Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48744.t1 | XP_003605398.2 | 96.2 | 928 | 35 | 0 | 1 | 928 | 1 | 928 | 0.00E+00 | 1659.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48744.t1 | Q8CFE4 | 32.5 | 618 | 385 | 14 | 14 | 618 | 7 | 605 | 3.2e-82 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48744.t1 | G7JKS9 | 96.2 | 928 | 35 | 0 | 1 | 928 | 1 | 928 | 0.0e+00 | 1659.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050330 | MS.gene48744 | 0.813114 | 3.01E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene48744 | 0.814592 | 1.42E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene48744 | -0.814036 | 1.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48744 | MS.gene33357 | PPI |
| MS.gene89100 | MS.gene48744 | PPI |
| MS.gene48744 | MS.gene033983 | PPI |
| MS.gene48744 | MS.gene36285 | PPI |
| MS.gene48744 | MS.gene79543 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48744.t1 | MTR_4g030910 | 97.629 | 928 | 22 | 0 | 1 | 928 | 1 | 928 | 0.0 | 1870 |
| MS.gene48744.t1 | MTR_6g086565 | 22.593 | 509 | 334 | 11 | 96 | 585 | 58 | 525 | 1.66e-23 | 107 |
| MS.gene48744.t1 | MTR_6g086565 | 22.491 | 578 | 372 | 15 | 27 | 585 | 5 | 525 | 6.40e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48744.t1 | AT1G22870 | 65.892 | 947 | 269 | 11 | 1 | 927 | 1 | 913 | 0.0 | 1226 |
| MS.gene48744.t1 | AT1G71410 | 64.957 | 936 | 292 | 12 | 1 | 927 | 1 | 909 | 0.0 | 1194 |
| MS.gene48744.t1 | AT1G71410 | 64.957 | 936 | 292 | 12 | 1 | 927 | 1 | 909 | 0.0 | 1194 |
| MS.gene48744.t1 | AT1G22870 | 68.459 | 837 | 226 | 6 | 1 | 827 | 1 | 809 | 0.0 | 1179 |
| MS.gene48744.t1 | AT1G22870 | 62.916 | 782 | 236 | 11 | 166 | 927 | 1 | 748 | 0.0 | 946 |
| MS.gene48744.t1 | AT1G22870 | 61.699 | 718 | 221 | 11 | 230 | 927 | 9 | 692 | 0.0 | 835 |
| MS.gene48744.t1 | AT2G40730 | 22.042 | 617 | 397 | 16 | 40 | 630 | 18 | 576 | 3.31e-20 | 97.1 |
Find 245 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGACTCCACAGAATTT+TGG | 0.144459 | 4.4:-72816144 | None:intergenic |
| CTTGACAAAGAGCATATATT+TGG | 0.211975 | 4.4:-72815375 | None:intergenic |
| CAAAATAATTTGCCCTTATC+TGG | 0.217176 | 4.4:+72815800 | MS.gene48744:CDS |
| AATTCCAACAATGGTATTTC+AGG | 0.220096 | 4.4:+72816031 | MS.gene48744:CDS |
| TCTCTTCAAATGAATCTTTC+AGG | 0.221457 | 4.4:+72808903 | MS.gene48744:CDS |
| CGTTTGGGTGTTGGATAAAA+AGG | 0.235354 | 4.4:+72803809 | MS.gene48744:CDS |
| CTTCTCTTGGGATGCAGATT+GGG | 0.235573 | 4.4:+72815679 | MS.gene48744:CDS |
| CACCGAGCAGCCACCCCTTT+TGG | 0.238705 | 4.4:+72816456 | MS.gene48744:CDS |
| TCTGGTCTTACCTCACAATT+TGG | 0.249950 | 4.4:+72815890 | MS.gene48744:CDS |
| GTTACGTGCTCTGCGTTTCC+TGG | 0.252212 | 4.4:+72810744 | MS.gene48744:CDS |
| TAGATGTATTAATAGAATTC+TGG | 0.257450 | 4.4:-72815733 | None:intergenic |
| GCCTGGAAACTTGGTGGATT+TGG | 0.258496 | 4.4:+72805568 | MS.gene48744:CDS |
| GGAGTTGCTGTGACTGATTC+TGG | 0.265135 | 4.4:+72815563 | MS.gene48744:CDS |
