Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48005.t1 | XP_003617340.1 | 99.6 | 274 | 1 | 0 | 1 | 274 | 1 | 274 | 1.20E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48005.t1 | Q6PGS5 | 30.1 | 219 | 139 | 7 | 61 | 273 | 38 | 248 | 2.2e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48005.t1 | G7K374 | 99.6 | 274 | 1 | 0 | 1 | 274 | 1 | 274 | 8.7e-146 | 525.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049621 | MS.gene48005 | PPI |
| MS.gene48005 | MS.gene55688 | PPI |
| MS.gene008402 | MS.gene48005 | PPI |
| MS.gene05093 | MS.gene48005 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48005.t1 | MTR_5g090550 | 99.635 | 274 | 1 | 0 | 1 | 274 | 1 | 274 | 0.0 | 561 |
| MS.gene48005.t1 | MTR_3g450410 | 81.752 | 274 | 50 | 0 | 1 | 274 | 1 | 274 | 6.20e-173 | 478 |
| MS.gene48005.t1 | MTR_3g063070 | 49.583 | 240 | 121 | 0 | 35 | 274 | 22 | 261 | 2.47e-81 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48005.t1 | AT4G19645 | 70.149 | 268 | 79 | 1 | 8 | 274 | 1 | 268 | 2.79e-142 | 400 |
| MS.gene48005.t1 | AT4G19645 | 70.149 | 268 | 79 | 1 | 8 | 274 | 1 | 268 | 2.79e-142 | 400 |
| MS.gene48005.t1 | AT4G19645 | 70.149 | 268 | 79 | 1 | 8 | 274 | 1 | 268 | 2.79e-142 | 400 |
| MS.gene48005.t1 | AT4G19645 | 70.149 | 268 | 79 | 1 | 8 | 274 | 1 | 268 | 2.79e-142 | 400 |
| MS.gene48005.t1 | AT4G19645 | 70.149 | 268 | 79 | 1 | 8 | 274 | 1 | 268 | 2.79e-142 | 400 |
| MS.gene48005.t1 | AT1G31300 | 65.428 | 269 | 93 | 0 | 5 | 273 | 7 | 275 | 2.88e-131 | 373 |
| MS.gene48005.t1 | AT1G31300 | 65.428 | 269 | 93 | 0 | 5 | 273 | 7 | 275 | 2.88e-131 | 373 |
| MS.gene48005.t1 | AT1G31300 | 65.428 | 269 | 93 | 0 | 5 | 273 | 7 | 275 | 2.88e-131 | 373 |
| MS.gene48005.t1 | AT4G10360 | 48.571 | 245 | 126 | 0 | 30 | 274 | 15 | 259 | 5.07e-86 | 258 |
| MS.gene48005.t1 | AT4G10360 | 48.571 | 245 | 126 | 0 | 30 | 274 | 15 | 259 | 5.07e-86 | 258 |
| MS.gene48005.t1 | AT4G10360 | 48.571 | 245 | 126 | 0 | 30 | 274 | 15 | 259 | 5.07e-86 | 258 |
Find 54 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATATACTTCCATTAT+TGG | 0.172650 | 5.2:-76733784 | MS.gene48005:CDS |
| CTGACTTGGGGATGATATTT+TGG | 0.191833 | 5.2:-76732020 | MS.gene48005:CDS |
| TGCGTTGTCTACGTTTGCTC+TGG | 0.295133 | 5.2:-76733291 | MS.gene48005:CDS |
| GGTTTCTGTTGGTTACTTCA+TGG | 0.300633 | 5.2:-76732043 | MS.gene48005:CDS |
| CCACCAATAATGGAAGTATA+TGG | 0.336930 | 5.2:+76733781 | None:intergenic |
| CAAACAAATTAGCCTGGTTC+TGG | 0.356158 | 5.2:+76733836 | None:intergenic |
| TTCAGCAGATGCACCCCTTT+GGG | 0.368570 | 5.2:-76730728 | MS.gene48005:CDS |
| GTACACGAACAAAAGTATTC+TGG | 0.379427 | 5.2:+76731464 | None:intergenic |
| GTTCAGCAGATGCACCCCTT+TGG | 0.395777 | 5.2:-76730729 | MS.gene48005:CDS |
| CAAAAGCTTATCTCATCAAT+GGG | 0.403192 | 5.2:-76731616 | MS.gene48005:CDS |
| TGTCAGTTATGAACTTGATT+TGG | 0.405632 | 5.2:-76730674 | MS.gene48005:CDS |
| TACCATCTCAAGTTGATTCC+AGG | 0.408827 | 5.2:+76731749 | None:intergenic |
| AACAACAATGTCTTTGTACT+TGG | 0.411039 | 5.2:-76733375 | MS.gene48005:CDS |
| TCAAAAGCTTATCTCATCAA+TGG | 0.412137 | 5.2:-76731617 | MS.gene48005:CDS |
| TGCTTACTTGCACTTTGATC+AGG | 0.414301 | 5.2:-76731430 | MS.gene48005:intron |
| GGCTGGAATAGCTCTTAAAA+TGG | 0.414912 | 5.2:+76733553 | None:intergenic |
