Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47736.t1 | XP_003617340.1 | 100 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 9.30E-146 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47736.t1 | Q6PGS5 | 30.1 | 219 | 139 | 7 | 61 | 273 | 38 | 248 | 2.2e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47736.t1 | G7K374 | 100.0 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 6.7e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049621 | MS.gene47736 | PPI |
| MS.gene008402 | MS.gene47736 | PPI |
| MS.gene05093 | MS.gene47736 | PPI |
| MS.gene47736 | MS.gene55688 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47736.t1 | MTR_5g090550 | 100.000 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 0.0 | 561 |
| MS.gene47736.t1 | MTR_3g450410 | 82.117 | 274 | 49 | 0 | 1 | 274 | 1 | 274 | 3.50e-173 | 479 |
| MS.gene47736.t1 | MTR_3g063070 | 49.583 | 240 | 121 | 0 | 35 | 274 | 22 | 261 | 1.98e-81 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47736.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene47736.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene47736.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene47736.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene47736.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene47736.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene47736.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene47736.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene47736.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
| MS.gene47736.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
| MS.gene47736.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
Find 54 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATATACTTCCATTAT+TGG | 0.162120 | 5.3:-72951732 | MS.gene47736:CDS |
| CTGACTTGGGGATGATATTT+TGG | 0.191833 | 5.3:-72949968 | MS.gene47736:CDS |
| TGCGTTGTCTACGTTTGCTC+TGG | 0.295133 | 5.3:-72951238 | MS.gene47736:CDS |
| CCACCAATAATGGAAGTATA+TGG | 0.336930 | 5.3:+72951729 | None:intergenic |
| GGTTTCTGTTGGTTACTTCA+TGG | 0.348896 | 5.3:-72949991 | MS.gene47736:CDS |
| CAAACAAATTAGCCTGGTTC+TGG | 0.356158 | 5.3:+72951784 | None:intergenic |
| TTCAGCAGATGCACCCCTTT+GGG | 0.368570 | 5.3:-72948668 | MS.gene47736:CDS |
| GTACACGAACAAAAGTATTC+TGG | 0.379427 | 5.3:+72949404 | None:intergenic |
| GTTCAGCAGATGCACCCCTT+TGG | 0.395777 | 5.3:-72948669 | MS.gene47736:CDS |
| CAAAAGCTTATCTCATCAAT+GGG | 0.403192 | 5.3:-72949556 | MS.gene47736:CDS |
| TGTCAGTTATGAACTTGATT+TGG | 0.405632 | 5.3:-72948614 | MS.gene47736:CDS |
| TACCATCTCAAGTTGATTCC+AGG | 0.408827 | 5.3:+72949689 | None:intergenic |
| AACAACAATGTCTTTGTACT+TGG | 0.411039 | 5.3:-72951322 | MS.gene47736:CDS |
| TCAAAAGCTTATCTCATCAA+TGG | 0.412137 | 5.3:-72949557 | MS.gene47736:CDS |
| TGCTTACTTGCACTTTGATC+AGG | 0.414301 | 5.3:-72949370 | MS.gene47736:intron |
| GGCTGGAATAGCTCTTAAAA+TGG | 0.414912 | 5.3:+72951500 | None:intergenic |
| GCGTTGTCTACGTTTGCTCT+GGG | 0.417870 | 5.3:-72951237 | MS.gene47736:CDS |
| GGTTACTTCATGGCTGACTT+GGG | 0.438442 | 5.3:-72949981 | MS.gene47736:CDS |
| ATCTCTGAGACAACAACTCC+TGG | 0.443341 | 5.3:-72949707 | MS.gene47736:CDS |
