Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49363.t1 | XP_003590556.1 | 97.3 | 112 | 0 | 1 | 1 | 112 | 1 | 109 | 1.40E-52 | 215.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49363.t1 | Q93V47 | 57.6 | 92 | 39 | 0 | 21 | 112 | 9 | 100 | 2.0e-26 | 119.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49363.t1 | G7ICP9 | 97.3 | 112 | 0 | 1 | 1 | 112 | 1 | 109 | 1.0e-52 | 215.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene49363 | 0.803443 | 3.48E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene49363 | 0.810152 | 1.33E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene49363 | 0.824721 | 6.92E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene49363 | 0.810946 | 8.95E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene49363 | 0.801006 | 1.10E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene49363 | 0.827907 | 1.21E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49363.t1 | MTR_1g071100 | 97.321 | 112 | 0 | 1 | 1 | 112 | 1 | 109 | 1.26e-75 | 219 |
| MS.gene49363.t1 | MTR_1g076640 | 62.353 | 85 | 32 | 0 | 28 | 112 | 24 | 108 | 2.42e-32 | 109 |
| MS.gene49363.t1 | MTR_1g010050 | 37.037 | 81 | 49 | 1 | 33 | 111 | 45 | 125 | 6.99e-16 | 68.6 |
| MS.gene49363.t1 | MTR_1g076580 | 49.367 | 79 | 37 | 1 | 6 | 84 | 5 | 80 | 1.76e-15 | 66.2 |
| MS.gene49363.t1 | MTR_1g076580 | 49.367 | 79 | 37 | 1 | 6 | 84 | 5 | 80 | 2.20e-15 | 65.9 |
| MS.gene49363.t1 | MTR_1g076640 | 56.897 | 58 | 25 | 0 | 27 | 84 | 23 | 80 | 2.22e-14 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49363.t1 | AT3G63420 | 51.000 | 100 | 45 | 1 | 13 | 112 | 3 | 98 | 2.63e-32 | 109 |
| MS.gene49363.t1 | AT3G63420 | 51.000 | 100 | 45 | 1 | 13 | 112 | 3 | 98 | 2.63e-32 | 109 |
| MS.gene49363.t1 | AT3G63420 | 51.000 | 100 | 45 | 1 | 13 | 112 | 43 | 138 | 3.88e-32 | 110 |
| MS.gene49363.t1 | AT3G22942 | 57.609 | 92 | 39 | 0 | 21 | 112 | 9 | 100 | 6.80e-31 | 105 |
Find 25 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGACCTGTAAACCTCTTA+TGG | 0.220609 | 1.1:-53494070 | MS.gene49363:CDS |
| TTCTCTGATAACAGAGTTCA+TGG | 0.283632 | 1.1:-53494089 | MS.gene49363:intron |
| ACAAGATACTAAATTTCTTC+AGG | 0.319990 | 1.1:-53496789 | MS.gene49363:intron |
| CTATCCCATAAGAGGTTTAC+AGG | 0.323497 | 1.1:+53494065 | None:intergenic |
| TAAACCTCTTATGGGATAGA+TGG | 0.349715 | 1.1:-53494061 | MS.gene49363:CDS |
| TGAATGTATTCAGGAAGAAT+TGG | 0.367884 | 1.1:-53494917 | MS.gene49363:intron |
| CAAACCATCTATCCCATAAG+AGG | 0.395789 | 1.1:+53494057 | None:intergenic |
| AGAAATTACTCTGGGATTAG+TGG | 0.405087 | 1.1:+53494174 | None:intergenic |
| GTGTGTTATGGCGTCTGAAA+CGG | 0.409047 | 1.1:-53496930 | None:intergenic |
| TACTCTGGGATTAGTGGATC+AGG | 0.437858 | 1.1:+53494180 | None:intergenic |
| TGGACCTGTAAACCTCTTAT+GGG | 0.444843 | 1.1:-53494069 | MS.gene49363:CDS |
| TTATGGGATAGATGGTTTGA+AGG | 0.464564 | 1.1:-53494053 | MS.gene49363:CDS |