| GCGTTGTCTACGTTTGCTCT+GGG | 0.417870 | 5.2:-76733290 | MS.gene48005:CDS |
| GGTTACTTCATGGCTGACTT+GGG | 0.438442 | 5.2:-76732033 | MS.gene48005:CDS |
| ATCTCTGAGACAACAACTCC+TGG | 0.443341 | 5.2:-76731767 | MS.gene48005:CDS |
| ATGGAAGTATATGGAATCAA+AGG | 0.475340 | 5.2:+76733790 | None:intergenic |
| AACGTATTGAGTGGAATAAC+CGG | 0.480032 | 5.2:-76733518 | MS.gene48005:intron |
| TGAAGGTATCTTGATGTAGC+TGG | 0.481580 | 5.2:-76731650 | MS.gene48005:intron |
| ACAACTAGTATTTGCCCAAA+GGG | 0.485721 | 5.2:+76730714 | None:intergenic |
| CCTTCACAAACAAATTAGCC+TGG | 0.487479 | 5.2:+76733830 | None:intergenic |
| TGGTTACTTCATGGCTGACT+TGG | 0.487813 | 5.2:-76732034 | MS.gene48005:CDS |
| TGTGATATTCATTGCTTGGC+TGG | 0.488189 | 5.2:-76731591 | MS.gene48005:intron |
| TATTCAATGTTGAGTGGAGA+AGG | 0.490363 | 5.2:-76731815 | MS.gene48005:CDS |
| CCAGGCTAATTTGTTTGTGA+AGG | 0.491470 | 5.2:-76733830 | MS.gene48005:CDS |
| TTCTCCACTCAACATTGAAT+AGG | 0.506976 | 5.2:+76731817 | None:intergenic |
| GGGTTGTGATATTCATTGCT+TGG | 0.509380 | 5.2:-76731595 | MS.gene48005:CDS |
| ACGTTGGATTCTAGTGAGGC+TGG | 0.514845 | 5.2:+76733536 | None:intergenic |
| CCATATACTTCCATTATTGG+TGG | 0.519713 | 5.2:-76733781 | MS.gene48005:CDS |
| TTCATAACTGACAGCACCAC+TGG | 0.530852 | 5.2:+76730684 | None:intergenic |
| TTATTGCGACAGGTTTCTGT+TGG | 0.538429 | 5.2:-76732054 | MS.gene48005:intron |
| GTTACTTCATGGCTGACTTG+GGG | 0.538892 | 5.2:-76732032 | MS.gene48005:CDS |
| GTTGTCTACGTTTGCTCTGG+GGG | 0.543652 | 5.2:-76733288 | MS.gene48005:intron |
| TGGAAGTATATGGAATCAAA+GGG | 0.550437 | 5.2:+76733791 | None:intergenic |
| CTCCTGGAATCAACTTGAGA+TGG | 0.551944 | 5.2:-76731751 | MS.gene48005:intron |
| GGTTATTCCACTCAATACGT+TGG | 0.581665 | 5.2:+76733520 | None:intergenic |
| TACTCATATCCACCAAGAGC+AGG | 0.583577 | 5.2:+76731991 | None:intergenic |
| CGTTGTCTACGTTTGCTCTG+GGG | 0.587028 | 5.2:-76733289 | MS.gene48005:CDS |
| TTGATGTAGCTGGAATGAAA+AGG | 0.589122 | 5.2:-76731640 | MS.gene48005:CDS |
| CTAGAATCCAACGTATTGAG+TGG | 0.603281 | 5.2:-76733527 | MS.gene48005:CDS |
| ATTCAATGTTGAGTGGAGAA+GGG | 0.619830 | 5.2:-76731814 | MS.gene48005:CDS |
| AACAACTAGTATTTGCCCAA+AGG | 0.624762 | 5.2:+76730713 | None:intergenic |
| AGGGCAGCTGTACACATACA+TGG | 0.625873 | 5.2:-76731795 | MS.gene48005:CDS |
| ATTCAAATCATACCAGAACC+AGG | 0.632366 | 5.2:-76733848 | MS.gene48005:CDS |
| CAGCTGAACTTCTTACAGAA+CGG | 0.632644 | 5.2:-76733319 | MS.gene48005:CDS |
| CAATACGTTGGATTCTAGTG+AGG | 0.649208 | 5.2:+76733532 | None:intergenic |
| GTAGCCTATTCAATGTTGAG+TGG | 0.649521 | 5.2:-76731821 | MS.gene48005:CDS |
| TAATGAAGACATTAGCGAAG+AGG | 0.656512 | 5.2:-76730629 | MS.gene48005:CDS |
| ACTAGTTGTTGTTGTACCAG+TGG | 0.666319 | 5.2:-76730700 | MS.gene48005:CDS |
| CAACTAGTATTTGCCCAAAG+GGG | 0.709004 | 5.2:+76730715 | None:intergenic |
| AAAAGCTTATCTCATCAATG+GGG | 0.737817 | 5.2:-76731615 | MS.gene48005:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAAAAAATTACTAAAAA+AGG | + | chr5.2:76732252-76732271 | None:intergenic | 10.0% |
| !! | ATATACAAATATTTATCAAA+TGG | + | chr5.2:76733559-76733578 | None:intergenic | 10.0% |
| !! | GTAATTATTTAAATCAAATA+TGG | - | chr5.2:76732278-76732297 | MS.gene48005:intron | 10.0% |
| !! | TTATGAGTTTAGATAAATTA+GGG | - | chr5.2:76731352-76731371 | MS.gene48005:intron | 15.0% |
| !!! | TATTTTCCTAAGATAATTTA+AGG | - | chr5.2:76730797-76730816 | MS.gene48005:intron | 15.0% |
| !! | ATTTAATGTGACTTCATATT+TGG | - | chr5.2:76732618-76732637 | MS.gene48005:intron | 20.0% |
| !! | CTAATATAGAAACTAAACTT+GGG | - | chr5.2:76731742-76731761 | MS.gene48005:intron | 20.0% |
| !! | GTTATGAGTTTAGATAAATT+AGG | - | chr5.2:76731351-76731370 | MS.gene48005:intron | 20.0% |
| !! | TACAAATATTTATCAAATGG+TGG | + | chr5.2:76733556-76733575 | None:intergenic | 20.0% |
| !! | TAGTAACCTTAAATTATCTT+AGG | + | chr5.2:76730806-76730825 | None:intergenic | 20.0% |
| !! | TAGTAATTGTTAACATTACA+CGG | - | chr5.2:76731467-76731486 | MS.gene48005:CDS | 20.0% |
| !! | TATGAGTTTAGATAAATTAG+GGG | - | chr5.2:76731353-76731372 | MS.gene48005:intron | 20.0% |
| !! | TCTAATATAGAAACTAAACT+TGG | - | chr5.2:76731741-76731760 | MS.gene48005:intron | 20.0% |
| !! | TTATCAATGATATTTCATCA+TGG | + | chr5.2:76731400-76731419 | None:intergenic | 20.0% |
| !!! | AACTCTTTATTCTGAAATTT+TGG | - | chr5.2:76733153-76733172 | MS.gene48005:intron | 20.0% |
| !!! | AGACATTGTTGTTATAAAAA+CGG | + | chr5.2:76731115-76731134 | None:intergenic | 20.0% |
| !!! | ATTGTAGCTCATATTTTTAT+TGG | - | chr5.2:76732365-76732384 | MS.gene48005:intron | 20.0% |
| !!! | ATTGTTTTGCATTTATTAGT+TGG | + | chr5.2:76731939-76731958 | None:intergenic | 20.0% |
| !!! | GAATTAGTTTTCATATTACT+TGG | + | chr5.2:76731701-76731720 | None:intergenic | 20.0% |
| !!! | TCTAAATTTTCTATTTTTCC+AGG | - | chr5.2:76730890-76730909 | MS.gene48005:intron | 20.0% |
| !!! | TTAATTAAGTTTTTCTACAG+TGG | + | chr5.2:76732335-76732354 | None:intergenic | 20.0% |
| !!! | TTATCAGTTTTTCATTATAC+TGG | - | chr5.2:76732074-76732093 | MS.gene48005:intron | 20.0% |
| !!! | TTCATTTCTTTTGTAATTTC+CGG | - | chr5.2:76733685-76733704 | MS.gene48005:intron | 20.0% |
| !!! | TTTATCCAAGATATCTTTTT+GGG | + | chr5.2:76731916-76731935 | None:intergenic | 20.0% |
| !!! | TTTATTTTATTTATTGCGAC+AGG | - | chr5.2:76732433-76732452 | MS.gene48005:intron | 20.0% |
| ! | AAAGAAAAATCACGACATAA+TGG | + | chr5.2:76732797-76732816 | None:intergenic | 25.0% |
| ! | AACTATACTTAAGTCAAATG+TGG | - | chr5.2:76733586-76733605 | MS.gene48005:CDS | 25.0% |
| ! | AACTCACAATCTAAACAAAT+AGG | - | chr5.2:76731647-76731666 | MS.gene48005:CDS | 25.0% |
| ! | AAGAAAAATCACGACATAAT+GGG | + | chr5.2:76732796-76732815 | None:intergenic | 25.0% |
| ! | ACTCACAATCTAAACAAATA+GGG | - | chr5.2:76731648-76731667 | MS.gene48005:CDS | 25.0% |
| ! | ACTTGACAGTATCAAATATT+AGG | + | chr5.2:76731574-76731593 | None:intergenic | 25.0% |
| ! | AGTAATTGTTAACATTACAC+GGG | - | chr5.2:76731468-76731487 | MS.gene48005:CDS | 25.0% |
| ! | ATACGAACTATATGTATGTA+TGG | + | chr5.2:76733521-76733540 | None:intergenic | 25.0% |
| ! | ATGAGTTTAGATAAATTAGG+GGG | - | chr5.2:76731354-76731373 | MS.gene48005:intron | 25.0% |
| ! | ATTCCATATACTTCCATTAT+TGG | - | chr5.2:76730713-76730732 | MS.gene48005:CDS | 25.0% |
| ! | CCAATATTCAATGATATAAC+AGG | - | chr5.2:76733746-76733765 | MS.gene48005:intron | 25.0% |
| ! | CCTGTTATATCATTGAATAT+TGG | + | chr5.2:76733749-76733768 | None:intergenic | 25.0% |
| ! | CTTGACAGTATCAAATATTA+GGG | + | chr5.2:76731573-76731592 | None:intergenic | 25.0% |
| ! | TCTAAACAAATAGGGAAATA+AGG | - | chr5.2:76731656-76731675 | MS.gene48005:intron | 25.0% |
| ! | TTCATGTATTCCTAAAAGTA+GGG | + | chr5.2:76731629-76731648 | None:intergenic | 25.0% |
| ! | TTGACAGTATCAAATATTAG+GGG | + | chr5.2:76731572-76731591 | None:intergenic | 25.0% |
| !! | AGTAGTATATTTTGTCCATT+TGG | - | chr5.2:76733395-76733414 | MS.gene48005:CDS | 25.0% |
| !! | GGTTTTCAAAGATTATCAAA+GGG | - | chr5.2:76733844-76733863 | MS.gene48005:CDS | 25.0% |
| !! | GTTTATCCAAGATATCTTTT+TGG | + | chr5.2:76731917-76731936 | None:intergenic | 25.0% |
| !! | TGGTTTTCAAAGATTATCAA+AGG | - | chr5.2:76733843-76733862 | MS.gene48005:CDS | 25.0% |
| !! | TTGTTGTTATAAAAACGGAA+TGG | + | chr5.2:76731110-76731129 | None:intergenic | 25.0% |
| !!! | ACTAGTTGTTTTAGAATGAA+AGG | - | chr5.2:76732048-76732067 | MS.gene48005:intron | 25.0% |
| !!! | AGTAATTTGTTGTTTTCATG+TGG | - | chr5.2:76733291-76733310 | MS.gene48005:CDS | 25.0% |
| !!! | GGAAATTTTAGCAGAAAATA+TGG | + | chr5.2:76732231-76732250 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTGTTTTCATGT+GGG | - | chr5.2:76733292-76733311 | MS.gene48005:CDS | 25.0% |
| !!! | TAATTTGTTGTTTTCATGTG+GGG | - | chr5.2:76733293-76733312 | MS.gene48005:CDS | 25.0% |
| AAAAGCTTATCTCATCAATG+GGG | - | chr5.2:76732882-76732901 | MS.gene48005:intron | 30.0% | |
| AAATGAAAAAACTCACTCAC+CGG | + | chr5.2:76731001-76731020 | None:intergenic | 30.0% | |
| AACAACAATGTCTTTGTACT+TGG | - | chr5.2:76731122-76731141 | MS.gene48005:intron | 30.0% | |
| ACATTAAATCATCTCCAGAT+GGG | + | chr5.2:76732607-76732626 | None:intergenic | 30.0% | |
| AGTAATCACATATAATGAGG+AGG | - | chr5.2:76731311-76731330 | MS.gene48005:intron | 30.0% | |
| ATACCTTCACGAACAAAATA+CGG | + | chr5.2:76732836-76732855 | None:intergenic | 30.0% | |
| ATTTCATTCATCACACATTC+TGG | + | chr5.2:76732022-76732041 | None:intergenic | 30.0% | |
| CAAAAGCTTATCTCATCAAT+GGG | - | chr5.2:76732881-76732900 | MS.gene48005:intron | 30.0% | |
| CAAGATCACCTAAAATTTGT+AGG | + | chr5.2:76733337-76733356 | None:intergenic | 30.0% | |
| CACAAGACAATTCTTAAACT+CGG | + | chr5.2:76733110-76733129 | None:intergenic | 30.0% | |
| CACATCTCAAAAAAACCAAA+TGG | + | chr5.2:76733413-76733432 | None:intergenic | 30.0% | |
| GGTAGTAATCACATATAATG+AGG | - | chr5.2:76731308-76731327 | MS.gene48005:intron | 30.0% | |
| GTAATCACATATAATGAGGA+GGG | - | chr5.2:76731312-76731331 | MS.gene48005:intron | 30.0% | |
| GTAATTGTTAACATTACACG+GGG | - | chr5.2:76731469-76731488 | MS.gene48005:CDS | 30.0% | |
| GTTCATGTATTCCTAAAAGT+AGG | + | chr5.2:76731630-76731649 | None:intergenic | 30.0% | |
| TAATCACATATAATGAGGAG+GGG | - | chr5.2:76731313-76731332 | MS.gene48005:intron | 30.0% | |
| TCAAAAGCTTATCTCATCAA+TGG | - | chr5.2:76732880-76732899 | MS.gene48005:intron | 30.0% | |
| TCATGTATTCCTAAAAGTAG+GGG | + | chr5.2:76731628-76731647 | None:intergenic | 30.0% | |
| TCTTGCAAGAGATAAAGAAA+AGG | + | chr5.2:76731270-76731289 | None:intergenic | 30.0% | |
| TGAGTTTAGATAAATTAGGG+GGG | - | chr5.2:76731355-76731374 | MS.gene48005:intron | 30.0% | |
| TGGTTCACATTATATTAGTC+TGG | + | chr5.2:76731992-76732011 | None:intergenic | 30.0% | |
| TGTCAGTTATGAACTTGATT+TGG | - | chr5.2:76733823-76733842 | MS.gene48005:CDS | 30.0% | |
| TTAGACCCAAAAAGATATCT+TGG | - | chr5.2:76731908-76731927 | MS.gene48005:intron | 30.0% | |
| ! | AATGTTGGATTTTACATGCA+TGG | - | chr5.2:76733449-76733468 | MS.gene48005:intron | 30.0% |
| ! | AGACTCGATTTTGTAAACAA+TGG | - | chr5.2:76731287-76731306 | MS.gene48005:intron | 30.0% |
| ! | ATGGAAGTATATGGAATCAA+AGG | + | chr5.2:76730710-76730729 | None:intergenic | 30.0% |
| ! | TAGACTTGTACTCTTTTGTT+TGG | - | chr5.2:76733643-76733662 | MS.gene48005:intron | 30.0% |
| ! | TATTCCTATGCACGATTTTA+AGG | - | chr5.2:76732158-76732177 | MS.gene48005:intron | 30.0% |
| ! | TGGAAGTATATGGAATCAAA+GGG | + | chr5.2:76730709-76730728 | None:intergenic | 30.0% |
| !! | AGACTTGTACTCTTTTGTTT+GGG | - | chr5.2:76733644-76733663 | MS.gene48005:intron | 30.0% |
| !! | CTACAAATTTTAGGTGATCT+TGG | - | chr5.2:76733335-76733354 | MS.gene48005:CDS | 30.0% |
| !! | TCTATGATGTACTTGCTATA+GGG | - | chr5.2:76733267-76733286 | MS.gene48005:intron | 30.0% |
| !! | TTCTATGATGTACTTGCTAT+AGG | - | chr5.2:76733266-76733285 | MS.gene48005:intron | 30.0% |
| !!! | CATTTGGTTTTTTTGAGATG+TGG | - | chr5.2:76733411-76733430 | MS.gene48005:intron | 30.0% |
| !!! | GGAAACACTTTTTTTTCATC+TGG | - | chr5.2:76732386-76732405 | MS.gene48005:intron | 30.0% |
| AAATCTGCATGGTAAATCTG+AGG | - | chr5.2:76733715-76733734 | MS.gene48005:intron | 35.0% | |
| AACAACTAGTATTTGCCCAA+AGG | + | chr5.2:76733787-76733806 | None:intergenic | 35.0% | |
| AACGTATTGAGTGGAATAAC+CGG | - | chr5.2:76730979-76730998 | MS.gene48005:intron | 35.0% | |
| AATCTGCATGGTAAATCTGA+GGG | - | chr5.2:76733716-76733735 | MS.gene48005:intron | 35.0% | |
| ACAACTAGTATTTGCCCAAA+GGG | + | chr5.2:76733786-76733805 | None:intergenic | 35.0% | |
| AGCAAAAATGCCACCAATAA+TGG | + | chr5.2:76730729-76730748 | None:intergenic | 35.0% | |
| ATGACCTTAAAATCGTGCAT+AGG | + | chr5.2:76732165-76732184 | None:intergenic | 35.0% | |
| ATTCAAATCATACCAGAACC+AGG | - | chr5.2:76730649-76730668 | MS.gene48005:CDS | 35.0% | |
| ATTCAATGTTGAGTGGAGAA+GGG | - | chr5.2:76732683-76732702 | MS.gene48005:intron | 35.0% | |
| ATTTATCAAATGGTGGTCAG+AGG | + | chr5.2:76733549-76733568 | None:intergenic | 35.0% | |
| CACATTAAATCATCTCCAGA+TGG | + | chr5.2:76732608-76732627 | None:intergenic | 35.0% | |
| CCATATACTTCCATTATTGG+TGG | - | chr5.2:76730716-76730735 | MS.gene48005:CDS | 35.0% | |
| GTGATCTTGTAGGCAAAAAA+TGG | + | chr5.2:76733231-76733250 | None:intergenic | 35.0% | |
| TAAGAATTGTCTTGTGTCTC+TGG | - | chr5.2:76733114-76733133 | MS.gene48005:intron | 35.0% | |
| TAATGAAGACATTAGCGAAG+AGG | - | chr5.2:76733868-76733887 | MS.gene48005:CDS | 35.0% | |
| TAGGAGTGAATCTTGAATGT+TGG | - | chr5.2:76733434-76733453 | MS.gene48005:intron | 35.0% | |
| TATTCAATGTTGAGTGGAGA+AGG | - | chr5.2:76732682-76732701 | MS.gene48005:intron | 35.0% | |
| TCACACATTCTGGATTCATA+TGG | + | chr5.2:76732012-76732031 | None:intergenic | 35.0% | |
| TGCAAAACAATCGACCAATA+AGG | - | chr5.2:76731948-76731967 | MS.gene48005:intron | 35.0% | |
| TGTTGAGAAAGTGATCTTGT+AGG | + | chr5.2:76733241-76733260 | None:intergenic | 35.0% | |
| TTCTCCACTCAACATTGAAT+AGG | + | chr5.2:76732683-76732702 | None:intergenic | 35.0% | |
| TTCTTCAGCATGAACCTTAT+TGG | + | chr5.2:76731965-76731984 | None:intergenic | 35.0% | |
| TTGATGTAGCTGGAATGAAA+AGG | - | chr5.2:76732857-76732876 | MS.gene48005:intron | 35.0% | |
| ! | CCACCAATAATGGAAGTATA+TGG | + | chr5.2:76730719-76730738 | None:intergenic | 35.0% |
| ! | GATCATGGCCTACAAATTTT+AGG | - | chr5.2:76733326-76733345 | MS.gene48005:CDS | 35.0% |
| ! | TGGCTCTATTAGCAAAATGA+AGG | + | chr5.2:76732315-76732334 | None:intergenic | 35.0% |
| ! | TGTGACTTCATATTTGGTTC+AGG | - | chr5.2:76732624-76732643 | MS.gene48005:intron | 35.0% |
| ! | TTGGTGGATATGAGTATGTA+AGG | - | chr5.2:76732513-76732532 | MS.gene48005:intron | 35.0% |
| ! | TTTCCGTATTTTGTTCGTGA+AGG | - | chr5.2:76732830-76732849 | MS.gene48005:intron | 35.0% |
| !! | AATTCTTAAACTCGGTGTGT+CGG | + | chr5.2:76733102-76733121 | None:intergenic | 35.0% |
| !! | ATGCATGGATTAGAGATTAG+TGG | - | chr5.2:76733464-76733483 | MS.gene48005:intron | 35.0% |
| !! | CTATGATGTACTTGCTATAG+GGG | - | chr5.2:76733268-76733287 | MS.gene48005:intron | 35.0% |
| !! | GTACACGAACAAAAGTATTC+TGG | + | chr5.2:76733036-76733055 | None:intergenic | 35.0% |
| !! | GTACTCTTTTGTTTGGGATT+TGG | - | chr5.2:76733650-76733669 | MS.gene48005:intron | 35.0% |
| !!! | TGGTTTTTTTGAGATGTGGT+AGG | - | chr5.2:76733415-76733434 | MS.gene48005:intron | 35.0% |
| !!! | TTTTGGTTTTTTCCTGCTCT+TGG | - | chr5.2:76732494-76732513 | MS.gene48005:intron | 35.0% |
| AATATTAGGGGACGTAAACC+TGG | + | chr5.2:76731560-76731579 | None:intergenic | 40.0% | |
| ATATTCATTGCTTGGCTGGT+AGG | - | chr5.2:76732910-76732929 | MS.gene48005:intron | 40.0% | |
| CAACTAGTATTTGCCCAAAG+GGG | + | chr5.2:76733785-76733804 | None:intergenic | 40.0% | |
| CAATACGTTGGATTCTAGTG+AGG | + | chr5.2:76730968-76730987 | None:intergenic | 40.0% | |
| CAGCTGAACTTCTTACAGAA+CGG | - | chr5.2:76731178-76731197 | MS.gene48005:intron | 40.0% | |
| CCTTCACAAACAAATTAGCC+TGG | + | chr5.2:76730670-76730689 | None:intergenic | 40.0% | |
| CCTTTGCACCTAAAACTTGT+AGG | + | chr5.2:76733361-76733380 | None:intergenic | 40.0% | |
| CTAGAATCCAACGTATTGAG+TGG | - | chr5.2:76730970-76730989 | MS.gene48005:intron | 40.0% | |
| GGCTGGAATAGCTCTTAAAA+TGG | + | chr5.2:76730947-76730966 | None:intergenic | 40.0% | |
| GGGTTGTGATATTCATTGCT+TGG | - | chr5.2:76732902-76732921 | MS.gene48005:intron | 40.0% | |
| GGTTATTCCACTCAATACGT+TGG | + | chr5.2:76730980-76730999 | None:intergenic | 40.0% | |
| GTAGCCTATTCAATGTTGAG+TGG | - | chr5.2:76732676-76732695 | MS.gene48005:intron | 40.0% | |
| TGCTTACTTGCACTTTGATC+AGG | - | chr5.2:76733067-76733086 | MS.gene48005:intron | 40.0% | |
| TGTGATATTCATTGCTTGGC+TGG | - | chr5.2:76732906-76732925 | MS.gene48005:intron | 40.0% | |
| TTAACATTACACGGGGAGTT+GGG | - | chr5.2:76731476-76731495 | MS.gene48005:intron | 40.0% | |
| TTATTGCGACAGGTTTCTGT+TGG | - | chr5.2:76732443-76732462 | MS.gene48005:intron | 40.0% | |
| TTTCATGTGGGGAAGAAAGT+GGG | - | chr5.2:76733304-76733323 | MS.gene48005:CDS | 40.0% | |
| ! | ACTAGTTGTTGTTGTACCAG+TGG | - | chr5.2:76733797-76733816 | MS.gene48005:CDS | 40.0% |
| ! | ATACTGTCAAGTCACTGACT+TGG | - | chr5.2:76731582-76731601 | MS.gene48005:intron | 40.0% |
| ! | CAAACAAATTAGCCTGGTTC+TGG | + | chr5.2:76730664-76730683 | None:intergenic | 40.0% |
| ! | GATCTTGGCCTACAAGTTTT+AGG | - | chr5.2:76733350-76733369 | MS.gene48005:CDS | 40.0% |
| ! | GGTTTCTGTTGGTTACTTCA+TGG | - | chr5.2:76732454-76732473 | MS.gene48005:intron | 40.0% |
| ! | TGGCATTTTTGCTTGCAAGA+TGG | - | chr5.2:76730736-76730755 | MS.gene48005:intron | 40.0% |
| ! | TTTTCATGTGGGGAAGAAAG+TGG | - | chr5.2:76733303-76733322 | MS.gene48005:CDS | 40.0% |
| !! | CCAGGCTAATTTGTTTGTGA+AGG | - | chr5.2:76730667-76730686 | MS.gene48005:CDS | 40.0% |
| !! | GCTTAGTAAGCTTTAGCTTG+AGG | + | chr5.2:76731833-76731852 | None:intergenic | 40.0% |
| !! | TACCATCTCAAGTTGATTCC+AGG | + | chr5.2:76732751-76732770 | None:intergenic | 40.0% |
| !! | TAGTAAGCTTTAGCTTGAGG+AGG | + | chr5.2:76731830-76731849 | None:intergenic | 40.0% |
| !! | TGAAGGTATCTTGATGTAGC+TGG | - | chr5.2:76732847-76732866 | MS.gene48005:intron | 40.0% |
| !!! | CCTACAAGTTTTAGGTGCAA+AGG | - | chr5.2:76733358-76733377 | MS.gene48005:CDS | 40.0% |
| !!! | CTGACTTGGGGATGATATTT+TGG | - | chr5.2:76732477-76732496 | MS.gene48005:intron | 40.0% |
| CTCCTGGAATCAACTTGAGA+TGG | - | chr5.2:76732746-76732765 | MS.gene48005:intron | 45.0% | |
| GAGTTAAGAGCAGCGTGATA+AGG | + | chr5.2:76731518-76731537 | None:intergenic | 45.0% | |
| GAGTTCTCATTATTCCGCTC+TGG | - | chr5.2:76732980-76732999 | MS.gene48005:intron | 45.0% | |
| GCTGAGTAAGATCATAGACC+TGG | + | chr5.2:76730911-76730930 | None:intergenic | 45.0% | |
| GTTAACATTACACGGGGAGT+TGG | - | chr5.2:76731475-76731494 | MS.gene48005:intron | 45.0% | |
| TACTCATATCCACCAAGAGC+AGG | + | chr5.2:76732509-76732528 | None:intergenic | 45.0% | |
| TGCTTACCGAAACTATCTGC+AGG | - | chr5.2:76733007-76733026 | MS.gene48005:intron | 45.0% | |
| TGGCAACCTGCAGATAGTTT+CGG | + | chr5.2:76733016-76733035 | None:intergenic | 45.0% | |
| TGGTTACTTCATGGCTGACT+TGG | - | chr5.2:76732463-76732482 | MS.gene48005:intron | 45.0% | |
| TTAAGAGCAGCGTGATAAGG+AGG | + | chr5.2:76731515-76731534 | None:intergenic | 45.0% | |
| TTCATAACTGACAGCACCAC+TGG | + | chr5.2:76733816-76733835 | None:intergenic | 45.0% | |
| ! | CCATGCAGATTTTGCTTGAC+CGG | + | chr5.2:76733707-76733726 | None:intergenic | 45.0% |
| ! | GGTTACTTCATGGCTGACTT+GGG | - | chr5.2:76732464-76732483 | MS.gene48005:intron | 45.0% |
| ! | GTAAACCTGGTTTGATGGCT+GGG | + | chr5.2:76731547-76731566 | None:intergenic | 45.0% |
| ! | TAAACCTGGTTTGATGGCTG+GGG | + | chr5.2:76731546-76731565 | None:intergenic | 45.0% |
| ! | TCACTTGATAGCAACCCATC+TGG | - | chr5.2:76732590-76732609 | MS.gene48005:intron | 45.0% |
| !! | ACACACTAGCCCCTACTTTT+AGG | - | chr5.2:76731616-76731635 | MS.gene48005:CDS | 45.0% |
| !! | ATCTCTGAGACAACAACTCC+TGG | - | chr5.2:76732730-76732749 | MS.gene48005:intron | 45.0% |
| !! | GTTACTTCATGGCTGACTTG+GGG | - | chr5.2:76732465-76732484 | MS.gene48005:intron | 45.0% |
| !!! | TGGTTTTTTCCTGCTCTTGG+TGG | - | chr5.2:76732497-76732516 | MS.gene48005:intron | 45.0% |
| !!! | AAAATTTAGATTTTTTTTTT+TGG | + | chr5.2:76730880-76730899 | None:intergenic | 5.0% |
| ACGTTGGATTCTAGTGAGGC+TGG | + | chr5.2:76730964-76730983 | None:intergenic | 50.0% | |
| AGGGCAGCTGTACACATACA+TGG | - | chr5.2:76732702-76732721 | MS.gene48005:intron | 50.0% | |
| CCGGTCAAGCAAAATCTGCA+TGG | - | chr5.2:76733704-76733723 | MS.gene48005:intron | 50.0% | |
| CGTTGTCTACGTTTGCTCTG+GGG | - | chr5.2:76731208-76731227 | MS.gene48005:intron | 50.0% | |
| GCGTTGTCTACGTTTGCTCT+GGG | - | chr5.2:76731207-76731226 | MS.gene48005:intron | 50.0% | |
| GTTGTCTACGTTTGCTCTGG+GGG | - | chr5.2:76731209-76731228 | MS.gene48005:intron | 50.0% | |
| TCTGGGGGTAAGAATGGTCT+TGG | - | chr5.2:76731224-76731243 | MS.gene48005:intron | 50.0% | |
| TGCGTTGTCTACGTTTGCTC+TGG | - | chr5.2:76731206-76731225 | MS.gene48005:intron | 50.0% | |
| TGGGGAAGAAAGTGGGATCA+TGG | - | chr5.2:76733311-76733330 | MS.gene48005:CDS | 50.0% | |
| TTCAGCAGATGCACCCCTTT+GGG | - | chr5.2:76733769-76733788 | MS.gene48005:CDS | 50.0% | |
| ! | CGTAAACCTGGTTTGATGGC+TGG | + | chr5.2:76731548-76731567 | None:intergenic | 50.0% |
| ! | GGGACGTAAACCTGGTTTGA+TGG | + | chr5.2:76731552-76731571 | None:intergenic | 50.0% |
| !! | GTTTGCTCTGGGGGTAAGAA+TGG | - | chr5.2:76731218-76731237 | MS.gene48005:intron | 50.0% |
| CAGCGTGATAAGGAGGTCGA+GGG | + | chr5.2:76731508-76731527 | None:intergenic | 55.0% | |
| GTTCAGCAGATGCACCCCTT+TGG | - | chr5.2:76733768-76733787 | MS.gene48005:CDS | 55.0% | |
| TCGGTAAGCATGTGCCAGAG+CGG | + | chr5.2:76732997-76733016 | None:intergenic | 55.0% | |
| GCAGCGTGATAAGGAGGTCG+AGG | + | chr5.2:76731509-76731528 | None:intergenic | 60.0% | |
| TCCACCCCAGCCATCAAACC+AGG | - | chr5.2:76731539-76731558 | MS.gene48005:intron | 60.0% | |
| ! | ACCTGGTTTGATGGCTGGGG+TGG | + | chr5.2:76731543-76731562 | None:intergenic | 60.0% |
| ! | TGGTTTGATGGCTGGGGTGG+AGG | + | chr5.2:76731540-76731559 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 76730623 | 76733896 | 76730623 | ID=MS.gene48005 |
| chr5.2 | mRNA | 76730623 | 76733896 | 76730623 | ID=MS.gene48005.t1;Parent=MS.gene48005 |
| chr5.2 | exon | 76733762 | 76733896 | 76733762 | ID=MS.gene48005.t1.exon1;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76733762 | 76733896 | 76733762 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| chr5.2 | exon | 76733519 | 76733607 | 76733519 | ID=MS.gene48005.t1.exon2;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76733519 | 76733607 | 76733519 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| chr5.2 | exon | 76733289 | 76733427 | 76733289 | ID=MS.gene48005.t1.exon3;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76733289 | 76733427 | 76733289 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| chr5.2 | exon | 76731990 | 76732064 | 76731990 | ID=MS.gene48005.t1.exon4;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76731990 | 76732064 | 76731990 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| chr5.2 | exon | 76731752 | 76731873 | 76731752 | ID=MS.gene48005.t1.exon5;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76731752 | 76731873 | 76731752 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| chr5.2 | exon | 76731592 | 76731667 | 76731592 | ID=MS.gene48005.t1.exon6;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76731592 | 76731667 | 76731592 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| chr5.2 | exon | 76731431 | 76731490 | 76731431 | ID=MS.gene48005.t1.exon7;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76731431 | 76731490 | 76731431 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| chr5.2 | exon | 76730623 | 76730751 | 76730623 | ID=MS.gene48005.t1.exon8;Parent=MS.gene48005.t1 |
| chr5.2 | CDS | 76730623 | 76730751 | 76730623 | ID=cds.MS.gene48005.t1;Parent=MS.gene48005.t1 |
| Gene Sequence |
| Protein sequence |
