AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057439


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057439.t1 MTR_2g043230 98.425 254 4 0 1 254 1 254 0.0 502
MS.gene057439.t1 MTR_4g124910 74.803 254 63 1 1 254 1 253 3.99e-139 391
MS.gene057439.t1 MTR_3g110030 38.947 95 56 2 159 253 3 95 5.75e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057439.t1 AT5G20720 71.484 256 68 2 1 254 1 253 4.09e-129 366
MS.gene057439.t1 AT5G20720 71.484 256 68 2 1 254 1 253 4.09e-129 366
MS.gene057439.t1 AT5G20720 71.484 256 68 2 1 254 1 253 4.09e-129 366
MS.gene057439.t1 AT5G20720 71.484 256 68 2 1 254 1 253 4.09e-129 366

Find 71 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTACCGGCGTATT+TGG 0.270458 2.4:+47000265 None:intergenic
TGTCATGGCTGTACTCTCTT+AGG 0.332407 2.4:-47000198 None:intergenic
TTCATTCTGCTCGACATGTT+AGG 0.390168 2.4:-47002834 MS.gene057439:CDS
GTACACTGCAATCAAGCCTT+TGG 0.401887 2.4:-47001638 MS.gene057439:CDS
CAATCAAGCCTTTGGGTGAC+AGG 0.402537 2.4:-47001630 MS.gene057439:CDS
GGCTTTGTTTGAGCACTTGA+TGG 0.405445 2.4:+47001553 None:intergenic
TATCAGAACTCTATCATTCA+AGG 0.405575 2.4:+47001210 None:intergenic
AAGCTTACTGTTCCAAATGA+AGG 0.410647 2.4:+47000675 None:intergenic
TTTGCCCTTGAAGTCATTAC+CGG 0.412440 2.4:+47000256 None:intergenic
ACCAAGGAGAAACCTTCATT+TGG 0.419164 2.4:-47000687 MS.gene057439:CDS
TCCTGCTCGTAGGTCCTTCA+AGG 0.426073 2.4:-47002803 MS.gene057439:CDS
GAATGATAGAGTTCTGATAA+AGG 0.428615 2.4:-47001206 MS.gene057439:intron
GAATGAAACTGAACACTTGA+TGG 0.432793 2.4:+47002850 None:intergenic
CCTTCACACTAATTTCAACT+TGG 0.433049 2.4:+47001479 None:intergenic
CCTTGATATCATCAGTTTCA+AGG 0.440736 2.4:+47001242 None:intergenic
CAGGTGGTAGCAGTTGGTCC+CGG 0.442169 2.4:-47000353 MS.gene057439:CDS
TGGTCCCGGGCTTGTGGATG+AGG 0.443053 2.4:-47000339 MS.gene057439:CDS
GCCTTCCTCATCCACAAGCC+CGG 0.445614 2.4:+47000334 None:intergenic
TCCAAATGAAGGTTTCTCCT+TGG 0.449870 2.4:+47000686 None:intergenic
AGGAGCGTTGCATCCTTTGA+AGG 0.455252 2.4:-47002880 MS.gene057439:CDS
CCTTGAAACTGATGATATCA+AGG 0.481354 2.4:-47001242 MS.gene057439:CDS
AATGACTTCAAGGGCAAAGA+TGG 0.482709 2.4:-47000251 MS.gene057439:CDS
ATACGCCGGTAATGACTTCA+AGG 0.486053 2.4:-47000261 MS.gene057439:CDS
TTTGACAATCAAAGCCTTGA+AGG 0.489756 2.4:+47002789 None:intergenic
TACACTGCAATCAAGCCTTT+GGG 0.491403 2.4:-47001637 MS.gene057439:CDS
ATATATGCTGCAGATTGAAA+AGG 0.493775 2.4:-47000751 MS.gene057439:intron
AAACCTTTGACTGTTACTCC+TGG 0.503322 2.4:-47000305 MS.gene057439:CDS
TCTGCTCGACATGTTAGGAT+TGG 0.504109 2.4:-47002829 MS.gene057439:CDS
CTGAAGGATGATGACATTGT+TGG 0.506319 2.4:-47001268 MS.gene057439:CDS
TTCAAAGTATGCTGGTACTG+AGG 0.520573 2.4:-47001320 MS.gene057439:CDS
AGGTGGTAGCAGTTGGTCCC+GGG 0.520936 2.4:-47000352 MS.gene057439:CDS
GCCTTGAAGGACCTACGAGC+AGG 0.526587 2.4:+47002802 None:intergenic
AGCAGTTGGTCCCGGGCTTG+TGG 0.527000 2.4:-47000345 MS.gene057439:CDS
GAGGTGGTTGCCGTTGGAGA+AGG 0.528875 2.4:-47001520 MS.gene057439:CDS
CTTGAGGAGTTCAGATGTCA+TGG 0.532308 2.4:-47000213 MS.gene057439:CDS
GGTACTGAGGTGGACTTCAA+TGG 0.535132 2.4:-47001307 MS.gene057439:CDS
