Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47724.t1 | XP_003617362.1 | 89.2 | 594 | 26 | 1 | 1 | 556 | 1 | 594 | 3.70E-258 | 900.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47724.t1 | E7BQV0 | 55.3 | 528 | 194 | 4 | 65 | 554 | 61 | 584 | 7.5e-151 | 535.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47724.t1 | G7K396 | 89.2 | 594 | 26 | 1 | 1 | 556 | 1 | 594 | 2.6e-258 | 900.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene47724 | 0.820208 | 7.74E-53 | -1.69E-46 |
| MS.gene057329 | MS.gene47724 | 0.804911 | 1.72E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene47724 | 0.831913 | 1.27E-55 | -1.69E-46 |
| MS.gene060697 | MS.gene47724 | 0.829735 | 4.36E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47724.t1 | MTR_5g090770 | 89.394 | 594 | 25 | 1 | 1 | 556 | 1 | 594 | 0.0 | 1023 |
| MS.gene47724.t1 | MTR_5g090770 | 87.528 | 441 | 17 | 1 | 1 | 403 | 1 | 441 | 0.0 | 749 |
| MS.gene47724.t1 | MTR_2g028950 | 56.806 | 551 | 191 | 5 | 18 | 527 | 19 | 563 | 0.0 | 613 |
| MS.gene47724.t1 | MTR_2g028950 | 54.898 | 490 | 174 | 5 | 18 | 466 | 19 | 502 | 4.80e-179 | 514 |
| MS.gene47724.t1 | MTR_2g039880 | 37.679 | 560 | 297 | 11 | 10 | 527 | 6 | 555 | 4.01e-107 | 333 |
| MS.gene47724.t1 | MTR_7g090020 | 33.010 | 309 | 187 | 7 | 80 | 370 | 80 | 386 | 2.52e-42 | 158 |
| MS.gene47724.t1 | MTR_1g051025 | 32.792 | 308 | 188 | 6 | 80 | 370 | 80 | 385 | 1.76e-41 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47724.t1 | AT5G45110 | 49.716 | 529 | 214 | 6 | 42 | 524 | 35 | 557 | 5.33e-172 | 499 |
| MS.gene47724.t1 | AT4G19660 | 48.713 | 544 | 214 | 9 | 33 | 524 | 20 | 550 | 1.08e-166 | 486 |
| MS.gene47724.t1 | AT4G19660 | 46.410 | 571 | 214 | 10 | 33 | 524 | 20 | 577 | 2.24e-160 | 470 |
| MS.gene47724.t1 | AT5G45110 | 48.394 | 467 | 193 | 5 | 42 | 466 | 35 | 495 | 4.19e-145 | 428 |
| MS.gene47724.t1 | AT4G26120 | 40.546 | 476 | 259 | 9 | 86 | 552 | 122 | 582 | 6.13e-105 | 328 |
| MS.gene47724.t1 | AT4G26120 | 40.546 | 476 | 259 | 9 | 86 | 552 | 123 | 583 | 9.96e-105 | 327 |
| MS.gene47724.t1 | AT1G64280 | 40.798 | 451 | 247 | 6 | 86 | 527 | 123 | 562 | 2.67e-103 | 323 |
| MS.gene47724.t1 | AT2G41370 | 33.657 | 309 | 187 | 7 | 77 | 370 | 86 | 391 | 1.30e-44 | 165 |
| MS.gene47724.t1 | AT3G57130 | 32.673 | 303 | 190 | 7 | 80 | 370 | 84 | 384 | 1.03e-42 | 159 |
Find 91 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGATTGTAATCTTAAT+TGG | 0.155412 | 5.3:-73006374 | None:intergenic |
| GAGCCTTGTCAACAAAATTT+AGG | 0.226635 | 5.3:-73005125 | None:intergenic |
| TGACATGGACATCATATATT+TGG | 0.235777 | 5.3:+73005239 | MS.gene47724:CDS |
| TTTGTATACTGGAAAGTTAA+AGG | 0.276961 | 5.3:+73004275 | MS.gene47724:CDS |
| TTCTTGCATTATTTGTATAC+TGG | 0.287135 | 5.3:+73004264 | MS.gene47724:CDS |
| TGATGTGCAGCCATTAAAAT+TGG | 0.325931 | 5.3:-73005165 | None:intergenic |
| ATGAAAGATTTGGTGCCTTA+TGG | 0.340611 | 5.3:+73004213 | MS.gene47724:intron |
| TTGTGCATATTGTGATTCTA+AGG | 0.357367 | 5.3:+73005485 | MS.gene47724:CDS |
| CATTGCCACATGTTCATTGT+TGG | 0.365929 | 5.3:-73003968 | None:intergenic |
| GCATCAGAAACCACTCTTGA+TGG | 0.370481 | 5.3:+73005642 | MS.gene47724:CDS |
| GTTCAAGAAGTTCTTACTCT+TGG | 0.391310 | 5.3:+73005510 | MS.gene47724:CDS |