| AACGTATTGAGTGGAATAAC+CGG | 0.480032 | 5.3:-72951465 | MS.gene47736:intron |
| TGAAGGTATCTTGATGTAGC+TGG | 0.481580 | 5.3:-72949590 | MS.gene47736:intron |
| ACAACTAGTATTTGCCCAAA+GGG | 0.485721 | 5.3:+72948654 | None:intergenic |
| CCTTCACAAACAAATTAGCC+TGG | 0.487479 | 5.3:+72951778 | None:intergenic |
| TGGTTACTTCATGGCTGACT+TGG | 0.487813 | 5.3:-72949982 | MS.gene47736:CDS |
| TGTGATATTCATTGCTTGGC+TGG | 0.488189 | 5.3:-72949531 | MS.gene47736:intron |
| TATTCAATGTTGAGTGGAGA+AGG | 0.490363 | 5.3:-72949755 | MS.gene47736:CDS |
| CCAGGCTAATTTGTTTGTGA+AGG | 0.491470 | 5.3:-72951778 | MS.gene47736:CDS |
| TTCTCCACTCAACATTGAAT+AGG | 0.506976 | 5.3:+72949757 | None:intergenic |
| GGGTTGTGATATTCATTGCT+TGG | 0.509380 | 5.3:-72949535 | MS.gene47736:CDS |
| ACGTTGGATTCTAGTGAGGC+TGG | 0.514845 | 5.3:+72951483 | None:intergenic |
| CCATATACTTCCATTATTGG+TGG | 0.519713 | 5.3:-72951729 | MS.gene47736:CDS |
| TTCATAACTGACAGCACCAC+TGG | 0.530852 | 5.3:+72948624 | None:intergenic |
| GTTACTTCATGGCTGACTTG+GGG | 0.538892 | 5.3:-72949980 | MS.gene47736:CDS |
| GTTGTCTACGTTTGCTCTGG+GGG | 0.543652 | 5.3:-72951235 | MS.gene47736:intron |
| TTATTGCAACAGGTTTCTGT+TGG | 0.549940 | 5.3:-72950002 | MS.gene47736:intron |
| CTCCTGGAATCAACTTGAGA+TGG | 0.551944 | 5.3:-72949691 | MS.gene47736:intron |
| ATGGAAGTATATGGAATCAG+AGG | 0.569837 | 5.3:+72951738 | None:intergenic |
| GGTTATTCCACTCAATACGT+TGG | 0.581665 | 5.3:+72951467 | None:intergenic |
| TACTCATATCCACCAAGAGC+AGG | 0.583577 | 5.3:+72949939 | None:intergenic |
| CGTTGTCTACGTTTGCTCTG+GGG | 0.587028 | 5.3:-72951236 | MS.gene47736:CDS |
| TTGATGTAGCTGGAATGAAA+AGG | 0.589122 | 5.3:-72949580 | MS.gene47736:CDS |
| CTAGAATCCAACGTATTGAG+TGG | 0.603281 | 5.3:-72951474 | MS.gene47736:CDS |
| ATTCAATGTTGAGTGGAGAA+GGG | 0.619830 | 5.3:-72949754 | MS.gene47736:CDS |
| AACAACTAGTATTTGCCCAA+AGG | 0.624762 | 5.3:+72948653 | None:intergenic |
| AGGGCAGCTGTACACATACA+TGG | 0.625873 | 5.3:-72949735 | MS.gene47736:CDS |
| ATTCAAATCATACCAGAACC+AGG | 0.632366 | 5.3:-72951796 | MS.gene47736:CDS |
| CAGCTGAACTTCTTACAGAA+CGG | 0.632644 | 5.3:-72951266 | MS.gene47736:CDS |
| TGGAAGTATATGGAATCAGA+GGG | 0.646274 | 5.3:+72951739 | None:intergenic |
| CAATACGTTGGATTCTAGTG+AGG | 0.649208 | 5.3:+72951479 | None:intergenic |
| GTAGCCTATTCAATGTTGAG+TGG | 0.649521 | 5.3:-72949761 | MS.gene47736:CDS |
| TAATGAAGACATTAGCGAAG+AGG | 0.656512 | 5.3:-72948569 | MS.gene47736:CDS |
| ACTAGTTGTTGTTGTACCAG+TGG | 0.666319 | 5.3:-72948640 | MS.gene47736:CDS |
| CAACTAGTATTTGCCCAAAG+GGG | 0.709004 | 5.3:+72948655 | None:intergenic |
| AAAAGCTTATCTCATCAATG+GGG | 0.737817 | 5.3:-72949555 | MS.gene47736:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACAAATATTTATCAAA+TGG | + | chr5.3:72951507-72951526 | None:intergenic | 10.0% |
| !! | GTAATTATTTAAATCAAATA+TGG | - | chr5.3:72950218-72950237 | MS.gene47736:intron | 10.0% |
| !! | ATAGAAAGAATTACTAAAAA+AGG | + | chr5.3:72950192-72950211 | None:intergenic | 15.0% |
| !! | TTATGAGTTTAGATAAATTA+GGG | - | chr5.3:72949292-72949311 | MS.gene47736:intron | 15.0% |
| !!! | TATTTTCCTAAGATAATTTA+AGG | - | chr5.3:72948737-72948756 | MS.gene47736:intron | 15.0% |