ATCAGAACTCTATCATTCAA+GGG 0.538758 2.4:+47001211 None:intergenic
GAGTACAGAACTGTGTTCCC+AGG 0.548022 2.4:+47000287 None:intergenic
TTCCCAGGAGTAACAGTCAA+AGG 0.549921 2.4:+47000302 None:intergenic
CCCGGGCTTGTGGATGAGGA+AGG 0.557286 2.4:-47000335 MS.gene057439:CDS
GTTGTCTATTCAAAGTATGC+TGG 0.560205 2.4:-47001328 MS.gene057439:CDS
GGAGGTGAGGTGGTTGCCGT+TGG 0.560930 2.4:-47001526 MS.gene057439:CDS
AACCTTTGACTGTTACTCCT+GGG 0.561302 2.4:-47000304 MS.gene057439:CDS
CCAAGTTGAAATTAGTGTGA+AGG 0.567424 2.4:-47001479 MS.gene057439:intron
AAGTGTCTTTCCTTCTCCAA+CGG 0.569767 2.4:+47001510 None:intergenic
CCTTCCTCATCCACAAGCCC+GGG 0.573609 2.4:+47000335 None:intergenic
TGAAAAGCATCTTATTCTGA+AGG 0.574274 2.4:-47001284 MS.gene057439:CDS
GAATAGACAACTTGTGCACC+TGG 0.575907 2.4:+47001340 None:intergenic
GTTGGAGAAGGAAAGACACT+TGG 0.579860 2.4:-47001508 MS.gene057439:CDS
AGGCGGTTTGTTTCTTACAG+AGG 0.589539 2.4:-47000712 MS.gene057439:CDS
CAGAAGAGAAGACTCAGAGT+GGG 0.589594 2.4:-47001585 MS.gene057439:CDS
ATGTCACAGGTGGTAGCAGT+TGG 0.591495 2.4:-47000359 MS.gene057439:intron
TGATGGTCGAAGTCCTTCAA+AGG 0.597517 2.4:+47002867 None:intergenic
CATGACATCTGAACTCCTCA+AGG 0.608574 2.4:+47000214 None:intergenic
ATAAGTACCCTGTCACCCAA+AGG 0.609358 2.4:+47001622 None:intergenic
AATCAAGCCTTTGGGTGACA+GGG 0.609714 2.4:-47001629 MS.gene057439:CDS
GTTTCTTACAGAGGCAACCA+AGG 0.611857 2.4:-47000703 MS.gene057439:CDS
AACAAAGCCTCAAGGAGGTG+AGG 0.613391 2.4:-47001539 MS.gene057439:CDS
TATGCTGCAGATTGAAAAGG+CGG 0.624112 2.4:-47000748 MS.gene057439:intron
AAAGTATGCTGGTACTGAGG+TGG 0.625111 2.4:-47001317 MS.gene057439:CDS
GCAGAAGAGAAGACTCAGAG+TGG 0.644549 2.4:-47001586 MS.gene057439:CDS
AGTGCTCAAACAAAGCCTCA+AGG 0.651229 2.4:-47001547 MS.gene057439:CDS
GGATTGGTAATCCTGCTCGT+AGG 0.652074 2.4:-47002813 MS.gene057439:CDS
TTGGAGAAGGAAAGACACTT+GGG 0.658187 2.4:-47001507 MS.gene057439:CDS
GCAACCACCTCACCTCCTTG+AGG 0.660430 2.4:+47001532 None:intergenic
AAAGCCTCAAGGAGGTGAGG+TGG 0.661356 2.4:-47001536 MS.gene057439:CDS
TACGCCGGTAATGACTTCAA+GGG 0.678826 2.4:-47000260 MS.gene057439:CDS
CAGCATCATCAATTTCAACG+AGG 0.718872 2.4:-47002900 MS.gene057439:CDS
GCTCAAACAAAGCCTCAAGG+AGG 0.723993 2.4:-47001544 MS.gene057439:CDS
GTTCTGTACTCCAAATACGC+CGG 0.743437 2.4:-47000275 MS.gene057439:CDS
AGAATGAAAATAAACCTTGG+GGG 0.751739 2.4:+47002750 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAAAATTGTTAAAAGA+CGG + chr2.4:47001419-47001438 None:intergenic 15.0%
!!! ATCATTCTTTAATTTTTCTT+GGG - chr2.4:47001700-47001719 MS.gene057439:intron 15.0%
!!! TGCTATTATAATGTTATTTT+GGG - chr2.4:47000438-47000457 MS.gene057439:intron 15.0%
!!! TTCATTTTTTAATTTTGATC+TGG - chr2.4:47001996-47002015 MS.gene057439:intron 15.0%
!!! TTGCTATTATAATGTTATTT+TGG - chr2.4:47000437-47000456 MS.gene057439:intron 15.0%
!! AAAAACATTGTTGTAATACT+TGG - chr2.4:47002736-47002755 MS.gene057439:intron 20.0%
!! AAAAGAATGAAAATAAACCT+TGG + chr2.4:47000374-47000393 None:intergenic 20.0%
!! AAAGAATGAAAATAAACCTT+GGG + chr2.4:47000373-47000392 None:intergenic 20.0%
!! AAATTGTGCATCAAAATTAA+AGG + chr2.4:47001115-47001134 None:intergenic 20.0%