| GTTTCAGCTGCTGTAGCTGA+TGG | 0.513520 | 1.1:-53496866 | MS.gene49363:CDS |
| TAGATGGTTTGAAGGGCCTC+AGG | 0.521777 | 1.1:-53494045 | MS.gene49363:CDS |
| GTCTGAAACGGCGTCGTCTG+CGG | 0.528907 | 1.1:-53496918 | MS.gene49363:CDS |
| ATCCGCAAGCATGTAGATGT+TGG | 0.541129 | 1.1:-53494022 | MS.gene49363:CDS |
| CAGCTGAAACAGAGACAACA+AGG | 0.554529 | 1.1:+53496879 | None:intergenic |
| TATGGGATAGATGGTTTGAA+GGG | 0.555121 | 1.1:-53494052 | MS.gene49363:CDS |
| GCGCAGATTGCTACAAAACA+TGG | 0.600608 | 1.1:-53494211 | MS.gene49363:intron |
| ATCCAACATCTACATGCTTG+CGG | 0.601467 | 1.1:+53494020 | None:intergenic |
| CTACATGCTTGCGGATCCTG+AGG | 0.605370 | 1.1:+53494029 | None:intergenic |
| GATGGTGCGACTGATAAAAG+AGG | 0.615976 | 1.1:-53496848 | MS.gene49363:CDS |
| AAATGTGTCGGCTATATGCA+AGG | 0.619090 | 1.1:-53494875 | MS.gene49363:CDS |
| TGAGAAAACAGAAAATGTGT+CGG | 0.654226 | 1.1:-53494887 | MS.gene49363:CDS |
| AGCTGAAACAGAGACAACAA+GGG | 0.753283 | 1.1:+53496880 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGAATTTTATTTTTATC+AGG | + | chr1.1:53494505-53494524 | None:intergenic | 10.0% |
| !! | AAAAAACACATAAATACTAT+GGG | + | chr1.1:53495025-53495044 | None:intergenic | 15.0% |
| !! | AAAATAAACTTAACTTATAG+CGG | - | chr1.1:53495711-53495730 | MS.gene49363:intron | 15.0% |
| !! | AAATAAAAATAGATACTGTT+CGG | + | chr1.1:53496269-53496288 | None:intergenic | 15.0% |
| !! | ATCAAAAAAGAAAAAATGTA+TGG | + | chr1.1:53495805-53495824 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAAATGAAGGTA+CGG | + | chr1.1:53496477-53496496 | None:intergenic | 15.0% |
| !!! | AATTTTGGTTATTTTTTCAA+CGG | + | chr1.1:53496330-53496349 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATAAAAACGAC+CGG | - | chr1.1:53494581-53494600 | MS.gene49363:intron | 15.0% |
| !! | ACAAAAAAAAAAACCCAAAT+TGG | + | chr1.1:53494711-53494730 | None:intergenic | 20.0% |
| !! | ACTAAAGATCATAAATTCAA+AGG | + | chr1.1:53495080-53495099 | None:intergenic | 20.0% |
| !! | CAAAAAACACATAAATACTA+TGG | + | chr1.1:53495026-53495045 | None:intergenic | 20.0% |
| !! | GATAAATTACAAAACAATGT+GGG | - | chr1.1:53495136-53495155 | MS.gene49363:intron | 20.0% |
| !! | GTGTATAATGTATAACTAAA+GGG | - | chr1.1:53494211-53494230 | MS.gene49363:intron | 20.0% |
| !! | TAATTGCTTAAATCAATGTT+AGG | - | chr1.1:53495876-53495895 | MS.gene49363:intron | 20.0% |
| !! | TATATATGGAAAATTGAAAC+CGG | - | chr1.1:53495430-53495449 | MS.gene49363:intron | 20.0% |
| !! | TGATAAATTACAAAACAATG+TGG | - | chr1.1:53495135-53495154 | MS.gene49363:intron | 20.0% |
| !! | TGTGTATAATGTATAACTAA+AGG | - | chr1.1:53494210-53494229 | MS.gene49363:intron | 20.0% |
| !! | TTTATAGCTTAAGCTTATAT+TGG | - | chr1.1:53495243-53495262 | MS.gene49363:intron | 20.0% |
| !!! | ACTTGAGAGTTTTATTTTTT+TGG | + | chr1.1:53496388-53496407 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAAATGAAGGTAC+GGG | + | chr1.1:53496476-53496495 | None:intergenic | 20.0% |