| !!! | TTTATTTTATTTATTGCAAC+AGG | - | chr5.3:72950373-72950392 | MS.gene47736:intron | 15.0% |
| !! | ATTTAATGTGACTTCATATT+TGG | - | chr5.3:72950566-72950585 | MS.gene47736:intron | 20.0% |
| !! | CTAATATAGAAACTAAACTT+GGG | - | chr5.3:72949682-72949701 | MS.gene47736:intron | 20.0% |
| !! | GTTATGAGTTTAGATAAATT+AGG | - | chr5.3:72949291-72949310 | MS.gene47736:intron | 20.0% |
| !! | TACAAATATTTATCAAATGG+TGG | + | chr5.3:72951504-72951523 | None:intergenic | 20.0% |
| !! | TAGTAACCTTAAATTATCTT+AGG | + | chr5.3:72948746-72948765 | None:intergenic | 20.0% |
| !! | TAGTAATTGTTAACATTACA+CGG | - | chr5.3:72949407-72949426 | MS.gene47736:CDS | 20.0% |
| !! | TATGAGTTTAGATAAATTAG+GGG | - | chr5.3:72949293-72949312 | MS.gene47736:intron | 20.0% |
| !! | TCTAATATAGAAACTAAACT+TGG | - | chr5.3:72949681-72949700 | MS.gene47736:intron | 20.0% |
| !! | TTATCAATGATATTTCATCA+TGG | + | chr5.3:72949340-72949359 | None:intergenic | 20.0% |
| !!! | AACTCTTTATTCTGAAATTT+TGG | - | chr5.3:72951101-72951120 | MS.gene47736:intron | 20.0% |
| !!! | AGACATTGTTGTTATAAAAA+TGG | + | chr5.3:72949056-72949075 | None:intergenic | 20.0% |
| !!! | ATTGTAGCTCATATTTTTAT+TGG | - | chr5.3:72950305-72950324 | MS.gene47736:intron | 20.0% |
| !!! | ATTGTTTTGCATTTATTAGT+TGG | + | chr5.3:72949879-72949898 | None:intergenic | 20.0% |
| !!! | GAATTAGTTTTCATATTACT+TGG | + | chr5.3:72949641-72949660 | None:intergenic | 20.0% |
| !!! | TCTAAATTTTCTATTTTTCC+AGG | - | chr5.3:72948831-72948850 | MS.gene47736:intron | 20.0% |
| !!! | TTAATTAAGTTTTTCTACAG+TGG | + | chr5.3:72950275-72950294 | None:intergenic | 20.0% |
| !!! | TTATCAGTTTTTCATTATAC+TGG | - | chr5.3:72950014-72950033 | MS.gene47736:intron | 20.0% |
| !!! | TTCATTTCTTTTGTAATTTC+CGG | - | chr5.3:72951633-72951652 | MS.gene47736:intron | 20.0% |
| !!! | TTGTTGTTATAAAAATGGAA+TGG | + | chr5.3:72949051-72949070 | None:intergenic | 20.0% |
| !!! | TTTATCCAAGATATCTTTTT+GGG | + | chr5.3:72949856-72949875 | None:intergenic | 20.0% |
| ! | AAAGAAAAATCACGACATAA+TGG | + | chr5.3:72950745-72950764 | None:intergenic | 25.0% |
| ! | AACTCACAATCTAAACAAAT+AGG | - | chr5.3:72949587-72949606 | MS.gene47736:CDS | 25.0% |
| ! | AAGAAAAATCACGACATAAT+GGG | + | chr5.3:72950744-72950763 | None:intergenic | 25.0% |
| ! | ACTCACAATCTAAACAAATA+GGG | - | chr5.3:72949588-72949607 | MS.gene47736:CDS | 25.0% |
| ! | ACTTGACAGTATCAAATATT+AGG | + | chr5.3:72949514-72949533 | None:intergenic | 25.0% |
| ! | AGTAATTGTTAACATTACAC+GGG | - | chr5.3:72949408-72949427 | MS.gene47736:CDS | 25.0% |
| ! | AGTAGTAATCACATATAATG+AGG | - | chr5.3:72949248-72949267 | MS.gene47736:intron | 25.0% |
| ! | ATACGAACTATATGTATGTA+TGG | + | chr5.3:72951469-72951488 | None:intergenic | 25.0% |
| ! | ATGAGTTTAGATAAATTAGG+GGG | - | chr5.3:72949294-72949313 | MS.gene47736:intron | 25.0% |
| ! | ATTCCATATACTTCCATTAT+TGG | - | chr5.3:72948653-72948672 | MS.gene47736:CDS | 25.0% |
| ! | CCAATATTCAATGATATAAC+AGG | - | chr5.3:72951694-72951713 | MS.gene47736:intron | 25.0% |
| ! | CCTGTTATATCATTGAATAT+TGG | + | chr5.3:72951697-72951716 | None:intergenic | 25.0% |
| ! | CTTGACAGTATCAAATATTA+GGG | + | chr5.3:72949513-72949532 | None:intergenic | 25.0% |
| ! | TCTAAACAAATAGGGAAATA+AGG | - | chr5.3:72949596-72949615 | MS.gene47736:intron | 25.0% |
