AlfalfaGEDB | MS.gene48539

M. sativa cultivar XinJiangDaYe / MS.gene48539

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48539.t1	RHN44464.1	80.8	625	114	2	1	620	205	828	1.50E-295	1025

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48539.t1	Q9SCZ4	48.1	626	283	16	31	623	219	835	2.3e-148	527.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48539.t1	A0A396GYC7	80.8	625	114	2	1	620	205	828	1.1e-295	1025.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene48539	0.804885	1.74E-49	-1.69E-46
MS.gene054788	MS.gene48539	0.820937	5.27E-53	-1.69E-46
MS.gene058378	MS.gene48539	0.818548	1.85E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene48539.t1	MTR_7g015510	80.640	625	115	2	1	620	205	828	1047
MS.gene48539.t1	MTR_7g015550	80.480	625	116	2	1	620	205	828	1045
MS.gene48539.t1	MTR_7g015420	76.651	621	125	6	1	610	198	809	971
MS.gene48539.t1	MTR_7g015390	75.719	626	144	4	1	620	205	828	949
MS.gene48539.t1	MTR_7g015670	75.517	629	144	5	1	620	204	831	945
MS.gene48539.t1	MTR_7g015230	68.960	625	181	5	1	617	208	827	866
MS.gene48539.t1	MTR_7g015240	68.650	622	184	4	1	618	201	815	850
MS.gene48539.t1	MTR_7g015250	67.398	638	170	10	1	621	197	813	838
MS.gene48539.t1	MTR_4g052290	66.455	629	194	6	1	619	201	822	836
MS.gene48539.t1	MTR_7g015310	67.680	625	185	6	1	617	202	817	834

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48539.t1	AT3G51550	48.529	612	275	14	29	609	217	819	0.0	537
MS.gene48539.t1	AT5G28680	45.455	594	292	12	35	603	211	797	4.90e-162	486
MS.gene48539.t1	AT5G28680	45.455	594	292	12	35	603	211	797	4.90e-162	486
MS.gene48539.t1	AT3G04690	43.960	596	295	13	35	603	210	793	4.28e-159	478
MS.gene48539.t1	AT5G38990	45.156	609	302	12	23	603	202	806	8.15e-157	473
MS.gene48539.t1	AT5G39000	46.346	602	288	19	25	603	210	799	1.70e-156	472
MS.gene48539.t1	AT4G39110	39.936	621	311	17	25	616	227	814	2.80e-128	399
MS.gene48539.t1	AT1G30570	40.032	627	322	19	30	625	220	823	1.31e-127	396
MS.gene48539.t1	AT5G54380	41.118	608	308	17	26	603	199	786	2.25e-127	396
MS.gene48539.t1	AT2G21480	40.523	612	310	17	30	616	231	813	5.54e-127	395

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Find 118 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTACAATGAAGGTG+TGG	0.636245	7.2:-82255093	MS.gene48539:CDS
AAATAGCGGCACAAATGGGA+TGG	0.622880	7.2:+82255806	None:intergenic
AAATCACTTGATACAGCAGC+TGG	0.487935	7.2:+82256505	None:intergenic
AACGACTCATGTCAGCACTA+TGG	0.471331	7.2:-82255285	MS.gene48539:CDS
AAGCTTTGTCATTAAGAATT+TGG	0.167026	7.2:+82256641	None:intergenic
AAGTCTGACGTGTATTCTTT+CGG	0.364540	7.2:-82255203	MS.gene48539:CDS
AATCACTTGATACAGCAGCT+GGG	0.698897	7.2:+82256506	None:intergenic
AATTCTTAATGACAAAGCTT+TGG	0.366389	7.2:-82256638	MS.gene48539:CDS
ACAGCATAATCCTTATGAAC+AGG	0.469184	7.2:+82256196	None:intergenic
ACCACCTTTGGATCATTCAT+TGG	0.387020	7.2:-82255150	MS.gene48539:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTTACAATGAAGGTG+TGG	-	chr7.2:82256485-82256504	MS.gene48539:CDS	30.0%
AACAAAAAAAATCCTTGTCG+TGG	-	chr7.2:82255615-82255634	MS.gene48539:CDS	30.0%
ATGTACTCTCCATTTGAAAA+AGG	-	chr7.2:82255409-82255428	MS.gene48539:CDS	30.0%
CATGTTGCATGAAATCATAA+AGG	+	chr7.2:82256047-82256066	None:intergenic	30.0%
CTAACTTGATACGATAATCT+TGG	+	chr7.2:82254895-82254914	None:intergenic	30.0%
CTTTATGATTTCATGCAACA+TGG	-	chr7.2:82256045-82256064	MS.gene48539:CDS	30.0%
GATTATCGTATCAAGTTAGA+TGG	-	chr7.2:82254896-82254915	MS.gene48539:CDS	30.0%
GGATAAGAAAAAAGTGAACA+TGG	-	chr7.2:82256449-82256468	MS.gene48539:CDS	30.0%
TTATCCAATGAATGATCCAA+AGG	+	chr7.2:82256435-82256454	None:intergenic	30.0%
AAGTCTGACGTGTATTCTTT+CGG	-	chr7.2:82256375-82256394	MS.gene48539:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	82254857	82256743	82254857	ID=MS.gene48539
chr7.2	mRNA	82254857	82256743	82254857	ID=MS.gene48539.t1;Parent=MS.gene48539
chr7.2	exon	82254857	82256743	82254857	ID=MS.gene48539.t1.exon1;Parent=MS.gene48539.t1
chr7.2	CDS	82254857	82256743	82254857	ID=cds.MS.gene48539.t1;Parent=MS.gene48539.t1

Gene Sequence

>MS.gene48539

ATGCCTTCTTTTCTCTATTACACAAACCTCAGTGACCAAGATTATCGTATCAAGTTAGATGGCTCTGAAGATATACCATACCAAATTCTTAATGACAAAGCTTTGGAAATGGTTTATAGAGTCAACGTTGGTGAAAATCAAGTTCCAGCAAACCAAGATACGGGCATGTTTCGTAGTTGGGACAATGATTCTCCTCGTTACTTGGAGAAAGAGTACCCAGCTGCTGTATCAAGTGATTTTGGAGAGCATCTCAACTATTCAAGCAATACCATTCCAAATTACACTGCACCAGAAGCTGTATACTTGACTGCTAGAAGTTATGGATTCCATGCGACAGAGGATTACAATGTAACTTGGAATTTTGAAGTTGATTGTAGTTTTACTTATATGGTAAGGTTACATTTTTGTGAGTTTACCCAGGGTGTCAACAACATAGGCGATAGAATGTTTCAGATTTTTATAGATGATATTTTAGTTGAAGAGGGGGCTGATGTGATAGGGTGGAGTGGTGGTCGTCGTATGGTTCCTGTTCATAAGGATTATGCTGTGGCTATGTACTCTCCATTTGAAAAAGGAAATCTTTCGATCAAGCTACAACGATTACCAAAATCCATAACTACGGTATATCGTGATGTCTTGTTGAATGGAATTGAGATTTTGAAAATAAGTGATAAAAATAATCTCTTTGGAGTGAATCCAAAACCCATGTCTGTATCTCCCAAGGAACAAGTTTTACCAACTCAACAATGGAAGAAATCAACAAAAAAAATCCTTGTCGTGGTTACTGTTTCATGTCTCATTCTAGCATCTGTTGTTGGAATAATAGTTTTTGTTAGACGGAATATAATATTCAATTCTCATACTGAAATGGAAGAAAGTTCATGGAAGACAAAGAAAGAAGGTTCCTCAACTTTACCATCCCATTTGTGCCGCTATTTTACAATAGCGGAGATAAGAGCAGCTACAAACAACTTCGAAGAAATTTTTATCATTGGAGTTGGAGGGTTCGGCACTGTATACAAAGGTTATATCGATGAAATCACACCTGTTGCAATAAAACGCCGTAAACCAGGTTCTCAACAAGGTCTAAATGAATTCATGAATGAAATCGAGATGCTCTCTCAGCTTCGTCATATTCACTTGGTTTCTCTCATTGGATATTGCAATGAAGATGCAGAGATGATTCTCCTTTATGATTTCATGCAACATGGCACTCTCCGTGAACATCTCTATGGTTCGGATAATGATCCTCTTGAGTGGAATCAAAGACTCGAGATTCTATTAGGTGCAGCAAAAGGGTTGCATTATCTTCATGAAGGTGCGAAGCACAATATCATACACCGTGACGTTAAGAGTACAAACATATTGTTGGATGAAAAATGGGTGGCTAAGGTTTCTGATTTCGGGTTATCAAAAGTGGGACCAACCGGGATATCAACGACTCATGTCAGCACTATGGTGAAGGGTAGTATAGGATATTTGGATCCAGAATGTTACCTGCGAAACAGGTTGACTTTAAAGTCTGACGTGTATTCTTTCGGTGTTGTGCTTCTTGAGGTGTTGTGTGCGAGACCACCTTTGGATCATTCATTGGATAAGAAAAAAGTGAACATGGTTGCTTTGTTCAAAAAATGTTACAATGAAGGTGTGGTAATTGAAGAGATGGTAGACCCTTTCATAAAGGATTCTATAACAAGTGAGTGTTTGAAATGTTATTGTCAAATGGTGTTGAGTTGTTTGCATGGTGATGGAAATCAACGAATGTCTATGAGTGATGTGGTTGGGACTTTAGAGCTTACGTTGAAATTGGTTATGAGTGGGGAGGATGGTAAGTTTGATGCGACCCAAGAAAAAGAGGAAATAAAGCATACGTTTTATAAGGAGTAA

Protein sequence

>MS.gene48539.t1

MPSFLYYTNLSDQDYRIKLDGSEDIPYQILNDKALEMVYRVNVGENQVPANQDTGMFRSWDNDSPRYLEKEYPAAVSSDFGEHLNYSSNTIPNYTAPEAVYLTARSYGFHATEDYNVTWNFEVDCSFTYMVRLHFCEFTQGVNNIGDRMFQIFIDDILVEEGADVIGWSGGRRMVPVHKDYAVAMYSPFEKGNLSIKLQRLPKSITTVYRDVLLNGIEILKISDKNNLFGVNPKPMSVSPKEQVLPTQQWKKSTKKILVVVTVSCLILASVVGIIVFVRRNIIFNSHTEMEESSWKTKKEGSSTLPSHLCRYFTIAEIRAATNNFEEIFIIGVGGFGTVYKGYIDEITPVAIKRRKPGSQQGLNEFMNEIEMLSQLRHIHLVSLIGYCNEDAEMILLYDFMQHGTLREHLYGSDNDPLEWNQRLEILLGAAKGLHYLHEGAKHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGISTTHVSTMVKGSIGYLDPECYLRNRLTLKSDVYSFGVVLLEVLCARPPLDHSLDKKKVNMVALFKKCYNEGVVIEEMVDPFIKDSITSECLKCYCQMVLSCLHGDGNQRMSMSDVVGTLELTLKLVMSGEDGKFDATQEKEEIKHTFYKE