!! AATTGTGCATCAAAATTAAA+GGG + chr2.4:47001114-47001133 None:intergenic 20.0%
!! ATACATTAACTATAGAGATA+AGG + chr2.4:47002581-47002600 None:intergenic 20.0%
!! GACAATTTGAAAAAGTAATT+CGG - chr2.4:47000892-47000911 MS.gene057439:intron 20.0%
!!! AGGTTTATTTTCATTCTTTT+TGG - chr2.4:47000374-47000393 MS.gene057439:intron 20.0%
!!! GATCATTCTTTAATTTTTCT+TGG - chr2.4:47001699-47001718 MS.gene057439:intron 20.0%
! AAACGCATAATTGTTCTATT+TGG - chr2.4:47001369-47001388 MS.gene057439:intron 25.0%
! AAGAATGAAAATAAACCTTG+GGG + chr2.4:47000372-47000391 None:intergenic 25.0%
! AATTAAAGAATGATCATCGA+AGG + chr2.4:47001694-47001713 None:intergenic 25.0%
! AATTAACTTAAAAAAGCCTC+TGG + chr2.4:47001182-47001201 None:intergenic 25.0%
! ACTTATGTTACACAATTTAG+AGG + chr2.4:47000686-47000705 None:intergenic 25.0%
! AGTGATGAAAACAAAATCAA+CGG - chr2.4:47002054-47002073 MS.gene057439:intron 25.0%
! TGCTACATTTAAATCTTAAG+TGG + chr2.4:47002518-47002537 None:intergenic 25.0%
! TTAAATCTTAAGTGGATGTT+GGG + chr2.4:47002510-47002529 None:intergenic 25.0%
! TTTAAATCTTAAGTGGATGT+TGG + chr2.4:47002511-47002530 None:intergenic 25.0%
!! AACATGTTTTCAAACAAAGA+AGG + chr2.4:47002479-47002498 None:intergenic 25.0%
!! AGTGTTATTGATATTGAAGA+AGG - chr2.4:47000514-47000533 MS.gene057439:intron 25.0%
!! AGTTTTGCTTATATTCTTGT+TGG - chr2.4:47001949-47001968 MS.gene057439:intron 25.0%
!! ATATAAGCAAAACTCTAAAG+AGG + chr2.4:47001943-47001962 None:intergenic 25.0%
!! CAGGGTACTTATAAAAATTA+AGG - chr2.4:47001507-47001526 MS.gene057439:CDS 25.0%
!! TCAATTTGAAATTTCGCAAA+TGG + chr2.4:47000633-47000652 None:intergenic 25.0%
!! TTAATTTTTCTTGGGAAGAA+GGG - chr2.4:47001708-47001727 MS.gene057439:intron 25.0%
!!! ACAATTTTGATGTTGAATGT+GGG - chr2.4:47001078-47001097 MS.gene057439:intron 25.0%
!!! ATTGAAGAAGGTTGTTATTT+TGG - chr2.4:47000526-47000545 MS.gene057439:intron 25.0%
!!! ATTGAGTTCTGAAAAGATAA+TGG - chr2.4:47001009-47001028 MS.gene057439:intron 25.0%
!!! TACAATTTTGATGTTGAATG+TGG - chr2.4:47001077-47001096 MS.gene057439:intron 25.0%
!!! TGAAATGTCTTACTTTTTAG+AGG - chr2.4:47002151-47002170 MS.gene057439:intron 25.0%
!!! TTATTTTGGTTAGAAGAAAG+TGG - chr2.4:47000540-47000559 MS.gene057439:intron 25.0%
!!! TTTAATTTTTCTTGGGAAGA+AGG - chr2.4:47001707-47001726 MS.gene057439:intron 25.0%
AAGTTGCACAAAATATGACA+TGG + chr2.4:47002252-47002271 None:intergenic 30.0%
AGAATGAAAATAAACCTTGG+GGG + chr2.4:47000371-47000390 None:intergenic 30.0%
AGTTGCACAAAATATGACAT+GGG + chr2.4:47002251-47002270 None:intergenic 30.0%
ATATATGCTGCAGATTGAAA+AGG - chr2.4:47002367-47002386 MS.gene057439:intron 30.0%
ATCAGAACTCTATCATTCAA+GGG + chr2.4:47001910-47001929 None:intergenic 30.0%
ATGGGAAAAAGCAACATATA+TGG + chr2.4:47002233-47002252 None:intergenic 30.0%
ATTGTTAAAAGACGGAACTT+TGG + chr2.4:47001411-47001430 None:intergenic 30.0%
CACACATGGATAACAATTTA+TGG - chr2.4:47002088-47002107 MS.gene057439:intron 30.0%
CGGATCATAATTTCAGAAAA+TGG + chr2.4:47000761-47000780 None:intergenic 30.0%
GAACGATATTCATGAGAAAT+AGG + chr2.4:47002695-47002714 None:intergenic 30.0%
GCATAATTCAGTGTAATCAT+AGG + chr2.4:47000739-47000758 None:intergenic 30.0%