| ! | TTCATGTATTCCTAAAAGTA+GGG | + | chr5.3:72949569-72949588 | None:intergenic | 25.0% |
| ! | TTGACAGTATCAAATATTAG+GGG | + | chr5.3:72949512-72949531 | None:intergenic | 25.0% |
| !! | AGTAGTATATTTTGTCCATT+TGG | - | chr5.3:72951343-72951362 | MS.gene47736:CDS | 25.0% |
| !! | GGTTTTCAAAGATTATCAAA+GGG | - | chr5.3:72951792-72951811 | MS.gene47736:CDS | 25.0% |
| !! | GTTTATCCAAGATATCTTTT+TGG | + | chr5.3:72949857-72949876 | None:intergenic | 25.0% |
| !! | TGGTTTTCAAAGATTATCAA+AGG | - | chr5.3:72951791-72951810 | MS.gene47736:CDS | 25.0% |
| !!! | ACTAGTTGTTTTAGAATGAA+AGG | - | chr5.3:72949988-72950007 | MS.gene47736:CDS | 25.0% |
| !!! | AGTAATTTGTTGTTTTCATG+TGG | - | chr5.3:72951239-72951258 | MS.gene47736:CDS | 25.0% |
| !!! | GGAAATTTTAGCAGAAAATA+TGG | + | chr5.3:72950171-72950190 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTGTTTTCATGT+GGG | - | chr5.3:72951240-72951259 | MS.gene47736:CDS | 25.0% |
| !!! | TAATTTGTTGTTTTCATGTG+GGG | - | chr5.3:72951241-72951260 | MS.gene47736:CDS | 25.0% |
| AAAAGCTTATCTCATCAATG+GGG | - | chr5.3:72950830-72950849 | MS.gene47736:intron | 30.0% | |
| AAATGAAAAAACTCACTCAC+CGG | + | chr5.3:72948942-72948961 | None:intergenic | 30.0% | |
| AACAACAATGTCTTTGTACT+TGG | - | chr5.3:72949063-72949082 | MS.gene47736:intron | 30.0% | |
| AACTATACTCAAGTCAAATG+TGG | - | chr5.3:72951534-72951553 | MS.gene47736:CDS | 30.0% | |
| ACATTAAATCATCTCCAGAT+GGG | + | chr5.3:72950555-72950574 | None:intergenic | 30.0% | |
| AGTAATCACATATAATGAGG+AGG | - | chr5.3:72949251-72949270 | MS.gene47736:intron | 30.0% | |
| ATACCTTCACGAACAAAATA+CGG | + | chr5.3:72950784-72950803 | None:intergenic | 30.0% | |
| ATTTCATTCATCACACATTC+TGG | + | chr5.3:72949962-72949981 | None:intergenic | 30.0% | |
| CAAAAGCTTATCTCATCAAT+GGG | - | chr5.3:72950829-72950848 | MS.gene47736:intron | 30.0% | |
| CAAGATCACCTAAAATTTGT+AGG | + | chr5.3:72951285-72951304 | None:intergenic | 30.0% | |
| CACAAGACAATTCTTAAACT+CGG | + | chr5.3:72951058-72951077 | None:intergenic | 30.0% | |
| CACATCTCAAAAAAACCAAA+TGG | + | chr5.3:72951361-72951380 | None:intergenic | 30.0% | |
| GTAATCACATATAATGAGGA+GGG | - | chr5.3:72949252-72949271 | MS.gene47736:intron | 30.0% | |
| GTAATTGTTAACATTACACG+GGG | - | chr5.3:72949409-72949428 | MS.gene47736:CDS | 30.0% | |
| GTTCATGTATTCCTAAAAGT+AGG | + | chr5.3:72949570-72949589 | None:intergenic | 30.0% | |
| TAATCACATATAATGAGGAG+GGG | - | chr5.3:72949253-72949272 | MS.gene47736:intron | 30.0% | |
| TCAAAAGCTTATCTCATCAA+TGG | - | chr5.3:72950828-72950847 | MS.gene47736:intron | 30.0% | |
| TCATGTATTCCTAAAAGTAG+GGG | + | chr5.3:72949568-72949587 | None:intergenic | 30.0% | |
| TCTTGCAAGAGATAAAGAAA+AGG | + | chr5.3:72949210-72949229 | None:intergenic | 30.0% | |
| TGAGTTTAGATAAATTAGGG+GGG | - | chr5.3:72949295-72949314 | MS.gene47736:intron | 30.0% | |
| TGGTTCACATTATATTAGTC+TGG | + | chr5.3:72949932-72949951 | None:intergenic | 30.0% | |
| TGTCAGTTATGAACTTGATT+TGG | - | chr5.3:72951771-72951790 | MS.gene47736:CDS | 30.0% | |
| TTAGACCCAAAAAGATATCT+TGG | - | chr5.3:72949848-72949867 | MS.gene47736:intron | 30.0% | |
| ! | AATGTTGGATTTTACATGCA+TGG | - | chr5.3:72951397-72951416 | MS.gene47736:intron | 30.0% |
| ! | TAGACTTGTACTCTTTTGTT+TGG | - | chr5.3:72951591-72951610 | MS.gene47736:intron | 30.0% |
| ! | TATTCCTATGCACGATTTTA+AGG | - | chr5.3:72950098-72950117 | MS.gene47736:intron | 30.0% |
| !! | AGACTTGTACTCTTTTGTTT+GGG | - | chr5.3:72951592-72951611 | MS.gene47736:intron | 30.0% |
| !! | CTACAAATTTTAGGTGATCT+TGG | - | chr5.3:72951283-72951302 | MS.gene47736:CDS | 30.0% |
| !! | TCTATGATGTACTTGCTATA+GGG | - | chr5.3:72951215-72951234 | MS.gene47736:intron | 30.0% |
| !! | TTCTATGATGTACTTGCTAT+AGG | - | chr5.3:72951214-72951233 | MS.gene47736:intron | 30.0% |
| !!! | CATTTGGTTTTTTTGAGATG+TGG | - | chr5.3:72951359-72951378 | MS.gene47736:intron | 30.0% |
| !!! | GGAAACACTTTTTTTTCATC+TGG | - | chr5.3:72950326-72950345 | MS.gene47736:intron | 30.0% |
| AAATCTGCATGGTAAATCTG+AGG | - | chr5.3:72951663-72951682 | MS.gene47736:intron | 35.0% | |
| AACAACTAGTATTTGCCCAA+AGG | + | chr5.3:72951735-72951754 | None:intergenic | 35.0% | |
| AACGTATTGAGTGGAATAAC+CGG | - | chr5.3:72948920-72948939 | MS.gene47736:intron | 35.0% | |
| AATCTGCATGGTAAATCTGA+GGG | - | chr5.3:72951664-72951683 | MS.gene47736:intron | 35.0% | |
| ACAACTAGTATTTGCCCAAA+GGG | + | chr5.3:72951734-72951753 | None:intergenic | 35.0% | |
| AGCAAAAATGCCACCAATAA+TGG | + | chr5.3:72948669-72948688 | None:intergenic | 35.0% | |
| ATGACCTTAAAATCGTGCAT+AGG | + | chr5.3:72950105-72950124 | None:intergenic | 35.0% | |
| ATTCAAATCATACCAGAACC+AGG | - | chr5.3:72948589-72948608 | MS.gene47736:CDS | 35.0% | |
| ATTCAATGTTGAGTGGAGAA+GGG | - | chr5.3:72950631-72950650 | MS.gene47736:intron | 35.0% | |
| ATTTATCAAATGGTGGTCAG+AGG | + | chr5.3:72951497-72951516 | None:intergenic | 35.0% | |
| CACATTAAATCATCTCCAGA+TGG | + | chr5.3:72950556-72950575 | None:intergenic | 35.0% | |
| CCATATACTTCCATTATTGG+TGG | - | chr5.3:72948656-72948675 | MS.gene47736:CDS | 35.0% | |
| GTGATCTTGTAGGCAAAAAA+TGG | + | chr5.3:72951179-72951198 | None:intergenic | 35.0% | |
| TAAGAATTGTCTTGTGTCTC+TGG | - | chr5.3:72951062-72951081 | MS.gene47736:intron | 35.0% | |
| TAATGAAGACATTAGCGAAG+AGG | - | chr5.3:72951816-72951835 | MS.gene47736:CDS | 35.0% | |
| TAGGAGTGAATCTTGAATGT+TGG | - | chr5.3:72951382-72951401 | MS.gene47736:intron | 35.0% | |
| TATTCAATGTTGAGTGGAGA+AGG | - | chr5.3:72950630-72950649 | MS.gene47736:intron | 35.0% | |
| TCACACATTCTGGATTCATA+TGG | + | chr5.3:72949952-72949971 | None:intergenic | 35.0% | |
| TGCAAAACAATCGACCAATA+AGG | - | chr5.3:72949888-72949907 | MS.gene47736:intron | 35.0% | |
| TGTTGAGAAAGTGATCTTGT+AGG | + | chr5.3:72951189-72951208 | None:intergenic | 35.0% | |
| TTATTGCAACAGGTTTCTGT+TGG | - | chr5.3:72950383-72950402 | MS.gene47736:intron | 35.0% | |
| TTCTCCACTCAACATTGAAT+AGG | + | chr5.3:72950631-72950650 | None:intergenic | 35.0% | |
| TTCTTCAGCATGAACCTTAT+TGG | + | chr5.3:72949905-72949924 | None:intergenic | 35.0% | |
| TTGATGTAGCTGGAATGAAA+AGG | - | chr5.3:72950805-72950824 | MS.gene47736:intron | 35.0% | |
| ! | ATGGAAGTATATGGAATCAG+AGG | + | chr5.3:72948650-72948669 | None:intergenic | 35.0% |
| ! | CCACCAATAATGGAAGTATA+TGG | + | chr5.3:72948659-72948678 | None:intergenic | 35.0% |
| ! | GATCATGGCCTACAAATTTT+AGG | - | chr5.3:72951274-72951293 | MS.gene47736:CDS | 35.0% |
| ! | TGGAAGTATATGGAATCAGA+GGG | + | chr5.3:72948649-72948668 | None:intergenic | 35.0% |
| ! | TGGCTCTATTAGCAAAATGA+AGG | + | chr5.3:72950255-72950274 | None:intergenic | 35.0% |
| ! | TGTGACTTCATATTTGGTTC+AGG | - | chr5.3:72950572-72950591 | MS.gene47736:intron | 35.0% |
| ! | TTGGTGGATATGAGTATGTA+AGG | - | chr5.3:72950453-72950472 | MS.gene47736:intron | 35.0% |
| ! | TTTCCGTATTTTGTTCGTGA+AGG | - | chr5.3:72950778-72950797 | MS.gene47736:intron | 35.0% |
| !! | AATTCTTAAACTCGGTGTGT+CGG | + | chr5.3:72951050-72951069 | None:intergenic | 35.0% |
| !! | ATGCATGGATTAGAGATTAG+TGG | - | chr5.3:72951412-72951431 | MS.gene47736:intron | 35.0% |
| !! | CTATGATGTACTTGCTATAG+GGG | - | chr5.3:72951216-72951235 | MS.gene47736:intron | 35.0% |
| !! | GTACACGAACAAAAGTATTC+TGG | + | chr5.3:72950984-72951003 | None:intergenic | 35.0% |
| !! | GTACTCTTTTGTTTGGGATT+TGG | - | chr5.3:72951598-72951617 | MS.gene47736:intron | 35.0% |
| !!! | TGGTTTTTTTGAGATGTGGT+AGG | - | chr5.3:72951363-72951382 | MS.gene47736:intron | 35.0% |
| !!! | TTTTGGTTTTTTCCTGCTCT+TGG | - | chr5.3:72950434-72950453 | MS.gene47736:intron | 35.0% |
| AATATTAGGGGACGTAAACC+TGG | + | chr5.3:72949500-72949519 | None:intergenic | 40.0% | |
| ATATTCATTGCTTGGCTGGT+AGG | - | chr5.3:72950858-72950877 | MS.gene47736:intron | 40.0% | |
| CAACTAGTATTTGCCCAAAG+GGG | + | chr5.3:72951733-72951752 | None:intergenic | 40.0% | |
| CAATACGTTGGATTCTAGTG+AGG | + | chr5.3:72948909-72948928 | None:intergenic | 40.0% | |
| CAGCTGAACTTCTTACAGAA+CGG | - | chr5.3:72949119-72949138 | MS.gene47736:intron | 40.0% | |
| CCTTCACAAACAAATTAGCC+TGG | + | chr5.3:72948610-72948629 | None:intergenic | 40.0% | |
| CCTTTGCACCTAAAACTTGT+AGG | + | chr5.3:72951309-72951328 | None:intergenic | 40.0% | |
| CTAGAATCCAACGTATTGAG+TGG | - | chr5.3:72948911-72948930 | MS.gene47736:intron | 40.0% | |
| GGCTGGAATAGCTCTTAAAA+TGG | + | chr5.3:72948888-72948907 | None:intergenic | 40.0% | |
| GGGTTGTGATATTCATTGCT+TGG | - | chr5.3:72950850-72950869 | MS.gene47736:intron | 40.0% | |
| GGTTATTCCACTCAATACGT+TGG | + | chr5.3:72948921-72948940 | None:intergenic | 40.0% | |
| GTAGCCTATTCAATGTTGAG+TGG | - | chr5.3:72950624-72950643 | MS.gene47736:intron | 40.0% | |
| TGCTTACTTGCACTTTGATC+AGG | - | chr5.3:72951015-72951034 | MS.gene47736:intron | 40.0% | |
| TGTGATATTCATTGCTTGGC+TGG | - | chr5.3:72950854-72950873 | MS.gene47736:intron | 40.0% | |
| TTAACATTACACGGGGAGTT+GGG | - | chr5.3:72949416-72949435 | MS.gene47736:intron | 40.0% | |
| TTTCATGTGGGGAAGAAAGT+GGG | - | chr5.3:72951252-72951271 | MS.gene47736:CDS | 40.0% | |
| ! | ACTAGTTGTTGTTGTACCAG+TGG | - | chr5.3:72951745-72951764 | MS.gene47736:CDS | 40.0% |
| ! | ATACTGTCAAGTCACTGACT+TGG | - | chr5.3:72949522-72949541 | MS.gene47736:intron | 40.0% |
| ! | CAAACAAATTAGCCTGGTTC+TGG | + | chr5.3:72948604-72948623 | None:intergenic | 40.0% |
| ! | GATCTTGGCCTACAAGTTTT+AGG | - | chr5.3:72951298-72951317 | MS.gene47736:CDS | 40.0% |
| ! | GGTTTCTGTTGGTTACTTCA+TGG | - | chr5.3:72950394-72950413 | MS.gene47736:intron | 40.0% |
| ! | TGGCATTTTTGCTTGCAAGA+TGG | - | chr5.3:72948676-72948695 | MS.gene47736:intron | 40.0% |