| !!! | CGTCAAATTTTAAAAAATGA+AGG | + | chr1.1:53496482-53496501 | None:intergenic | 20.0% |
| !!! | GAACAGTATCTATTTTTATT+TGG | - | chr1.1:53496268-53496287 | MS.gene49363:intron | 20.0% |
| !!! | TCAATTTTCCATATATACTT+TGG | + | chr1.1:53495427-53495446 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTCTACTTAGTT+TGG | - | chr1.1:53494820-53494839 | MS.gene49363:intron | 20.0% |
| !!! | TTTTAACAGAAGCTAATTAT+AGG | + | chr1.1:53495939-53495958 | None:intergenic | 20.0% |
| !!! | TTTTTTGTAAGAGATTAGAT+GGG | - | chr1.1:53494723-53494742 | MS.gene49363:intron | 20.0% |
| !!! | TTTTTTTGTAAGAGATTAGA+TGG | - | chr1.1:53494722-53494741 | MS.gene49363:intron | 20.0% |
| ! | AACAATCATGCATCAAAATT+GGG | + | chr1.1:53495184-53495203 | None:intergenic | 25.0% |
| ! | ACAACTCTAACAAAAAAACT+AGG | + | chr1.1:53496627-53496646 | None:intergenic | 25.0% |
| ! | ACAAGATACTAAATTTCTTC+AGG | - | chr1.1:53494147-53494166 | MS.gene49363:intron | 25.0% |
| ! | ATTTCCTTCCAAAGTATATA+TGG | - | chr1.1:53495416-53495435 | MS.gene49363:intron | 25.0% |
| ! | CATTCAATAACTCATGTATT+TGG | + | chr1.1:53494543-53494562 | None:intergenic | 25.0% |
| ! | CTGATATAGATAATACTTGT+TGG | - | chr1.1:53496554-53496573 | MS.gene49363:intron | 25.0% |
| ! | TCTAACAAAAAAACTAGGAT+TGG | + | chr1.1:53496622-53496641 | None:intergenic | 25.0% |
| ! | TCTCCAATTTGAAAATGTTA+AGG | + | chr1.1:53494624-53494643 | None:intergenic | 25.0% |
| ! | TTAAGCTTATATTGGAATGT+TGG | - | chr1.1:53495251-53495270 | MS.gene49363:intron | 25.0% |
| !! | AAGGCTTAAACAATTTTACT+TGG | - | chr1.1:53496698-53496717 | MS.gene49363:intron | 25.0% |
| !! | AATTAGCTTCTGTTAAAAGT+TGG | - | chr1.1:53495941-53495960 | MS.gene49363:intron | 25.0% |
| !! | AGTCCTTAACATTTTCAAAT+TGG | - | chr1.1:53494618-53494637 | MS.gene49363:intron | 25.0% |
| !! | ATAGATAATACTTGTTGGAT+TGG | - | chr1.1:53496559-53496578 | MS.gene49363:intron | 25.0% |
| !! | CATCAAAAGCAAGATAATTT+TGG | + | chr1.1:53496345-53496364 | None:intergenic | 25.0% |
| !! | CTTTTGATGAAAATAGTAGA+GGG | - | chr1.1:53496356-53496375 | MS.gene49363:intron | 25.0% |
| !! | TATATTGGAATGTTGGTTAA+CGG | - | chr1.1:53495258-53495277 | MS.gene49363:intron | 25.0% |
| !! | TTTTCCATATATACTTTGGA+AGG | + | chr1.1:53495423-53495442 | None:intergenic | 25.0% |
| !! | TTTTGATGAAAATAGTAGAG+GGG | - | chr1.1:53496357-53496376 | MS.gene49363:intron | 25.0% |
| !! | TTTTTGTAAGAGATTAGATG+GGG | - | chr1.1:53494724-53494743 | MS.gene49363:intron | 25.0% |
| !!! | TCTTTGCTCTAGATTTTATA+TGG | - | chr1.1:53494778-53494797 | MS.gene49363:intron | 25.0% |
| !!! | TTTTTTTCCTGAATGTATTC+AGG | - | chr1.1:53496010-53496029 | MS.gene49363:intron | 25.0% |
| AAAACTGTTAGGAACCAATT+TGG | - | chr1.1:53494694-53494713 | MS.gene49363:intron | 30.0% | |
| AAACTGTTAGGAACCAATTT+GGG | - | chr1.1:53494695-53494714 | MS.gene49363:intron | 30.0% | |
| AATAGACCAACAAATTTGTG+TGG | + | chr1.1:53494858-53494877 | None:intergenic | 30.0% | |