| CACCTGGGTATCAAGTTCTT+TGG | 0.281777 | 4.4:-72812821 | None:intergenic |
| TGGCCGCCTCGTGCATCTTC+TGG | 0.283391 | 4.4:+72815872 | MS.gene48744:CDS |
| GAAGAACATGTGAAATTAAA+TGG | 0.302392 | 4.4:-72812723 | None:intergenic |
| TTGGCGGGGCCCGTTGCTTT+AGG | 0.304433 | 4.4:-72815704 | None:intergenic |
| AGTATCCGGTTGTTTGCGTT+TGG | 0.312856 | 4.4:+72803793 | MS.gene48744:CDS |
| TTTGAACCTCAGAGTTCTCT+TGG | 0.315441 | 4.4:+72816217 | MS.gene48744:CDS |
| AGAGGGCGGGGAAGAGGCAG+AGG | 0.321338 | 4.4:+72816394 | MS.gene48744:CDS |
| AAGTGTTCCTAAGGATCTTA+AGG | 0.324960 | 4.4:+72804052 | MS.gene48744:CDS |
| CTCAGGAGCAGTGTAATTAA+TGG | 0.336076 | 4.4:-72808050 | None:intergenic |
| ATCTACTGAAGGACATGAAT+TGG | 0.341032 | 4.4:-72815843 | None:intergenic |
| GCTTCTCTTGGGATGCAGAT+TGG | 0.355593 | 4.4:+72815678 | MS.gene48744:CDS |
| CCTCTACCCACTGTGGTTGA+AGG | 0.358197 | 4.4:-72816376 | None:intergenic |
| CCGAGACGGATCGCGTGATT+TGG | 0.361097 | 4.4:-72803763 | None:intergenic |
| TCCTGCAGTTAACGGCCTTC+AGG | 0.362743 | 4.4:+72815607 | MS.gene48744:CDS |
| GAGAGCATCCTTTGCAAGTC+AGG | 0.364314 | 4.4:-72808884 | None:intergenic |
| GAATAGTTTGCAAGATTTCC+AGG | 0.366270 | 4.4:-72815080 | None:intergenic |
| CAACCCTTATGTGTACCCTT+GGG | 0.366688 | 4.4:+72815133 | MS.gene48744:CDS |
| GTGGGTAGAGGGCGGGGAAG+AGG | 0.367494 | 4.4:+72816388 | MS.gene48744:CDS |
| CTTGGCAGACCAATTGTTGC+TGG | 0.367793 | 4.4:-72816119 | None:intergenic |
| TTTGCAGGAAATGGGATTGT+TGG | 0.371651 | 4.4:+72805181 | MS.gene48744:intron |
| TTCATTAATTTGCAGGAAAT+GGG | 0.374196 | 4.4:+72805173 | MS.gene48744:intron |
| AAGGCTTGCGAGCAATTAAA+TGG | 0.376579 | 4.4:-72808141 | None:intergenic |
| CTCATCTATCCCATCGGATC+TGG | 0.376874 | 4.4:+72808859 | MS.gene48744:CDS |
| AATGTTAAATCAACTGATCT+TGG | 0.377809 | 4.4:+72816298 | MS.gene48744:CDS |
| ACCAAATCCACCAAGTTTCC+AGG | 0.381691 | 4.4:-72805569 | None:intergenic |
| AGGAGCACCACTTCTTCAGC+TGG | 0.387774 | 4.4:+72808079 | MS.gene48744:CDS |
| CGCCCTAGTGGTTCATTATC+CGG | 0.389618 | 4.4:+72815998 | MS.gene48744:CDS |
| TGTGCATGTTGTTCAAGGTT+TGG | 0.391667 | 4.4:+72803944 | MS.gene48744:CDS |
| GTATCCGGTTGTTTGCGTTT+GGG | 0.392102 | 4.4:+72803794 | MS.gene48744:CDS |
| CTGATTAGATACACCAGATA+AGG | 0.392866 | 4.4:-72815813 | None:intergenic |
| CAGACCAATTGTTGCTGGCC+TGG | 0.396129 | 4.4:-72816114 | None:intergenic |
| TTCTTGAACGGTTGTTGAAA+CGG | 0.402267 | 4.4:-72803652 | None:intergenic |
| AATAGAATTCTGGACAGAAT+TGG | 0.402583 | 4.4:-72815723 | None:intergenic |
| ACATCTAATAAATCTGTGAT+AGG | 0.404562 | 4.4:+72815749 | MS.gene48744:CDS |
| GGTTCATTATCCGGTGCATC+TGG | 0.404706 | 4.4:+72816007 | MS.gene48744:CDS |
| GTCTCCAGGCCAGCAACAAT+TGG | 0.407124 | 4.4:+72816110 | MS.gene48744:CDS |
| ACAAGCAATTCAAGCAATCT+TGG | 0.407775 | 4.4:+72816088 | MS.gene48744:CDS |
| TGCAAGTTGTTCATTCTTGT+TGG | 0.408006 | 4.4:-72816335 | None:intergenic |
| CAACCCCAAGGGTACACATA+AGG | 0.408326 | 4.4:-72815137 | None:intergenic |