GCTGTTTATTTATTAACCAG+AGG - chr2.4:47001163-47001182 MS.gene057439:intron 30.0%
TATCAGAACTCTATCATTCA+AGG + chr2.4:47001911-47001930 None:intergenic 30.0%
TCTTCTTGATTATGCATTTG+TGG - chr2.4:47000569-47000588 MS.gene057439:intron 30.0%
TGCAAATTATCTGATTGTCA+AGG - chr2.4:47002191-47002210 MS.gene057439:intron 30.0%
TGGGAAAAAGCAACATATAT+GGG + chr2.4:47002232-47002251 None:intergenic 30.0%
TTTACGTAGGCATATGTTTA+AGG - chr2.4:47001050-47001069 MS.gene057439:intron 30.0%
TTTCGCAAATTCAAGGTTAT+TGG - chr2.4:47000917-47000936 MS.gene057439:intron 30.0%
! AAAGAGTAAACCACCATTTT+GGG + chr2.4:47000964-47000983 None:intergenic 30.0%
! GAATGATAGAGTTCTGATAA+AGG - chr2.4:47001912-47001931 MS.gene057439:intron 30.0%
!! AGTTCTGAAAAGATAATGGT+GGG - chr2.4:47001013-47001032 MS.gene057439:intron 30.0%
!! TGAAAAGCATCTTATTCTGA+AGG - chr2.4:47001834-47001853 MS.gene057439:intron 30.0%
AAGCTTACTGTTCCAAATGA+AGG + chr2.4:47002446-47002465 None:intergenic 35.0%
AATTGTTAACCCACTTGTGT+TGG - chr2.4:47001233-47001252 MS.gene057439:CDS 35.0%
ACTCACTTATCCATATTGAG+TGG + chr2.4:47002037-47002056 None:intergenic 35.0%
AGACCTCAACAAAACATAAG+AGG + chr2.4:47002312-47002331 None:intergenic 35.0%
CCTTCACACTAATTTCAACT+TGG + chr2.4:47001642-47001661 None:intergenic 35.0%
CCTTGAAACTGATGATATCA+AGG - chr2.4:47001876-47001895 MS.gene057439:intron 35.0%
CCTTGATATCATCAGTTTCA+AGG + chr2.4:47001879-47001898 None:intergenic 35.0%
CGCATAATTGTTCTATTTGG+AGG - chr2.4:47001372-47001391 MS.gene057439:intron 35.0%
GAATGAAACTGAACACTTGA+TGG + chr2.4:47000271-47000290 None:intergenic 35.0%
GATGAAGTAGCAATTTACGT+AGG - chr2.4:47001037-47001056 MS.gene057439:intron 35.0%
GTGCAACTTCATTTCTCATA+CGG - chr2.4:47002263-47002282 MS.gene057439:intron 35.0%
GTTGTCTATTCAAAGTATGC+TGG - chr2.4:47001790-47001809 MS.gene057439:intron 35.0%
GTTTCATCTCCGTATAATAG+AGG + chr2.4:47000820-47000839 None:intergenic 35.0%
TAATCGTGCTGAACATATTC+TGG + chr2.4:47002654-47002673 None:intergenic 35.0%
TACAATCTCATGACCCAAAA+TGG - chr2.4:47000948-47000967 MS.gene057439:intron 35.0%
TATATTAAACCAGTCAGCAG+TGG + chr2.4:47002352-47002371 None:intergenic 35.0%
TGCAACTTCATTTCTCATAC+GGG - chr2.4:47002264-47002283 MS.gene057439:intron 35.0%
TTCACACCACCTCTATTATA+CGG - chr2.4:47000808-47000827 MS.gene057439:intron 35.0%
TTCGGTATTTCGCAAATTCA+AGG - chr2.4:47000910-47000929 MS.gene057439:intron 35.0%
TTGTAATACTTGGATGTCAC+AGG - chr2.4:47002746-47002765 MS.gene057439:intron 35.0%
TTTGACAATCAAAGCCTTGA+AGG + chr2.4:47000332-47000351 None:intergenic 35.0%
! ATTTTTCCCAGTGCCAATTT+CGG - chr2.4:47001312-47001331 MS.gene057439:CDS 35.0%
! CAAAGAGTAAACCACCATTT+TGG + chr2.4:47000965-47000984 None:intergenic 35.0%
! CCAAGTTGAAATTAGTGTGA+AGG - chr2.4:47001639-47001658 MS.gene057439:CDS 35.0%
! GATGAAACTCTTATTTGAGG+CGG - chr2.4:47000832-47000851 MS.gene057439:intron 35.0%
! GGAGATGAAACTCTTATTTG+AGG - chr2.4:47000829-47000848 MS.gene057439:intron 35.0%
! TTTGATCTGGTTTCTCGAAA+TGG - chr2.4:47002009-47002028 MS.gene057439:intron 35.0%
! TTTTAATCAACGTCACTCGT+AGG - chr2.4:47002613-47002632 MS.gene057439:intron 35.0%