| AACGAAGAAAGCACGGTTCA+TGG | 0.394343 | 5.3:+73006632 | MS.gene47724:CDS |
| ATCTGCCCCAGCATTCTCTA+TGG | 0.400544 | 5.3:-73006259 | None:intergenic |
| CGTCAGAGTCCAATGCCTTA+AGG | 0.406730 | 5.3:-73005389 | None:intergenic |
| TGCAAGTTCAACAGCTTTGA+AGG | 0.409850 | 5.3:+73006296 | MS.gene47724:CDS |
| GGTTCCACTTCCATTGCATC+TGG | 0.423349 | 5.3:-73005333 | None:intergenic |
| ATTGCATCTGGTGTTGATTC+CGG | 0.423636 | 5.3:-73005321 | None:intergenic |
| GAAGGCATTTCACAAGGATA+TGG | 0.425039 | 5.3:+73006674 | MS.gene47724:CDS |
| CTTCTTCCGTTCCCTTCTCT+AGG | 0.435165 | 5.3:-73006602 | None:intergenic |
| GTGTTGATTCCGGCAGAGAT+TGG | 0.467675 | 5.3:-73005311 | None:intergenic |
| TGTTCTTTCCTGCTGAGGCA+AGG | 0.476184 | 5.3:+73006232 | MS.gene47724:CDS |
| TGTATCCACGAGGATTCTTA+AGG | 0.478040 | 5.3:-73005548 | None:intergenic |
| ATGGCTACCCTTGCCTCAGC+AGG | 0.479921 | 5.3:-73006240 | None:intergenic |
| AGAAGTTCTTACTCTTGGAT+TGG | 0.484032 | 5.3:+73005515 | MS.gene47724:CDS |
| CTCTTATCATTCACAGTCAC+AGG | 0.484685 | 5.3:-73005354 | None:intergenic |
| GTTCTTTCCTGCTGAGGCAA+GGG | 0.487551 | 5.3:+73006233 | MS.gene47724:CDS |
| CTGTGAATGATAAGAGTGTC+AGG | 0.490919 | 5.3:+73005361 | MS.gene47724:CDS |
| GAGTGTCAGGAAAATCCTTA+AGG | 0.494210 | 5.3:+73005374 | MS.gene47724:CDS |
| CACATGTTCATTGTTGGTTG+AGG | 0.498708 | 5.3:-73003962 | None:intergenic |
| CAGGAAAATCCTTAAGGCAT+TGG | 0.500644 | 5.3:+73005380 | MS.gene47724:CDS |
| GGGTAGCCATAGAGAATGCT+GGG | 0.504854 | 5.3:+73006253 | MS.gene47724:CDS |
| CCTCCGAGTCCAATCTCTGC+CGG | 0.505391 | 5.3:+73005302 | MS.gene47724:CDS |
| AAGCTCTTTCATCTGAAAAG+TGG | 0.506831 | 5.3:-73004397 | None:intergenic |
| AGGGTAGCCATAGAGAATGC+TGG | 0.515215 | 5.3:+73006252 | MS.gene47724:CDS |
| TTTCAATAGTGCAACCAAGA+TGG | 0.516370 | 5.3:-73005607 | None:intergenic |
| TGCATTGTCTTCTACATCAT+CGG | 0.516416 | 5.3:+73006725 | MS.gene47724:CDS |
| TACATCATCGGCAAGTCGTA+GGG | 0.521228 | 5.3:+73006737 | MS.gene47724:CDS |
| ACGAAAGGATCCATCCATCT+TGG | 0.521666 | 5.3:+73005593 | MS.gene47724:CDS |
| TCACGTTGCCGCAAGACGAA+AGG | 0.524031 | 5.3:+73005578 | MS.gene47724:CDS |
| GAATGCAATGAGAGAGAAGC+TGG | 0.524808 | 5.3:-73005200 | None:intergenic |
| TCCAAAGCAAAATTGATAGC+AGG | 0.525538 | 5.3:-73004357 | None:intergenic |
| AAGTTCTATGTCAGTGAACA+TGG | 0.525587 | 5.3:+73005791 | MS.gene47724:CDS |
| CTACATCATCGGCAAGTCGT+AGG | 0.526560 | 5.3:+73006736 | MS.gene47724:CDS |
| AAATTGTGTACAGTTGAGAA+TGG | 0.529000 | 5.3:+73006507 | MS.gene47724:intron |
| TGTGTACAGTTGAGAATGGT+AGG | 0.529889 | 5.3:+73006511 | MS.gene47724:intron |
| GGATGGATCCTTTCGTCTTG+CGG | 0.530660 | 5.3:-73005586 | None:intergenic |
| CTGGATTACCTTGAAAATAG+AGG | 0.531111 | 5.3:+73005855 | MS.gene47724:CDS |
| TTGGTGCCTTATGGTAGTGT+TGG | 0.531830 | 5.3:+73004222 | MS.gene47724:CDS |
| TAGGCTGTTCTTTCCTGCTG+AGG | 0.533770 | 5.3:+73006227 | MS.gene47724:CDS |
| AACACCAGATGCAATGGAAG+TGG | 0.536591 | 5.3:+73005329 | MS.gene47724:CDS |
| AATTTCTTCAACAAGAATCT+CGG | 0.543046 | 5.3:-73004076 | None:intergenic |
| GGAAGGAGTCTCACAAGGAT+AGG | 0.544010 | 5.3:+73005733 | MS.gene47724:CDS |
| CTTGTTGAAGAAATTCCTGT+TGG | 0.546823 | 5.3:+73004084 | MS.gene47724:CDS |
| CATGTTGTCACTTCTGTTGG+TGG | 0.549763 | 5.3:-73004300 | None:intergenic |
| ATGTTGCAGTTGCATTTGCT+AGG | 0.553352 | 5.3:+73006208 | MS.gene47724:intron |
