Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47520.t1 | AES90270.2 | 93.6 | 472 | 14 | 1 | 1 | 472 | 29 | 484 | 3.50E-233 | 817.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47520.t1 | G7JNM2 | 93.6 | 472 | 14 | 1 | 1 | 472 | 29 | 484 | 2.5e-233 | 817.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052169 | MS.gene47520 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene47520 | 0.825228 | 5.26E-54 | -1.69E-46 |
| MS.gene056708 | MS.gene47520 | 0.807688 | 4.47E-50 | -1.69E-46 |
| MS.gene057669 | MS.gene47520 | 0.803039 | 4.22E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47520.t1 | MTR_4g087360 | 94.280 | 472 | 11 | 1 | 1 | 472 | 29 | 484 | 0.0 | 915 |
| MS.gene47520.t1 | MTR_4g087360 | 94.280 | 472 | 11 | 1 | 1 | 472 | 1 | 456 | 0.0 | 915 |
| MS.gene47520.t1 | MTR_4g087350 | 57.586 | 290 | 104 | 5 | 1 | 288 | 1 | 273 | 8.47e-90 | 275 |
| MS.gene47520.t1 | MTR_8g006760 | 33.444 | 302 | 173 | 7 | 25 | 310 | 53 | 342 | 9.09e-41 | 150 |
| MS.gene47520.t1 | MTR_7g007590 | 27.607 | 326 | 166 | 11 | 14 | 331 | 46 | 309 | 9.43e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47520.t1 | AT3G59670 | 41.478 | 487 | 221 | 19 | 25 | 472 | 56 | 517 | 3.14e-83 | 266 |
| MS.gene47520.t1 | AT4G37440 | 34.875 | 281 | 164 | 7 | 24 | 301 | 68 | 332 | 8.45e-38 | 143 |
| MS.gene47520.t1 | AT4G37440 | 34.875 | 281 | 164 | 7 | 24 | 301 | 68 | 332 | 9.12e-38 | 143 |
| MS.gene47520.t1 | AT4G37440 | 34.875 | 281 | 164 | 7 | 24 | 301 | 68 | 332 | 1.71e-37 | 143 |
| MS.gene47520.t1 | AT3G50040 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 4.25e-21 | 95.1 |
| MS.gene47520.t1 | AT3G50040 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.74e-21 | 95.1 |
| MS.gene47520.t1 | AT3G50040 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.74e-21 | 95.1 |
| MS.gene47520.t1 | AT3G50040 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.74e-21 | 95.1 |
Find 97 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACCTCGAAACATTTC+TGG | 0.246323 | 4.3:+25812862 | None:intergenic |
| CTCTGATGTGGCGTCTAAAA+TGG | 0.252327 | 4.3:-25813745 | MS.gene47520:CDS |
| GCAAGCCCTCATGATACTTT+TGG | 0.286985 | 4.3:-25814553 | MS.gene47520:CDS |
| TGAACTTCAGGAGGTGAAAA+TGG | 0.307775 | 4.3:-25812049 | MS.gene47520:CDS |
| AGTCTTATTCACTGATTATC+AGG | 0.308225 | 4.3:+25811811 | None:intergenic |
| GACAGCTGTGTTTCAAGCTT+TGG | 0.311111 | 4.3:-25812668 | MS.gene47520:CDS |
| TTTCACCTCCTGAAGCTTCT+GGG | 0.320720 | 4.3:+25812005 | None:intergenic |
| CTGTACTGGTGACTTGAAAA+TGG | 0.334286 | 4.3:+25813590 | None:intergenic |
| GTCTGATGCTGATGGCTCTT+TGG | 0.338203 | 4.3:-25813336 | MS.gene47520:CDS |
| TGTTCTGATGCATGAACTTC+AGG | 0.338964 | 4.3:-25812061 | MS.gene47520:CDS |
| AATTTGCTTGAGTCTTATTT+CGG | 0.351566 | 4.3:+25813721 | None:intergenic |
| TCTGTTCTTGATGAACAAAT+TGG | 0.353691 | 4.3:-25814781 | MS.gene47520:CDS |
| CAATCCCACCCAGAAGCTTC+AGG | 0.360739 | 4.3:-25812013 | MS.gene47520:CDS |
| CTCAATTATATCAGGAATAC+TGG | 0.361289 | 4.3:+25812637 | None:intergenic |
| CCATTCCCAGCAGAATTTGT+AGG | 0.379539 | 4.3:+25812779 | None:intergenic |
| TGAGAGCACTGTTGGTTTGT+TGG | 0.381844 | 4.3:-25812618 | MS.gene47520:CDS |
| GGAATTAAAGTCACCTTGTT+CGG | 0.384584 | 4.3:+25814521 | None:intergenic |
| GGGGAGCGCAAAGCTGGTTC+AGG | 0.393635 | 4.3:-25811862 | MS.gene47520:CDS |
| TCGGCCTTGGTTGCCGACTC+TGG | 0.398219 | 4.3:-25812572 | MS.gene47520:CDS |
| TCAGAGTTCTTTGGTGAGAA+TGG | 0.403213 | 4.3:-25814580 | MS.gene47520:CDS |
| CTCGAATATTCAGTTGCATC+AGG | 0.409498 | 4.3:+25814667 | None:intergenic |
| GCACATCACCATGAAGAATA+AGG | 0.413362 | 4.3:+25812822 | None:intergenic |
| ACCTCCTGAAGCTTCTGGGT+GGG | 0.414016 | 4.3:+25812009 | None:intergenic |
| TGTCACCCTCCAATCGGCCT+TGG | 0.422704 | 4.3:-25812585 | MS.gene47520:CDS |
| ACAGTGCTCTCAATTATATC+AGG | 0.430041 | 4.3:+25812629 | None:intergenic |
| AGAAGCTTCAGGAGGTGAAA+AGG | 0.432992 | 4.3:-25812002 | MS.gene47520:CDS |
| GAAGTGGATTCAGAGTTCTT+TGG | 0.433390 | 4.3:-25814589 | MS.gene47520:CDS |
| AGAGGAAGTTGACAGATCAT+TGG | 0.438955 | 4.3:-25813784 | MS.gene47520:CDS |
| CACTGATTATCAGGTTCCCC+AGG | 0.452914 | 4.3:+25811820 | None:intergenic |
| CAAAGTCCTACAAATTCTGC+TGG | 0.460562 | 4.3:-25812785 | MS.gene47520:CDS |
| CCTACAAATTCTGCTGGGAA+TGG | 0.476255 | 4.3:-25812779 | MS.gene47520:CDS |
| AAGCGTGGGGAGCGCAAAGC+TGG | 0.481385 | 4.3:-25811868 | MS.gene47520:CDS |
| GATATAATTGAGAGCACTGT+TGG | 0.485330 | 4.3:-25812626 | MS.gene47520:CDS |
| CTCCACCTTAACGACGGGAT+TGG | 0.492548 | 4.3:+25814804 | None:intergenic |
| CATGTCCAATCCCGTCGTTA+AGG | 0.497756 | 4.3:-25814809 | MS.gene47520:CDS |
| ACGGCATCTGTTGGAGTTGG+AGG | 0.501116 | 4.3:-25812752 | MS.gene47520:CDS |
| AATGGATACACGGCATCTGT+TGG | 0.502595 | 4.3:-25812761 | MS.gene47520:CDS |
| GAAGCTTCAGGAGGTGAAAA+GGG | 0.504312 | 4.3:-25812001 | MS.gene47520:CDS |
| AAGCTTGAAACACAGCTGTC+AGG | 0.505459 | 4.3:+25812671 | None:intergenic |
| ACATTGAAAATCTACAATGT+AGG | 0.506632 | 4.3:-25812922 | MS.gene47520:CDS |
| TCACGTCCAGAAATGTTTCG+AGG | 0.507311 | 4.3:-25812868 | MS.gene47520:CDS |
| GGTTGGAACATGAAGTCCCC+TGG | 0.508821 | 4.3:-25811838 | MS.gene47520:CDS |
| ATCTGACATGAGAATAGAAA+CGG | 0.514060 | 4.3:+25811957 | None:intergenic |
| AGTCGGCAACCAAGGCCGAT+TGG | 0.521202 | 4.3:+25812576 | None:intergenic |
| TCAGGAGGTGAAAAGGGAAG+TGG | 0.522015 | 4.3:-25811995 | MS.gene47520:CDS |
| CACCTCCTGAAGCTTCTGGG+TGG | 0.522706 | 4.3:+25812008 | None:intergenic |
| GCAAAGCTGGTTCAGGTGGT+TGG | 0.527885 | 4.3:-25811855 | MS.gene47520:CDS |
| CATTGAAAATCTACAATGTA+GGG | 0.528238 | 4.3:-25812921 | MS.gene47520:CDS |
| AGTCACCTTGTTCGGAACTC+AGG | 0.528629 | 4.3:+25814529 | None:intergenic |
| AAGATCAAGTGATGCTGAAG+TGG | 0.528838 | 4.3:-25814605 | MS.gene47520:CDS |
| TGCTGATGTCACCCTCCAAT+CGG | 0.529019 | 4.3:-25812591 | MS.gene47520:CDS |
| TACACGGCATCTGTTGGAGT+TGG | 0.531038 | 4.3:-25812755 | MS.gene47520:CDS |
| AAGTCACCAGTACAGAAGTA+AGG | 0.532646 | 4.3:-25813582 | MS.gene47520:CDS |
| GTGAAAAGGGAAGTGGAAGA+AGG | 0.534943 | 4.3:-25811988 | MS.gene47520:CDS |
| CGGCAACCAAGGCCGATTGG+AGG | 0.540629 | 4.3:+25812579 | None:intergenic |
| GGCAACCAAGGCCGATTGGA+GGG | 0.541238 | 4.3:+25812580 | None:intergenic |
| TGGACGAACAAGGGTGATGT+TGG | 0.545407 | 4.3:-25814709 | MS.gene47520:CDS |
| TCAGGAGGTGAAAATGGAAG+TGG | 0.551172 | 4.3:-25812043 | MS.gene47520:CDS |
| GTGTCAGTGCATTTGAGCAA+AGG | 0.557356 | 4.3:+25812974 | None:intergenic |
| GTCCAATCCCGTCGTTAAGG+TGG | 0.558790 | 4.3:-25814806 | MS.gene47520:CDS |
| GGAAGTTGACAGATCATTGG+AGG | 0.560199 | 4.3:-25813781 | MS.gene47520:CDS |
| ACAGACTCCACCTTAACGAC+GGG | 0.568340 | 4.3:+25814799 | None:intergenic |
| GTTGGAACATGAAGTCCCCT+GGG | 0.571232 | 4.3:-25811837 | MS.gene47520:CDS |
| TTCACCAGAGTCGGCAACCA+AGG | 0.581301 | 4.3:+25812568 | None:intergenic |
| GAGCGCAAAGCTGGTTCAGG+TGG | 0.583476 | 4.3:-25811859 | MS.gene47520:CDS |
| ACTCACATGTTCACCAGAGT+CGG | 0.590003 | 4.3:+25812559 | None:intergenic |
| GTATGACAAGGTAAAGCATA+CGG | 0.590399 | 4.3:-25813660 | MS.gene47520:CDS |
| ATCAGAGTCTGTATCAGCAA+AGG | 0.596262 | 4.3:+25814642 | None:intergenic |
| TTCTGCTGGGAATGGATACA+CGG | 0.600834 | 4.3:-25812771 | MS.gene47520:CDS |
| GTTCTGAAGGAGCAGCTCAA+AGG | 0.601866 | 4.3:+25812943 | None:intergenic |
| AATAAGAAGTCTGATGCTGA+TGG | 0.604157 | 4.3:-25813344 | MS.gene47520:CDS |
| TCGAATATTCAGTTGCATCA+GGG | 0.605831 | 4.3:+25814668 | None:intergenic |
| TATTGTGAGTTGGACGAACA+AGG | 0.606643 | 4.3:-25814719 | MS.gene47520:CDS |
| GTGTGAATAAAAGAAAGCGT+GGG | 0.607422 | 4.3:-25811882 | MS.gene47520:CDS |
| TTGGTCCTGAGTTCCGAACA+AGG | 0.611859 | 4.3:-25814534 | MS.gene47520:intron |
| CAGATGTTGATATTGTGAGT+TGG | 0.612336 | 4.3:-25814729 | MS.gene47520:CDS |
| ACTGATTATCAGGTTCCCCA+GGG | 0.614893 | 4.3:+25811821 | None:intergenic |
| AGGGTCCGCACACTGAAAAG+TGG | 0.615591 | 4.3:-25812902 | MS.gene47520:CDS |
| AAAGTCCTACAAATTCTGCT+GGG | 0.619351 | 4.3:-25812784 | MS.gene47520:CDS |
| ATTTCATCCGACCTCTGATG+TGG | 0.624861 | 4.3:-25813757 | MS.gene47520:CDS |
| TGTGTGAATAAAAGAAAGCG+TGG | 0.625451 | 4.3:-25811883 | MS.gene47520:CDS |
| AACAGACTCCACCTTAACGA+CGG | 0.636006 | 4.3:+25814798 | None:intergenic |
| TCAGGACCAAAAGTATCATG+AGG | 0.639160 | 4.3:+25814547 | None:intergenic |
| TTAGACGCCACATCAGAGGT+CGG | 0.649299 | 4.3:+25813750 | None:intergenic |
| AAGACGACGAAAGAAAGTTG+AGG | 0.656367 | 4.3:-25813549 | MS.gene47520:CDS |
| GTTCTTTGGTGAGAATGGCG+CGG | 0.661080 | 4.3:-25814575 | MS.gene47520:CDS |
| CAGGACCAAAAGTATCATGA+GGG | 0.684798 | 4.3:+25814548 | None:intergenic |
| AAAGAAAGTTGAGGATACAA+CGG | 0.687206 | 4.3:-25813540 | MS.gene47520:CDS |
| CTGGTGACTTGAAAATGGCA+AGG | 0.692316 | 4.3:+25813595 | None:intergenic |
| TCCCACCCAGAAGCTTCAGG+AGG | 0.699328 | 4.3:-25812010 | MS.gene47520:CDS |
| TGTGAATAAAAGAAAGCGTG+GGG | 0.699887 | 4.3:-25811881 | MS.gene47520:CDS |
| CTGATTATCAGGTTCCCCAG+GGG | 0.702960 | 4.3:+25811822 | None:intergenic |
| ATTGTGAGTTGGACGAACAA+GGG | 0.703347 | 4.3:-25814718 | MS.gene47520:CDS |
| AGAACTTGCAGAGTATGACA+AGG | 0.715284 | 4.3:-25813672 | MS.gene47520:CDS |
| TCTGATGCATGAACTTCAGG+AGG | 0.750934 | 4.3:-25812058 | MS.gene47520:CDS |
| TGACAAGGTAAAGCATACGG+CGG | 0.760192 | 4.3:-25813657 | MS.gene47520:CDS |
| TTGGAACATGAAGTCCCCTG+GGG | 0.780983 | 4.3:-25811836 | MS.gene47520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAATATATTAATTTTCT+TGG | - | chr4.3:25814405-25814424 | MS.gene47520:intron | 10.0% |
| !!! | TTATTTATATTTTTGATACA+TGG | - | chr4.3:25812799-25812818 | MS.gene47520:CDS | 10.0% |
| !! | TAATTAAAGATTTGCATATT+TGG | + | chr4.3:25812130-25812149 | None:intergenic | 15.0% |
| !! | AAATATGCCTATTAACTATT+AGG | + | chr4.3:25812390-25812409 | None:intergenic | 20.0% |
| !! | AAATCTTTAATTATCTTCCT+TGG | - | chr4.3:25812137-25812156 | MS.gene47520:intron | 20.0% |
| !! | AAGAGTTAGAATAAAAACTA+TGG | + | chr4.3:25812558-25812577 | None:intergenic | 20.0% |
| !! | AGAGTTAGAATAAAAACTAT+GGG | + | chr4.3:25812557-25812576 | None:intergenic | 20.0% |
| !! | ATTCAAACCTAATAGTTAAT+AGG | - | chr4.3:25812380-25812399 | MS.gene47520:intron | 20.0% |
| !! | CTTAAAACAACAACTAAAAA+GGG | - | chr4.3:25814442-25814461 | MS.gene47520:intron | 20.0% |
| !! | GAATCGAAATAAATCATATT+TGG | + | chr4.3:25814173-25814192 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTATATGCTCTTT+TGG | - | chr4.3:25813578-25813597 | MS.gene47520:CDS | 20.0% |
| ! | ACATTGAAAATCTACAATGT+AGG | - | chr4.3:25813705-25813724 | MS.gene47520:CDS | 25.0% |
| ! | AGCATATAAAAAAACTGTCA+TGG | + | chr4.3:25813574-25813593 | None:intergenic | 25.0% |
| ! | CATATTGATAGGTATTTGTT+AGG | - | chr4.3:25814193-25814212 | MS.gene47520:intron | 25.0% |
| ! | CATTGAAAATCTACAATGTA+GGG | - | chr4.3:25813706-25813725 | MS.gene47520:CDS | 25.0% |
| ! | CCTTAAAACAACAACTAAAA+AGG | - | chr4.3:25814441-25814460 | MS.gene47520:intron | 25.0% |
| ! | CTAACAAATACCTATCAATA+TGG | + | chr4.3:25814195-25814214 | None:intergenic | 25.0% |
| ! | GATTACTAGGCAAAATTAAA+GGG | + | chr4.3:25813523-25813542 | None:intergenic | 25.0% |
| ! | TACAAAAGCGACAATTAAAA+AGG | + | chr4.3:25814221-25814240 | None:intergenic | 25.0% |
| ! | TACATCAAAATGTGATTACT+AGG | + | chr4.3:25813536-25813555 | None:intergenic | 25.0% |
| ! | TATTTCGATTCCATATTGAT+AGG | - | chr4.3:25814182-25814201 | MS.gene47520:intron | 25.0% |
| ! | TCGAAATAAATCATATTTGG+TGG | + | chr4.3:25814170-25814189 | None:intergenic | 25.0% |
| ! | TCTTTCACTTTATTAACCTT+TGG | - | chr4.3:25813485-25813504 | MS.gene47520:intron | 25.0% |
| ! | TGATTACTAGGCAAAATTAA+AGG | + | chr4.3:25813524-25813543 | None:intergenic | 25.0% |
| ! | TTATTCTCTACAGTAAGTAA+AGG | + | chr4.3:25813268-25813287 | None:intergenic | 25.0% |
| !! | CGAATTAATTGACTCTAAAA+AGG | + | chr4.3:25812650-25812669 | None:intergenic | 25.0% |
| !! | TCTAGTTAGATTGTGTTTTA+TGG | - | chr4.3:25812715-25812734 | MS.gene47520:CDS | 25.0% |
| !!! | AATTTGCTTGAGTCTTATTT+CGG | + | chr4.3:25812909-25812928 | None:intergenic | 25.0% |
| !!! | AATTTTAGCCTTATTCTTCA+TGG | - | chr4.3:25813797-25813816 | MS.gene47520:intron | 25.0% |
| !!! | ATGTGAGTTTTCTAAAAGTA+TGG | - | chr4.3:25814083-25814102 | MS.gene47520:intron | 25.0% |
| !!! | CCTTTTTAGTTGTTGTTTTA+AGG | + | chr4.3:25814444-25814463 | None:intergenic | 25.0% |
| !!! | GACTTTTATTTTACTGCATA+TGG | + | chr4.3:25812255-25812274 | None:intergenic | 25.0% |
| AAAGAAAGTTGAGGATACAA+CGG | - | chr4.3:25813087-25813106 | MS.gene47520:intron | 30.0% | |
| ATCAAAGCATGCAATATCTA+AGG | + | chr4.3:25812503-25812522 | None:intergenic | 30.0% | |
| ATCTGACATGAGAATAGAAA+CGG | + | chr4.3:25814673-25814692 | None:intergenic | 30.0% | |
| ATTCACATACTTCTCTGAAT+TGG | + | chr4.3:25813238-25813257 | None:intergenic | 30.0% | |
| CGTTGCAATAAATAGTGAAA+GGG | + | chr4.3:25814316-25814335 | None:intergenic | 30.0% | |
| CTATTTATTGCAACGAGAAA+AGG | - | chr4.3:25814321-25814340 | MS.gene47520:intron | 30.0% | |
| CTCAATTATATCAGGAATAC+TGG | + | chr4.3:25813993-25814012 | None:intergenic | 30.0% | |
| TAACATATTGACCTCTAACT+GGG | + | chr4.3:25812292-25812311 | None:intergenic | 30.0% | |
| TCGTTGCAATAAATAGTGAA+AGG | + | chr4.3:25814317-25814336 | None:intergenic | 30.0% | |
| TCTGTTCTTGATGAACAAAT+TGG | - | chr4.3:25811846-25811865 | MS.gene47520:CDS | 30.0% | |
| TCTTTCATTGAGAGAAAATG+AGG | - | chr4.3:25813404-25813423 | MS.gene47520:intron | 30.0% | |
| TGATGCTTCAGTAAGAAATT+AGG | - | chr4.3:25812461-25812480 | MS.gene47520:intron | 30.0% | |
| TGGATTTCCTGTATTAATGT+AGG | - | chr4.3:25812819-25812838 | MS.gene47520:CDS | 30.0% | |
| TTAACATATTGACCTCTAAC+TGG | + | chr4.3:25812293-25812312 | None:intergenic | 30.0% | |
| TTATGGTGAAGCAAAATTCT+TGG | - | chr4.3:25812732-25812751 | MS.gene47520:CDS | 30.0% | |
| TTCACATACTTCTCTGAATT+GGG | + | chr4.3:25813237-25813256 | None:intergenic | 30.0% | |
| ! | CATTTTACCTTAAAAGAGTC+TGG | - | chr4.3:25813001-25813020 | MS.gene47520:CDS | 30.0% |
| ! | GTAGATTTTCAATGTTCTGA+AGG | + | chr4.3:25813700-25813719 | None:intergenic | 30.0% |
| ! | TCAACATTTTCATAAGACCA+GGG | + | chr4.3:25812199-25812218 | None:intergenic | 30.0% |
| ! | TTTTCTGTTGAATCAACATG+TGG | + | chr4.3:25813620-25813639 | None:intergenic | 30.0% |
| !! | TTCTAGTTCTAGTCATAAAC+TGG | + | chr4.3:25814135-25814154 | None:intergenic | 30.0% |
| !!! | CACTATCTTTTTTCCTATCT+CGG | - | chr4.3:25813133-25813152 | MS.gene47520:intron | 30.0% |
| AAAAAAGCTCATACCGAGAT+AGG | + | chr4.3:25813149-25813168 | None:intergenic | 35.0% | |
| AAAGTCCTACAAATTCTGCT+GGG | - | chr4.3:25813843-25813862 | MS.gene47520:intron | 35.0% | |
| AACATATTGACCTCTAACTG+GGG | + | chr4.3:25812291-25812310 | None:intergenic | 35.0% | |
| AAGACAAAACTTCTTACGAC+TGG | - | chr4.3:25814480-25814499 | MS.gene47520:intron | 35.0% | |
| AATAAGAAGTCTGATGCTGA+TGG | - | chr4.3:25813283-25813302 | MS.gene47520:intron | 35.0% | |
| ACAGTGCTCTCAATTATATC+AGG | + | chr4.3:25814001-25814020 | None:intergenic | 35.0% | |
| AGAAAACCTCGAAACATTTC+TGG | + | chr4.3:25813768-25813787 | None:intergenic | 35.0% | |
| AGCTAGTTGAAAAGTGAGTA+AGG | - | chr4.3:25812326-25812345 | MS.gene47520:intron | 35.0% | |
| ATCAATTGACGATTAGCACA+AGG | + | chr4.3:25812678-25812697 | None:intergenic | 35.0% | |
| ATTCAACTGCATTACGTTTC+TGG | - | chr4.3:25813444-25813463 | MS.gene47520:intron | 35.0% | |
| CACAATCTAACTAGATACAG+TGG | + | chr4.3:25812710-25812729 | None:intergenic | 35.0% | |
| CAGATGTTGATATTGTGAGT+TGG | - | chr4.3:25811898-25811917 | MS.gene47520:CDS | 35.0% | |
| GGAATTAAAGTCACCTTGTT+CGG | + | chr4.3:25812109-25812128 | None:intergenic | 35.0% | |
| GTATGACAAGGTAAAGCATA+CGG | - | chr4.3:25812967-25812986 | MS.gene47520:CDS | 35.0% | |
| TCACATACTTCTCTGAATTG+GGG | + | chr4.3:25813236-25813255 | None:intergenic | 35.0% | |
| TCCTCTTCCTACATTAATAC+AGG | + | chr4.3:25812829-25812848 | None:intergenic | 35.0% | |
| TCCTGTATTAATGTAGGAAG+AGG | - | chr4.3:25812825-25812844 | MS.gene47520:CDS | 35.0% | |
| TCGAATATTCAGTTGCATCA+GGG | + | chr4.3:25811962-25811981 | None:intergenic | 35.0% | |
| TGTGTGAATAAAAGAAAGCG+TGG | - | chr4.3:25814744-25814763 | MS.gene47520:CDS | 35.0% | |
| TTAGCATATCATTAGCAGCA+AGG | + | chr4.3:25813346-25813365 | None:intergenic | 35.0% | |
| TTCATTGAGAGAAAATGAGG+AGG | - | chr4.3:25813407-25813426 | MS.gene47520:intron | 35.0% | |
| TTGTGCTAATCGTCAATTGA+TGG | - | chr4.3:25812677-25812696 | MS.gene47520:CDS | 35.0% | |
| TTTCACATGTCATATACAGC+TGG | + | chr4.3:25812433-25812452 | None:intergenic | 35.0% | |
| ! | ACGCTTTCTTTTATTCACAC+AGG | + | chr4.3:25814745-25814764 | None:intergenic | 35.0% |
| ! | CTCAACATTTTCATAAGACC+AGG | + | chr4.3:25812200-25812219 | None:intergenic | 35.0% |
| ! | GTGTGAATAAAAGAAAGCGT+GGG | - | chr4.3:25814745-25814764 | MS.gene47520:CDS | 35.0% |
| ! | TGTGAATAAAAGAAAGCGTG+GGG | - | chr4.3:25814746-25814765 | MS.gene47520:CDS | 35.0% |
| ! | TTTCGAACCAGACTCTTTTA+AGG | + | chr4.3:25813011-25813030 | None:intergenic | 35.0% |
| !! | ATTTTAACAGCACTAGTGAG+TGG | + | chr4.3:25813373-25813392 | None:intergenic | 35.0% |
| !! | GATATAATTGAGAGCACTGT+TGG | - | chr4.3:25814001-25814020 | MS.gene47520:intron | 35.0% |
| !! | GATGATGATTTTGACAATCC+GGG | - | chr4.3:25813313-25813332 | MS.gene47520:intron | 35.0% |
| !! | GGATGATGATTTTGACAATC+CGG | - | chr4.3:25813312-25813331 | MS.gene47520:intron | 35.0% |
| !! | GTCCTTTTTCATATACTGGT+CGG | + | chr4.3:25812177-25812196 | None:intergenic | 35.0% |
| AACTATGGGTGATGAACAGT+TGG | + | chr4.3:25812543-25812562 | None:intergenic | 40.0% | |
| AAGACGACGAAAGAAAGTTG+AGG | - | chr4.3:25813078-25813097 | MS.gene47520:intron | 40.0% | |
| AAGATCAAGTGATGCTGAAG+TGG | - | chr4.3:25812022-25812041 | MS.gene47520:CDS | 40.0% | |
| AAGTCACCAGTACAGAAGTA+AGG | - | chr4.3:25813045-25813064 | MS.gene47520:intron | 40.0% | |
| ACAAAACTTCTTACGACTGG+TGG | - | chr4.3:25814483-25814502 | MS.gene47520:intron | 40.0% | |
| AGAACTTGCAGAGTATGACA+AGG | - | chr4.3:25812955-25812974 | MS.gene47520:CDS | 40.0% | |
| AGAGGAAGTTGACAGATCAT+TGG | - | chr4.3:25812843-25812862 | MS.gene47520:CDS | 40.0% | |
| ATCAGAGTCTGTATCAGCAA+AGG | + | chr4.3:25811988-25812007 | None:intergenic | 40.0% | |
| ATGAATGAACACGCAAAGAG+CGG | + | chr4.3:25812618-25812637 | None:intergenic | 40.0% | |
| CAAAGTCCTACAAATTCTGC+TGG | - | chr4.3:25813842-25813861 | MS.gene47520:intron | 40.0% | |
| CACATACTTCTCTGAATTGG+GGG | + | chr4.3:25813235-25813254 | None:intergenic | 40.0% | |
| CAGTATATGAAAAAGGACCC+TGG | - | chr4.3:25812179-25812198 | MS.gene47520:intron | 40.0% | |
| CTCGAATATTCAGTTGCATC+AGG | + | chr4.3:25811963-25811982 | None:intergenic | 40.0% | |
| GACCGACCAGTATATGAAAA+AGG | - | chr4.3:25812172-25812191 | MS.gene47520:intron | 40.0% | |
| GCACATCACCATGAAGAATA+AGG | + | chr4.3:25813808-25813827 | None:intergenic | 40.0% | |
| TAACTGGGGACTCTTATCTA+AGG | + | chr4.3:25812277-25812296 | None:intergenic | 40.0% | |
| TCAGAGTTCTTTGGTGAGAA+TGG | - | chr4.3:25812047-25812066 | MS.gene47520:CDS | 40.0% | |
| TGAACTTCAGGAGGTGAAAA+TGG | - | chr4.3:25814578-25814597 | MS.gene47520:CDS | 40.0% | |
| TGCTAATCGTCAATTGATGG+CGG | - | chr4.3:25812680-25812699 | MS.gene47520:CDS | 40.0% | |
| TGTTCTGATGCATGAACTTC+AGG | - | chr4.3:25814566-25814585 | MS.gene47520:CDS | 40.0% | |
| TGTTGGATCTACCAAAAACG+AGG | - | chr4.3:25811935-25811954 | MS.gene47520:CDS | 40.0% | |
| ! | ATTGTGAGTTGGACGAACAA+GGG | - | chr4.3:25811909-25811928 | MS.gene47520:CDS | 40.0% |
| ! | CTGTACTGGTGACTTGAAAA+TGG | + | chr4.3:25813040-25813059 | None:intergenic | 40.0% |
| ! | GAAGTGGATTCAGAGTTCTT+TGG | - | chr4.3:25812038-25812057 | MS.gene47520:CDS | 40.0% |
| ! | TATTGTGAGTTGGACGAACA+AGG | - | chr4.3:25811908-25811927 | MS.gene47520:CDS | 40.0% |
| ! | TTTTCGCCTTACTTCTGTAC+TGG | + | chr4.3:25813054-25813073 | None:intergenic | 40.0% |
| !! | CAGGACCAAAAGTATCATGA+GGG | + | chr4.3:25812082-25812101 | None:intergenic | 40.0% |
| !! | CAGGGTCCTTTTTCATATAC+TGG | + | chr4.3:25812181-25812200 | None:intergenic | 40.0% |
| !! | GCAAGCAGTTGGTAACAATA+AGG | + | chr4.3:25813213-25813232 | None:intergenic | 40.0% |
| !! | TCAGGACCAAAAGTATCATG+AGG | + | chr4.3:25812083-25812102 | None:intergenic | 40.0% |
| !! | TGACATTGATGATGCACAGA+TGG | - | chr4.3:25814536-25814555 | MS.gene47520:CDS | 40.0% |
| AAACTTCTTACGACTGGTGG+TGG | - | chr4.3:25814486-25814505 | MS.gene47520:intron | 45.0% | |
| AACAGACTCCACCTTAACGA+CGG | + | chr4.3:25811832-25811851 | None:intergenic | 45.0% | |
| AAGCTTGAAACACAGCTGTC+AGG | + | chr4.3:25813959-25813978 | None:intergenic | 45.0% | |
| AATGGATACACGGCATCTGT+TGG | - | chr4.3:25813866-25813885 | MS.gene47520:intron | 45.0% | |
| ACTCACATGTTCACCAGAGT+CGG | + | chr4.3:25814071-25814090 | None:intergenic | 45.0% | |
| ACTGATTATCAGGTTCCCCA+GGG | + | chr4.3:25814809-25814828 | None:intergenic | 45.0% | |
| AGAAGCTTCAGGAGGTGAAA+AGG | - | chr4.3:25814625-25814644 | MS.gene47520:CDS | 45.0% | |
| AGATAAGAGTCCCCAGTTAG+AGG | - | chr4.3:25812278-25812297 | MS.gene47520:intron | 45.0% | |
| ATTTCATCCGACCTCTGATG+TGG | - | chr4.3:25812870-25812889 | MS.gene47520:CDS | 45.0% | |
| CCATTCCCAGCAGAATTTGT+AGG | + | chr4.3:25813851-25813870 | None:intergenic | 45.0% | |
| CCTACAAATTCTGCTGGGAA+TGG | - | chr4.3:25813848-25813867 | MS.gene47520:intron | 45.0% | |
| CTCTGATGTGGCGTCTAAAA+TGG | - | chr4.3:25812882-25812901 | MS.gene47520:CDS | 45.0% | |
| CTGGTGACTTGAAAATGGCA+AGG | + | chr4.3:25813035-25813054 | None:intergenic | 45.0% | |
| GAAGCTTCAGGAGGTGAAAA+GGG | - | chr4.3:25814626-25814645 | MS.gene47520:CDS | 45.0% | |
| GACAGCTGTGTTTCAAGCTT+TGG | - | chr4.3:25813959-25813978 | MS.gene47520:intron | 45.0% | |
| GGAAGTTGACAGATCATTGG+AGG | - | chr4.3:25812846-25812865 | MS.gene47520:CDS | 45.0% | |
| GTGAAAAGGGAAGTGGAAGA+AGG | - | chr4.3:25814639-25814658 | MS.gene47520:CDS | 45.0% | |
| GTGTCAGTGCATTTGAGCAA+AGG | + | chr4.3:25813656-25813675 | None:intergenic | 45.0% | |
| TAGCAGCAAGGATACTAACC+CGG | + | chr4.3:25813334-25813353 | None:intergenic | 45.0% | |
| TCACGTCCAGAAATGTTTCG+AGG | - | chr4.3:25813759-25813778 | MS.gene47520:CDS | 45.0% | |
| TCAGGAGGTGAAAATGGAAG+TGG | - | chr4.3:25814584-25814603 | MS.gene47520:CDS | 45.0% | |
| TCTGATGCATGAACTTCAGG+AGG | - | chr4.3:25814569-25814588 | MS.gene47520:CDS | 45.0% | |
| TGACAAGGTAAAGCATACGG+CGG | - | chr4.3:25812970-25812989 | MS.gene47520:CDS | 45.0% | |
| TTCTGCTGGGAATGGATACA+CGG | - | chr4.3:25813856-25813875 | MS.gene47520:intron | 45.0% | |
| TTTCACCTCCTGAAGCTTCT+GGG | + | chr4.3:25814625-25814644 | None:intergenic | 45.0% | |
| ! | CATTTTAGACGCCACATCAG+AGG | + | chr4.3:25812884-25812903 | None:intergenic | 45.0% |
| ! | GCAAGCCCTCATGATACTTT+TGG | - | chr4.3:25812074-25812093 | MS.gene47520:CDS | 45.0% |
| ! | TTTTCACCTCCTGAAGCTTC+TGG | + | chr4.3:25814626-25814645 | None:intergenic | 45.0% |
| !! | TGAGAGCACTGTTGGTTTGT+TGG | - | chr4.3:25814009-25814028 | MS.gene47520:intron | 45.0% |
| !!! | TGATGCCACTTTTCAGTGTG+CGG | + | chr4.3:25813733-25813752 | None:intergenic | 45.0% |
| ACAGACTCCACCTTAACGAC+GGG | + | chr4.3:25811831-25811850 | None:intergenic | 50.0% | |
| AGGGAGATCACTACTGCCAA+AGG | + | chr4.3:25813504-25813523 | None:intergenic | 50.0% | |
| AGTCACCTTGTTCGGAACTC+AGG | + | chr4.3:25812101-25812120 | None:intergenic | 50.0% | |
| ATGGGTGATGAACAGTTGGC+TGG | + | chr4.3:25812539-25812558 | None:intergenic | 50.0% | |
| CGGTCGCTAACAAATGTCCA+AGG | + | chr4.3:25812157-25812176 | None:intergenic | 50.0% | |
| CTGATTATCAGGTTCCCCAG+GGG | + | chr4.3:25814808-25814827 | None:intergenic | 50.0% | |
| GTCTGATGCTGATGGCTCTT+TGG | - | chr4.3:25813291-25813310 | MS.gene47520:intron | 50.0% | |
| GTTCTTTGGTGAGAATGGCG+CGG | - | chr4.3:25812052-25812071 | MS.gene47520:CDS | 50.0% | |
| GTTGGAACATGAAGTCCCCT+GGG | - | chr4.3:25814790-25814809 | MS.gene47520:CDS | 50.0% | |
| TACACGGCATCTGTTGGAGT+TGG | - | chr4.3:25813872-25813891 | MS.gene47520:intron | 50.0% | |
| TCAGGAGGTGAAAAGGGAAG+TGG | - | chr4.3:25814632-25814651 | MS.gene47520:CDS | 50.0% | |
| TGCTGATGTCACCCTCCAAT+CGG | - | chr4.3:25814036-25814055 | MS.gene47520:intron | 50.0% | |
| TGGACGAACAAGGGTGATGT+TGG | - | chr4.3:25811918-25811937 | MS.gene47520:CDS | 50.0% | |
| TTAGACGCCACATCAGAGGT+CGG | + | chr4.3:25812880-25812899 | None:intergenic | 50.0% | |
| TTGGAACATGAAGTCCCCTG+GGG | - | chr4.3:25814791-25814810 | MS.gene47520:CDS | 50.0% | |
| TTGGTCCTGAGTTCCGAACA+AGG | - | chr4.3:25812093-25812112 | MS.gene47520:intron | 50.0% | |
| ! | CACTGATTATCAGGTTCCCC+AGG | + | chr4.3:25814810-25814829 | None:intergenic | 50.0% |
| ! | TGCATCAGGGTCCTCGTTTT+TGG | + | chr4.3:25811949-25811968 | None:intergenic | 50.0% |
| !! | GTTCTGAAGGAGCAGCTCAA+AGG | + | chr4.3:25813687-25813706 | None:intergenic | 50.0% |
| ACCTCCTGAAGCTTCTGGGT+GGG | + | chr4.3:25814621-25814640 | None:intergenic | 55.0% | |
| ACGGCATCTGTTGGAGTTGG+AGG | - | chr4.3:25813875-25813894 | MS.gene47520:intron | 55.0% | |
| AGGGTCCGCACACTGAAAAG+TGG | - | chr4.3:25813725-25813744 | MS.gene47520:CDS | 55.0% | |
| CAATCCCACCCAGAAGCTTC+AGG | - | chr4.3:25814614-25814633 | MS.gene47520:CDS | 55.0% | |
| CTCCACCTTAACGACGGGAT+TGG | + | chr4.3:25811826-25811845 | None:intergenic | 55.0% | |
| CTGAATTGGGGGCAAGCAGT+TGG | + | chr4.3:25813224-25813243 | None:intergenic | 55.0% | |
| GGTTGGAACATGAAGTCCCC+TGG | - | chr4.3:25814789-25814808 | MS.gene47520:CDS | 55.0% | |
| GTCCAATCCCGTCGTTAAGG+TGG | - | chr4.3:25811821-25811840 | MS.gene47520:CDS | 55.0% | |
| TTCACCAGAGTCGGCAACCA+AGG | + | chr4.3:25814062-25814081 | None:intergenic | 55.0% | |
| ! | GCAAAGCTGGTTCAGGTGGT+TGG | - | chr4.3:25814772-25814791 | MS.gene47520:CDS | 55.0% |
| AGTCGGCAACCAAGGCCGAT+TGG | + | chr4.3:25814054-25814073 | None:intergenic | 60.0% | |
| CACCTCCTGAAGCTTCTGGG+TGG | + | chr4.3:25814622-25814641 | None:intergenic | 60.0% | |
| GGCAACCAAGGCCGATTGGA+GGG | + | chr4.3:25814050-25814069 | None:intergenic | 60.0% | |
| TCCCACCCAGAAGCTTCAGG+AGG | - | chr4.3:25814617-25814636 | MS.gene47520:CDS | 60.0% | |
| TGTCACCCTCCAATCGGCCT+TGG | - | chr4.3:25814042-25814061 | MS.gene47520:intron | 60.0% | |
| ! | GAGCGCAAAGCTGGTTCAGG+TGG | - | chr4.3:25814768-25814787 | MS.gene47520:CDS | 60.0% |
| CGGCAACCAAGGCCGATTGG+AGG | + | chr4.3:25814051-25814070 | None:intergenic | 65.0% | |
| ! | AAGCGTGGGGAGCGCAAAGC+TGG | - | chr4.3:25814759-25814778 | MS.gene47520:CDS | 65.0% |
| ! | GGGGAGCGCAAAGCTGGTTC+AGG | - | chr4.3:25814765-25814784 | MS.gene47520:CDS | 65.0% |
| !! | TCGGCCTTGGTTGCCGACTC+TGG | - | chr4.3:25814055-25814074 | MS.gene47520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25811819 | 25814830 | 25811819 | ID=MS.gene47520 |
| chr4.3 | mRNA | 25811819 | 25814830 | 25811819 | ID=MS.gene47520.t1;Parent=MS.gene47520 |
| chr4.3 | exon | 25814535 | 25814830 | 25814535 | ID=MS.gene47520.t1.exon1;Parent=MS.gene47520.t1 |
| chr4.3 | CDS | 25814535 | 25814830 | 25814535 | ID=cds.MS.gene47520.t1;Parent=MS.gene47520.t1 |
| chr4.3 | exon | 25813495 | 25813808 | 25813495 | ID=MS.gene47520.t1.exon2;Parent=MS.gene47520.t1 |
| chr4.3 | CDS | 25813495 | 25813808 | 25813495 | ID=cds.MS.gene47520.t1;Parent=MS.gene47520.t1 |
| chr4.3 | exon | 25813315 | 25813368 | 25813315 | ID=MS.gene47520.t1.exon3;Parent=MS.gene47520.t1 |
| chr4.3 | CDS | 25813315 | 25813368 | 25813315 | ID=cds.MS.gene47520.t1;Parent=MS.gene47520.t1 |
| chr4.3 | exon | 25812565 | 25813043 | 25812565 | ID=MS.gene47520.t1.exon4;Parent=MS.gene47520.t1 |
| chr4.3 | CDS | 25812565 | 25813043 | 25812565 | ID=cds.MS.gene47520.t1;Parent=MS.gene47520.t1 |
| chr4.3 | exon | 25811819 | 25812094 | 25811819 | ID=MS.gene47520.t1.exon5;Parent=MS.gene47520.t1 |
| chr4.3 | CDS | 25811819 | 25812094 | 25811819 | ID=cds.MS.gene47520.t1;Parent=MS.gene47520.t1 |
| Gene Sequence |
| Protein sequence |