| CATTCCTGAAATACCATTGT+TGG | 0.413881 | 4.4:-72816035 | None:intergenic |
| GGAATGGCATTAAACAAGAT+AGG | 0.419727 | 4.4:+72816052 | MS.gene48744:CDS |
| GCTTCGGTAGCGAATACTCT+TGG | 0.421025 | 4.4:+72804011 | MS.gene48744:CDS |
| ATAGATGAGCTAGCATTCCT+TGG | 0.421853 | 4.4:-72816175 | None:intergenic |
| TTTAACCATTGCAGAGTCTC+AGG | 0.422067 | 4.4:+72811844 | MS.gene48744:CDS |
| CCGCCGGTCCCGCTTTAGCC+TGG | 0.424630 | 4.4:+72803727 | MS.gene48744:CDS |
| TACCTTGTTTATTATTAGCT+CGG | 0.424935 | 4.4:-72812591 | None:intergenic |
| CCTGTCTTAAGCACTGCTTC+TGG | 0.425601 | 4.4:+72812539 | MS.gene48744:CDS |
| AGGATCATCATCTTCAAGAT+TGG | 0.428641 | 4.4:-72815957 | None:intergenic |
| ACGTGAATCATTATCATCAT+AGG | 0.429078 | 4.4:-72812761 | None:intergenic |
| ATGTTCCACTCACAGCATAA+TGG | 0.430542 | 4.4:-72805642 | None:intergenic |
| TCGTAGTCTTGAAGAGGCTT+TGG | 0.431079 | 4.4:-72803684 | None:intergenic |
| TGGCTGCTCGGTGCTTGACT+TGG | 0.431847 | 4.4:-72816446 | None:intergenic |
| TCATAGGCTCGAACAATCAT+TGG | 0.434291 | 4.4:-72812745 | None:intergenic |
| AACACCCAAACGCAAACAAC+CGG | 0.436701 | 4.4:-72803798 | None:intergenic |
| GAGGTTCAAAGCCATTGTTC+AGG | 0.439568 | 4.4:-72816204 | None:intergenic |
| CTCTACCCACTGTGGTTGAA+GGG | 0.439883 | 4.4:-72816375 | None:intergenic |
| GGGATTGTGCATGTTGTTCA+AGG | 0.441726 | 4.4:+72803939 | MS.gene48744:CDS |
| TGGGTTCTTGAAACAAAGTC+AGG | 0.443828 | 4.4:+72816237 | MS.gene48744:CDS |
| TTGAACCTCAGAGTTCTCTT+GGG | 0.445956 | 4.4:+72816218 | MS.gene48744:CDS |
| CCAACCCTTATGTGTACCCT+TGG | 0.446020 | 4.4:+72815132 | MS.gene48744:CDS |
| ATGGTTAGGTTGAGACATCC+TGG | 0.449776 | 4.4:+72803918 | MS.gene48744:CDS |
| CTTGGTATGAGAGTGCTGTC+TGG | 0.450433 | 4.4:-72816428 | None:intergenic |
| TAAAAGCATTGTCAGATATG+TGG | 0.451916 | 4.4:+72810905 | MS.gene48744:CDS |
| TTTGGCGGAGTAAAGTTTCC+AGG | 0.454017 | 4.4:-72803745 | None:intergenic |
| AAACTATCTCCTGCAGTTAA+CGG | 0.459043 | 4.4:+72815599 | MS.gene48744:CDS |
| TTCAAGCAATCTTGGTCTCC+AGG | 0.459052 | 4.4:+72816096 | MS.gene48744:CDS |
| TGGATGCTGGGAAGATGGTT+AGG | 0.459231 | 4.4:+72803904 | MS.gene48744:CDS |
| CATTCAGCTGTTGAGCAGTC+AGG | 0.461966 | 4.4:-72815340 | None:intergenic |
| CTTAAGACAGGGACAAGGGC+TGG | 0.463233 | 4.4:-72812527 | None:intergenic |
| CGGGACCGGCGGAACCGATC+TGG | 0.463244 | 4.4:-72803716 | None:intergenic |
| CCTGTAAAATCCATTGCACT+TGG | 0.463536 | 4.4:-72808926 | None:intergenic |
| GGTTGTTTGCGTTTGGGTGT+TGG | 0.463872 | 4.4:+72803800 | MS.gene48744:CDS |
| CTTCGGTAGCGAATACTCTT+GGG | 0.464586 | 4.4:+72804012 | MS.gene48744:CDS |
| GATTGGGGTCCTAAAGCAAC+GGG | 0.466852 | 4.4:+72815695 | MS.gene48744:CDS |
| ACAACCGTTCAAGAAGTAAC+AGG | 0.467422 | 4.4:+72803660 | MS.gene48744:CDS |
| ACCATTCCCTTAAGATCCTT+AGG | 0.469358 | 4.4:-72804059 | None:intergenic |
| TTCAAGATTGGATGTGGATG+AGG | 0.470079 | 4.4:-72815945 | None:intergenic |
| TTCTTACAAGCATGTGGTCC+AGG | 0.474406 | 4.4:-72810762 | None:intergenic |