| ! | TTTTCATGTGGGGAAGAAAG+TGG | - | chr5.3:72951251-72951270 | MS.gene47736:CDS | 40.0% |
| !! | CCAGGCTAATTTGTTTGTGA+AGG | - | chr5.3:72948607-72948626 | MS.gene47736:CDS | 40.0% |
| !! | GCTTAGTAAGCTTTAGCTTG+AGG | + | chr5.3:72949773-72949792 | None:intergenic | 40.0% |
| !! | TACCATCTCAAGTTGATTCC+AGG | + | chr5.3:72950699-72950718 | None:intergenic | 40.0% |
| !! | TAGTAAGCTTTAGCTTGAGG+AGG | + | chr5.3:72949770-72949789 | None:intergenic | 40.0% |
| !! | TGAAGGTATCTTGATGTAGC+TGG | - | chr5.3:72950795-72950814 | MS.gene47736:intron | 40.0% |
| !!! | CCTACAAGTTTTAGGTGCAA+AGG | - | chr5.3:72951306-72951325 | MS.gene47736:CDS | 40.0% |
| !!! | CTGACTTGGGGATGATATTT+TGG | - | chr5.3:72950417-72950436 | MS.gene47736:intron | 40.0% |
| CTCCTGGAATCAACTTGAGA+TGG | - | chr5.3:72950694-72950713 | MS.gene47736:intron | 45.0% | |
| GAGTTAAGAGCAGCGTGATA+AGG | + | chr5.3:72949458-72949477 | None:intergenic | 45.0% | |
| GCTGAGTAAGATCATAGACC+TGG | + | chr5.3:72948852-72948871 | None:intergenic | 45.0% | |
| GTTAACATTACACGGGGAGT+TGG | - | chr5.3:72949415-72949434 | MS.gene47736:intron | 45.0% | |
| TACTCATATCCACCAAGAGC+AGG | + | chr5.3:72950449-72950468 | None:intergenic | 45.0% | |
| TGCTTACCGAAACTATCTGC+AGG | - | chr5.3:72950955-72950974 | MS.gene47736:intron | 45.0% | |
| TGGCAACCTGCAGATAGTTT+CGG | + | chr5.3:72950964-72950983 | None:intergenic | 45.0% | |
| TGGTTACTTCATGGCTGACT+TGG | - | chr5.3:72950403-72950422 | MS.gene47736:intron | 45.0% | |
| TTAAGAGCAGCGTGATAAGG+AGG | + | chr5.3:72949455-72949474 | None:intergenic | 45.0% | |
| TTCATAACTGACAGCACCAC+TGG | + | chr5.3:72951764-72951783 | None:intergenic | 45.0% | |
| ! | CCATGCAGATTTTGCTTGAC+CGG | + | chr5.3:72951655-72951674 | None:intergenic | 45.0% |
| ! | GGTTACTTCATGGCTGACTT+GGG | - | chr5.3:72950404-72950423 | MS.gene47736:intron | 45.0% |
| ! | GTAAACCTGGTTTGATGGCT+GGG | + | chr5.3:72949487-72949506 | None:intergenic | 45.0% |
| ! | TAAACCTGGTTTGATGGCTG+GGG | + | chr5.3:72949486-72949505 | None:intergenic | 45.0% |
| ! | TCACTTGATAGCAACCCATC+TGG | - | chr5.3:72950538-72950557 | MS.gene47736:intron | 45.0% |
| !! | ACACACTAGCCCCTACTTTT+AGG | - | chr5.3:72949556-72949575 | MS.gene47736:CDS | 45.0% |
| !! | ATCTCTGAGACAACAACTCC+TGG | - | chr5.3:72950678-72950697 | MS.gene47736:intron | 45.0% |
| !! | GTTACTTCATGGCTGACTTG+GGG | - | chr5.3:72950405-72950424 | MS.gene47736:intron | 45.0% |
| !!! | TGGTTTTTTCCTGCTCTTGG+TGG | - | chr5.3:72950437-72950456 | MS.gene47736:intron | 45.0% |
| !!! | AAATTTAGATTTTTTTTTTT+TGG | + | chr5.3:72948820-72948839 | None:intergenic | 5.0% |
| ACGTTGGATTCTAGTGAGGC+TGG | + | chr5.3:72948905-72948924 | None:intergenic | 50.0% | |
| AGGGCAGCTGTACACATACA+TGG | - | chr5.3:72950650-72950669 | MS.gene47736:intron | 50.0% | |
| CCGGTCAAGCAAAATCTGCA+TGG | - | chr5.3:72951652-72951671 | MS.gene47736:intron | 50.0% | |
| CGTTGTCTACGTTTGCTCTG+GGG | - | chr5.3:72949149-72949168 | MS.gene47736:intron | 50.0% | |
| GAGTTCTCATTCTTCCGCTC+TGG | - | chr5.3:72950928-72950947 | MS.gene47736:intron | 50.0% | |
| GCGTTGTCTACGTTTGCTCT+GGG | - | chr5.3:72949148-72949167 | MS.gene47736:intron | 50.0% | |
| GTTGTCTACGTTTGCTCTGG+GGG | - | chr5.3:72949150-72949169 | MS.gene47736:intron | 50.0% | |