| AATATTGTGAGGAACCAAAA+TGG | - | chr1.1:53494754-53494773 | MS.gene49363:intron | 30.0% | |
| AATTCTTCCTGAATACATTC+AGG | + | chr1.1:53496020-53496039 | None:intergenic | 30.0% | |
| ACAACACATTGTACTAAATC+GGG | + | chr1.1:53495535-53495554 | None:intergenic | 30.0% | |
| AGAATACAGAGTAAAGATGT+AGG | + | chr1.1:53496792-53496811 | None:intergenic | 30.0% | |
| AGTTGATCTGATAATTGGTT+TGG | - | chr1.1:53495354-53495373 | MS.gene49363:intron | 30.0% | |
| ATATTGTGAGGAACCAAAAT+GGG | - | chr1.1:53494755-53494774 | MS.gene49363:intron | 30.0% | |
| CAACAATCATGCATCAAAAT+TGG | + | chr1.1:53495185-53495204 | None:intergenic | 30.0% | |
| GAAACACATATTGAACCATA+TGG | - | chr1.1:53495635-53495654 | MS.gene49363:intron | 30.0% | |
| GACAACACATTGTACTAAAT+CGG | + | chr1.1:53495536-53495555 | None:intergenic | 30.0% | |
| TAGGTAAGAGAAATTACTCT+GGG | + | chr1.1:53496773-53496792 | None:intergenic | 30.0% | |
| TCAGGAAATAAATTGTACCA+CGG | + | chr1.1:53494487-53494506 | None:intergenic | 30.0% | |
| TCTCAAATTATTAACGACGT+CGG | + | chr1.1:53494346-53494365 | None:intergenic | 30.0% | |
| TGAATGTATTCAGGAAGAAT+TGG | - | chr1.1:53496019-53496038 | MS.gene49363:intron | 30.0% | |
| TGAGAAAACAGAAAATGTGT+CGG | - | chr1.1:53496049-53496068 | MS.gene49363:intron | 30.0% | |
| TGCTTATTGTTTACAACAGA+AGG | + | chr1.1:53495053-53495072 | None:intergenic | 30.0% | |
| TTAATGCCACACAAATTTGT+TGG | - | chr1.1:53494849-53494868 | MS.gene49363:intron | 30.0% | |
| TTGTGCTACAATATGCTATA+AGG | - | chr1.1:53496679-53496698 | MS.gene49363:intron | 30.0% | |
| ! | ATATGGTGTTTCTTGTTTCT+AGG | - | chr1.1:53494795-53494814 | MS.gene49363:intron | 30.0% |
| ! | ATCGAAGTTGATCTGATAAT+TGG | - | chr1.1:53495349-53495368 | MS.gene49363:intron | 30.0% |
| ! | GCTTTTGATGAAAATAGTAG+AGG | - | chr1.1:53496355-53496374 | MS.gene49363:intron | 30.0% |
| ! | TAACTAAAGGGTATAGATCT+TGG | - | chr1.1:53494223-53494242 | MS.gene49363:intron | 30.0% |
| ! | TTAGGACATTTTGCAAAGTT+GGG | - | chr1.1:53495894-53495913 | MS.gene49363:intron | 30.0% |
| ! | TTTTTATAAAAACGACCGGA+GGG | - | chr1.1:53494585-53494604 | MS.gene49363:intron | 30.0% |
| !! | CTTTAGTTCTTTACACTATG+TGG | - | chr1.1:53495093-53495112 | MS.gene49363:intron | 30.0% |
| !! | TATGGTGTTTCTTGTTTCTA+GGG | - | chr1.1:53494796-53494815 | MS.gene49363:intron | 30.0% |
| !! | TGGTTCCTAACAGTTTTATA+CGG | + | chr1.1:53494691-53494710 | None:intergenic | 30.0% |
| !!! | TTTTTTATAAAAACGACCGG+AGG | - | chr1.1:53494584-53494603 | MS.gene49363:intron | 30.0% |
| AAGTGAACAAAAGGGTCAAT+GGG | + | chr1.1:53496585-53496604 | None:intergenic | 35.0% | |
| ACTAACAACCTATGATGCAT+AGG | + | chr1.1:53496526-53496545 | None:intergenic | 35.0% | |
| AGATTTGACCAATGAGGTTA+TGG | - | chr1.1:53494946-53494965 | MS.gene49363:intron | 35.0% | |
| ATTGTACTAAATCGGGTATC+AGG | + | chr1.1:53495528-53495547 | None:intergenic | 35.0% | |
| CTGACCATATATAGAGGAAT+GGG | - | chr1.1:53494969-53494988 | MS.gene49363:intron | 35.0% | |