| CACCACTTTGTGCAGAACTT+AGG | 0.475258 | 4.4:+72811786 | MS.gene48744:CDS |
| ACCACAGTGGGTAGAGGGCG+GGG | 0.480384 | 4.4:+72816382 | MS.gene48744:CDS |
| AAAAGCATCCTCAGCCGCCT+TGG | 0.481850 | 4.4:-72803865 | None:intergenic |
| ATCCAAAAGGGGTGGCTGCT+CGG | 0.486158 | 4.4:-72816458 | None:intergenic |
| TGGACCTGTTACTTCTTGAA+CGG | 0.486566 | 4.4:-72803664 | None:intergenic |
| AACCACAGTGGGTAGAGGGC+GGG | 0.487860 | 4.4:+72816381 | MS.gene48744:CDS |
| GAATAAGATGGGCATGGTTG+TGG | 0.490924 | 4.4:-72805250 | None:intergenic |
| GACTGAACCGTTGTTTGCTT+CGG | 0.492501 | 4.4:+72803995 | MS.gene48744:CDS |
| GTGGTGCTCCTCACCATCTC+AGG | 0.494154 | 4.4:-72808067 | None:intergenic |
| AGTGTTCCTAAGGATCTTAA+GGG | 0.495954 | 4.4:+72804053 | MS.gene48744:CDS |
| CCTTCAACCACAGTGGGTAG+AGG | 0.497028 | 4.4:+72816376 | MS.gene48744:CDS |
| AACCCCAAGGGTACACATAA+GGG | 0.498164 | 4.4:-72815136 | None:intergenic |
| TTCTCTTGGGATGCAGATTG+GGG | 0.498334 | 4.4:+72815680 | MS.gene48744:CDS |
| GTTACCCCAACAAATCCAAA+AGG | 0.498720 | 4.4:-72816471 | None:intergenic |
| CAACAATGGTATTTCAGGAA+TGG | 0.499806 | 4.4:+72816036 | MS.gene48744:CDS |
| GATTTGATTAGGATGGATGC+TGG | 0.499807 | 4.4:+72803891 | MS.gene48744:CDS |
| CAAAATTCTGTGGAGTCTAT+CGG | 0.499919 | 4.4:+72816145 | MS.gene48744:CDS |
| TTATCACATTGAGTGGAGCC+TGG | 0.500197 | 4.4:+72805551 | MS.gene48744:CDS |
| ACCTGAAGGCCGTTAACTGC+AGG | 0.504180 | 4.4:-72815608 | None:intergenic |
| GCTGTCGGAGGCGAGATTGA+AGG | 0.504568 | 4.4:+72803833 | MS.gene48744:CDS |
| TGATTCACGTTTACAAGAAG+AGG | 0.505008 | 4.4:+72812774 | MS.gene48744:CDS |
| TGGATTGACCAAGGCGGCTG+AGG | 0.505029 | 4.4:+72803857 | MS.gene48744:CDS |
| TGTTGAAGCAACGGTGCTAC+TGG | 0.506212 | 4.4:-72815648 | None:intergenic |
| TCCTTGGAGCTTCCACCTGA+AGG | 0.508716 | 4.4:-72815622 | None:intergenic |
| ATCTTTCAGGCCAAGTGCAA+TGG | 0.508729 | 4.4:+72808916 | MS.gene48744:CDS |
| TTTCCAGGCTAAAGCGGGAC+CGG | 0.509058 | 4.4:-72803730 | None:intergenic |
| ACGGTGCTACTGGTTGTCCT+TGG | 0.511032 | 4.4:-72815638 | None:intergenic |
| CTCCACCAGATCGGTTCCGC+CGG | 0.511316 | 4.4:+72803711 | MS.gene48744:CDS |
| TGATTAGATACACCAGATAA+GGG | 0.512264 | 4.4:-72815812 | None:intergenic |
| GTCTCGGCAGCATCAGTATC+CGG | 0.513495 | 4.4:+72803779 | MS.gene48744:CDS |
| TTGAGTGGAGCCTGGAAACT+TGG | 0.514583 | 4.4:+72805559 | MS.gene48744:CDS |
| AGACGGATCGCGTGATTTGG+CGG | 0.516807 | 4.4:-72803760 | None:intergenic |
| TTCCCGTGTATTACGATACA+AGG | 0.517523 | 4.4:+72810939 | MS.gene48744:CDS |
| CACAATTTGGTGATACTGAA+AGG | 0.517575 | 4.4:+72815903 | MS.gene48744:CDS |
| ATCATCTTCAAGATTGGATG+TGG | 0.518956 | 4.4:-72815951 | None:intergenic |
| ACTTGATAAACATGCTGTCC+TGG | 0.519009 | 4.4:+72815062 | MS.gene48744:CDS |
| TCCTAAGGATCTTAAGGGAA+TGG | 0.524386 | 4.4:+72804058 | MS.gene48744:CDS |
| CGTGGAGGCCAATCAGCAAA+AGG | 0.525518 | 4.4:-72815977 | None:intergenic |