| CATCACTCAATAACTTCTCA+AGG | 0.556447 | 5.3:-73004032 | None:intergenic |
| GTATCTAGACGATGATATGC+CGG | 0.557917 | 5.3:+73006569 | MS.gene47724:CDS |
| CGGCAGAGATTGGACTCGGA+GGG | 0.559848 | 5.3:-73005301 | None:intergenic |
| TCAGAGATTGACGAGGCGAA+AGG | 0.561716 | 5.3:+73005686 | MS.gene47724:CDS |
| TCATATCCAACACTACCATA+AGG | 0.563466 | 5.3:-73004228 | None:intergenic |
| ATTCCGGCAGAGATTGGACT+CGG | 0.564498 | 5.3:-73005305 | None:intergenic |
| AGCAGAGAACGAAGAAAGCA+CGG | 0.564815 | 5.3:+73006625 | MS.gene47724:CDS |
| CAAGCACCTCAGAACAATGC+GGG | 0.572417 | 5.3:-73006542 | None:intergenic |
| AATAGTGCAACCAAGATGGA+TGG | 0.572602 | 5.3:-73005603 | None:intergenic |
| ATGGCTGAAAATAACCAAGC+AGG | 0.574550 | 5.3:+73006693 | MS.gene47724:CDS |
| TTGAGATGATACAAAACTCA+AGG | 0.576016 | 5.3:-73003902 | None:intergenic |
| GGAATCAACACCAGATGCAA+TGG | 0.582737 | 5.3:+73005323 | MS.gene47724:CDS |
| TGATGATTTACACATGAGAC+TGG | 0.587404 | 5.3:+73005836 | MS.gene47724:CDS |
| AGCAGTTTGTCCATCAAGAG+TGG | 0.589661 | 5.3:-73005652 | None:intergenic |
| ACTTAAAGATGAGGTGCAGA+AGG | 0.589892 | 5.3:+73006656 | MS.gene47724:CDS |
| CAACAATGAACATGTGGCAA+TGG | 0.591956 | 5.3:+73003969 | MS.gene47724:CDS |
| CAATTTGTCAGAGATTGACG+AGG | 0.597048 | 5.3:+73005679 | MS.gene47724:CDS |
| GCAAGTTCAACAGCTTTGAA+GGG | 0.599785 | 5.3:+73006297 | MS.gene47724:CDS |
| ACACATGTTGTCACTTCTGT+TGG | 0.603901 | 5.3:-73004303 | None:intergenic |
| ATTTCAGTCATAACTTCATG+AGG | 0.607057 | 5.3:-73005273 | None:intergenic |
| GAGAGTCGTAAGGTCTGACA+TGG | 0.616876 | 5.3:+73005224 | MS.gene47724:CDS |
| CTCAACCAACAATGAACATG+TGG | 0.620410 | 5.3:+73003963 | MS.gene47724:CDS |
| TAAGAATCCTCGTGGATACA+CGG | 0.628927 | 5.3:+73005551 | MS.gene47724:CDS |
| ACAAGCATAGTGTAGTGCAT+AGG | 0.635531 | 5.3:-73005466 | None:intergenic |
| GTTCATGGAACTTAAAGATG+AGG | 0.636671 | 5.3:+73006647 | MS.gene47724:CDS |
| AAAGTCTTAACCACAAAGTG+AGG | 0.653570 | 5.3:+73006760 | MS.gene47724:CDS |
| CCGGCAGAGATTGGACTCGG+AGG | 0.654889 | 5.3:-73005302 | None:intergenic |
| GCAGGGGAAGGAGTCTCACA+AGG | 0.661433 | 5.3:+73005728 | MS.gene47724:CDS |
| ATTGCATTCAGAGAGTCGTA+AGG | 0.666386 | 5.3:+73005214 | MS.gene47724:CDS |
| GGTGCAGAAGGCATTTCACA+AGG | 0.668394 | 5.3:+73006668 | MS.gene47724:CDS |
| ATTCTCCTTAAGAATCCTCG+TGG | 0.687759 | 5.3:+73005543 | MS.gene47724:CDS |
| GTGAGTTTGAATAAGCTCAG+TGG | 0.700757 | 5.3:+73004006 | MS.gene47724:CDS |
| TCAAGCACCTCAGAACAATG+CGG | 0.711186 | 5.3:-73006543 | None:intergenic |
| GCTGTTGAACTTGCATAGCG+TGG | 0.711386 | 5.3:-73006288 | None:intergenic |
| GGTAGCCATAGAGAATGCTG+GGG | 0.739957 | 5.3:+73006254 | MS.gene47724:CDS |
| TGAAGAACCGTGTATCCACG+AGG | 0.741022 | 5.3:-73005558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAGCAATAAAAATAA+AGG | - | chr5.3:73004483-73004502 | None:intergenic | 15.0% |
| !!! | AAAGTTTCATGAAAATATTT+TGG | - | chr5.3:73006144-73006163 | None:intergenic | 15.0% |
| !!! | TATTTCAAATTTTATTCACT+TGG | - | chr5.3:73004849-73004868 | None:intergenic | 15.0% |
| !!! | TTTTTATTTATACATTTTGC+AGG | + | chr5.3:73004791-73004810 | MS.gene47724:intron | 15.0% |
| !! | AAAGGATTATCATGAAAAAA+CGG | + | chr5.3:73005704-73005723 | MS.gene47724:CDS | 20.0% |