!! GAGTTCTGAAAAGATAATGG+TGG - chr2.4:47001012-47001031 MS.gene057439:intron 35.0%
!! GTTTTGAGTACATTACCTTG+AGG - chr2.4:47002889-47002908 MS.gene057439:CDS 35.0%
AAACCTTTGACTGTTACTCC+TGG - chr2.4:47002813-47002832 MS.gene057439:CDS 40.0%
AACCTTTGACTGTTACTCCT+GGG - chr2.4:47002814-47002833 MS.gene057439:CDS 40.0%
AAGGCGGAAGAAAAAACTTC+AGG - chr2.4:47002386-47002405 MS.gene057439:intron 40.0%
AAGTGTCTTTCCTTCTCCAA+CGG + chr2.4:47001611-47001630 None:intergenic 40.0%
AATCTCATGACCCAAAATGG+TGG - chr2.4:47000951-47000970 MS.gene057439:intron 40.0%
AATGACTTCAAGGGCAAAGA+TGG - chr2.4:47002867-47002886 MS.gene057439:CDS 40.0%
ACCAAGGAGAAACCTTCATT+TGG - chr2.4:47002431-47002450 MS.gene057439:intron 40.0%
CAGCATCATCAATTTCAACG+AGG - chr2.4:47000218-47000237 MS.gene057439:CDS 40.0%
CGAAATGGAACCACTCAATA+TGG - chr2.4:47002024-47002043 MS.gene057439:intron 40.0%
CTGAAGGATGATGACATTGT+TGG - chr2.4:47001850-47001869 MS.gene057439:intron 40.0%
GAGTAGGATTCAAGACACTA+TGG - chr2.4:47002286-47002305 MS.gene057439:intron 40.0%
GTGATGTTTGTGTAGCAGTT+TGG + chr2.4:47001211-47001230 None:intergenic 40.0%
TAATACTTGGATGTCACAGG+TGG - chr2.4:47002749-47002768 MS.gene057439:intron 40.0%
TACACTGCAATCAAGCCTTT+GGG - chr2.4:47001481-47001500 MS.gene057439:CDS 40.0%
TATGCTGCAGATTGAAAAGG+CGG - chr2.4:47002370-47002389 MS.gene057439:intron 40.0%
TATTCTTGTTGGACCCAAGT+TGG - chr2.4:47001960-47001979 MS.gene057439:intron 40.0%
TCATCTCCGTATAATAGAGG+TGG + chr2.4:47000817-47000836 None:intergenic 40.0%
TCCAAATGAAGGTTTCTCCT+TGG + chr2.4:47002435-47002454 None:intergenic 40.0%
TTCAAAGTATGCTGGTACTG+AGG - chr2.4:47001798-47001817 MS.gene057439:intron 40.0%
TTCATTCTGCTCGACATGTT+AGG - chr2.4:47000284-47000303 MS.gene057439:CDS 40.0%
TTCATTTCTCATACGGGAGT+AGG - chr2.4:47002270-47002289 MS.gene057439:intron 40.0%
TTGGAGAAGGAAAGACACTT+GGG - chr2.4:47001611-47001630 MS.gene057439:CDS 40.0%
TTTGCCCTTGAAGTCATTAC+CGG + chr2.4:47002865-47002884 None:intergenic 40.0%
! TCAAACAAAGAAGGTACAGC+AGG + chr2.4:47002470-47002489 None:intergenic 40.0%
!! TGGCCTCTTATGTTTTGTTG+AGG - chr2.4:47002306-47002325 MS.gene057439:intron 40.0%
!!! TGTGTTTTGTTTGTACAGCC+AGG - chr2.4:47001760-47001779 MS.gene057439:intron 40.0%
AATCAAGCCTTTGGGTGACA+GGG - chr2.4:47001489-47001508 MS.gene057439:CDS 45.0%
AGTGCTCAAACAAAGCCTCA+AGG - chr2.4:47001571-47001590 MS.gene057439:CDS 45.0%
ATAAGTACCCTGTCACCCAA+AGG + chr2.4:47001499-47001518 None:intergenic 45.0%
ATACGCCGGTAATGACTTCA+AGG - chr2.4:47002857-47002876 MS.gene057439:CDS 45.0%
ATCACCAGACCAACACAAGT+GGG + chr2.4:47001245-47001264 None:intergenic 45.0%
CAGAAGAGAAGACTCAGAGT+GGG - chr2.4:47001533-47001552 MS.gene057439:CDS 45.0%
CATGACATCTGAACTCCTCA+AGG + chr2.4:47002907-47002926 None:intergenic 45.0%
CTCAACTAGTCCACCGAAAT+TGG + chr2.4:47001328-47001347 None:intergenic 45.0%
CTTGAGGAGTTCAGATGTCA+TGG - chr2.4:47002905-47002924 MS.gene057439:CDS 45.0%
CTTGATTGCAGTGTACTGCA+CGG + chr2.4:47001476-47001495 None:intergenic 45.0%
GAAGTCATTACCGGCGTATT+TGG + chr2.4:47002856-47002875 None:intergenic 45.0%
GAATAGACAACTTGTGCACC+TGG + chr2.4:47001781-47001800 None:intergenic 45.0%