| TCTGGGGGTAAGAATGGTCT+TGG | - | chr5.3:72949165-72949184 | MS.gene47736:intron | 50.0% | |
| TGCGTTGTCTACGTTTGCTC+TGG | - | chr5.3:72949147-72949166 | MS.gene47736:intron | 50.0% | |
| TGGGGAAGAAAGTGGGATCA+TGG | - | chr5.3:72951259-72951278 | MS.gene47736:CDS | 50.0% | |
| TTCAGCAGATGCACCCCTTT+GGG | - | chr5.3:72951717-72951736 | MS.gene47736:CDS | 50.0% | |
| ! | CGTAAACCTGGTTTGATGGC+TGG | + | chr5.3:72949488-72949507 | None:intergenic | 50.0% |
| ! | GGGACGTAAACCTGGTTTGA+TGG | + | chr5.3:72949492-72949511 | None:intergenic | 50.0% |
| !! | GTTTGCTCTGGGGGTAAGAA+TGG | - | chr5.3:72949159-72949178 | MS.gene47736:intron | 50.0% |
| CAGCGTGATAAGGAGGTCGA+GGG | + | chr5.3:72949448-72949467 | None:intergenic | 55.0% | |
| GTTCAGCAGATGCACCCCTT+TGG | - | chr5.3:72951716-72951735 | MS.gene47736:CDS | 55.0% | |
| TCGGTAAGCATGTGCCAGAG+CGG | + | chr5.3:72950945-72950964 | None:intergenic | 55.0% | |
| GCAGCGTGATAAGGAGGTCG+AGG | + | chr5.3:72949449-72949468 | None:intergenic | 60.0% | |
| TCCACCCCAGCCATCAAACC+AGG | - | chr5.3:72949479-72949498 | MS.gene47736:intron | 60.0% | |
| ! | ACCTGGTTTGATGGCTGGGG+TGG | + | chr5.3:72949483-72949502 | None:intergenic | 60.0% |
| ! | TGGTTTGATGGCTGGGGTGG+AGG | + | chr5.3:72949480-72949499 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72948563 | 72951844 | 72948563 | ID=MS.gene47736 |
| chr5.3 | mRNA | 72948563 | 72951844 | 72948563 | ID=MS.gene47736.t1;Parent=MS.gene47736 |
| chr5.3 | exon | 72951710 | 72951844 | 72951710 | ID=MS.gene47736.t1.exon1;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72951710 | 72951844 | 72951710 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| chr5.3 | exon | 72951466 | 72951554 | 72951466 | ID=MS.gene47736.t1.exon2;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72951466 | 72951554 | 72951466 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| chr5.3 | exon | 72951236 | 72951374 | 72951236 | ID=MS.gene47736.t1.exon3;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72951236 | 72951374 | 72951236 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| chr5.3 | exon | 72949938 | 72950012 | 72949938 | ID=MS.gene47736.t1.exon4;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72949938 | 72950012 | 72949938 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| chr5.3 | exon | 72949692 | 72949813 | 72949692 | ID=MS.gene47736.t1.exon5;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72949692 | 72949813 | 72949692 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| chr5.3 | exon | 72949532 | 72949607 | 72949532 | ID=MS.gene47736.t1.exon6;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72949532 | 72949607 | 72949532 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| chr5.3 | exon | 72949371 | 72949430 | 72949371 | ID=MS.gene47736.t1.exon7;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72949371 | 72949430 | 72949371 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| chr5.3 | exon | 72948563 | 72948691 | 72948563 | ID=MS.gene47736.t1.exon8;Parent=MS.gene47736.t1 |
| chr5.3 | CDS | 72948563 | 72948691 | 72948563 | ID=cds.MS.gene47736.t1;Parent=MS.gene47736.t1 |
| Gene Sequence |
| Protein sequence |