| !!! | AATACTTAATGAATTGATTC+TGG | - | chr5.3:73006062-73006081 | None:intergenic | 20.0% |
| !!! | TTTCATGAAACTTTTGAATT+TGG | + | chr5.3:73006150-73006169 | MS.gene47724:intron | 20.0% |
| !!! | TTTCATGAACTTTTTAAGAA+AGG | + | chr5.3:73004144-73004163 | MS.gene47724:intron | 20.0% |
| ! | AATTTCTTCAACAAGAATCT+CGG | - | chr5.3:73004079-73004098 | None:intergenic | 25.0% |
| ! | ACATTAGCTCATTTCAAAAA+AGG | - | chr5.3:73005075-73005094 | None:intergenic | 25.0% |
| ! | AGCACATCAAATTTATATGA+AGG | - | chr5.3:73004901-73004920 | None:intergenic | 25.0% |
| ! | ATATAAATTTGATGTGCTGA+CGG | + | chr5.3:73004903-73004922 | MS.gene47724:intron | 25.0% |
| ! | ATCTTTATACGAACATCAAA+TGG | + | chr5.3:73006456-73006475 | MS.gene47724:intron | 25.0% |
| ! | TCAACTGTACACAATTTAAT+TGG | - | chr5.3:73006504-73006523 | None:intergenic | 25.0% |
| ! | TTCTTGCATTATTTGTATAC+TGG | + | chr5.3:73004264-73004283 | MS.gene47724:CDS | 25.0% |
| ! | TTGAATTTGGAAGCTTATTA+TGG | + | chr5.3:73006163-73006182 | MS.gene47724:intron | 25.0% |
| ! | TTTGTATACTGGAAAGTTAA+AGG | + | chr5.3:73004275-73004294 | MS.gene47724:CDS | 25.0% |
| !! | AGATGTCATTCCAATTTTAA+TGG | + | chr5.3:73005155-73005174 | MS.gene47724:CDS | 25.0% |
| !! | TTTATACATTTTGCAGGTTT+TGG | + | chr5.3:73004797-73004816 | MS.gene47724:intron | 25.0% |
| !!! | ATCTGTTTACTTTTGATCTA+GGG | + | chr5.3:73004669-73004688 | MS.gene47724:intron | 25.0% |
| !!! | CAAGTTTTTTTTCTTTCTTC+CGG | - | chr5.3:73005050-73005069 | None:intergenic | 25.0% |
| !!! | CTTTTTAAGAAAGGAAAAGA+TGG | + | chr5.3:73004153-73004172 | MS.gene47724:intron | 25.0% |
| !!! | TATCTGTTTACTTTTGATCT+AGG | + | chr5.3:73004668-73004687 | MS.gene47724:intron | 25.0% |
| !!! | TTCATGAAAATATTTTGGTG+AGG | - | chr5.3:73006139-73006158 | None:intergenic | 25.0% |
| AAATCTTTCATGAGATACCT+TGG | - | chr5.3:73004204-73004223 | None:intergenic | 30.0% | |
| AAATTGTGTACAGTTGAGAA+TGG | + | chr5.3:73006507-73006526 | MS.gene47724:intron | 30.0% | |
| ACTGTACACAATTTAATTGG+AGG | - | chr5.3:73006501-73006520 | None:intergenic | 30.0% | |
| ATTTCAGTCATAACTTCATG+AGG | - | chr5.3:73005276-73005295 | None:intergenic | 30.0% | |
| CAAGATTTCATCACAGAATT+CGG | - | chr5.3:73004624-73004643 | None:intergenic | 30.0% | |
| CAAGGGATTGTAATCTTAAT+TGG | - | chr5.3:73006377-73006396 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATAATAGAA+AGG | + | chr5.3:73004558-73004577 | MS.gene47724:intron | 30.0% | |
| CCTTTCTATTATTCAAGCTT+AGG | - | chr5.3:73004561-73004580 | None:intergenic | 30.0% | |
| GTACAAGAAAATGATGCTTA+AGG | - | chr5.3:73004455-73004474 | None:intergenic | 30.0% | |
| TGACATGGACATCATATATT+TGG | + | chr5.3:73005239-73005258 | MS.gene47724:CDS | 30.0% | |
| TGGTATTCATCGTTGTATAT+TGG | + | chr5.3:73004104-73004123 | MS.gene47724:intron | 30.0% | |
| TTACAATCCCTTGTAAAAAC+AGG | + | chr5.3:73006384-73006403 | MS.gene47724:CDS | 30.0% | |
| TTGAGATGATACAAAACTCA+AGG | - | chr5.3:73003905-73003924 | None:intergenic | 30.0% | |
| TTGGTTGCACTATTGAAAAA+CGG | + | chr5.3:73005612-73005631 | MS.gene47724:CDS | 30.0% | |
| TTGTGCATATTGTGATTCTA+AGG | + | chr5.3:73005485-73005504 | MS.gene47724:CDS | 30.0% | |
| ! | AAGGTATCTCATGAAAGATT+TGG | + | chr5.3:73004203-73004222 | MS.gene47724:intron | 30.0% |
| ! | AGTTTTCTTGTTCTAACAGA+AGG | - | chr5.3:73006354-73006373 | None:intergenic | 30.0% |
| ! | ATATCTTTTTACTGATGCAG+AGG | + | chr5.3:73005097-73005116 | MS.gene47724:intron | 30.0% |
| ! | GTTACTGAATCTTCTTTTAG+AGG | + | chr5.3:73005419-73005438 | MS.gene47724:CDS | 30.0% |
| ! | TCTCCTAAATTTTGTTGACA+AGG | + | chr5.3:73005122-73005141 | MS.gene47724:CDS | 30.0% |
| ! | TTCTTTTCCTTTGTGCTATA+TGG | + | chr5.3:73005018-73005037 | MS.gene47724:intron | 30.0% |
| !! | ACCTCTAGAATCAATTCTAA+AGG | - | chr5.3:73005918-73005937 | None:intergenic | 30.0% |
| !! | GTCACTTGCTATTATACTTT+AGG | + | chr5.3:73006090-73006109 | MS.gene47724:intron | 30.0% |
| !!! | AATGCTTTACGTAGTTTTGT+AGG | - | chr5.3:73004714-73004733 | None:intergenic | 30.0% |
| !!! | GATCATACCTGTTTTTACAA+GGG | - | chr5.3:73006394-73006413 | None:intergenic | 30.0% |
| !!! | TGATCATACCTGTTTTTACA+AGG | - | chr5.3:73006395-73006414 | None:intergenic | 30.0% |
| AAAGATGGAGAAGTTAAGGA+AGG | + | chr5.3:73004168-73004187 | MS.gene47724:intron | 35.0% | |
| AAAGTCTTAACCACAAAGTG+AGG | + | chr5.3:73006760-73006779 | MS.gene47724:CDS | 35.0% | |
| AAGCTCTTTCATCTGAAAAG+TGG | - | chr5.3:73004400-73004419 | None:intergenic | 35.0% | |
| AAGTTCTATGTCAGTGAACA+TGG | + | chr5.3:73005791-73005810 | MS.gene47724:CDS | 35.0% | |
| ACTAATAAGCAACAGCAGAT+TGG | + | chr5.3:73004766-73004785 | MS.gene47724:intron | 35.0% | |
| AGAAGACATCTGAAAAGTTC+AGG | + | chr5.3:73004513-73004532 | MS.gene47724:intron | 35.0% | |
| AGAAGTTCTTACTCTTGGAT+TGG | + | chr5.3:73005515-73005534 | MS.gene47724:CDS | 35.0% | |
| AGGAAAAGATGGAGAAGTTA+AGG | + | chr5.3:73004164-73004183 | MS.gene47724:intron | 35.0% | |
| ATACAACGATGAATACCAAC+AGG | - | chr5.3:73004102-73004121 | None:intergenic | 35.0% | |
| ATTCACTTGGAACATAGATG+AGG | - | chr5.3:73004836-73004855 | None:intergenic | 35.0% | |
| CATCACTCAATAACTTCTCA+AGG | - | chr5.3:73004035-73004054 | None:intergenic | 35.0% | |
| CTGGATTACCTTGAAAATAG+AGG | + | chr5.3:73005855-73005874 | MS.gene47724:CDS | 35.0% | |
| CTTGATAAATACACCAACAC+AGG | - | chr5.3:73004974-73004993 | None:intergenic | 35.0% | |
| CTTGTTGAAGAAATTCCTGT+TGG | + | chr5.3:73004084-73004103 | MS.gene47724:CDS | 35.0% | |
| GAAGACATCTGAAAAGTTCA+GGG | + | chr5.3:73004514-73004533 | MS.gene47724:intron | 35.0% | |
| GGTAGACAAACATGCTTATT+AGG | - | chr5.3:73004880-73004899 | None:intergenic | 35.0% | |
| GTTCAAGAAGTTCTTACTCT+TGG | + | chr5.3:73005510-73005529 | MS.gene47724:CDS | 35.0% | |
| GTTCATGGAACTTAAAGATG+AGG | + | chr5.3:73006647-73006666 | MS.gene47724:CDS | 35.0% | |
| TATCATGAAAAAACGGTGCA+GGG | + | chr5.3:73005711-73005730 | MS.gene47724:CDS | 35.0% | |
| TCATATCCAACACTACCATA+AGG | - | chr5.3:73004231-73004250 | None:intergenic | 35.0% | |
| TCCTTTGTGCTATATGGAAT+AGG | + | chr5.3:73005024-73005043 | MS.gene47724:intron | 35.0% | |
| TGATGATTTACACATGAGAC+TGG | + | chr5.3:73005836-73005855 | MS.gene47724:CDS | 35.0% | |
| TGATGTGCAGCCATTAAAAT+TGG | - | chr5.3:73005168-73005187 | None:intergenic | 35.0% | |
| TGCATTGTCTTCTACATCAT+CGG | + | chr5.3:73006725-73006744 | MS.gene47724:CDS | 35.0% | |
| TTATCATGAAAAAACGGTGC+AGG | + | chr5.3:73005710-73005729 | MS.gene47724:CDS | 35.0% | |
| TTTCAATAGTGCAACCAAGA+TGG | - | chr5.3:73005610-73005629 | None:intergenic | 35.0% | |
| ! | GACAAGTACCTCTATTTTCA+AGG | - | chr5.3:73005866-73005885 | None:intergenic | 35.0% |
| ! | GAGCCTTGTCAACAAAATTT+AGG | - | chr5.3:73005128-73005147 | None:intergenic | 35.0% |
| ! | TCCAAAGCAAAATTGATAGC+AGG | - | chr5.3:73004360-73004379 | None:intergenic | 35.0% |
| ! | TCCTGCTATCAATTTTGCTT+TGG | + | chr5.3:73004356-73004375 | MS.gene47724:CDS | 35.0% |
| !! | ATGAAAGATTTGGTGCCTTA+TGG | + | chr5.3:73004213-73004232 | MS.gene47724:intron | 35.0% |
| !! | GATGTTTTTGTCCTAGAGAA+GGG | + | chr5.3:73006591-73006610 | MS.gene47724:CDS | 35.0% |
| !! | GCCTTTAGAATTGATTCTAG+AGG | + | chr5.3:73005914-73005933 | MS.gene47724:intron | 35.0% |
| !! | TTCTCTAGGACAAAAACATC+CGG | - | chr5.3:73006591-73006610 | None:intergenic | 35.0% |
| !!! | AGAGCTTGCTTTAGTTTTTC+AGG | + | chr5.3:73004413-73004432 | MS.gene47724:CDS | 35.0% |
| AATAGTGCAACCAAGATGGA+TGG | - | chr5.3:73005606-73005625 | None:intergenic | 40.0% | |
| ACAAGCATAGTGTAGTGCAT+AGG | - | chr5.3:73005469-73005488 | None:intergenic | 40.0% | |
| ACTTAAAGATGAGGTGCAGA+AGG | + | chr5.3:73006656-73006675 | MS.gene47724:CDS | 40.0% | |
| ATCATGAAAAAACGGTGCAG+GGG | + | chr5.3:73005712-73005731 | MS.gene47724:CDS | 40.0% | |
| ATGCAGATGAAAAACCTGCT+TGG | - | chr5.3:73006710-73006729 | None:intergenic | 40.0% | |
| ATGGCTGAAAATAACCAAGC+AGG | + | chr5.3:73006693-73006712 | MS.gene47724:CDS | 40.0% | |
| ATGTTGCAGTTGCATTTGCT+AGG | + | chr5.3:73006208-73006227 | MS.gene47724:intron | 40.0% | |
| ATTCTCCTTAAGAATCCTCG+TGG | + | chr5.3:73005543-73005562 | MS.gene47724:CDS | 40.0% | |
| ATTGCATTCAGAGAGTCGTA+AGG | + | chr5.3:73005214-73005233 | MS.gene47724:CDS | 40.0% | |
| CAACAATGAACATGTGGCAA+TGG | + | chr5.3:73003969-73003988 | MS.gene47724:CDS | 40.0% | |
| CAATTTGTCAGAGATTGACG+AGG | + | chr5.3:73005679-73005698 | MS.gene47724:CDS | 40.0% | |
| CAGGAAAATCCTTAAGGCAT+TGG | + | chr5.3:73005380-73005399 | MS.gene47724:CDS | 40.0% | |
| CATTGCCACATGTTCATTGT+TGG | - | chr5.3:73003971-73003990 | None:intergenic | 40.0% | |
| CCAACACAGGAAAACAGATT+TGG | - | chr5.3:73004961-73004980 | None:intergenic | 40.0% | |
| CTCAACCAACAATGAACATG+TGG | + | chr5.3:73003963-73003982 | MS.gene47724:CDS | 40.0% | |
| CTCTTATCATTCACAGTCAC+AGG | - | chr5.3:73005357-73005376 | None:intergenic | 40.0% | |
| GAGTGTCAGGAAAATCCTTA+AGG | + | chr5.3:73005374-73005393 | MS.gene47724:CDS | 40.0% | |
| GCCTATTCCATATAGCACAA+AGG | - | chr5.3:73005028-73005047 | None:intergenic | 40.0% | |
| GGAGAAGTTAAGGAAGGAAA+GGG | + | chr5.3:73004174-73004193 | MS.gene47724:intron | 40.0% | |
| GTATCTAGACGATGATATGC+CGG | + | chr5.3:73006569-73006588 | MS.gene47724:CDS | 40.0% | |
| GTGAGTTTGAATAAGCTCAG+TGG | + | chr5.3:73004006-73004025 | MS.gene47724:CDS | 40.0% | |
| TAAGAATCCTCGTGGATACA+CGG | + | chr5.3:73005551-73005570 | MS.gene47724:CDS | 40.0% | |
| TGAGGTTCTTATGTGTGGAT+TGG | - | chr5.3:73006121-73006140 | None:intergenic | 40.0% | |
| TGGAGAAGTTAAGGAAGGAA+AGG | + | chr5.3:73004173-73004192 | MS.gene47724:intron | 40.0% | |
| TGTATCCACGAGGATTCTTA+AGG | - | chr5.3:73005551-73005570 | None:intergenic | 40.0% | |
| TGTGTACAGTTGAGAATGGT+AGG | + | chr5.3:73006511-73006530 | MS.gene47724:intron | 40.0% | |
| TTGTGCTATATGGAATAGGC+CGG | + | chr5.3:73005028-73005047 | MS.gene47724:intron | 40.0% | |
| TTTGGTGAGGTTCTTATGTG+TGG | - | chr5.3:73006126-73006145 | None:intergenic | 40.0% | |
| ! | ACACATGTTGTCACTTCTGT+TGG | - | chr5.3:73004306-73004325 | None:intergenic | 40.0% |
| ! | CACATGTTCATTGTTGGTTG+AGG | - | chr5.3:73003965-73003984 | None:intergenic | 40.0% |
| ! | CCAAATCTGTTTTCCTGTGT+TGG | + | chr5.3:73004958-73004977 | MS.gene47724:intron | 40.0% |
| ! | TGCAAGTTCAACAGCTTTGA+AGG | + | chr5.3:73006296-73006315 | MS.gene47724:CDS | 40.0% |
| ! | TTTTGTCCTAGAGAAGGGAA+CGG | + | chr5.3:73006596-73006615 | MS.gene47724:CDS | 40.0% |
| !! | ATTGCATCTGGTGTTGATTC+CGG | - | chr5.3:73005324-73005343 | None:intergenic | 40.0% |
| !! | CTGTGAATGATAAGAGTGTC+AGG | + | chr5.3:73005361-73005380 | MS.gene47724:CDS | 40.0% |
| !! | GAAGGCATTTCACAAGGATA+TGG | + | chr5.3:73006674-73006693 | MS.gene47724:CDS | 40.0% |
| !! | GCAAGTTCAACAGCTTTGAA+GGG | + | chr5.3:73006297-73006316 | MS.gene47724:CDS | 40.0% |
| !! | GGATGTTTTTGTCCTAGAGA+AGG | + | chr5.3:73006590-73006609 | MS.gene47724:CDS | 40.0% |
| AACACCAGATGCAATGGAAG+TGG | + | chr5.3:73005329-73005348 | MS.gene47724:CDS | 45.0% | |
| ACGAAAGGATCCATCCATCT+TGG | + | chr5.3:73005593-73005612 | MS.gene47724:CDS | 45.0% | |
| AGAATTCGGCCAAAATGCCT+AGG | - | chr5.3:73004610-73004629 | None:intergenic | 45.0% | |
| AGCAGAGAACGAAGAAAGCA+CGG | + | chr5.3:73006625-73006644 | MS.gene47724:CDS | 45.0% | |
| AGCAGTTTGTCCATCAAGAG+TGG | - | chr5.3:73005655-73005674 | None:intergenic | 45.0% | |
| GAATGCAATGAGAGAGAAGC+TGG | - | chr5.3:73005203-73005222 | None:intergenic | 45.0% | |
| GCATCAGAAACCACTCTTGA+TGG | + | chr5.3:73005642-73005661 | MS.gene47724:CDS | 45.0% | |
| GGAATCAACACCAGATGCAA+TGG | + | chr5.3:73005323-73005342 | MS.gene47724:CDS | 45.0% | |
| TACATCATCGGCAAGTCGTA+GGG | + | chr5.3:73006737-73006756 | MS.gene47724:CDS | 45.0% | |
| TCAAGCACCTCAGAACAATG+CGG | - | chr5.3:73006546-73006565 | None:intergenic | 45.0% | |
| ! | AACGAAGAAAGCACGGTTCA+TGG | + | chr5.3:73006632-73006651 | MS.gene47724:CDS | 45.0% |
| ! | AGTCGAAGACCTAGGCATTT+TGG | + | chr5.3:73004598-73004617 | MS.gene47724:intron | 45.0% |
| ! | CATGTTGTCACTTCTGTTGG+TGG | - | chr5.3:73004303-73004322 | None:intergenic | 45.0% |
| ! | CTTTTTCCCGCATTGTTCTG+AGG | + | chr5.3:73006536-73006555 | MS.gene47724:CDS | 45.0% |
| ! | TTGGTGCCTTATGGTAGTGT+TGG | + | chr5.3:73004222-73004241 | MS.gene47724:CDS | 45.0% |
| AGGAAGGAAAGGGAAAGCCA+AGG | + | chr5.3:73004184-73004203 | MS.gene47724:intron | 50.0% | |
| AGGGTAGCCATAGAGAATGC+TGG | + | chr5.3:73006252-73006271 | MS.gene47724:CDS | 50.0% | |
| ATCTGCCCCAGCATTCTCTA+TGG | - | chr5.3:73006262-73006281 | None:intergenic | 50.0% | |
| ATGCATGAGATGGTGACTGC+AGG | + | chr5.3:73004931-73004950 | MS.gene47724:intron | 50.0% | |
| ATTCCGGCAGAGATTGGACT+CGG | - | chr5.3:73005308-73005327 | None:intergenic | 50.0% | |
| CAAGCACCTCAGAACAATGC+GGG | - | chr5.3:73006545-73006564 | None:intergenic | 50.0% | |
| CGTCAGAGTCCAATGCCTTA+AGG | - | chr5.3:73005392-73005411 | None:intergenic | 50.0% | |
| CTACATCATCGGCAAGTCGT+AGG | + | chr5.3:73006736-73006755 | MS.gene47724:CDS | 50.0% | |
| CTTCTTCCGTTCCCTTCTCT+AGG | - | chr5.3:73006605-73006624 | None:intergenic | 50.0% | |
| GAGAGTCGTAAGGTCTGACA+TGG | + | chr5.3:73005224-73005243 | MS.gene47724:CDS | 50.0% | |
| GCTGTTGAACTTGCATAGCG+TGG | - | chr5.3:73006291-73006310 | None:intergenic | 50.0% | |
| GGAAGGAGTCTCACAAGGAT+AGG | + | chr5.3:73005733-73005752 | MS.gene47724:CDS | 50.0% | |
| GGATGGATCCTTTCGTCTTG+CGG | - | chr5.3:73005589-73005608 | None:intergenic | 50.0% | |
| GGGTAGCCATAGAGAATGCT+GGG | + | chr5.3:73006253-73006272 | MS.gene47724:CDS | 50.0% | |
| GGTAGCCATAGAGAATGCTG+GGG | + | chr5.3:73006254-73006273 | MS.gene47724:CDS | 50.0% | |
| GGTTCCACTTCCATTGCATC+TGG | - | chr5.3:73005336-73005355 | None:intergenic | 50.0% | |
| GTTCTTTCCTGCTGAGGCAA+GGG | + | chr5.3:73006233-73006252 | MS.gene47724:CDS | 50.0% | |
| TAGGCTGTTCTTTCCTGCTG+AGG | + | chr5.3:73006227-73006246 | MS.gene47724:CDS | 50.0% | |
| TCAGAGATTGACGAGGCGAA+AGG | + | chr5.3:73005686-73005705 | MS.gene47724:CDS | 50.0% | |
| TGAAAAAACGGTGCAGGGGA+AGG | + | chr5.3:73005716-73005735 | MS.gene47724:CDS | 50.0% | |
| TGAAGAACCGTGTATCCACG+AGG | - | chr5.3:73005561-73005580 | None:intergenic | 50.0% | |
| TGTTCTTTCCTGCTGAGGCA+AGG | + | chr5.3:73006232-73006251 | MS.gene47724:CDS | 50.0% | |
| !! | GGTGCAGAAGGCATTTCACA+AGG | + | chr5.3:73006668-73006687 | MS.gene47724:CDS | 50.0% |
| !! | GTGTTGATTCCGGCAGAGAT+TGG | - | chr5.3:73005314-73005333 | None:intergenic | 50.0% |
| CTAGGTCTTCGACTGCAGAG+CGG | - | chr5.3:73004592-73004611 | None:intergenic | 55.0% | |
| GACGGCGTGAATGCATGAGA+TGG | + | chr5.3:73004921-73004940 | MS.gene47724:intron | 55.0% | |
| TCACGTTGCCGCAAGACGAA+AGG | + | chr5.3:73005578-73005597 | MS.gene47724:CDS | 55.0% | |
| ATGGCTACCCTTGCCTCAGC+AGG | - | chr5.3:73006243-73006262 | None:intergenic | 60.0% | |
| CCTCCGAGTCCAATCTCTGC+CGG | + | chr5.3:73005302-73005321 | MS.gene47724:CDS | 60.0% | |
| CGCTCTGCAGTCGAAGACCT+AGG | + | chr5.3:73004590-73004609 | MS.gene47724:intron | 60.0% | |
| CGGCAGAGATTGGACTCGGA+GGG | - | chr5.3:73005304-73005323 | None:intergenic | 60.0% | |
| GCAGGGGAAGGAGTCTCACA+AGG | + | chr5.3:73005728-73005747 | MS.gene47724:CDS | 60.0% | |
| CCGGCAGAGATTGGACTCGG+AGG | - | chr5.3:73005305-73005324 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73003871 | 73006791 | 73003871 | ID=MS.gene47724 |
| chr5.3 | mRNA | 73003871 | 73006791 | 73003871 | ID=MS.gene47724.t1;Parent=MS.gene47724 |
| chr5.3 | exon | 73003871 | 73004105 | 73003871 | ID=MS.gene47724.t1.exon1;Parent=MS.gene47724.t1 |
| chr5.3 | CDS | 73003871 | 73004105 | 73003871 | ID=cds.MS.gene47724.t1;Parent=MS.gene47724.t1 |
| chr5.3 | exon | 73004220 | 73004434 | 73004220 | ID=MS.gene47724.t1.exon2;Parent=MS.gene47724.t1 |
| chr5.3 | CDS | 73004220 | 73004434 | 73004220 | ID=cds.MS.gene47724.t1;Parent=MS.gene47724.t1 |
| chr5.3 | exon | 73005117 | 73005876 | 73005117 | ID=MS.gene47724.t1.exon3;Parent=MS.gene47724.t1 |
| chr5.3 | CDS | 73005117 | 73005876 | 73005117 | ID=cds.MS.gene47724.t1;Parent=MS.gene47724.t1 |
| chr5.3 | exon | 73006217 | 73006405 | 73006217 | ID=MS.gene47724.t1.exon4;Parent=MS.gene47724.t1 |
| chr5.3 | CDS | 73006217 | 73006405 | 73006217 | ID=cds.MS.gene47724.t1;Parent=MS.gene47724.t1 |
| chr5.3 | exon | 73006520 | 73006791 | 73006520 | ID=MS.gene47724.t1.exon5;Parent=MS.gene47724.t1 |
| chr5.3 | CDS | 73006520 | 73006791 | 73006520 | ID=cds.MS.gene47724.t1;Parent=MS.gene47724.t1 |
| Gene Sequence |
| Protein sequence |