GCGGAAGAAAAAACTTCAGG+CGG - chr2.4:47002389-47002408 MS.gene057439:intron 45.0%
GTACACTGCAATCAAGCCTT+TGG - chr2.4:47001480-47001499 MS.gene057439:CDS 45.0%
GTGAAGCACAGACACAAACA+CGG + chr2.4:47000793-47000812 None:intergenic 45.0%
GTTCTGTACTCCAAATACGC+CGG - chr2.4:47002843-47002862 MS.gene057439:CDS 45.0%
GTTGGAGAAGGAAAGACACT+TGG - chr2.4:47001610-47001629 MS.gene057439:CDS 45.0%
GTTTCTTACAGAGGCAACCA+AGG - chr2.4:47002415-47002434 MS.gene057439:intron 45.0%
TACGCCGGTAATGACTTCAA+GGG - chr2.4:47002858-47002877 MS.gene057439:CDS 45.0%
TCTGCTCGACATGTTAGGAT+TGG - chr2.4:47000289-47000308 MS.gene057439:CDS 45.0%
TGATGGTCGAAGTCCTTCAA+AGG + chr2.4:47000254-47000273 None:intergenic 45.0%
TTCCCAGGAGTAACAGTCAA+AGG + chr2.4:47002819-47002838 None:intergenic 45.0%
TTGATTGCAGTGTACTGCAC+GGG + chr2.4:47001475-47001494 None:intergenic 45.0%
TTTAGATAGCCACTGCTGAC+TGG - chr2.4:47002340-47002359 MS.gene057439:intron 45.0%
! AAAGTATGCTGGTACTGAGG+TGG - chr2.4:47001801-47001820 MS.gene057439:intron 45.0%
! AACTCTTATTTGAGGCGGTG+TGG - chr2.4:47000837-47000856 MS.gene057439:intron 45.0%
! ACTCTTATTTGAGGCGGTGT+GGG - chr2.4:47000838-47000857 MS.gene057439:intron 45.0%
! AGGCGGTTTGTTTCTTACAG+AGG - chr2.4:47002406-47002425 MS.gene057439:intron 45.0%
! ATCGAATCTGAGACCTTGAG+AGG + chr2.4:47001294-47001313 None:intergenic 45.0%
! CGGTTGATATTGCACACACA+TGG - chr2.4:47002074-47002093 MS.gene057439:intron 45.0%
! TGTAATCATAGGCGTCGTGT+CGG + chr2.4:47000728-47000747 None:intergenic 45.0%
! TTAACCCACTTGTGTTGGTC+TGG - chr2.4:47001238-47001257 MS.gene057439:CDS 45.0%
! TTGTGTTGGTCTGGTGATGT+TGG - chr2.4:47001247-47001266 MS.gene057439:CDS 45.0%
!! GGCTTTGTTTGAGCACTTGA+TGG + chr2.4:47001568-47001587 None:intergenic 45.0%
!! TCAAATTAAATTAAATAAAA+TGG + chr2.4:47000495-47000514 None:intergenic 5.0%
AACAAAGCCTCAAGGAGGTG+AGG - chr2.4:47001579-47001598 MS.gene057439:CDS 50.0%
AGTCCACCGAAATTGGCACT+GGG + chr2.4:47001321-47001340 None:intergenic 50.0%
ATGTCACAGGTGGTAGCAGT+TGG - chr2.4:47002759-47002778 MS.gene057439:intron 50.0%
CAATCAAGCCTTTGGGTGAC+AGG - chr2.4:47001488-47001507 MS.gene057439:CDS 50.0%
CACAAACACGGACACAGACA+CGG + chr2.4:47000781-47000800 None:intergenic 50.0%
CATCACCAGACCAACACAAG+TGG + chr2.4:47001246-47001265 None:intergenic 50.0%
GAGTACAGAACTGTGTTCCC+AGG + chr2.4:47002834-47002853 None:intergenic 50.0%
GCAGAAGAGAAGACTCAGAG+TGG - chr2.4:47001532-47001551 MS.gene057439:CDS 50.0%
GCTCAAACAAAGCCTCAAGG+AGG - chr2.4:47001574-47001593 MS.gene057439:CDS 50.0%
TAGTCCACCGAAATTGGCAC+TGG + chr2.4:47001322-47001341 None:intergenic 50.0%
TTTCCCAGTGCCAATTTCGG+TGG - chr2.4:47001315-47001334 MS.gene057439:CDS 50.0%
! GGATTGGTAATCCTGCTCGT+AGG - chr2.4:47000305-47000324 MS.gene057439:CDS 50.0%
! GGTACTGAGGTGGACTTCAA+TGG - chr2.4:47001811-47001830 MS.gene057439:intron 50.0%
! TTGGTCTGGTGATGTTGGCT+TGG - chr2.4:47001252-47001271 MS.gene057439:CDS 50.0%
!! AGGAGCGTTGCATCCTTTGA+AGG - chr2.4:47000238-47000257 MS.gene057439:CDS 50.0%
!! TGGTCTGGTGATGTTGGCTT+GGG - chr2.4:47001253-47001272 MS.gene057439:CDS 50.0%
AAAGCCTCAAGGAGGTGAGG+TGG - chr2.4:47001582-47001601 MS.gene057439:CDS 55.0%
