4:51533012-51533031 | MS.gene47421:intron | 35.0% | |
| ACAATACTCTCTATCCTTCA+AGG | + | chr1.4:51530034-51530053 | MS.gene47421:CDS | 35.0% | |
| AGAACATTGTGGAGATAAAG+AGG | - | chr1.4:51532257-51532276 | None:intergenic | 35.0% | |
| ATACCTAAGTAGAAGAGTTC+AGG | - | chr1.4:51533067-51533086 | None:intergenic | 35.0% | |
| ATATTTCCTTGCAAGTTAGC+TGG | - | chr1.4:51530125-51530144 | None:intergenic | 35.0% | |
| ATCCCTATAACAAGCATTTC+TGG | - | chr1.4:51531657-51531676 | None:intergenic | 35.0% | |
| ATCGTGTTTGGTATCCATAT+TGG | - | chr1.4:51530488-51530507 | None:intergenic | 35.0% | |
| ATTCCAAAACTTAGTGTGCA+TGG | + | chr1.4:51532482-51532501 | MS.gene47421:CDS | 35.0% | |
| ATTGAGAAAAACGATTGAGG+AGG | + | chr1.4:51529908-51529927 | MS.gene47421:CDS | 35.0% | |
| CAAAATCAAGGTAAACCTGA+AGG | - | chr1.4:51532454-51532473 | None:intergenic | 35.0% | |
| GGTGAGTAGAGAATGAAAAT+TGG | + | chr1.4:51531409-51531428 | MS.gene47421:intron | 35.0% | |
| GGTGCTTCATAGATACATAT+CGG | - | chr1.4:51530526-51530545 | None:intergenic | 35.0% | |
| GTTTCATCCAATAAAAGGGT+CGG | + | chr1.4:51530712-51530731 | MS.gene47421:intron | 35.0% | |
| TAACCCAATCTTTATCCTTC+AGG | + | chr1.4:51532436-51532455 | MS.gene47421:intron | 35.0% | |
| TACCTAAGTAGAAGAGTTCA+GGG | - | chr1.4:51533066-51533085 | None:intergenic | 35.0% | |
| TCTACTGTAATCTTCGATGA+TGG | + | chr1.4:51530302-51530321 | MS.gene47421:CDS | 35.0% | |
| TGAAGGATATGATTCCAACT+TGG | - | chr1.4:51531173-51531192 | None:intergenic | 35.0% | |
| TTATCTCCACAATGTTCTTG+AGG | + | chr1.4:51532259-51532278 | MS.gene47421:CDS | 35.0% | |
| TTATGGGATGAAACACATGT+GGG | + | chr1.4:51530640-51530659 | MS.gene47421:intron | 35.0% | |
| ! | ACCCTTTTATTGGATGAAAC+TGG | - | chr1.4:51530712-51530731 | None:intergenic | 35.0% |
| ! | CTTGGTAGCAAACAAAAATC+TGG | + | chr1.4:51531501-51531520 | MS.gene47421:CDS | 35.0% |
| ! | GAAGAGTACAGAAGAATTTC+AGG | + | chr1.4:51530236-51530255 | MS.gene47421:CDS | 35.0% |
| ! | GCTAACTTGCAAGGAAATAT+TGG | + | chr1.4:51530125-51530144 | MS.gene47421:intron | 35.0% |
| ! | GTATCTATGAAGCACCAATA+TGG | + | chr1.4:51530471-51530490 | MS.gene47421:intron | 35.0% |
| ! | TATGATGCTTCCTTTGAGAA+TGG | - | chr1.4:51532332-51532351 | None:intergenic | 35.0% |
| ! | TCGCGAAAGTTGTCTAATTT+TGG | - | chr1.4:51530858-51530877 | None:intergenic | 35.0% |
| ! | TGGACTAGACATCAATACAA+AGG | + | chr1.4:51531342-51531361 | MS.gene47421:CDS | 35.0% |
| ! | TTTTGCCAAATGGATCTTCT+TGG | + | chr1.4:51531116-51531135 | MS.gene47421:CDS | 35.0% |
| !! | ATTAATAGCTTTGGGGATAG+AGG | + | chr1.4:51532209-51532228 | MS.gene47421:intron | 35.0% |
| !! | CTTCAGGTTTACCTTGATTT+TGG | + | chr1.4:51532452-51532471 | MS.gene47421:intron | 35.0% |
| !! | CTTCGATGATGGAATACATT+TGG | + | chr1.4:51530313-51530332 | MS.gene47421:CDS | 35.0% |
| !! | TTTTTGTTTGCTACCAAGAC+AGG | - | chr1.4:51531499-51531518 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTTAAATCCCTGC+TGG | + | chr1.4:51530070-51530089 | MS.gene47421:intron | 35.0% |
| !!! | CATGCTTTTTCTTTAGCACA+TGG | + | chr1.4:51529993-51530012 | MS.gene47421:CDS | 35.0% |
| !!! | TGGGATCTACTTTTAAAGCT+TGG | - | chr1.4:51530668-51530687 | None:intergenic | 35.0% |
| AAAACTTAGTGTGCATGGCA+TGG | + | chr1.4:51532487-51532506 | MS.gene47421:CDS | 40.0% | |
| AAAAGGGTCGGTAGAACTAA+TGG | + | chr1.4:51530724-51530743 | MS.gene47421:intron | 40.0% | |
| AAAGGGTCGGTAGAACTAAT+GGG | + | chr1.4:51530725-51530744 | MS.gene47421:intron | 40.0% | |
