Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48408.t1 | XP_003602909.1 | 98 | 710 | 9 | 1 | 1 | 710 | 12 | 716 | 0.00E+00 | 1276.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48408.t1 | Q56X46 | 53.0 | 709 | 288 | 11 | 1 | 706 | 1 | 667 | 5.4e-186 | 652.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48408.t1 | G7J535 | 98.0 | 710 | 9 | 1 | 1 | 710 | 12 | 716 | 0.0e+00 | 1276.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052153 | MS.gene48408 | 0.937433 | 3.49E-98 | -1.69E-46 |
| MS.gene052155 | MS.gene48408 | 0.939067 | 2.36E-99 | -1.69E-46 |
| MS.gene05894 | MS.gene48408 | -0.803295 | 3.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48408.t1 | MTR_3g100280 | 98.028 | 710 | 9 | 1 | 1 | 710 | 12 | 716 | 0.0 | 1430 |
| MS.gene48408.t1 | MTR_3g100280 | 98.734 | 553 | 7 | 0 | 158 | 710 | 1 | 553 | 0.0 | 1126 |
| MS.gene48408.t1 | MTR_5g032090 | 54.080 | 723 | 281 | 13 | 1 | 694 | 1 | 701 | 0.0 | 751 |
| MS.gene48408.t1 | MTR_3g100320 | 62.003 | 579 | 205 | 8 | 1 | 574 | 1 | 569 | 0.0 | 714 |
| MS.gene48408.t1 | MTR_3g100320 | 63.070 | 417 | 149 | 5 | 1 | 416 | 13 | 425 | 0.0 | 546 |
| MS.gene48408.t1 | MTR_3g100300 | 37.799 | 209 | 78 | 9 | 312 | 510 | 133 | 299 | 1.02e-19 | 91.3 |
| MS.gene48408.t1 | MTR_3g099260 | 42.697 | 89 | 48 | 2 | 335 | 423 | 76 | 161 | 3.15e-16 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48408.t1 | AT1G58200 | 55.489 | 665 | 272 | 11 | 27 | 682 | 26 | 675 | 0.0 | 729 |
| MS.gene48408.t1 | AT1G58200 | 55.489 | 665 | 272 | 11 | 27 | 682 | 26 | 675 | 0.0 | 729 |
| MS.gene48408.t1 | AT5G10490 | 54.712 | 711 | 273 | 13 | 1 | 706 | 1 | 667 | 0.0 | 719 |
| MS.gene48408.t1 | AT5G10490 | 55.930 | 683 | 255 | 12 | 29 | 706 | 24 | 665 | 0.0 | 715 |
| MS.gene48408.t1 | AT5G10490 | 56.130 | 677 | 251 | 12 | 35 | 706 | 4 | 639 | 0.0 | 714 |
| MS.gene48408.t1 | AT4G00290 | 26.291 | 213 | 141 | 6 | 250 | 454 | 286 | 490 | 4.81e-12 | 69.3 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTGCCTTTGCTGTTTA+TGG | 0.117984 | 3.1:+79737439 | MS.gene48408:CDS |
| TGCAAAATTCTCATCACTTT+TGG | 0.160964 | 3.1:-79741753 | None:intergenic |
| ATTGAGGGGTATAAGGTTTC+TGG | 0.194350 | 3.1:+79739360 | MS.gene48408:CDS |
| TCTTCACCATTAACTTTATA+CGG | 0.230735 | 3.1:-79741650 | None:intergenic |
| GTCTGAGATGGCAGGATTAT+TGG | 0.231716 | 3.1:-79737800 | None:intergenic |
| TCCTTGGAGTTTACACTAGA+TGG | 0.266948 | 3.1:-79741791 | None:intergenic |
| AAGAAGAATATTCTCTTCTA+AGG | 0.269634 | 3.1:-79742098 | None:intergenic |
| ATCCACTCATTCAATATAAA+TGG | 0.277217 | 3.1:-79739327 | None:intergenic |
| GGAATCAATCGAAGCAAAAT+AGG | 0.284248 | 3.1:-79737406 | None:intergenic |
| GAACCACCGTATAAAGTTAA+TGG | 0.285284 | 3.1:+79741644 | MS.gene48408:CDS |
| AACAAAGATTGAGGGGTATA+AGG | 0.285821 | 3.1:+79739353 | MS.gene48408:CDS |
| TTATTGCCTTTGCTGTTTAT+GGG | 0.298393 | 3.1:+79737440 | MS.gene48408:CDS |
| TAGGTCATATGATTCTTTAT+TGG | 0.307183 | 3.1:+79737378 | MS.gene48408:intron |
| CTAGATGGCGCATGCCTTGT+TGG | 0.308296 | 3.1:-79735710 | None:intergenic |
| AGCTGATATGCGCAAGGTTT+TGG | 0.309117 | 3.1:+79739861 | MS.gene48408:CDS |
| TGCTGCTGTGTCATTATTCA+TGG | 0.310689 | 3.1:+79738955 | MS.gene48408:CDS |
| TGGTTAACTGCTGGTGGTTT+GGG | 0.312167 | 3.1:+79739004 | MS.gene48408:CDS |
| TTAGAAGAGAATATTCTTCT+TGG | 0.319652 | 3.1:+79742100 | MS.gene48408:CDS |
| AACTATCAGAACCCATGTTC+TGG | 0.320526 | 3.1:-79741844 | None:intergenic |
| CTTCTTGGGGTTGCACTTGA+AGG | 0.322534 | 3.1:+79742115 | MS.gene48408:CDS |
| TGCTCTGGATCGAGTGAAAA+TGG | 0.324671 | 3.1:-79741594 | None:intergenic |
| GAAACAGGAGGCAATCCTTT+TGG | 0.327663 | 3.1:+79741463 | MS.gene48408:intron |
| TCCGGATGGGAGTGGCTAAC+CGG | 0.331872 | 3.1:-79741517 | None:intergenic |
| TAGATGGCGCATGCCTTGTT+GGG | 0.335717 | 3.1:-79735709 | None:intergenic |
| TAGAAGAGAATATTCTTCTT+GGG | 0.339763 | 3.1:+79742101 | MS.gene48408:CDS |
| AGCAATATACACTGCTGTTT+GGG | 0.342027 | 3.1:+79738931 | MS.gene48408:CDS |
| AAGCAATATACACTGCTGTT+TGG | 0.345518 | 3.1:+79738930 | MS.gene48408:CDS |
| AGGTCATATGATTCTTTATT+GGG | 0.349745 | 3.1:+79737379 | MS.gene48408:intron |
| AGGCTCAAAACTAGTAATAA+TGG | 0.353567 | 3.1:+79735293 | MS.gene48408:CDS |
| CGGGCGATTCACTGCTGCTC+TGG | 0.357040 | 3.1:-79741609 | None:intergenic |
| CAGCCATTATTATTGTGGAC+TGG | 0.362516 | 3.1:+79737675 | MS.gene48408:CDS |
| GGATTCATTTCTTCCTCAAT+TGG | 0.382478 | 3.1:-79742154 | None:intergenic |
| CCTCGGAAAATATACCCTTT+GGG | 0.382562 | 3.1:+79741567 | MS.gene48408:CDS |
| ACGATCATCACCTCTAATAA+TGG | 0.384373 | 3.1:-79739600 | None:intergenic |
| GCCTCGGAAAATATACCCTT+TGG | 0.385437 | 3.1:+79741566 | MS.gene48408:CDS |
| GCCCCAGTCCACAATAATAA+TGG | 0.387380 | 3.1:-79737678 | None:intergenic |
| CTACCGGGTGGTGGAGGGAG+TGG | 0.388142 | 3.1:+79735764 | MS.gene48408:CDS |
| GCCATCCTACCGGGTGGTGG+AGG | 0.388405 | 3.1:+79735758 | MS.gene48408:CDS |
| TCTTGTGACTCAGCCGAGTT+AGG | 0.388980 | 3.1:-79742181 | None:intergenic |
| ACAGTATTGCTCACTCTTGC+CGG | 0.390378 | 3.1:+79739028 | MS.gene48408:CDS |
| GACTCATGGTTAGTAATAAC+AGG | 0.390821 | 3.1:-79741986 | None:intergenic |
| GTGGTTAACTGCTGGTGGTT+TGG | 0.396659 | 3.1:+79739003 | MS.gene48408:CDS |
| TGAGGAGTACCTTTGTGTTA+AGG | 0.398606 | 3.1:+79740675 | MS.gene48408:CDS |
| ACATACATTTCTTGCATCAC+TGG | 0.405151 | 3.1:-79738527 | None:intergenic |
| TTGACAGTGAACTTGTGATT+AGG | 0.406344 | 3.1:-79739638 | None:intergenic |
| AGCCATTATTATTGTGGACT+GGG | 0.408214 | 3.1:+79737676 | MS.gene48408:CDS |
| TCCTTCTTATCTTTGTTAGC+AGG | 0.413944 | 3.1:-79742235 | None:intergenic |
| CTTTGACTTGGACTTATCCT+TGG | 0.417001 | 3.1:-79741807 | None:intergenic |
| CATTTGCTTACTGTTTATCA+AGG | 0.428109 | 3.1:+79737882 | MS.gene48408:CDS |
| ATATAAATGGCCGAGTTGTA+TGG | 0.432347 | 3.1:-79739314 | None:intergenic |
| CCACGAGTTGAACGAGTTGA+CGG | 0.433490 | 3.1:-79741683 | None:intergenic |
| CAACAAGGCATGCGCCATCT+AGG | 0.438226 | 3.1:+79735711 | MS.gene48408:CDS |
| AGCCACTACTTCGTCTCAGC+AGG | 0.445866 | 3.1:+79737467 | MS.gene48408:CDS |
| ACTATCAGAACCCATGTTCT+GGG | 0.446447 | 3.1:-79741843 | None:intergenic |
| ATGTCGCTCTGCCATCCTAC+CGG | 0.447780 | 3.1:+79735748 | MS.gene48408:CDS |
| TCCTGAAAACACAGCTCTAA+AGG | 0.450592 | 3.1:+79739945 | MS.gene48408:CDS |
| TTACTAACCATGAGTCTAGC+AGG | 0.459792 | 3.1:+79741993 | MS.gene48408:CDS |
| TCATTATTCATGGAGTTGCT+AGG | 0.467872 | 3.1:+79738965 | MS.gene48408:CDS |
| CTTCGATTGATTCCAGCCCT+TGG | 0.468132 | 3.1:+79737415 | MS.gene48408:CDS |
| CGAGAAAATTGCATAGAACC+TGG | 0.470723 | 3.1:-79735263 | None:intergenic |
| GCATTTGGAAATGAAGAGGT+TGG | 0.471934 | 3.1:-79742262 | None:intergenic |
| TTGCTTTCCCAGCAAAATCA+AGG | 0.476830 | 3.1:-79738913 | None:intergenic |
| TGGTCACCAACCATTATTAG+AGG | 0.477341 | 3.1:+79739590 | MS.gene48408:CDS |
| CCCGGTTAGCCACTCCCATC+CGG | 0.482156 | 3.1:+79741516 | MS.gene48408:CDS |
| GAGTTTGCTGTCCAACGGAA+TGG | 0.486188 | 3.1:+79742202 | MS.gene48408:CDS |
| TCCTGCTAACAAAGATAAGA+AGG | 0.488760 | 3.1:+79742234 | MS.gene48408:CDS |
| TACATGATGCTGAAAACTAC+GGG | 0.491533 | 3.1:-79735318 | None:intergenic |
| ATCTGACTCAGAAATCTCAT+TGG | 0.494433 | 3.1:+79739672 | MS.gene48408:CDS |
| TATGGATCATTATACTTGAA+AGG | 0.495848 | 3.1:-79739296 | None:intergenic |
| AATTTCTGTTGCTCCACTTG+AGG | 0.495916 | 3.1:-79739892 | None:intergenic |
| ACTGCAGAAGATGTAGGAAA+AGG | 0.496072 | 3.1:+79741908 | MS.gene48408:CDS |
| CCCTCCACCACCCGGTAGGA+TGG | 0.496972 | 3.1:-79735759 | None:intergenic |
| GAATCAATCGAAGCAAAATA+GGG | 0.497586 | 3.1:-79737405 | None:intergenic |
| CCGGATGGGAGTGGCTAACC+GGG | 0.500022 | 3.1:-79741516 | None:intergenic |
| TTCTTATCTTTGTTAGCAGG+AGG | 0.502177 | 3.1:-79742232 | None:intergenic |
| TAAGGTTTCTGGCACTGTTG+AGG | 0.502672 | 3.1:+79739371 | MS.gene48408:CDS |
| GTGGTTCTATTAGTAAGAAC+GGG | 0.504498 | 3.1:-79741628 | None:intergenic |
| AGTTTGCTGTCCAACGGAAT+GGG | 0.505163 | 3.1:+79742203 | MS.gene48408:CDS |
| CCATCCTACCGGGTGGTGGA+GGG | 0.505615 | 3.1:+79735759 | MS.gene48408:CDS |
| TCTGCCATCCTACCGGGTGG+TGG | 0.506157 | 3.1:+79735755 | MS.gene48408:CDS |
| CCTGCCATCTCAGACTAGTC+AGG | 0.507836 | 3.1:+79737808 | MS.gene48408:CDS |
| TACCGGGTGGTGGAGGGAGT+GGG | 0.509448 | 3.1:+79735765 | MS.gene48408:CDS |
| CAACTCTGAGAAGATCCAAA+AGG | 0.513442 | 3.1:-79741478 | None:intergenic |
| GCTGTCCAACGGAATGGGAA+TGG | 0.514341 | 3.1:+79742208 | MS.gene48408:CDS |
| GGCCATTTATATTGAATGAG+TGG | 0.514735 | 3.1:+79739325 | MS.gene48408:CDS |
| CTGAACTGTCCGGATGGGAG+TGG | 0.519563 | 3.1:-79741525 | None:intergenic |
| TTGAGCATCAGACTTTGACT+TGG | 0.526242 | 3.1:-79741819 | None:intergenic |
| TTACATTTCTATCAGTCACT+TGG | 0.527731 | 3.1:+79739706 | MS.gene48408:CDS |
| TTCAGAGGACTGACAGCAGT+TGG | 0.529245 | 3.1:+79737613 | MS.gene48408:intron |
| GCAAGATGAAGAGAAATCTT+CGG | 0.529586 | 3.1:+79742051 | MS.gene48408:CDS |
| CTGGGGCAATGCTCATATGC+AGG | 0.532365 | 3.1:+79737694 | MS.gene48408:CDS |
| TGGATTCAAACAAAGATTGA+GGG | 0.532585 | 3.1:+79739345 | MS.gene48408:CDS |
| TCAGAAACTACACTATGTGC+AGG | 0.532696 | 3.1:-79741956 | None:intergenic |
| GTGGATTCAAACAAAGATTG+AGG | 0.532984 | 3.1:+79739344 | MS.gene48408:CDS |
| TGATGCTCAAACCCAGAACA+TGG | 0.533483 | 3.1:+79741832 | MS.gene48408:CDS |
| CTCGGAAAATATACCCTTTG+GGG | 0.533597 | 3.1:+79741568 | MS.gene48408:CDS |
| TGTCGCTCTGCCATCCTACC+GGG | 0.537547 | 3.1:+79735749 | MS.gene48408:CDS |
| CATTTGACAGAATCCGGCGC+GGG | 0.537802 | 3.1:+79735430 | MS.gene48408:intron |
| GAGGTCCATTCCCATTCCGT+TGG | 0.538198 | 3.1:-79742213 | None:intergenic |
| AGCAACAGAAATTGCACAGA+AGG | 0.539152 | 3.1:+79739902 | MS.gene48408:CDS |
| CGTGTACTCCACGTAAAAGA+TGG | 0.539288 | 3.1:-79735685 | None:intergenic |
| CTTAGCATTTGGAAATGAAG+AGG | 0.540708 | 3.1:-79742266 | None:intergenic |
| GACTCAGCCGAGTTAGGAGA+TGG | 0.546014 | 3.1:-79742175 | None:intergenic |
| AAAGAAACTGCAGAAGATGT+AGG | 0.549434 | 3.1:+79741902 | MS.gene48408:CDS |
| GTCCCACTCCCTCCACCACC+CGG | 0.553788 | 3.1:-79735767 | None:intergenic |
| TGACAGAATCCGGCGCGGGT+TGG | 0.555558 | 3.1:+79735434 | MS.gene48408:intron |
| TTGTCAGTCATCATCGAGCC+CGG | 0.555870 | 3.1:+79741498 | MS.gene48408:CDS |
| AGAAGAGAATATTCTTCTTG+GGG | 0.555945 | 3.1:+79742102 | MS.gene48408:CDS |
| TGTCTGCCCTGCTAGACTCA+TGG | 0.556999 | 3.1:-79742000 | None:intergenic |
| AAGGCAATAATACCAAGGGC+TGG | 0.559924 | 3.1:-79737427 | None:intergenic |
| GTGAAAATGGAATCCCCAAA+GGG | 0.563083 | 3.1:-79741581 | None:intergenic |
| TGTAATCGTCCAACCCGCGC+CGG | 0.565322 | 3.1:-79735443 | None:intergenic |
| AGAATATTCTCTTCTAAGGG+AGG | 0.566683 | 3.1:-79742094 | None:intergenic |
| TGCCACAGGTTCATCAACCT+TGG | 0.570082 | 3.1:-79741723 | None:intergenic |
| ATACATGATGCTGAAAACTA+CGG | 0.570217 | 3.1:-79735319 | None:intergenic |
| AGAAGAATATTCTCTTCTAA+GGG | 0.571417 | 3.1:-79742097 | None:intergenic |
| GGAGGTTTAACTGCTGATGA+TGG | 0.571460 | 3.1:-79742076 | None:intergenic |
| CACAAGAGTTTGCTGTCCAA+CGG | 0.571868 | 3.1:+79742197 | MS.gene48408:CDS |
| CAGAAACTACACTATGTGCA+GGG | 0.572356 | 3.1:-79741955 | None:intergenic |
| AATATACAGTGAGCCTGCCT+CGG | 0.575648 | 3.1:+79741550 | MS.gene48408:CDS |
| ACACAGAAGTGGTTAACTGC+TGG | 0.580779 | 3.1:+79738995 | MS.gene48408:CDS |
| GCTAACAAAGATAAGAAGGA+TGG | 0.580826 | 3.1:+79742238 | MS.gene48408:CDS |
| GGTGGTTCTATTAGTAAGAA+CGG | 0.584350 | 3.1:-79741629 | None:intergenic |
| ATTTCAACAATGGCGTACCC+AGG | 0.586378 | 3.1:+79735245 | None:intergenic |
| ACAGTGGTGTACCTCTCGAC+CGG | 0.589587 | 3.1:-79739047 | None:intergenic |
| AGATGGCGCATGCCTTGTTG+GGG | 0.590773 | 3.1:-79735708 | None:intergenic |
| TCCATCTAGTGTAAACTCCA+AGG | 0.591305 | 3.1:+79741790 | MS.gene48408:CDS |
| AGTGCGCGGTAAAAGATTCG+TGG | 0.592576 | 3.1:-79735474 | None:intergenic |
| CCGTCAACTCGTTCAACTCG+TGG | 0.592850 | 3.1:+79741683 | MS.gene48408:CDS |
| CCTGACTAGTCTGAGATGGC+AGG | 0.593866 | 3.1:-79737808 | None:intergenic |
| GCCATTATTATTGTGGACTG+GGG | 0.594152 | 3.1:+79737677 | MS.gene48408:CDS |
| TCATCACCTCTAATAATGGT+TGG | 0.596112 | 3.1:-79739596 | None:intergenic |
| CTCAATCCCATAAACAGCAA+AGG | 0.602491 | 3.1:-79737446 | None:intergenic |
| GCTCACTCTTGCCGGTCGAG+AGG | 0.602784 | 3.1:+79739036 | MS.gene48408:CDS |
| AATGAATCCATCTCCTAACT+CGG | 0.604421 | 3.1:+79742168 | MS.gene48408:CDS |
| CACTCCCTCCACCACCCGGT+AGG | 0.604652 | 3.1:-79735763 | None:intergenic |
| TAGGTTTCTCCACACAGAAG+TGG | 0.609034 | 3.1:+79738984 | MS.gene48408:CDS |
| TATTGTAGCTGATATGCGCA+AGG | 0.609834 | 3.1:+79739855 | MS.gene48408:CDS |
| CAGAAGTGGTTAACTGCTGG+TGG | 0.614907 | 3.1:+79738998 | MS.gene48408:CDS |
| ACGACCTGACTAGTCTGAGA+TGG | 0.620289 | 3.1:-79737812 | None:intergenic |
| CGCTCTGCCATCCTACCGGG+TGG | 0.624226 | 3.1:+79735752 | MS.gene48408:CDS |
| ATCCTGCTGAGACGAAGTAG+TGG | 0.624352 | 3.1:-79737469 | None:intergenic |
| AGCAAAGGCAATAATACCAA+GGG | 0.628101 | 3.1:-79737431 | None:intergenic |
| TCGTTCAACTCGTGGCAATG+AGG | 0.629437 | 3.1:+79741691 | MS.gene48408:CDS |
| CATGGGTTCTGATAGTTCAG+TGG | 0.631810 | 3.1:+79741850 | MS.gene48408:CDS |
| TACTAACCATGAGTCTAGCA+GGG | 0.636326 | 3.1:+79741994 | MS.gene48408:CDS |
| GCAACAGAAATTGCACAGAA+GGG | 0.640894 | 3.1:+79739903 | MS.gene48408:CDS |
| CAGCAAAGGCAATAATACCA+AGG | 0.642606 | 3.1:-79737432 | None:intergenic |
| AGTGAAAATGGAATCCCCAA+AGG | 0.643663 | 3.1:-79741582 | None:intergenic |
| GTGGAGTACACGCCCCAACA+AGG | 0.646133 | 3.1:+79735696 | MS.gene48408:CDS |
| GAGAAAATTGCATAGAACCT+GGG | 0.649314 | 3.1:-79735262 | None:intergenic |
| GATGCTCAAACCCAGAACAT+GGG | 0.655040 | 3.1:+79741833 | MS.gene48408:CDS |
| TATTAGAGGTGATGATCGTG+AGG | 0.660808 | 3.1:+79739604 | MS.gene48408:CDS |
| TCACCATTAACTTTATACGG+TGG | 0.661817 | 3.1:-79741647 | None:intergenic |
| AGAAACTACACTATGTGCAG+GGG | 0.663314 | 3.1:-79741954 | None:intergenic |
| AGTACTTTACCTTAACACAA+AGG | 0.665075 | 3.1:-79740684 | None:intergenic |
| GGATTCAAACAAAGATTGAG+GGG | 0.668904 | 3.1:+79739346 | MS.gene48408:CDS |
| GTATAATGATCCATACAACT+CGG | 0.679127 | 3.1:+79739304 | MS.gene48408:CDS |
| AGCAGTTAACCACTTCTGTG+TGG | 0.686421 | 3.1:-79738993 | None:intergenic |
| TGCCAAGGTTGATGAACCTG+TGG | 0.690105 | 3.1:+79741721 | MS.gene48408:CDS |
| TCATTTGACAGAATCCGGCG+CGG | 0.715427 | 3.1:+79735429 | MS.gene48408:intron |
| ACATGATGCTGAAAACTACG+GGG | 0.789598 | 3.1:-79735317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79735254 | 79742300 | 79735254 | ID=MS.gene48408 |
| chr3.1 | mRNA | 79735254 | 79742300 | 79735254 | ID=MS.gene48408.t1;Parent=MS.gene48408 |
| chr3.1 | exon | 79735254 | 79735337 | 79735254 | ID=MS.gene48408.t1.exon1;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79735254 | 79735337 | 79735254 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79735440 | 79735499 | 79735440 | ID=MS.gene48408.t1.exon2;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79735440 | 79735499 | 79735440 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79735665 | 79735825 | 79735665 | ID=MS.gene48408.t1.exon3;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79735665 | 79735825 | 79735665 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79737381 | 79737504 | 79737381 | ID=MS.gene48408.t1.exon4;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79737381 | 79737504 | 79737381 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79737618 | 79737715 | 79737618 | ID=MS.gene48408.t1.exon5;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79737618 | 79737715 | 79737618 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79737790 | 79737903 | 79737790 | ID=MS.gene48408.t1.exon6;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79737790 | 79737903 | 79737790 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79738483 | 79738543 | 79738483 | ID=MS.gene48408.t1.exon7;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79738483 | 79738543 | 79738483 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79738908 | 79739057 | 79738908 | ID=MS.gene48408.t1.exon8;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79738908 | 79739057 | 79738908 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79739282 | 79739392 | 79739282 | ID=MS.gene48408.t1.exon9;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79739282 | 79739392 | 79739282 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79739578 | 79739745 | 79739578 | ID=MS.gene48408.t1.exon10;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79739578 | 79739745 | 79739578 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79739853 | 79739966 | 79739853 | ID=MS.gene48408.t1.exon11;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79739853 | 79739966 | 79739853 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79740640 | 79740696 | 79740640 | ID=MS.gene48408.t1.exon12;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79740640 | 79740696 | 79740640 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| chr3.1 | exon | 79741470 | 79742300 | 79741470 | ID=MS.gene48408.t1.exon13;Parent=MS.gene48408.t1 |
| chr3.1 | CDS | 79741470 | 79742300 | 79741470 | ID=cds.MS.gene48408.t1;Parent=MS.gene48408.t1 |
| Gene Sequence |
| Protein sequence |