AACCTTGGGGGCAACAACAG+TGG + chr2.4:47000359-47000378 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr2.4:47001278-47001297 MS.gene057439:CDS 55.0%
TCCTGCTCGTAGGTCCTTCA+AGG - chr2.4:47000315-47000334 MS.gene057439:CDS 55.0%
! CGGTGTGGGTACTCTGAAAG+GGG - chr2.4:47000852-47000871 MS.gene057439:intron 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr2.4:47001280-47001299 None:intergenic 55.0%
! GCGGTGTGGGTACTCTGAAA+GGG - chr2.4:47000851-47000870 MS.gene057439:intron 55.0%
! GTTGGACCCAAGTTGGCGAA+TGG - chr2.4:47001967-47001986 MS.gene057439:intron 55.0%
!! GTGATGTTGGCTTGGGACCT+TGG - chr2.4:47001260-47001279 MS.gene057439:CDS 55.0%
ACCACCGCCATTCGCCAACT+TGG + chr2.4:47001977-47001996 None:intergenic 60.0%
AGGTGGTAGCAGTTGGTCCC+GGG - chr2.4:47002766-47002785 MS.gene057439:CDS 60.0%
CAGGTGGTAGCAGTTGGTCC+CGG - chr2.4:47002765-47002784 MS.gene057439:CDS 60.0%
CCACCGCCATTCGCCAACTT+GGG + chr2.4:47001976-47001995 None:intergenic 60.0%
CCTTCCTCATCCACAAGCCC+GGG + chr2.4:47002786-47002805 None:intergenic 60.0%
CTTGGGGGCAACAACAGTGG+CGG + chr2.4:47000356-47000375 None:intergenic 60.0%
GAGGTGGTTGCCGTTGGAGA+AGG - chr2.4:47001598-47001617 MS.gene057439:CDS 60.0%
GCAACCACCTCACCTCCTTG+AGG + chr2.4:47001589-47001608 None:intergenic 60.0%
GCCTTCCTCATCCACAAGCC+CGG + chr2.4:47002787-47002806 None:intergenic 60.0%
GCCTTGAAGGACCTACGAGC+AGG + chr2.4:47000319-47000338 None:intergenic 60.0%
GGCGGTGTGGGTACTCTGAA+AGG - chr2.4:47000850-47000869 MS.gene057439:intron 60.0%
! GGACCCAAGTTGGCGAATGG+CGG - chr2.4:47001970-47001989 MS.gene057439:intron 60.0%
AGCAGTTGGTCCCGGGCTTG+TGG - chr2.4:47002773-47002792 MS.gene057439:CDS 65.0%
CCCGGGCTTGTGGATGAGGA+AGG - chr2.4:47002783-47002802 MS.gene057439:CDS 65.0%
CGCCACTGTTGTTGCCCCCA+AGG - chr2.4:47000354-47000373 MS.gene057439:intron 65.0%
GGAGGTGAGGTGGTTGCCGT+TGG - chr2.4:47001592-47001611 MS.gene057439:CDS 65.0%
TGGTCCCGGGCTTGTGGATG+AGG - chr2.4:47002779-47002798 MS.gene057439:CDS 65.0%
! AGGCGTCGTGTCGGTGCTTC+AGG + chr2.4:47000719-47000738 None:intergenic 65.0%
! CCCAAGTTGGCGAATGGCGG+TGG - chr2.4:47001973-47001992 MS.gene057439:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 47000199 47002941 47000199 ID=MS.gene057439
chr2.4 mRNA 47000199 47002941 47000199 ID=MS.gene057439.t1;Parent=MS.gene057439
chr2.4 exon 47002765 47002941 47002765 ID=MS.gene057439.t1.exon1;Parent=MS.gene057439.t1
chr2.4 CDS 47002765 47002941 47002765 ID=cds.MS.gene057439.t1;Parent=MS.gene057439.t1
chr2.4 exon 47001480 47001659 47001480 ID=MS.gene057439.t1.exon2;Parent=MS.gene057439.t1
chr2.4 CDS 47001480 47001659 47001480 ID=cds.MS.gene057439.t1;Parent=MS.gene057439.t1
chr2.4 exon 47001207 47001362 47001207 ID=MS.gene057439.t1.exon3;Parent=MS.gene057439.t1
chr2.4 CDS 47001207 47001362 47001207 ID=cds.MS.gene057439.t1;Parent=MS.gene057439.t1
chr2.4 exon 47000683 47000760 47000683 ID=MS.gene057439.t1.exon4;Parent=MS.gene057439.t1
chr2.4 CDS 47000683 47000760 47000683 ID=cds.MS.gene057439.t1;Parent=MS.gene057439.t1
chr2.4 exon 47000199 47000372 47000199 ID=MS.gene057439.t1.exon5;Parent=MS.gene057439.t1