| AAAACCATTGGTAGAATCAT+CGG | 0.526198 | 4.4:-72811824 | None:intergenic |
| GCAGGAAATGGGATTGTTGG+AGG | 0.526955 | 4.4:+72805184 | MS.gene48744:intron |
| TAGATGAGCTAGCATTCCTT+GGG | 0.527101 | 4.4:-72816174 | None:intergenic |
| TAGGATGGATGCTGGGAAGA+TGG | 0.527113 | 4.4:+72803899 | MS.gene48744:CDS |
| GTCAGGAGTGGCATAAGCAA+TGG | 0.528064 | 4.4:-72815323 | None:intergenic |
| TAATGTTCAAAGTGTTCCTA+AGG | 0.530222 | 4.4:+72804043 | MS.gene48744:CDS |
| TGCAGATTAGATGAGTCACC+AGG | 0.531071 | 4.4:-72805613 | None:intergenic |
| ACTTCAGATTGCGGAGTCGT+TGG | 0.532035 | 4.4:+72805220 | MS.gene48744:CDS |
| CCAGAAGCAGTGCTTAAGAC+AGG | 0.532674 | 4.4:-72812539 | None:intergenic |
| ATGGATGTTACTTGACCCAC+AGG | 0.532744 | 4.4:-72815776 | None:intergenic |
| GGGTATCAAGTTCTTTGGCA+AGG | 0.533522 | 4.4:-72812816 | None:intergenic |
| GTCGGTTGACCATGTCTCCT+AGG | 0.533647 | 4.4:-72815041 | None:intergenic |
| TCTGCAATGGTTAAAACCAT+TGG | 0.534089 | 4.4:-72811836 | None:intergenic |
| ACAACCGATGATTCTACCAA+TGG | 0.534149 | 4.4:+72811820 | MS.gene48744:CDS |
| ATCTGGTTCCTGACTTGCAA+AGG | 0.535675 | 4.4:+72808876 | MS.gene48744:CDS |
| GATAGATGAGAAAGCATCAC+TGG | 0.538809 | 4.4:-72808846 | None:intergenic |
| CTATAGCTCGATGAATAAGA+TGG | 0.539156 | 4.4:-72805262 | None:intergenic |
| AACCCTTATGTGTACCCTTG+GGG | 0.539200 | 4.4:+72815134 | MS.gene48744:CDS |
| TAAAGTTTCCAGGCTAAAGC+GGG | 0.541551 | 4.4:-72803735 | None:intergenic |
| GAAAGGAAAACAGTTGCAGC+TGG | 0.543442 | 4.4:+72815920 | MS.gene48744:CDS |
| TGAACAACATGCACAATCCC+AGG | 0.543969 | 4.4:-72803936 | None:intergenic |
| CCAAATCACGCGATCCGTCT+CGG | 0.544998 | 4.4:+72803763 | MS.gene48744:CDS |
| CTGCAACAACAATGTCAAGA+TGG | 0.545814 | 4.4:+72808171 | MS.gene48744:CDS |
| AAATAGAATTTGCAACCCCA+AGG | 0.546112 | 4.4:-72815149 | None:intergenic |
| TTACCCCAACAAATCCAAAA+GGG | 0.549849 | 4.4:-72816470 | None:intergenic |
| TCTACCCACTGTGGTTGAAG+GGG | 0.551211 | 4.4:-72816374 | None:intergenic |
| GCAATTTCTTCTCAGAACCC+TGG | 0.553112 | 4.4:+72805595 | MS.gene48744:CDS |
| GAATGGCATTAAACAAGATA+GGG | 0.554755 | 4.4:+72816053 | MS.gene48744:CDS |
| TGCAGTTAACGGCCTTCAGG+TGG | 0.554887 | 4.4:+72815610 | MS.gene48744:CDS |
| CTTCAACCACAGTGGGTAGA+GGG | 0.556677 | 4.4:+72816377 | MS.gene48744:CDS |
| CGGAACCGATCTGGTGGAGA+AGG | 0.557316 | 4.4:-72803707 | None:intergenic |
| AGGGTACACATAAGGGTTGG+AGG | 0.558649 | 4.4:-72815129 | None:intergenic |
| GACCGGCGGAACCGATCTGG+TGG | 0.559500 | 4.4:-72803713 | None:intergenic |
| TGCTTTCTCATCTATCCCAT+CGG | 0.560584 | 4.4:+72808853 | MS.gene48744:CDS |
| GGTATCAAGTTCTTTGGCAA+GGG | 0.560592 | 4.4:-72812815 | None:intergenic |
| GTTGGAATTTCCAGATGCAC+CGG | 0.560597 | 4.4:-72816017 | None:intergenic |
| TTTGCTTTGCCTAGGAGACA+TGG | 0.560638 | 4.4:+72815032 | MS.gene48744:CDS |
| AGAATTCTGGACAGAATTGG+CGG | 0.561941 | 4.4:-72815720 | None:intergenic |
| GGAGCACCACTTCTTCAGCT+GGG | 0.562071 | 4.4:+72808080 | MS.gene48744:CDS |
| GAATTCTGGACAGAATTGGC+GGG | 0.562938 | 4.4:-72815719 | None:intergenic |
| CAACCACAGTGGGTAGAGGG+CGG | 0.565663 | 4.4:+72816380 | MS.gene48744:CDS |
| TAATTACACTGCTCCTGAGA+TGG | 0.566358 | 4.4:+72808054 | MS.gene48744:CDS |
| CTTGCGAGCAATTAAATGGT+AGG | 0.568377 | 4.4:-72808137 | None:intergenic |
| GTCAATGCTTTGCTTTGCCT+AGG | 0.569127 | 4.4:+72815024 | MS.gene48744:CDS |
| CGCCGAGCTAATAATAAACA+AGG | 0.570376 | 4.4:+72812589 | MS.gene48744:CDS |
| AGTCTATCGGTTTGAACCCA+AGG | 0.572021 | 4.4:+72816158 | MS.gene48744:CDS |
| GCATGGTTTACTTCAGATTG+CGG | 0.574438 | 4.4:+72805211 | MS.gene48744:CDS |
| AAGTCAGGAACCAGATCCGA+TGG | 0.578931 | 4.4:-72808869 | None:intergenic |
| GGATTGTTGGAGGTGAAGCA+TGG | 0.582250 | 4.4:+72805194 | MS.gene48744:CDS |
| CTACCCACTGTGGTTGAAGG+GGG | 0.582446 | 4.4:-72816373 | None:intergenic |
| GTAAAGTTTCCAGGCTAAAG+CGG | 0.583849 | 4.4:-72803736 | None:intergenic |
| ATAGCACCCAGCTGAAGAAG+TGG | 0.584812 | 4.4:-72808086 | None:intergenic |
| CTAAGTTCTGCACAAAGTGG+TGG | 0.585328 | 4.4:-72811785 | None:intergenic |
| TCAAAATTCTTACAAGCATG+TGG | 0.591284 | 4.4:-72810768 | None:intergenic |
| GCACCGGATAATGAACCACT+AGG | 0.592652 | 4.4:-72816001 | None:intergenic |
| TGCCAAAGAACTTGATACCC+AGG | 0.592784 | 4.4:+72812819 | MS.gene48744:CDS |
| GATGAAACAACATTTGATGC+CGG | 0.594371 | 4.4:-72816265 | None:intergenic |
| GGACAGCATGTTTATCAAGT+CGG | 0.595468 | 4.4:-72815059 | None:intergenic |
| GCCTTCAGGTGGAAGCTCCA+AGG | 0.597591 | 4.4:+72815621 | MS.gene48744:CDS |
| CAGTGCTTAAGACAGGGACA+AGG | 0.599466 | 4.4:-72812532 | None:intergenic |
| TCGGAGGCGAGATTGAAGGC+TGG | 0.601856 | 4.4:+72803837 | MS.gene48744:CDS |
| TTCAGTATCACCAAATTGTG+AGG | 0.603278 | 4.4:-72815900 | None:intergenic |
| CCAAGGGTACACATAAGGGT+TGG | 0.603498 | 4.4:-72815132 | None:intergenic |
| TGGTTAGGTTGAGACATCCT+GGG | 0.607429 | 4.4:+72803919 | MS.gene48744:CDS |
| TTGTTGTTGCAGTCAAACAA+AGG | 0.610321 | 4.4:-72808160 | None:intergenic |
| GATAATGAACCACTAGGGCG+TGG | 0.610882 | 4.4:-72815995 | None:intergenic |
| CTCGATGAATAAGATGGGCA+TGG | 0.611719 | 4.4:-72805256 | None:intergenic |
| CCAGGCTAAAGCGGGACCGG+CGG | 0.612691 | 4.4:-72803727 | None:intergenic |
| GATTGGCCTCCACGCCCTAG+TGG | 0.614962 | 4.4:+72815986 | MS.gene48744:CDS |
| GGATACTGATGCTGCCGAGA+CGG | 0.614983 | 4.4:-72803777 | None:intergenic |
| TAATTAATGGATGGCTGAAG+TGG | 0.616939 | 4.4:-72808037 | None:intergenic |
| AATAGAATTTGCAACCCCAA+GGG | 0.617052 | 4.4:-72815148 | None:intergenic |
| TGCCAAGTCCCAAAATTCTG+TGG | 0.619306 | 4.4:+72816135 | MS.gene48744:CDS |
| AGTGGAGCCTGGAAACTTGG+TGG | 0.619812 | 4.4:+72805562 | MS.gene48744:CDS |
| TACGACCTTCTCCACCAGAT+CGG | 0.620628 | 4.4:+72803702 | MS.gene48744:CDS |
| AGCTGTTGAGCAGTCAGGAG+TGG | 0.622583 | 4.4:-72815335 | None:intergenic |
| GGAGCAGTGTAATTAATGGA+TGG | 0.623150 | 4.4:-72808046 | None:intergenic |
| TATAGCTCGATGAATAAGAT+GGG | 0.623474 | 4.4:-72805261 | None:intergenic |