| AACCGGTCACAAACTCATTT+AGG | - | chr1.4:51532677-51532696 | None:intergenic | 40.0% | |
| AATGCATGAATCACGCAGAA+CGG | - | chr1.4:51533370-51533389 | None:intergenic | 40.0% | |
| ACAATGTTCTTGAGGACAAG+AGG | + | chr1.4:51532267-51532286 | MS.gene47421:CDS | 40.0% | |
| ACCGGTCACAAACTCATTTA+GGG | - | chr1.4:51532676-51532695 | None:intergenic | 40.0% | |
| ACTAAAAAGGAAGCTGAGGA+GGG | + | chr1.4:51531367-51531386 | MS.gene47421:CDS | 40.0% | |
| ACTGTTGCTGATGAGATAGT+TGG | + | chr1.4:51531292-51531311 | MS.gene47421:CDS | 40.0% | |
| AGAGATGTTGCTGAGTTGTA+TGG | + | chr1.4:51530188-51530207 | MS.gene47421:CDS | 40.0% | |
| AGAGCAAGCTCCATTAAACA+AGG | + | chr1.4:51532532-51532551 | MS.gene47421:CDS | 40.0% | |
| AGCATAGCAGCATACTACTT+TGG | + | chr1.4:51531322-51531341 | MS.gene47421:CDS | 40.0% | |
| AGTCAACCGCAACTAAGTTA+TGG | - | chr1.4:51529956-51529975 | None:intergenic | 40.0% | |
| ATCCATTTGGCAAAACCTTC+AGG | - | chr1.4:51531111-51531130 | None:intergenic | 40.0% | |
| CTTATGGGATGAAACACATG+TGG | + | chr1.4:51530639-51530658 | MS.gene47421:intron | 40.0% | |
| GAATAGCCAAGCCAAAATCA+AGG | - | chr1.4:51532466-51532485 | None:intergenic | 40.0% | |
| GTCAACCGCAACTAAGTTAT+GGG | - | chr1.4:51529955-51529974 | None:intergenic | 40.0% | |
| TACTTGATACTGAATGGCAC+AGG | + | chr1.4:51530342-51530361 | MS.gene47421:CDS | 40.0% | |
| TCATGCCCATAACTTAGTTG+CGG | + | chr1.4:51529947-51529966 | MS.gene47421:CDS | 40.0% | |
| TCCCTAAATGAGTTTGTGAC+CGG | + | chr1.4:51532672-51532691 | MS.gene47421:intron | 40.0% | |
| TCTTGTCCTCAAGAACATTG+TGG | - | chr1.4:51532268-51532287 | None:intergenic | 40.0% | |
| TTCCCTGAACTCTTCTACTT+AGG | + | chr1.4:51533061-51533080 | MS.gene47421:CDS | 40.0% | |
| ! | AGTTCTACCGACCCTTTTAT+TGG | - | chr1.4:51530722-51530741 | None:intergenic | 40.0% |
| ! | ATGCCATGCACACTAAGTTT+TGG | - | chr1.4:51532488-51532507 | None:intergenic | 40.0% |
| ! | CGACACATGAGTATTGTGTT+TGG | - | chr1.4:51530559-51530578 | None:intergenic | 40.0% |
| ! | TCAATACCAGCTAACTTGCA+AGG | + | chr1.4:51530116-51530135 | MS.gene47421:intron | 40.0% |
| ! | TTCCTGAAGGTTTTGCCAAA+TGG | + | chr1.4:51531106-51531125 | MS.gene47421:intron | 40.0% |
| !! | CTCAAAGGAAGCATCATATC+TGG | + | chr1.4:51532334-51532353 | MS.gene47421:CDS | 40.0% |
| !! | GTATCTATGAAGCACCGATA+TGG | + | chr1.4:51530530-51530549 | MS.gene47421:intron | 40.0% |
| !! | TTCAGTTTTCAAGCCTGTCT+TGG | + | chr1.4:51531483-51531502 | MS.gene47421:intron | 40.0% |
| !!! | GGTTTACCTTGATTTTGGCT+TGG | + | chr1.4:51532457-51532476 | MS.gene47421:intron | 40.0% |
| CTCACAAGTCTAGCAACATG+AGG | - | chr1.4:51530377-51530396 | None:intergenic | 45.0% | |
| CTGCGTGATTCATGCATTGA+CGG | + | chr1.4:51533372-51533391 | MS.gene47421:CDS | 45.0% | |
| GAAGAGTTCAGGGAATGCAT+AGG | - | chr1.4:51533056-51533075 | None:intergenic | 45.0% | |
| GACTAAAAAGGAAGCTGAGG+AGG | + | chr1.4:51531366-51531385 | MS.gene47421:CDS | 45.0% | |
| GATTGAGGAGGTAGAACTTG+TGG | + | chr1.4:51529920-51529939 | MS.gene47421:CDS | 45.0% | |
| GGTGACTAAAAAGGAAGCTG+AGG | + | chr1.4:51531363-51531382 | MS.gene47421:CDS | 45.0% | |
| GTATGGATGCGAGTCAACTT+TGG | + | chr1.4:51530205-51530224 | MS.gene47421:CDS | 45.0% | |
| GTCGGTAGAACTAATGGGAT+TGG | + | chr1.4:51530730-51530749 | MS.gene47421:intron | 45.0% | |
| TTCAGGGAATGCATAGGCAT+CGG | - | chr1.4:51533050-51533069 | None:intergenic | 45.0% | |
| ! | ATGAGTCTCGCCACTTTATG+TGG | - | chr1.4:51530688-51530707 | None:intergenic | 45.0% |