chr2.4 CDS 47000199 47000372 47000199 ID=cds.MS.gene057439.t1;Parent=MS.gene057439.t1
Gene Sequence

>MS.gene057439

ATGGCTTCTTCTCAGTTAACAGCATCATCAATTTCAACGAGGAGCGTTGCATCCTTTGAAGGACTTCGACCATCAAGTGTTCAGTTTCATTCTGCTCGACATGTTAGGATTGGTAATCCTGCTCGTAGGTCCTTCAAGGCTTTGATTGTCAAAGCCGCCACTGTTGTTGCCCCCAAGGTTTATTTTCATTCTTTTTGGTTTTAATTTTATATAAATTAAGAATTGAAAGTAATGTTTTTTGCTATTATAATGTTATTTTGGGTTAATTTTATAAAGAATTGTGTAGTTTTATACCATTTTATTTAATTTAATTTGAGTGTTATTGATATTGAAGAAGGTTGTTATTTTGGTTAGAAGAAAGTGGCGAAATTCTTCTTGATTATGCATTTGTGGAAGTGTTAAGTTTTATCATTTGTTATTTGAGTAAACAACCATTTGCGAAATTTCAAATTGAGACTACAAATTTATGAATTATAAAATTGCTCCTCTAAATTGTGTAACATAAGTTGAAATACTTCCTGAAGCACCGACACGACGCCTATGATTACACTGAATTATGCCATTTTCTGAAATTATGATCCGTGTCTGTGTCCGTGTTTGTGTCTGTGCTTCACACCACCTCTATTATACGGAGATGAAACTCTTATTTGAGGCGGTGTGGGTACTCTGAAAGGGGCATTTTGATTGACGTTAGACAATTTGAAAAAGTAATTCGGTATTTCGCAAATTCAAGGTTATTGGAAGACACTTACAATCTCATGACCCAAAATGGTGGTTTACTCTTTGTTATTTTGCTTAGAGAATGTTTGAATTGAGTTCTGAAAAGATAATGGTGGGTGATGAAGTAGCAATTTACGTAGGCATATGTTTAAGGAAAGTACAATTTTGATGTTGAATGTGGGTATCTTCATTCCCTTTAATTTTGATGCACAATTTCATTCTGATTTTTCTAAAAATTTGTCTTGCTGTTTATTTATTAACCAGAGGCTTTTTTAAGTTAATTATTCAACCAAACTGCTACACAAACATCACATAATTGTTAACCCACTTGTGTTGGTCTGGTGATGTTGGCTTGGGACCTTGGAGTGTGCTCCTCTCAAGGTCTCAGATTCGATTTTTCCCAGTGCCAATTTCGGTGGACTAGTTGAGCTTCTTCAAAAAAAAAAAAAAAAACGCATAATTGTTCTATTTGGAGGACTGAGATAGTTTCCAAAGTTCCGTCTTTTAACAATTTTATGATTCAATGCTACATGCATCTAAATGTTAGTTTTATCCCGTGCAGTACACTGCAATCAAGCCTTTGGGTGACAGGGTACTTATAAAAATTAAGGAAGCAGAAGAGAAGACTCAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGAGGTGAGGTGGTTGCCGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGGTAATGTTGCTATTTTCTGATGTCATTAAACCTTCGATGATCATTCTTTAATTTTTCTTGGGAAGAAGGGAGTTTTCTCTGTAAGCTTAATTATTGTGATGTGTTTTGTTTGTACAGCCAGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACTGAGGTGGACTTCAATGGTGAAAAGCATCTTATTCTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAATGATAGAGTTCTGATAAAGGTAATTCCTCTTTAGAGTTTTGCTTATATTCTTGTTGGACCCAAGTTGGCGAATGGCGGTGGTTCATTTTTTAATTTTGATCTGGTTTCTCGAAATGGAACCACTCAATATGGATAAGTGAGTGATGAAAACAAAATCAACGGTTGATATTGCACACACATGGATAACAATTTATGGATTTGCAAAAATATCAGTTGTTGATTTTGACATCAGTATTTGAAATGTCTTACTTTTTAGAGGATCTTTTAAATCATATTTGCAAATTATCTGATTGTCAAGGAATATGTTGCTTTTTCCCATATATGTTGCTTTTTCCCATGTCATATTTTGTGCAACTTCATTTCTCATACGGGAGTAGGATTCAAGACACTATGGCCTCTTATGTTTTGTTGAGGTCTGTGATAGTTTTAGATAGCCACTGCTGACTGGTTTAATATATGCTGCAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAACCTTCATTTGGAACAGTAAGCTTTCCTGCTGTACCTTCTTTGTTTGAAAACATGTTATAGTTTACCCAACATCCACTTAAGATTTAAATGTAGCACAATCTCACAAAGTCGAGTCTTGTAAGTTATATGTTTAAGCCTTATCTCTATAGTTAATGTATGTGAGACTTGAGTTTTAATCAACGTCACTCGTAGGAAATTGCATGTTTTGCCAGAATATGTTCAGCACGATTAATTGACAATTGACATTATCCTATTTCTCATGAATATCGTTCAATCAAATGATGCATTGTTTAAAAAACATTGTTGTAATACTTGGATGTCACAGGTGGTAGCAGTTGGTCCCGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTACTCCTGGGAACACAGTTCTGTACTCCAAATACGCCGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATTACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAG

Protein sequence

>MS.gene057439.t1

MASSQLTASSISTRSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS