AlfalfaGEDB | MS.gene48739

M. sativa cultivar XinJiangDaYe / MS.gene48739

KEGG: K14509
GO: GO:0000155 GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005789 GO:0006793 GO:0006796 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0031090 GO:0035556 GO:0038023 GO:0038199 GO:0042221 GO:0042562 GO:0044237 GO:0050789 GO:0050794 GO:0050896 GO:0051740 GO:0060089 GO:0065007 GO:0072328 GO:0110165 GO:0140096 GO:0140299
PFAM: PF00072.27 PF00512.28 PF01590.29 PF02518.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48739.t1	AES87618.2	98.1	741	14	0	1	741	50	790	0.00E+00	1410.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48739.t1	O81122	84.2	741	116	1	2	741	1	741	0.0e+00	1219.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48739.t1	G7JKV2	98.1	741	14	0	1	741	50	790	0.0e+00	1410.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene48739.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene027808	MS.gene48739	PPI
MS.gene044915	MS.gene48739	PPI
MS.gene062402	MS.gene48739	PPI
MS.gene48739	MS.gene068602	PPI
MS.gene48739	MS.gene068604	PPI
MS.gene48739	MS.gene053206	PPI
MS.gene48739	MS.gene027810	PPI
MS.gene48739	MS.gene070887	PPI
MS.gene48739	MS.gene97518	PPI
MS.gene48739	MS.gene069138	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48739.t1	MTR_4g031150	98.111	741	14	0	1	741	50	790	0.0	1501
MS.gene48739.t1	MTR_7g109150	74.080	625	158	2	1	623	1	623	0.0	908
MS.gene48739.t1	MTR_1g073840	41.711	748	403	18	5	739	29	756	6.97e-175	520
MS.gene48739.t1	MTR_7g116330	39.386	749	413	16	5	734	34	760	3.20e-163	490
MS.gene48739.t1	MTR_1g079790	37.683	751	430	18	3	734	26	757	1.14e-154	468
MS.gene48739.t1	MTR_1g044210	37.281	743	444	13	5	735	28	760	8.68e-151	458
MS.gene48739.t1	MTR_1g079790	38.704	571	328	11	3	561	26	586	1.75e-119	372
MS.gene48739.t1	MTR_3g085130	28.729	362	211	7	335	655	438	793	3.02e-34	141
MS.gene48739.t1	MTR_3g085130	28.729	362	211	7	335	655	228	583	6.32e-34	139
MS.gene48739.t1	MTR_8g080770	29.155	367	215	8	335	663	383	742	6.58e-34	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48739.t1	AT1G66340	79.730	740	144	3	2	739	1	736	0.0	1204
MS.gene48739.t1	AT2G40940	70.608	592	174	0	2	593	1	592	0.0	848
MS.gene48739.t1	AT3G23150	38.421	760	411	18	5	732	32	766	3.18e-150	457
MS.gene48739.t1	AT3G04580	38.255	745	437	16	4	733	26	762	3.16e-148	451
MS.gene48739.t1	AT3G04580	38.255	745	437	16	4	733	26	762	3.16e-148	451
MS.gene48739.t1	AT3G23150	40.806	571	313	12	5	562	32	590	1.25e-125	387
MS.gene48739.t1	AT1G04310	38.966	503	282	9	5	492	34	526	6.47e-97	314
MS.gene48739.t1	AT1G04310	38.966	503	282	9	5	492	34	526	6.47e-97	314
MS.gene48739.t1	AT5G10720	33.798	287	164	8	323	590	339	618	3.95e-37	150
MS.gene48739.t1	AT1G27320	26.782	463	286	10	306	728	412	861	7.79e-35	143

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Find 154 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGACTCTTGTTGAACT+CGG	0.650784	4.4:-72707696	MS.gene48739:CDS
AAAGAGAACTGTTTGAGAGC+TGG	0.562595	4.4:-72704790	MS.gene48739:CDS
AAATAAAAGTGGCCATCACT+TGG	0.516449	4.4:+72706449	None:intergenic
AAATCATCTGCTGGCCATTG+TGG	0.550408	4.4:+72708161	None:intergenic
AAATTAGAAAGATTTAGGAG+AGG	0.591308	4.4:+72707429	None:intergenic
AACTAGAAGCTATGCTTTGA+TGG	0.293229	4.4:-72707379	MS.gene48739:CDS
AAGGCCAAGCCCACTTCCAA+TGG	0.515472	4.4:+72706223	None:intergenic
AAGGGACTTCTTATCCATTT+AGG	0.238284	4.4:-72705006	MS.gene48739:CDS
AAGTGGCCATCACTTGGTAC+TGG	0.531856	4.4:+72706455	None:intergenic
AATAATATGTACAAGCATAA+GGG	0.501867	4.4:+72707881	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAAATGACATCAAAC+CGG	+	chr4.4:72707441-72707460	None:intergenic	30.0%
AAGGACTATGAAAAGAAAAC+CGG	+	chr4.4:72707479-72707498	None:intergenic	30.0%
AAGTAAGTCTATGTACATCA+AGG	-	chr4.4:72707234-72707253	MS.gene48739:intron	30.0%
AAGTCAGATGAATTGTTTAG+TGG	-	chr4.4:72707764-72707783	MS.gene48739:CDS	30.0%
AATCAGGAAATCTAATATCC+CGG	+	chr4.4:72706401-72706420	None:intergenic	30.0%
AGGTCCATGTAAAAGAATAT+CGG	+	chr4.4:72705681-72705700	None:intergenic	30.0%
AGTTCTTGTATGAATTGTGA+AGG	+	chr4.4:72704922-72704941	None:intergenic	30.0%
CAAATTCTTCTCAATGTTGT+TGG	-	chr4.4:72706306-72706325	MS.gene48739:CDS	30.0%
CAACAGGTTTAATCAAGTTA+AGG	+	chr4.4:72706203-72706222	None:intergenic	30.0%
CTTACTATGAAAAGACTTAG+TGG	-	chr4.4:72707543-72707562	MS.gene48739:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	72704693	72708210	72704693	ID=MS.gene48739
chr4.4	mRNA	72704693	72708210	72704693	ID=MS.gene48739.t1;Parent=MS.gene48739
chr4.4	exon	72707302	72708210	72707302	ID=MS.gene48739.t1.exon1;Parent=MS.gene48739.t1
chr4.4	CDS	72707302	72708210	72707302	ID=cds.MS.gene48739.t1;Parent=MS.gene48739.t1
chr4.4	exon	72706821	72707189	72706821	ID=MS.gene48739.t1.exon2;Parent=MS.gene48739.t1
chr4.4	CDS	72706821	72707189	72706821	ID=cds.MS.gene48739.t1;Parent=MS.gene48739.t1
chr4.4	exon	72706439	72706705	72706439	ID=MS.gene48739.t1.exon3;Parent=MS.gene48739.t1
chr4.4	CDS	72706439	72706705	72706439	ID=cds.MS.gene48739.t1;Parent=MS.gene48739.t1
chr4.4	exon	72706209	72706336	72706209	ID=MS.gene48739.t1.exon4;Parent=MS.gene48739.t1
chr4.4	CDS	72706209	72706336	72706209	ID=cds.MS.gene48739.t1;Parent=MS.gene48739.t1
chr4.4	exon	72705855	72706052	72705855	ID=MS.gene48739.t1.exon5;Parent=MS.gene48739.t1
chr4.4	CDS	72705855	72706052	72705855	ID=cds.MS.gene48739.t1;Parent=MS.gene48739.t1
chr4.4	exon	72704693	72705047	72704693	ID=MS.gene48739.t1.exon6;Parent=MS.gene48739.t1
chr4.4	CDS	72704693	72705047	72704693	ID=cds.MS.gene48739.t1;Parent=MS.gene48739.t1

Gene Sequence

>MS.gene48739

ATGATGGAATCCTGCAATTGTATTGAGCCACAATGGCCAGCAGATGATTTATTGATGAAATACCAATACATATCAGATTTCTTCATCGCCCTTGCTTATTTCTCGATCCCGCTCGAGCTTATCTACTTTGTTAAGAAATCTGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCCTTCATAGTTCTATGTGGAGCAACACATCTAATAAATTTATGGACCTTCACAATTCATACAAGAACTGTGGCAATTGTAATGACCATCGCCAAGGTTTTAACTGCAGTGGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCCGATCTATTAAGTGTTAAAACTAGAGAATTATTTTTGAAGAACAAGGCTGCGGAGCTTGATAGAGAAATGGGTTTGATTCGTACGCAGGAAGAAACTGGTCGACATGTTAGAATGTTGACTCATGAGATTAGAAGCACTCTTGATAGACATACAATACTGAAAACGACTCTTGTTGAACTCGGTAGAACTCTTGGGTTAGAGGAATGTGCGTTATGGATGCCGACACGTACTGGGTTGGAGCTTCAACTTTCTTACACATTGAGACAGCAGAACCCTGTTGGATATACAGTTCCTATTAACCTTCCTGTGATCAACCATGTATTTAGTAGCAACCGTGCAGTTAAAATTTCATCGAATTGCCCAGTTGCTAGATTACGACCTCATGCTGCAAAATACATGCCTGGGGCAGTAGTTGCCATTCGGGTTCCTCTCCTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTGGTCGAGGTAGTTGCTGATCAGGTTAGTAATTCGCCATTTTATTCAGTTTCCTTTGTAGCGTATTTCTTTACATGTTGTATGCTTCACTTTTATTTGACCGATATTCTTTTACATGGACCTGTTTTTACACCAGGTAGCTGTTGCTCTTTCTCATGCTGCAATCTTAGAAGAGTCGATGAGGGCAAGGGATCAACTTATGGAGCAGAATGTTGCACTTGATATGGCAAGAAGAGAAGCAGAAACTGCAATTCATGCTCGCAATGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGATGCAGGAAACAGATTTGACTGCTGAGCAACGTCTAATGGTGGAAACAATACTAAAAAGCAGTAATTTATTAGCTACCCTCGTCAACGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAATATCAACATTTAACCTTCATTCATTGTTTAGAGAGGTAAAGTTTTCGCCTACATCCCAAAAAGTACAGCTATATTAGTCCGACTAATAGCTTATGATCTTTGAGTTTCTTCAAAAGGTTGATGTTGTTAGATTTGTTATTCTGATTGCAGGTCCTTAACTTGATTAAACCTGTTGCATCTGTTAAAAAGCTGTCACTCACTTTACATTTCGCATCAGATTTGCCGGTGCATGCGATTGGTGATGAAAAGCGTCTCATGCAAATTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCACAAAAGAAGGCAGCATTTCCATCGCCGTGGTTGTTGTAAAGCCCGAATCCTTCCGGGATATTAGATTTCCTGATTTCCTACCAGTACCAAGTGATGGCCACTTTTATTTGCGAGTACAGGTTTGTTTCGTCAAGCTTGACTAATTTTCTTCTGTTTTGGTATATTGTATCGTCTGTTATCTGATTTCGAAGGTGGAATATATTTTGTTTTCCACATTATAGGTAAAAGATTCAGGATCAGGAATCAATCCACAAGACATCCCAAAATTATTCACTAAGTTTGCACAAAACCAAACATTAGCAACAAAAAATCCCATTGGAAGTGGGCTTGGCCTTGCAATTTGTAAAAGGTATTATATTCTTGTATAGTTACTGATGTGAAACATGTTAATTTGTTTTCTATTCCTTGGGCTATAGTATATTTAAAAAATTAGAATTTGCTCTCTTCAATATTGGTATTTATGATTTTCTATTGATTGCGTACGGTATCTTTAATTTGTGAGCAGGTTTGTGAATCTCATGGAAGGACATATTTGGATTGAAAGCGAAGGTATTGGTAAAGGATGTACAGCCACTTTCATTGTAAAACTCGGAATCCCGGACCGTCCAAATGAACATAAACTACCTTACAAACCTAAAGCTCTAGTAAATCATGGATCTACAAACATTCCCGGCCTAAAGGTTCTTGTCATGGATGATAATGGGTCAGTAACAGCTTTATTTCCGTACCTTCAGTTGTGAAATCTGTTACTATGTCTGGTGATTTTATAGAAAAGTAAACTTAGGTTGATTTCTTACTTTAAGACCCTACTTCTTGGGCCCCAATTATATTCTTGAAAGCATAATAATACTTCTGTGCTGAATGCTCATATTGCTTACTACTAGTCCAAAGTAAGTCTATGTACATCAAGGTTTAGCTGGTAAACTTTTTAATTTACACTCCCTAAAAGCAATATTTTAAAAACCGAATTGGAGAGACATCTTGGTCATGGTTCACTGCATTAAACCACTCAAACCGGGACAAAACCGTGTTCTAACCATTCAAATAACTGAACGTATAGAATGCTGTTCACAGTTTAACAGGCTGAACTGTCCGGTTTGATGTCATTTGGTTTTTACAGGCTGAACTGTCCGGTTTTCTTTTCATAGTCCTTGATGGGACATTATGGTTTTAGTTTGATCGATGTATTTGACCCCACTTACTATGAAAAGACTTAGTGGTGGTTGTTGGTGTAACAAGCTTTAATAGCATATCAAGGAATATTTCTAGCATAAATAAATTTAAACTAATAGGTGAAAGGTACCTGAATTTTTATTTGACAATTTGTATGTTCATTGACACTCACTTTATAGCCAGAAAAGAAAATATACATAATGCATGCAGTCTTCATTCAGTCTTCTACTTGCAATCTAACTTGGAAGTCAGATGAATTGTTTAGTGGCTGATGCATTTGCTACGTTTACTCTTTCCCTTGCTTGTCTCATAACTGATGGTGAAACTTGTAATGCAGGGTGAGCAGGTCAGCGACAAAGGGACTTCTTATCCATTTAGGATGCGATGTCACAACTGTTGGCTCAAGCGAAAAATGCCTGCGTGTTGTTTCTCTGGAACACAAAGTGGTCTTTATGGATGTTTGTACAGGGTTAGATGGTTATGAATTAGCGGTTCGTATACAAGAGAAGTTCACAAAACGTCAAGATAGACCACTTATAGTTGCTCTTACCGGAAACACAAACAAGTTGACCAAAGAGAACTGTTTGAGAGCTGGTGTGAATGGTGTAGTTTTAAAACCTGTTTCTGTTGAGAAGATGAAAGGTGTTTTAACAGAACTCTTGGAGCGTCGGTTTGTGTTTGAAACAATTTAA

Protein sequence

>MS.gene48739.t1

MMESCNCIEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTIAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINHVFSSNRAVKISSNCPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLMQETDLTAEQRLMVETILKSSNLLATLVNDVLDLSRLEDGSFQLEISTFNLHSLFREVLNLIKPVASVKKLSLTLHFASDLPVHAIGDEKRLMQILLNVVGNAVKFTKEGSISIAVVVVKPESFRDIRFPDFLPVPSDGHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQTLATKNPIGSGLGLAICKRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPDRPNEHKLPYKPKALVNHGSTNIPGLKVLVMDDNGVSRSATKGLLIHLGCDVTTVGSSEKCLRVVSLEHKVVFMDVCTGLDGYELAVRIQEKFTKRQDRPLIVALTGNTNKLTKENCLRAGVNGVVLKPVSVEKMKGVLTELLERRFVFETI