| ! | CGACACATGAGTATCGTGTT+TGG | - | chr1.4:51530500-51530519 | None:intergenic | 45.0% |
| ! | TAGCTGCATTGGCAAGTCAT+GGG | - | chr1.4:51531566-51531585 | None:intergenic | 45.0% |
| ! | TGAGTCTCGCCACTTTATGT+GGG | - | chr1.4:51530687-51530706 | None:intergenic | 45.0% |
| GAGGAGGTAGAACTTGTGGA+TGG | + | chr1.4:51529924-51529943 | MS.gene47421:CDS | 50.0% | |
| TACCCTGTGTGTAGCTGCAT+TGG | - | chr1.4:51531577-51531596 | None:intergenic | 50.0% | |
| TGCAGCTACACACAGGGTAA+TGG | + | chr1.4:51531578-51531597 | MS.gene47421:intron | 50.0% | |
| TGCCAATGCAGCTACACACA+GGG | + | chr1.4:51531572-51531591 | MS.gene47421:CDS | 50.0% | |
| TTGCCAATGCAGCTACACAC+AGG | + | chr1.4:51531571-51531590 | MS.gene47421:CDS | 50.0% | |
| TTTGCAACTTCCACAGCCTC+CGG | - | chr1.4:51533411-51533430 | None:intergenic | 50.0% | |
| ! | GTAGCTGCATTGGCAAGTCA+TGG | - | chr1.4:51531567-51531586 | None:intergenic | 50.0% |
| TGACGGCGATCTCACTGTTC+CGG | + | chr1.4:51533389-51533408 | MS.gene47421:CDS | 55.0% | |
| ! | TCTGGCTTCTCTGTACTCCC+AGG | + | chr1.4:51532352-51532371 | MS.gene47421:CDS | 55.0% |
| GGTCTGCAGCAGGTGTTAGC+TGG | + | chr1.4:51531388-51531407 | MS.gene47421:CDS | 60.0% | |
| TCTCACTGTTCCGGAGGCTG+TGG | + | chr1.4:51533398-51533417 | MS.gene47421:CDS | 60.0% | |
| AGCTGAGGAGGGTCTGCAGC+AGG | + | chr1.4:51531378-51531397 | MS.gene47421:CDS | 65.0% | |
| CGGCGATCTCACTGTTCCGG+AGG | + | chr1.4:51533392-51533411 | MS.gene47421:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 51529894 | 51533479 | 51529894 | ID=MS.gene47421 |
| chr1.4 | mRNA | 51529894 | 51533479 | 51529894 | ID=MS.gene47421.t1;Parent=MS.gene47421 |
| chr1.4 | exon | 51529894 | 51530055 | 51529894 | ID=MS.gene47421.t1.exon1;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51529894 | 51530055 | 51529894 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51530179 | 51530430 | 51530179 | ID=MS.gene47421.t1.exon2;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51530179 | 51530430 | 51530179 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51531115 | 51531173 | 51531115 | ID=MS.gene47421.t1.exon3;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51531115 | 51531173 | 51531115 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51531240 | 51531409 | 51531240 | ID=MS.gene47421.t1.exon4;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51531240 | 51531409 | 51531240 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51531488 | 51531593 | 51531488 | ID=MS.gene47421.t1.exon5;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51531488 | 51531593 | 51531488 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51532217 | 51532373 | 51532217 | ID=MS.gene47421.t1.exon6;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51532217 | 51532373 | 51532217 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51532458 | 51532553 | 51532458 | ID=MS.gene47421.t1.exon7;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51532458 | 51532553 | 51532458 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51533034 | 51533082 | 51533034 | ID=MS.gene47421.t1.exon8;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51533034 | 51533082 | 51533034 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| chr1.4 | exon | 51533337 | 51533479 | 51533337 | ID=MS.gene47421.t1.exon9;Parent=MS.gene47421.t1 |
| chr1.4 | CDS | 51533337 | 51533479 | 51533337 | ID=cds.MS.gene47421.t1;Parent=MS.gene47421.t1 |
| Gene Sequence |
| Protein sequence |