| ATACCTTGTATCGTAATACA+CGG | 0.624670 | 4.4:-72810942 | None:intergenic |
| AGATTGGGGTCCTAAAGCAA+CGG | 0.625317 | 4.4:+72815694 | MS.gene48744:CDS |
| CCCAACAAATCCAAAAGGGG+TGG | 0.627609 | 4.4:-72816466 | None:intergenic |
| GTCCTTCAGTAGATATAGAG+TGG | 0.630972 | 4.4:+72815852 | MS.gene48744:CDS |
| GTTCTGCACAAAGTGGTGGA+AGG | 0.631669 | 4.4:-72811781 | None:intergenic |
| CAGAAGCAGTGCTTAAGACA+GGG | 0.633050 | 4.4:-72812538 | None:intergenic |
| TTCGCTACCGAAGCAAACAA+CGG | 0.634760 | 4.4:-72804002 | None:intergenic |
| GCATCTGGAAATTCCAACAA+TGG | 0.635190 | 4.4:+72816022 | MS.gene48744:CDS |
| ACACTGCTCCTGAGATGGTG+AGG | 0.638853 | 4.4:+72808059 | MS.gene48744:CDS |
| TCATCGAGCTATAGCACCCG+AGG | 0.639167 | 4.4:+72805271 | MS.gene48744:CDS |
| AATTCTGGACAGAATTGGCG+GGG | 0.640042 | 4.4:-72815718 | None:intergenic |
| AGAAGGTCGTAGTCTTGAAG+AGG | 0.641764 | 4.4:-72803690 | None:intergenic |
| GGCCACTCTATATCTACTGA+AGG | 0.646021 | 4.4:-72815854 | None:intergenic |
| TACCTTGTATCGTAATACAC+GGG | 0.650881 | 4.4:-72810941 | None:intergenic |
| ATTTGATTAGGATGGATGCT+GGG | 0.651192 | 4.4:+72803892 | MS.gene48744:CDS |
| TTCCTAAGTTCTGCACAAAG+TGG | 0.656952 | 4.4:-72811788 | None:intergenic |
| ACATAAGGGTTGGAGGAGAG+CGG | 0.662635 | 4.4:-72815122 | None:intergenic |
| AATGAACCACTAGGGCGTGG+AGG | 0.667047 | 4.4:-72815992 | None:intergenic |
| AGTGCTTAAGACAGGGACAA+GGG | 0.667307 | 4.4:-72812531 | None:intergenic |
| TACCCCAACAAATCCAAAAG+GGG | 0.667620 | 4.4:-72816469 | None:intergenic |
| ATCTGTGATAGGAAACCCTG+TGG | 0.670211 | 4.4:+72815760 | MS.gene48744:CDS |
| AGTCAGGAACCAGATCCGAT+GGG | 0.671346 | 4.4:-72808868 | None:intergenic |
| TAGTACCTGAGACTCTGCAA+TGG | 0.674895 | 4.4:-72811849 | None:intergenic |
| ATTGAAGGCTGGATTGACCA+AGG | 0.675287 | 4.4:+72803848 | MS.gene48744:CDS |
| TCTATCAGTAACCTGAACAA+TGG | 0.676581 | 4.4:+72816193 | MS.gene48744:CDS |
| ACTGAAAACAACAGTTGCTG+CGG | 0.682367 | 4.4:+72813879 | MS.gene48744:CDS |
| CACCGGATAATGAACCACTA+GGG | 0.684290 | 4.4:-72816000 | None:intergenic |
| TCCCCGCCCTCTACCCACTG+TGG | 0.700815 | 4.4:-72816383 | None:intergenic |
| TGGATGTTACTTGACCCACA+GGG | 0.701888 | 4.4:-72815775 | None:intergenic |
| GCAGATTAGATGAGTCACCA+GGG | 0.717095 | 4.4:-72805612 | None:intergenic |
| AGACCAGAAGATGCACGAGG+CGG | 0.718681 | 4.4:-72815875 | None:intergenic |
| GACTGATTCTGGAATCCCAG+AGG | 0.719882 | 4.4:+72815574 | MS.gene48744:CDS |
| TCTGTGATAGGAAACCCTGT+GGG | 0.720294 | 4.4:+72815761 | MS.gene48744:CDS |
| AGTAAGATAGAAGAGAAGCG+AGG | 0.733585 | 4.4:+72815542 | MS.gene48744:intron |
| AGTGCTAGTCCATGAACACG+TGG | 0.738043 | 4.4:-72813859 | None:intergenic |
| AAGAACCCAAGAGAACTCTG+AGG | 0.741155 | 4.4:-72816223 | None:intergenic |
| GTAAGACCAGAAGATGCACG+AGG | 0.776735 | 4.4:-72815878 | None:intergenic |
| GAAGGCTGGATTGACCAAGG+CGG | 0.788673 | 4.4:+72803851 | MS.gene48744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 72803588 | 72816492 | 72803588 | ID=MS.gene48744 |
| chr4.4 | mRNA | 72803588 | 72816492 | 72803588 | ID=MS.gene48744.t1;Parent=MS.gene48744 |
| chr4.4 | exon | 72803588 | 72804079 | 72803588 | ID=MS.gene48744.t1.exon1;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72803588 | 72804079 | 72803588 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72805188 | 72805292 | 72805188 | ID=MS.gene48744.t1.exon2;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72805188 | 72805292 | 72805188 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72805544 | 72805651 | 72805544 | ID=MS.gene48744.t1.exon3;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72805544 | 72805651 | 72805544 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72808010 | 72808192 | 72808010 | ID=MS.gene48744.t1.exon4;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72808010 | 72808192 | 72808010 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72808821 | 72808947 | 72808821 | ID=MS.gene48744.t1.exon5;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72808821 | 72808947 | 72808821 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72810716 | 72810777 | 72810716 | ID=MS.gene48744.t1.exon6;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72810716 | 72810777 | 72810716 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72810874 | 72810960 | 72810874 | ID=MS.gene48744.t1.exon7;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72810874 | 72810960 | 72810874 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72811779 | 72811865 | 72811779 | ID=MS.gene48744.t1.exon8;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72811779 | 72811865 | 72811779 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72812497 | 72812610 | 72812497 | ID=MS.gene48744.t1.exon9;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72812497 | 72812610 | 72812497 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72812712 | 72812840 | 72812712 | ID=MS.gene48744.t1.exon10;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72812712 | 72812840 | 72812712 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72813838 | 72813900 | 72813838 | ID=MS.gene48744.t1.exon11;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72813838 | 72813900 | 72813838 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72815018 | 72815179 | 72815018 | ID=MS.gene48744.t1.exon12;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72815018 | 72815179 | 72815018 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72815290 | 72815408 | 72815290 | ID=MS.gene48744.t1.exon13;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72815290 | 72815408 | 72815290 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| chr4.4 | exon | 72815544 | 72816492 | 72815544 | ID=MS.gene48744.t1.exon14;Parent=MS.gene48744.t1 |
| chr4.4 | CDS | 72815544 | 72816492 | 72815544 | ID=cds.MS.gene48744.t1;Parent=MS.gene48744.t1 |
| Gene Sequence |
| Protein sequence |
