Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052209.t1 | XP_003601956.1 | 99.7 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 1.20E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052209.t1 | G7J3S2 | 99.7 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 9.0e-136 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene052209 | 0.843826 | 1.10E-58 | -1.69E-46 |
| MS.gene052169 | MS.gene052209 | 0.827896 | 1.21E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene052664 | 0.806541 | 7.82E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene054662 | 0.821037 | 4.99E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene054941 | 0.828177 | 1.04E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene05652 | 0.842031 | 3.31E-58 | -1.69E-46 |
| MS.gene052209 | MS.gene057367 | 0.835824 | 1.34E-56 | -1.69E-46 |
| MS.gene052209 | MS.gene057669 | 0.886697 | 2.73E-72 | -1.69E-46 |
| MS.gene052209 | MS.gene057990 | 0.806726 | 7.15E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene058853 | 0.808528 | 2.96E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene059616 | 0.831406 | 1.70E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene063734 | 0.811586 | 6.50E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene06421 | 0.825933 | 3.58E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene064328 | 0.817791 | 2.75E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene065682 | 0.82318 | 1.59E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene070324 | 0.843733 | 1.17E-58 | -1.69E-46 |
| MS.gene052209 | MS.gene071422 | 0.835542 | 1.58E-56 | -1.69E-46 |
| MS.gene052209 | MS.gene072093 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene072255 | 0.811984 | 5.33E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene073059 | 0.82156 | 3.78E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene073062 | 0.819169 | 1.34E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene074400 | 0.831356 | 1.75E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene074515 | 0.830176 | 3.40E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene08362 | 0.804258 | 2.36E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene21734 | 0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene21888 | 0.813205 | 2.88E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene25236 | 0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene25639 | 0.81367 | 2.28E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene25726 | 0.82149 | 3.93E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene25903 | 0.851408 | 9.05E-61 | -1.69E-46 |
| MS.gene052209 | MS.gene26681 | 0.801865 | 7.36E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene28568 | 0.808585 | 2.88E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene29215 | 0.814156 | 1.78E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene29939 | 0.81582 | 7.60E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene29940 | 0.818427 | 1.97E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene29942 | 0.822224 | 2.66E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene31973 | 0.800356 | 1.50E-48 | -1.69E-46 |
| MS.gene052209 | MS.gene32240 | 0.814148 | 1.79E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene34372 | 0.804654 | 1.95E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene34976 | 0.817244 | 3.65E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene36778 | 0.83818 | 3.35E-57 | -1.69E-46 |
| MS.gene052209 | MS.gene36820 | 0.838712 | 2.44E-57 | -1.69E-46 |
| MS.gene052209 | MS.gene36957 | 0.809611 | 1.74E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene37495 | 0.814379 | 1.59E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene38166 | 0.815622 | 8.41E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene39911 | 0.800362 | 1.49E-48 | -1.69E-46 |
| MS.gene052209 | MS.gene41190 | 0.80761 | 4.65E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene43727 | 0.819206 | 1.31E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene44930 | 0.802195 | 6.30E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene46636 | 0.827923 | 1.20E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene46903 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene46907 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene47520 | 0.825228 | 5.26E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene47664 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene48428 | 0.820181 | 7.85E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene49349 | 0.824285 | 8.77E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene50576 | 0.80225 | 6.13E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene50921 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene052209 | MS.gene51554 | 0.828119 | 1.07E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene52072 | 0.813999 | 1.93E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene52113 | 0.886426 | 3.46E-72 | -1.69E-46 |
| MS.gene052209 | MS.gene53188 | 0.814356 | 1.61E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene55401 | 0.801804 | 7.57E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene55890 | 0.813181 | 2.91E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene59228 | 0.836051 | 1.17E-56 | -1.69E-46 |
| MS.gene052209 | MS.gene59230 | 0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene60041 | 0.815622 | 8.41E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene60269 | 0.802239 | 6.17E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene60693 | 0.830501 | 2.83E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene61094 | 0.809866 | 1.53E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene61684 | 0.822475 | 2.32E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene61745 | 0.821427 | 4.06E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene64726 | 0.807016 | 6.21E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene66273 | 0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene68832 | 0.836894 | 7.16E-57 | -1.69E-46 |
| MS.gene052209 | MS.gene69607 | 0.828773 | 7.46E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene70491 | 0.830077 | 3.60E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene70579 | 0.850074 | 2.15E-60 | -1.69E-46 |
| MS.gene052209 | MS.gene72164 | 0.829442 | 5.14E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene73893 | 0.825471 | 4.60E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene74548 | 0.802449 | 5.58E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene75179 | 0.831759 | 1.39E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene75365 | 0.813072 | 3.08E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene75473 | 0.871781 | 5.26E-67 | -1.69E-46 |
| MS.gene052209 | MS.gene75704 | 0.812996 | 3.20E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene75761 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene75915 | 0.815711 | 8.04E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene75918 | 0.827618 | 1.42E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene77500 | 0.813079 | 3.07E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene77503 | 0.809129 | 2.20E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene77904 | 0.828113 | 1.08E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene79219 | 0.917715 | 3.79E-86 | -1.69E-46 |
| MS.gene052209 | MS.gene79864 | 0.811197 | 7.90E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene80899 | 0.822715 | 2.04E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene80994 | 0.806881 | 6.63E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene86318 | 0.807262 | 5.51E-50 | -1.69E-46 |
| MS.gene052209 | MS.gene88918 | 0.823889 | 1.09E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene90842 | 0.832156 | 1.11E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene91871 | 0.811091 | 8.33E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene92313 | 0.833838 | 4.24E-56 | -1.69E-46 |
| MS.gene052209 | MS.gene92996 | 0.81805 | 2.40E-52 | -1.69E-46 |
| MS.gene052209 | MS.gene93058 | 0.81127 | 7.62E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene93762 | 0.81348 | 2.51E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene94553 | 0.801778 | 7.67E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene94954 | 0.84811 | 7.55E-60 | -1.69E-46 |
| MS.gene052209 | MS.gene95672 | 0.854685 | 1.04E-61 | -1.69E-46 |
| MS.gene052209 | MS.gene98171 | 0.809294 | 2.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052209.t1 | MTR_3g087250 | 99.666 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| MS.gene052209.t1 | MTR_3g074260 | 59.344 | 305 | 96 | 7 | 3 | 299 | 4 | 288 | 1.14e-107 | 315 |
| MS.gene052209.t1 | MTR_0276s0040 | 50.321 | 312 | 115 | 6 | 5 | 296 | 4 | 295 | 3.30e-89 | 270 |
| MS.gene052209.t1 | MTR_3g074260 | 59.483 | 232 | 75 | 5 | 71 | 299 | 1 | 216 | 2.99e-79 | 239 |
| MS.gene052209.t1 | MTR_3g074260 | 60.891 | 202 | 63 | 5 | 3 | 195 | 4 | 198 | 3.56e-72 | 221 |
| MS.gene052209.t1 | MTR_3g036400 | 58.065 | 62 | 23 | 1 | 71 | 129 | 1 | 62 | 1.35e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052209.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene052209.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene052209.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene052209.t1 | AT4G39860 | 62.626 | 297 | 109 | 2 | 3 | 299 | 4 | 298 | 2.62e-124 | 357 |
| MS.gene052209.t1 | AT1G78150 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.54e-90 | 271 |
| MS.gene052209.t1 | AT1G78150 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.54e-90 | 271 |
| MS.gene052209.t1 | AT1G35780 | 50.980 | 306 | 118 | 7 | 3 | 299 | 4 | 286 | 6.71e-87 | 262 |
| MS.gene052209.t1 | AT1G78150 | 47.866 | 328 | 112 | 6 | 3 | 299 | 4 | 303 | 3.13e-84 | 255 |
| MS.gene052209.t1 | AT2G22270 | 44.615 | 325 | 140 | 11 | 10 | 299 | 9 | 328 | 1.36e-69 | 219 |
| MS.gene052209.t1 | AT2G22270 | 45.423 | 284 | 116 | 10 | 51 | 299 | 10 | 289 | 2.89e-59 | 191 |
| MS.gene052209.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
| MS.gene052209.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
| MS.gene052209.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
Find 82 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGATGTCCTCAAATTTC+TGG | 0.079733 | 3.2:+74491811 | None:intergenic |
| TTAACAGGGTCTTTGATTTC+TGG | 0.136628 | 3.2:+74490567 | None:intergenic |
| CAGAAGTTTGCAGAGCTTTC+AGG | 0.210481 | 3.2:-74490696 | MS.gene052209:CDS |
| GGGCAAAGTAATATCTTATT+TGG | 0.218414 | 3.2:-74490759 | MS.gene052209:CDS |
| CTCTCAGCTTTGCCCTGCTC+AGG | 0.267205 | 3.2:+74490625 | None:intergenic |
| GAAATCAAAGACCCTGTTAA+AGG | 0.278225 | 3.2:-74490564 | MS.gene052209:CDS |
| GGTATAGAGGTAGGCTTCTT+AGG | 0.279404 | 3.2:+74492037 | None:intergenic |
| CTCACTGGAAATGATATATT+TGG | 0.293153 | 3.2:-74491920 | MS.gene052209:CDS |
| GGTTTGCGGGCACCTTTAAC+AGG | 0.293722 | 3.2:+74490552 | None:intergenic |
| TTCTTTGATGTCTTCTCAAC+AGG | 0.305067 | 3.2:+74490729 | None:intergenic |
| ATGGAACGCGGTACAATTTC+AGG | 0.309840 | 3.2:+74491890 | None:intergenic |
| TCCAGTGAGCTCCTTGGTCT+TGG | 0.319341 | 3.2:+74491934 | None:intergenic |
| GCATCTCAGCAAGCAATAAA+TGG | 0.332847 | 3.2:-74492100 | MS.gene052209:intron |
| CTGAAAGCTCTGCAAACTTC+TGG | 0.342314 | 3.2:+74490697 | None:intergenic |
| CTTAGGACTAACACTTTCTT+CGG | 0.378680 | 3.2:+74492054 | None:intergenic |
| AACTAGCATACGCATATATC+AGG | 0.379428 | 3.2:-74492254 | MS.gene052209:intron |
| CATGGCAGCTGCACGAACTT+TGG | 0.379756 | 3.2:-74491870 | MS.gene052209:CDS |
| ACCGATGTCCTCAAATTTCT+GGG | 0.398231 | 3.2:+74491812 | None:intergenic |
| TTCCTGTAATTGTAGCCTGC+TGG | 0.421397 | 3.2:-74490783 | MS.gene052209:intron |
| ACTTTCAGCAAGCCATGCTC+AGG | 0.438294 | 3.2:-74492364 | MS.gene052209:intron |
| TGGGACTTTGCAAACTGACT+TGG | 0.452037 | 3.2:-74491987 | MS.gene052209:CDS |
| TCTCAGCTTTGCCCTGCTCA+GGG | 0.467139 | 3.2:+74490626 | None:intergenic |
| GAGCTTCTTCTTCAGTGAGC+TGG | 0.469415 | 3.2:+74493252 | None:intergenic |
| CTTTGCTACCTCAGGTATAG+AGG | 0.474305 | 3.2:+74492024 | None:intergenic |
| GTCCTCAAATTTCTGGGAAG+AGG | 0.478841 | 3.2:+74491818 | None:intergenic |
| TCACGCTGCTTTGCTACCTC+AGG | 0.479040 | 3.2:+74492016 | None:intergenic |
| GCAATGCTGCTGTCTCCACC+AGG | 0.480965 | 3.2:+74490528 | None:intergenic |
| ATCAGAAGGCTGACGAGAGC+GGG | 0.481733 | 3.2:+74493301 | None:intergenic |
| CTGACGAGAGCGGGTGGCGG+AGG | 0.484128 | 3.2:+74493310 | None:intergenic |
| GAATCAACAACAACGGGAGG+AGG | 0.485353 | 3.2:+74493332 | None:intergenic |
| CAAAGTTCGTGCAGCTGCCA+TGG | 0.485787 | 3.2:+74491871 | None:intergenic |
| CGCGGTACAATTTCAGGAGG+AGG | 0.490011 | 3.2:+74491896 | None:intergenic |
| GCGGAGGAATCAACAACAAC+GGG | 0.491550 | 3.2:+74493326 | None:intergenic |
| CTGTAATTGTAGCCTGCTGG+TGG | 0.494796 | 3.2:-74490780 | MS.gene052209:intron |
| TTCCATGGAGATGTTCCAGC+AGG | 0.495508 | 3.2:-74490663 | MS.gene052209:CDS |
| GCAAAGCTGAGAGAAATAAC+TGG | 0.502572 | 3.2:-74490615 | MS.gene052209:CDS |
| AATGCTGCTGTCTCCACCAG+GGG | 0.506313 | 3.2:+74490530 | None:intergenic |
| AACCTCTTCCCAGAAATTTG+AGG | 0.507551 | 3.2:-74491820 | MS.gene052209:CDS |
| TGCACGAACTTTGGAATCAA+AGG | 0.509149 | 3.2:-74491861 | MS.gene052209:CDS |
| AAGCTCAATCTCTTTCCAAA+AGG | 0.514977 | 3.2:-74493235 | MS.gene052209:intron |
| GCCAAGACCAAGGAGCTCAC+TGG | 0.521289 | 3.2:-74491935 | MS.gene052209:CDS |
| ATATTACTTTGCCCACCAGC+AGG | 0.525761 | 3.2:+74490768 | None:intergenic |
| AGGCTGACGAGAGCGGGTGG+CGG | 0.529442 | 3.2:+74493307 | None:intergenic |
| ATCATTTCCAGTGAGCTCCT+TGG | 0.534478 | 3.2:+74491928 | None:intergenic |
| TGAAATTGTACCGCGTTCCA+TGG | 0.543593 | 3.2:-74491888 | MS.gene052209:CDS |
| TCAACAACAACGGGAGGAGG+AGG | 0.546104 | 3.2:+74493335 | None:intergenic |
| ATCAAAGGAAAGCAAGGACA+TGG | 0.548897 | 3.2:-74491846 | MS.gene052209:CDS |
| GTTTGCGGGCACCTTTAACA+GGG | 0.549073 | 3.2:+74490553 | None:intergenic |
| GAAGATTCTGCATCAGAAGC+CGG | 0.549556 | 3.2:-74492292 | MS.gene052209:CDS |
| GCAAAGCAGCGTGAACTGAG+TGG | 0.567625 | 3.2:-74492007 | MS.gene052209:CDS |
| TTGGTGTGTGTCTTTCTCAC+CGG | 0.575218 | 3.2:+74493389 | None:intergenic |
| ACACTTCCGATCTCCTCACT+TGG | 0.577893 | 3.2:-74493367 | MS.gene052209:CDS |
| TTTGGAATCAAAGGAAAGCA+AGG | 0.578160 | 3.2:-74491852 | MS.gene052209:CDS |
| TCCCAGAAATTTGAGGACAT+CGG | 0.579400 | 3.2:-74491813 | MS.gene052209:CDS |
| ATCCTGCTGGAACATCTCCA+TGG | 0.579980 | 3.2:+74490661 | None:intergenic |
| GGCAGTGACATATTTGCTGA+TGG | 0.581577 | 3.2:-74490594 | MS.gene052209:CDS |
| GCTACCTCAGGTATAGAGGT+AGG | 0.582241 | 3.2:+74492028 | None:intergenic |
| AAATATCATAATTTAGAGCA+AGG | 0.582571 | 3.2:+74490506 | None:intergenic |
| ATGAAAGAGATGAGTGGACA+TGG | 0.583015 | 3.2:-74492334 | MS.gene052209:CDS |
| AGTGAGGAGATCGGAAGTGT+TGG | 0.589898 | 3.2:+74493370 | None:intergenic |
| TTCCGATCTCCTCACTTGGT+CGG | 0.594758 | 3.2:-74493363 | MS.gene052209:CDS |
| CAATGCTGCTGTCTCCACCA+GGG | 0.594808 | 3.2:+74490529 | None:intergenic |
| TTCCGACCAAGTGAGGAGAT+CGG | 0.598387 | 3.2:+74493361 | None:intergenic |
| CGTGCAGCTGCCATGGAACG+CGG | 0.599947 | 3.2:+74491878 | None:intergenic |
| AACAACAATGGGAAGCACTC+CGG | 0.604363 | 3.2:-74493408 | None:intergenic |
| TATAAAATGAAAGAGATGAG+TGG | 0.604599 | 3.2:-74492340 | MS.gene052209:CDS |
| CAAAGCAGCGTGAACTGAGT+GGG | 0.604931 | 3.2:-74492006 | MS.gene052209:CDS |
| ACCTTGCTGATTCTATCAGA+AGG | 0.610704 | 3.2:+74493287 | None:intergenic |
| AGAAGGCTGACGAGAGCGGG+TGG | 0.616356 | 3.2:+74493304 | None:intergenic |
| TATCAGAAGGCTGACGAGAG+CGG | 0.623249 | 3.2:+74493300 | None:intergenic |
| GAGGAATCAACAACAACGGG+AGG | 0.627908 | 3.2:+74493329 | None:intergenic |
| GAGGAACTTCCGACCAAGTG+AGG | 0.628730 | 3.2:+74493354 | None:intergenic |
| ATGCTGCTGTCTCCACCAGG+GGG | 0.629578 | 3.2:+74490531 | None:intergenic |
| GCGGTACAATTTCAGGAGGA+GGG | 0.631603 | 3.2:+74491897 | None:intergenic |
| GCCTTCTGATAGAATCAGCA+AGG | 0.638816 | 3.2:-74493288 | MS.gene052209:CDS |
| TGTAATTGTAGCCTGCTGGT+GGG | 0.644942 | 3.2:-74490779 | MS.gene052209:intron |
| CTTTCAGCAAGCCATGCTCA+GGG | 0.644956 | 3.2:-74492363 | MS.gene052209:intron |
| AATATCAAATGCCAAGACCA+AGG | 0.645109 | 3.2:-74491945 | MS.gene052209:CDS |
| GGCGGAGGAATCAACAACAA+CGG | 0.655351 | 3.2:+74493325 | None:intergenic |
| TCAAAGGAAAGCAAGGACAT+GGG | 0.665351 | 3.2:-74491845 | MS.gene052209:CDS |
| GAAGCCTACCTCTATACCTG+AGG | 0.688793 | 3.2:-74492032 | MS.gene052209:CDS |
| GAACGCGGTACAATTTCAGG+AGG | 0.704954 | 3.2:+74491893 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCAAATTGAAAATAAA+CGG | + | chr3.2:74490937-74490956 | None:intergenic | 15.0% |
| !!! | ACTCTTCATTTTTATTTTTT+TGG | - | chr3.2:74492399-74492418 | MS.gene052209:intron | 15.0% |
| !!! | CTCTTCATTTTTATTTTTTT+GGG | - | chr3.2:74492400-74492419 | MS.gene052209:intron | 15.0% |
| !!! | TAAAATTTAAGTCTGTTTTT+GGG | - | chr3.2:74492709-74492728 | MS.gene052209:intron | 15.0% |
| !!! | TATAATATTTTCTTATGACA+TGG | - | chr3.2:74492231-74492250 | MS.gene052209:intron | 15.0% |
| !!! | TCAAAATCTACTTTTAAATT+TGG | - | chr3.2:74491053-74491072 | MS.gene052209:intron | 15.0% |
| !!! | TCTTCATTTTTATTTTTTTG+GGG | - | chr3.2:74492401-74492420 | MS.gene052209:intron | 15.0% |
| !! | AAACACATAAAAGAAACAAA+TGG | + | chr3.2:74492946-74492965 | None:intergenic | 20.0% |
| !! | TCAATTTGATGTTTGAAAAA+TGG | + | chr3.2:74491742-74491761 | None:intergenic | 20.0% |
| !! | TCATATTTAAGTGTTTGTTT+AGG | + | chr3.2:74491429-74491448 | None:intergenic | 20.0% |
| !!! | AAAAAAATCACTTTTTTGTG+TGG | + | chr3.2:74491277-74491296 | None:intergenic | 20.0% |
| !!! | AGAAAAAAATCTGAAACAAA+CGG | - | chr3.2:74491466-74491485 | MS.gene052209:intron | 20.0% |
| !!! | ATATTTAAATTTTGCATTCC+AGG | + | chr3.2:74492373-74492392 | None:intergenic | 20.0% |
| !!! | ATCTGTTTCTTAATTTGAAA+TGG | - | chr3.2:74490824-74490843 | MS.gene052209:intron | 20.0% |
| !!! | ATTAGCTTTTTTCAAATACA+AGG | + | chr3.2:74491342-74491361 | None:intergenic | 20.0% |
| !!! | ATTCACAATTTTCATAACAA+AGG | + | chr3.2:74491494-74491513 | None:intergenic | 20.0% |
| !!! | GTAAAATTTAAGTCTGTTTT+TGG | - | chr3.2:74492708-74492727 | MS.gene052209:intron | 20.0% |
| ! | AAAAGAAACAAATGGACAAA+TGG | + | chr3.2:74492938-74492957 | None:intergenic | 25.0% |
| ! | AAAGAAACAAATGGACAAAT+GGG | + | chr3.2:74492937-74492956 | None:intergenic | 25.0% |
| ! | AACTCGTAAGTCATAAATAT+GGG | + | chr3.2:74493093-74493112 | None:intergenic | 25.0% |
| ! | AATTAAGAAACAGATCTATG+CGG | + | chr3.2:74490819-74490838 | None:intergenic | 25.0% |
| ! | ATGTTTGAAAAATGGCTATA+AGG | + | chr3.2:74491734-74491753 | None:intergenic | 25.0% |
| ! | GCATATATCAGGTTTATATT+TGG | - | chr3.2:74491676-74491695 | MS.gene052209:intron | 25.0% |
| ! | TAACTCGTAAGTCATAAATA+TGG | + | chr3.2:74493094-74493113 | None:intergenic | 25.0% |
| ! | TATAAAATGAAAGAGATGAG+TGG | - | chr3.2:74491579-74491598 | MS.gene052209:intron | 25.0% |
| ! | TTCAAACATCAAATTGAACT+CGG | - | chr3.2:74491745-74491764 | MS.gene052209:intron | 25.0% |
| ! | TTTAGTTGAATCAAGATTAG+TGG | - | chr3.2:74490981-74491000 | MS.gene052209:intron | 25.0% |
| !! | AAAAAAATCTGAAACAAACG+GGG | - | chr3.2:74491468-74491487 | MS.gene052209:intron | 25.0% |
| !! | AAAACTATTTTCTCACAAAC+TGG | + | chr3.2:74493051-74493070 | None:intergenic | 25.0% |
| !! | AGTTTTTGAATTAACAGAAC+CGG | + | chr3.2:74491649-74491668 | None:intergenic | 25.0% |
| !! | ATTTGGTAAAAGCTACATTT+TGG | + | chr3.2:74492856-74492875 | None:intergenic | 25.0% |
| !! | GAAAAAAATCTGAAACAAAC+GGG | - | chr3.2:74491467-74491486 | MS.gene052209:intron | 25.0% |
| !!! | ATTTTTATTTTTTTGGGGTG+GGG | - | chr3.2:74492406-74492425 | MS.gene052209:intron | 25.0% |
| !!! | CATTTTTATTTTTTTGGGGT+GGG | - | chr3.2:74492405-74492424 | MS.gene052209:intron | 25.0% |
| !!! | CTCTAAAATGAAAAGCTATA+AGG | + | chr3.2:74491365-74491384 | None:intergenic | 25.0% |
| !!! | GAATTAAAGAAAGTGTTTTC+AGG | - | chr3.2:74490906-74490925 | MS.gene052209:intron | 25.0% |
| !!! | TCATTTTTATTTTTTTGGGG+TGG | - | chr3.2:74492404-74492423 | MS.gene052209:intron | 25.0% |
| !!! | TGTCTTTGAAATTTCTATGA+TGG | - | chr3.2:74492664-74492683 | MS.gene052209:intron | 25.0% |
| AAGACAATGTAACAAACTGA+TGG | + | chr3.2:74492650-74492669 | None:intergenic | 30.0% | |
| AAGATTCAGGTAGTTGTTAA+TGG | + | chr3.2:74492299-74492318 | None:intergenic | 30.0% | |
| ACTCGTAAGTCATAAATATG+GGG | + | chr3.2:74493092-74493111 | None:intergenic | 30.0% | |
| AGTAAAGATCTGATCTGAAA+AGG | + | chr3.2:74490736-74490755 | None:intergenic | 30.0% | |
| CTCACTGGAAATGATATATT+TGG | - | chr3.2:74491999-74492018 | MS.gene052209:CDS | 30.0% | |
| GAAAATTGTGAATCTAAGCT+AGG | - | chr3.2:74491501-74491520 | MS.gene052209:intron | 30.0% | |
| GGGCAAAGTAATATCTTATT+TGG | - | chr3.2:74493160-74493179 | MS.gene052209:intron | 30.0% | |
| TAAGATGTGTGTGTTATGTT+TGG | - | chr3.2:74492778-74492797 | MS.gene052209:intron | 30.0% | |
| TTATCGATATGAATTGAGCT+AGG | - | chr3.2:74492254-74492273 | MS.gene052209:intron | 30.0% | |
| TTCTAATGTAAGTGTCTTCT+AGG | - | chr3.2:74492136-74492155 | MS.gene052209:intron | 30.0% | |
| ! | TCAGGCAATAATATTTTCCA+TGG | - | chr3.2:74493241-74493260 | MS.gene052209:CDS | 30.0% |
| ! | TGTAGCTTTTACCAAATTCT+TGG | - | chr3.2:74492859-74492878 | MS.gene052209:intron | 30.0% |
| !! | AAATGAAAGTACGTACCTTT+TGG | + | chr3.2:74490702-74490721 | None:intergenic | 30.0% |
| !! | TGGCTTCAATTTAATTTGAC+AGG | + | chr3.2:74492599-74492618 | None:intergenic | 30.0% |
| !!! | AGCTTTTTTCAAATACAAGG+AGG | + | chr3.2:74491339-74491358 | None:intergenic | 30.0% |
| !!! | TTTTTATTTTTTTGGGGTGG+GGG | - | chr3.2:74492407-74492426 | MS.gene052209:intron | 30.0% |
| AACAACTACCTGAATCTTAG+TGG | - | chr3.2:74492301-74492320 | MS.gene052209:CDS | 35.0% | |
| AACTAGCATACGCATATATC+AGG | - | chr3.2:74491665-74491684 | MS.gene052209:intron | 35.0% | |
| AAGATCTGATCTGAAAAGGA+AGG | + | chr3.2:74490732-74490751 | None:intergenic | 35.0% | |
| AAGCTCAATCTCTTTCCAAA+AGG | - | chr3.2:74490684-74490703 | MS.gene052209:CDS | 35.0% | |
| AATATCAAATGCCAAGACCA+AGG | - | chr3.2:74491974-74491993 | MS.gene052209:CDS | 35.0% | |
| ACACATTCACGTAGTTAACA+TGG | + | chr3.2:74491108-74491127 | None:intergenic | 35.0% | |
| ATAAGCAGTAGGTACTTTGT+AGG | + | chr3.2:74492995-74493014 | None:intergenic | 35.0% | |
| ATGCAATCTGCAATCTTATG+TGG | - | chr3.2:74490958-74490977 | MS.gene052209:intron | 35.0% | |
| CTACAATTACAGGAAAAGGA+AGG | + | chr3.2:74493131-74493150 | None:intergenic | 35.0% | |
| CTTAGGACTAACACTTTCTT+CGG | + | chr3.2:74491868-74491887 | None:intergenic | 35.0% | |
| GAAATCAAAGACCCTGTTAA+AGG | - | chr3.2:74493355-74493374 | MS.gene052209:CDS | 35.0% | |
| GAGATTGACGAAATCACAAT+TGG | + | chr3.2:74492888-74492907 | None:intergenic | 35.0% | |
| GATCGAAGAACGATCAAAAA+AGG | + | chr3.2:74490771-74490790 | None:intergenic | 35.0% | |
| GTGTGTTATGTTTGGATTGA+CGG | - | chr3.2:74492786-74492805 | MS.gene052209:intron | 35.0% | |
| TGTTGAGCTAAATAAGCAGT+AGG | + | chr3.2:74493006-74493025 | None:intergenic | 35.0% | |
| TTCTTTGATGTCTTCTCAAC+AGG | + | chr3.2:74493193-74493212 | None:intergenic | 35.0% | |
| ! | AGCTTTTACCAAATTCTTGG+TGG | - | chr3.2:74492862-74492881 | MS.gene052209:intron | 35.0% |
| ! | CATGGTATATTTTCGGACAA+TGG | - | chr3.2:74491603-74491622 | MS.gene052209:intron | 35.0% |
| ! | CTATTTTCTCACAAACTGGA+CGG | + | chr3.2:74493047-74493066 | None:intergenic | 35.0% |
| ! | GAGTGGACATGGTATATTTT+CGG | - | chr3.2:74491596-74491615 | MS.gene052209:intron | 35.0% |
| ! | TTAACAGGGTCTTTGATTTC+TGG | + | chr3.2:74493355-74493374 | None:intergenic | 35.0% |
| ! | TTCATTTTATACCCTGAGCA+TGG | + | chr3.2:74491570-74491589 | None:intergenic | 35.0% |
| ! | TTTGGAATCAAAGGAAAGCA+AGG | - | chr3.2:74492067-74492086 | MS.gene052209:CDS | 35.0% |
| !!! | AAGATTTTAGTTTGGGGGTT+GGG | - | chr3.2:74492439-74492458 | MS.gene052209:intron | 35.0% |
| !!! | AGGGGGTAAGATTTTAGTTT+GGG | - | chr3.2:74492432-74492451 | MS.gene052209:intron | 35.0% |
| !!! | TAAGATTTTAGTTTGGGGGT+TGG | - | chr3.2:74492438-74492457 | MS.gene052209:intron | 35.0% |
| !!! | TAAGTCTGTTTTTGGGTGTT+GGG | - | chr3.2:74492716-74492735 | MS.gene052209:intron | 35.0% |
| !!! | TAGGGGGTAAGATTTTAGTT+TGG | - | chr3.2:74492431-74492450 | MS.gene052209:intron | 35.0% |
| !!! | TTAAGTCTGTTTTTGGGTGT+TGG | - | chr3.2:74492715-74492734 | MS.gene052209:intron | 35.0% |
| AACCTCTTCCCAGAAATTTG+AGG | - | chr3.2:74492099-74492118 | MS.gene052209:intron | 40.0% | |
| AATGGGACTGAGAACTTGAT+TGG | + | chr3.2:74492920-74492939 | None:intergenic | 40.0% | |
| ACAATTGGCCACCAAGAATT+TGG | + | chr3.2:74492873-74492892 | None:intergenic | 40.0% | |
| ACCGATGTCCTCAAATTTCT+GGG | + | chr3.2:74492110-74492129 | None:intergenic | 40.0% | |
| ATCAAAGGAAAGCAAGGACA+TGG | - | chr3.2:74492073-74492092 | MS.gene052209:CDS | 40.0% | |
| ATCGTTGGATTGAGATCAGA+CGG | + | chr3.2:74491080-74491099 | None:intergenic | 40.0% | |
| ATGAAAGAGATGAGTGGACA+TGG | - | chr3.2:74491585-74491604 | MS.gene052209:intron | 40.0% | |
| ATGGCTATAAGGTCTCAAAC+TGG | + | chr3.2:74491723-74491742 | None:intergenic | 40.0% | |
| ATTCATCGCCACTAAGATTC+AGG | + | chr3.2:74492312-74492331 | None:intergenic | 40.0% | |
| CAGGCTACAATTACAGGAAA+AGG | + | chr3.2:74493135-74493154 | None:intergenic | 40.0% | |
| CAGTTTACCTTATGCTTTCC+TGG | - | chr3.2:74492352-74492371 | MS.gene052209:CDS | 40.0% | |
| CGGTGAGTTTGGTAAAATCA+CGG | - | chr3.2:74492806-74492825 | MS.gene052209:intron | 40.0% | |
| GCAAAGCTGAGAGAAATAAC+TGG | - | chr3.2:74493304-74493323 | MS.gene052209:CDS | 40.0% | |
| GCATCTCAGCAAGCAATAAA+TGG | - | chr3.2:74491819-74491838 | MS.gene052209:CDS | 40.0% | |
| GTGTAAGATGTCCACAAGAT+TGG | + | chr3.2:74492539-74492558 | None:intergenic | 40.0% | |
| GTTAACATGGATGTGATCGT+TGG | + | chr3.2:74491095-74491114 | None:intergenic | 40.0% | |
| TAATACTGTTGCAGCACATG+AGG | - | chr3.2:74492512-74492531 | MS.gene052209:intron | 40.0% | |
| TCAAACTGGACTCAAGATCA+AGG | + | chr3.2:74491709-74491728 | None:intergenic | 40.0% | |
| TCAAAGGAAAGCAAGGACAT+GGG | - | chr3.2:74492074-74492093 | MS.gene052209:CDS | 40.0% | |
| TCCCAGAAATTTGAGGACAT+CGG | - | chr3.2:74492106-74492125 | MS.gene052209:intron | 40.0% | |
| TGTGAATCTAAGCTAGGAGA+TGG | - | chr3.2:74491507-74491526 | MS.gene052209:intron | 40.0% | |
| ! | CAGGAAAGCATAAGGTAAAC+TGG | + | chr3.2:74492354-74492373 | None:intergenic | 40.0% |
| ! | GAAAGCATAAGGTAAACTGG+TGG | + | chr3.2:74492351-74492370 | None:intergenic | 40.0% |
| ! | TAACAAACTGATGGACCTTC+CGG | + | chr3.2:74492641-74492660 | None:intergenic | 40.0% |
| ! | TTGCATTCCAGGAAAGCATA+AGG | + | chr3.2:74492362-74492381 | None:intergenic | 40.0% |
| !! | ACCTTGCTGATTCTATCAGA+AGG | + | chr3.2:74490635-74490654 | None:intergenic | 40.0% |
| !! | TGCACGAACTTTGGAATCAA+AGG | - | chr3.2:74492058-74492077 | MS.gene052209:CDS | 40.0% |
| !!! | AAGTCTGTTTTTGGGTGTTG+GGG | - | chr3.2:74492717-74492736 | MS.gene052209:intron | 40.0% |
| !!! | AGATTTTAGTTTGGGGGTTG+GGG | - | chr3.2:74492440-74492459 | MS.gene052209:intron | 40.0% |
| !!! | GGGGGTAAGATTTTAGTTTG+GGG | - | chr3.2:74492433-74492452 | MS.gene052209:intron | 40.0% |
| !!! | GGGGTAAGATTTTAGTTTGG+GGG | - | chr3.2:74492434-74492453 | MS.gene052209:intron | 40.0% |
| AACTGCACATGCATTGCATC+CGG | - | chr3.2:74492619-74492638 | MS.gene052209:intron | 45.0% | |
| AGCTGAAAAATCCCTGAGCA+GGG | - | chr3.2:74493282-74493301 | MS.gene052209:CDS | 45.0% | |
| ATATTACTTTGCCCACCAGC+AGG | + | chr3.2:74493154-74493173 | None:intergenic | 45.0% | |
| ATCATTTCCAGTGAGCTCCT+TGG | + | chr3.2:74491994-74492013 | None:intergenic | 45.0% | |
| ATGGAACGCGGTACAATTTC+AGG | + | chr3.2:74492032-74492051 | None:intergenic | 45.0% | |
| CACCGATGTCCTCAAATTTC+TGG | + | chr3.2:74492111-74492130 | None:intergenic | 45.0% | |
| CAGAAGTTTGCAGAGCTTTC+AGG | - | chr3.2:74493223-74493242 | MS.gene052209:intron | 45.0% | |
| CAGGAAAAGGAAGGTTAACC+TGG | + | chr3.2:74493122-74493141 | None:intergenic | 45.0% | |
| CTCACAAACTGGACGGTTTA+AGG | + | chr3.2:74493040-74493059 | None:intergenic | 45.0% | |
| CTGAAAGCTCTGCAAACTTC+TGG | + | chr3.2:74493225-74493244 | None:intergenic | 45.0% | |
| CTTTGCTACCTCAGGTATAG+AGG | + | chr3.2:74491898-74491917 | None:intergenic | 45.0% | |
| GAAGATTCTGCATCAGAAGC+CGG | - | chr3.2:74491627-74491646 | MS.gene052209:intron | 45.0% | |
| GACAGGCACATGTTAAGAGA+AGG | + | chr3.2:74492582-74492601 | None:intergenic | 45.0% | |
| GATGCAATGCATGTGCAGTT+TGG | + | chr3.2:74492619-74492638 | None:intergenic | 45.0% | |
| GCATAAGGTAAACTGGTGGA+TGG | + | chr3.2:74492347-74492366 | None:intergenic | 45.0% | |
| GCCTTCTGATAGAATCAGCA+AGG | - | chr3.2:74490631-74490650 | MS.gene052209:CDS | 45.0% | |
| GGTATAGAGGTAGGCTTCTT+AGG | + | chr3.2:74491885-74491904 | None:intergenic | 45.0% | |
| GTTTGGATTGACGGTGAGTT+TGG | - | chr3.2:74492795-74492814 | MS.gene052209:intron | 45.0% | |
| TGAAATTGTACCGCGTTCCA+TGG | - | chr3.2:74492031-74492050 | MS.gene052209:CDS | 45.0% | |
| TGGGACTTTGCAAACTGACT+TGG | - | chr3.2:74491932-74491951 | MS.gene052209:CDS | 45.0% | |
| TGTAATTGTAGCCTGCTGGT+GGG | - | chr3.2:74493140-74493159 | MS.gene052209:intron | 45.0% | |
| TTCCTGTAATTGTAGCCTGC+TGG | - | chr3.2:74493136-74493155 | MS.gene052209:intron | 45.0% | |
| TTGGTGTGTGTCTTTCTCAC+CGG | + | chr3.2:74490533-74490552 | None:intergenic | 45.0% | |
| ! | GGCAGTGACATATTTGCTGA+TGG | - | chr3.2:74493325-74493344 | MS.gene052209:CDS | 45.0% |
| ! | GTAAACTGGTGGATGGTCAA+GGG | + | chr3.2:74492340-74492359 | None:intergenic | 45.0% |
| ! | GTCCTCAAATTTCTGGGAAG+AGG | + | chr3.2:74492104-74492123 | None:intergenic | 45.0% |
| !! | GATTTTTCAGCTGATCCTGC+TGG | + | chr3.2:74493274-74493293 | None:intergenic | 45.0% |
| !!! | AGTCTGTTTTTGGGTGTTGG+GGG | - | chr3.2:74492718-74492737 | MS.gene052209:intron | 45.0% |
| !!! | ATTTTAGTTTGGGGGTTGGG+GGG | - | chr3.2:74492442-74492461 | MS.gene052209:intron | 45.0% |
| !!! | ATTTTTTTGGGGTGGGGGTT+AGG | - | chr3.2:74492412-74492431 | MS.gene052209:intron | 45.0% |
| !!! | GATTTTAGTTTGGGGGTTGG+GGG | - | chr3.2:74492441-74492460 | MS.gene052209:intron | 45.0% |
| !!! | TTTTTTTGGGGTGGGGGTTA+GGG | - | chr3.2:74492413-74492432 | MS.gene052209:intron | 45.0% |
| ACACTTCCGATCTCCTCACT+TGG | - | chr3.2:74490552-74490571 | MS.gene052209:CDS | 50.0% | |
| ACTTTCAGCAAGCCATGCTC+AGG | - | chr3.2:74491555-74491574 | MS.gene052209:intron | 50.0% | |
| ATCCTGCTGGAACATCTCCA+TGG | + | chr3.2:74493261-74493280 | None:intergenic | 50.0% | |
| CAAAGCAGCGTGAACTGAGT+GGG | - | chr3.2:74491913-74491932 | MS.gene052209:CDS | 50.0% | |
| CACCAGCAGGCTACAATTAC+AGG | + | chr3.2:74493141-74493160 | None:intergenic | 50.0% | |
| CAGCTGAAAAATCCCTGAGC+AGG | - | chr3.2:74493281-74493300 | MS.gene052209:CDS | 50.0% | |
| CTGTAATTGTAGCCTGCTGG+TGG | - | chr3.2:74493139-74493158 | MS.gene052209:intron | 50.0% | |
| CTTTCAGCAAGCCATGCTCA+GGG | - | chr3.2:74491556-74491575 | MS.gene052209:intron | 50.0% | |
| GAACGCGGTACAATTTCAGG+AGG | + | chr3.2:74492029-74492048 | None:intergenic | 50.0% | |
| GAAGCCTACCTCTATACCTG+AGG | - | chr3.2:74491887-74491906 | MS.gene052209:CDS | 50.0% | |
| GAATCAACAACAACGGGAGG+AGG | + | chr3.2:74490590-74490609 | None:intergenic | 50.0% | |
| GACTTACGAGTTACGACTCC+AGG | - | chr3.2:74493101-74493120 | MS.gene052209:intron | 50.0% | |
| GAGCTTCTTCTTCAGTGAGC+TGG | + | chr3.2:74490670-74490689 | None:intergenic | 50.0% | |
| GAGGAATCAACAACAACGGG+AGG | + | chr3.2:74490593-74490612 | None:intergenic | 50.0% | |
| GCACATGAGGACCAATCTTG+TGG | - | chr3.2:74492525-74492544 | MS.gene052209:intron | 50.0% | |
| GCGGAGGAATCAACAACAAC+GGG | + | chr3.2:74490596-74490615 | None:intergenic | 50.0% | |
| GCGGTACAATTTCAGGAGGA+GGG | + | chr3.2:74492025-74492044 | None:intergenic | 50.0% | |
| GCTACCTCAGGTATAGAGGT+AGG | + | chr3.2:74491894-74491913 | None:intergenic | 50.0% | |
| GGCGGAGGAATCAACAACAA+CGG | + | chr3.2:74490597-74490616 | None:intergenic | 50.0% | |
| GTTTGCGGGCACCTTTAACA+GGG | + | chr3.2:74493369-74493388 | None:intergenic | 50.0% | |
| TATCAGAAGGCTGACGAGAG+CGG | + | chr3.2:74490622-74490641 | None:intergenic | 50.0% | |
| TTCCATGGAGATGTTCCAGC+AGG | - | chr3.2:74493256-74493275 | MS.gene052209:CDS | 50.0% | |
| TTCCGACCAAGTGAGGAGAT+CGG | + | chr3.2:74490561-74490580 | None:intergenic | 50.0% | |
| TTCCGATCTCCTCACTTGGT+CGG | - | chr3.2:74490556-74490575 | MS.gene052209:CDS | 50.0% | |
| ! | AGTGAGGAGATCGGAAGTGT+TGG | + | chr3.2:74490552-74490571 | None:intergenic | 50.0% |
| ! | GGTAAACTGGTGGATGGTCA+AGG | + | chr3.2:74492341-74492360 | None:intergenic | 50.0% |
| !!! | TGTTTTTGGGTGTTGGGGGT+GGG | - | chr3.2:74492722-74492741 | MS.gene052209:intron | 50.0% |
| !!! | TTTTTTGGGGTGGGGGTTAG+GGG | - | chr3.2:74492414-74492433 | MS.gene052209:intron | 50.0% |
| AATGCTGCTGTCTCCACCAG+GGG | + | chr3.2:74493392-74493411 | None:intergenic | 55.0% | |
| ATCAGAAGGCTGACGAGAGC+GGG | + | chr3.2:74490621-74490640 | None:intergenic | 55.0% | |
| CAAAGTTCGTGCAGCTGCCA+TGG | + | chr3.2:74492051-74492070 | None:intergenic | 55.0% | |
| CAATGCTGCTGTCTCCACCA+GGG | + | chr3.2:74493393-74493412 | None:intergenic | 55.0% | |
| CATGGCAGCTGCACGAACTT+TGG | - | chr3.2:74492049-74492068 | MS.gene052209:CDS | 55.0% | |
| CGCGGTACAATTTCAGGAGG+AGG | + | chr3.2:74492026-74492045 | None:intergenic | 55.0% | |
| GAGGAACTTCCGACCAAGTG+AGG | + | chr3.2:74490568-74490587 | None:intergenic | 55.0% | |
| GCAAAGCAGCGTGAACTGAG+TGG | - | chr3.2:74491912-74491931 | MS.gene052209:CDS | 55.0% | |
| GCACATGCATTGCATCCGGA+AGG | - | chr3.2:74492623-74492642 | MS.gene052209:intron | 55.0% | |
| GGTTTGCGGGCACCTTTAAC+AGG | + | chr3.2:74493370-74493389 | None:intergenic | 55.0% | |
| TCAACAACAACGGGAGGAGG+AGG | + | chr3.2:74490587-74490606 | None:intergenic | 55.0% | |
| TCCAGTGAGCTCCTTGGTCT+TGG | + | chr3.2:74491988-74492007 | None:intergenic | 55.0% | |
| TCTCAGCTTTGCCCTGCTCA+GGG | + | chr3.2:74493296-74493315 | None:intergenic | 55.0% | |
| ! | TCACGCTGCTTTGCTACCTC+AGG | + | chr3.2:74491906-74491925 | None:intergenic | 55.0% |
| !!! | CTGTTTTTGGGTGTTGGGGG+TGG | - | chr3.2:74492721-74492740 | MS.gene052209:intron | 55.0% |
| !!! | GTTTTTGGGTGTTGGGGGTG+GGG | - | chr3.2:74492723-74492742 | MS.gene052209:intron | 55.0% |
| !!! | TTTTTGGGGTGGGGGTTAGG+GGG | - | chr3.2:74492415-74492434 | MS.gene052209:intron | 55.0% |
| ATGCTGCTGTCTCCACCAGG+GGG | + | chr3.2:74493391-74493410 | None:intergenic | 60.0% | |
| CTCTCAGCTTTGCCCTGCTC+AGG | + | chr3.2:74493297-74493316 | None:intergenic | 60.0% | |
| GCAATGCTGCTGTCTCCACC+AGG | + | chr3.2:74493394-74493413 | None:intergenic | 60.0% | |
| GCCAAGACCAAGGAGCTCAC+TGG | - | chr3.2:74491984-74492003 | MS.gene052209:CDS | 60.0% | |
| TGTCTCCACCAGGGGGTTTG+CGG | + | chr3.2:74493384-74493403 | None:intergenic | 60.0% | |
| AGAAGGCTGACGAGAGCGGG+TGG | + | chr3.2:74490618-74490637 | None:intergenic | 65.0% | |
| CGTGCAGCTGCCATGGAACG+CGG | + | chr3.2:74492044-74492063 | None:intergenic | 65.0% | |
| GTCTCCACCAGGGGGTTTGC+GGG | + | chr3.2:74493383-74493402 | None:intergenic | 65.0% | |
| !! | AAAGGTGCCCGCAAACCCCC+TGG | - | chr3.2:74493373-74493392 | MS.gene052209:CDS | 65.0% |
| AGGCTGACGAGAGCGGGTGG+CGG | + | chr3.2:74490615-74490634 | None:intergenic | 70.0% | |
| GGTGCCCGCAAACCCCCTGG+TGG | - | chr3.2:74493376-74493395 | MS.gene052209:CDS | 75.0% | |
| ! | CTGACGAGAGCGGGTGGCGG+AGG | + | chr3.2:74490612-74490631 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 74490518 | 74493423 | 74490518 | ID=MS.gene052209 |
| chr3.2 | mRNA | 74490518 | 74493423 | 74490518 | ID=MS.gene052209.t1;Parent=MS.gene052209 |
| chr3.2 | exon | 74493236 | 74493423 | 74493236 | ID=MS.gene052209.t1.exon1;Parent=MS.gene052209.t1 |
| chr3.2 | CDS | 74493236 | 74493423 | 74493236 | ID=cds.MS.gene052209.t1;Parent=MS.gene052209.t1 |
| chr3.2 | exon | 74492255 | 74492378 | 74492255 | ID=MS.gene052209.t1.exon2;Parent=MS.gene052209.t1 |
| chr3.2 | CDS | 74492255 | 74492378 | 74492255 | ID=cds.MS.gene052209.t1;Parent=MS.gene052209.t1 |
| chr3.2 | exon | 74491799 | 74492113 | 74491799 | ID=MS.gene052209.t1.exon3;Parent=MS.gene052209.t1 |
| chr3.2 | CDS | 74491799 | 74492113 | 74491799 | ID=cds.MS.gene052209.t1;Parent=MS.gene052209.t1 |
| chr3.2 | exon | 74490518 | 74490790 | 74490518 | ID=MS.gene052209.t1.exon4;Parent=MS.gene052209.t1 |
| chr3.2 | CDS | 74490518 | 74490790 | 74490518 | ID=cds.MS.gene052209.t1;Parent=MS.gene052209.t1 |
| Gene Sequence |
| Protein sequence |