| GAATGTGAGTATTTAGCAAG+CGG | - | chr1.1:53495834-53495853 | MS.gene49363:intron | 35.0% | |
| GTAGGTAAGAGAAATTACTC+TGG | + | chr1.1:53496774-53496793 | None:intergenic | 35.0% | |
| GTCATCCGTATAAAACTGTT+AGG | - | chr1.1:53494683-53494702 | MS.gene49363:intron | 35.0% | |
| TAAACCTCTTATGGGATAGA+TGG | - | chr1.1:53496875-53496894 | MS.gene49363:CDS | 35.0% | |
| TACAATGTGTTGTCAAGTAG+TGG | - | chr1.1:53495542-53495561 | MS.gene49363:intron | 35.0% | |
| TATGGGATAGATGGTTTGAA+GGG | - | chr1.1:53496884-53496903 | MS.gene49363:CDS | 35.0% | |
| TATTTAGCAAGCGGTTATGT+TGG | - | chr1.1:53495843-53495862 | MS.gene49363:intron | 35.0% | |
| TCTTTCTGATTTCCTTGCAA+AGG | - | chr1.1:53495754-53495773 | MS.gene49363:intron | 35.0% | |
| TGTAGTAGATTTGACCAATG+AGG | - | chr1.1:53494940-53494959 | MS.gene49363:intron | 35.0% | |
| TGTTGTATTCCTGCATTTGT+TGG | - | chr1.1:53495974-53495993 | MS.gene49363:intron | 35.0% | |
| TTATGGCTGACCATATATAG+AGG | - | chr1.1:53494963-53494982 | MS.gene49363:intron | 35.0% | |
| TTATGGGATAGATGGTTTGA+AGG | - | chr1.1:53496883-53496902 | MS.gene49363:CDS | 35.0% | |
| TTCTCTGATAACAGAGTTCA+TGG | - | chr1.1:53496847-53496866 | MS.gene49363:CDS | 35.0% | |
| TTTCCTTGCAAAGGTTAATG+TGG | - | chr1.1:53495763-53495782 | MS.gene49363:intron | 35.0% | |
| ! | GTTAGGACATTTTGCAAAGT+TGG | - | chr1.1:53495893-53495912 | MS.gene49363:intron | 35.0% |
| ! | TTCTTTGTTATAATGAGCCG+AGG | - | chr1.1:53494652-53494671 | MS.gene49363:intron | 35.0% |
| ! | TTTGGTTATTTCGTCGTAGT+TGG | - | chr1.1:53496286-53496305 | MS.gene49363:intron | 35.0% |
| !! | AGAAATTACTCTGGGATTAG+TGG | + | chr1.1:53496765-53496784 | None:intergenic | 35.0% |
| AAATCGGGTATCAGGAAAAG+CGG | + | chr1.1:53495520-53495539 | None:intergenic | 40.0% | |
| AACCTATGATGCATAGGTAC+GGG | + | chr1.1:53496520-53496539 | None:intergenic | 40.0% | |
| ACCACCCATTCCTCTATATA+TGG | + | chr1.1:53494976-53494995 | None:intergenic | 40.0% | |
| ACCATATATAGAGGAATGGG+TGG | - | chr1.1:53494972-53494991 | MS.gene49363:intron | 40.0% | |
| ACGGATGACAAATTAGTCCT+CGG | + | chr1.1:53494672-53494691 | None:intergenic | 40.0% | |
| AGCTGAAACAGAGACAACAA+GGG | + | chr1.1:53494059-53494078 | None:intergenic | 40.0% | |
| ATCCAACATCTACATGCTTG+CGG | + | chr1.1:53496919-53496938 | None:intergenic | 40.0% | |
| ATGGACCTGTAAACCTCTTA+TGG | - | chr1.1:53496866-53496885 | MS.gene49363:CDS | 40.0% | |
| CAAACCATCTATCCCATAAG+AGG | + | chr1.1:53496882-53496901 | None:intergenic | 40.0% | |
| CAACCTATGATGCATAGGTA+CGG | + | chr1.1:53496521-53496540 | None:intergenic | 40.0% | |
| CAAGTGAACAAAAGGGTCAA+TGG | + | chr1.1:53496586-53496605 | None:intergenic | 40.0% | |
| CATCCCACAAGTGAACAAAA+GGG | + | chr1.1:53496593-53496612 | None:intergenic | 40.0% | |
| CTATCCCATAAGAGGTTTAC+AGG | + | chr1.1:53496874-53496893 | None:intergenic | 40.0% | |
| CTCCAAACATGGATAAGTAC+CGG | - | chr1.1:53496192-53496211 | MS.gene49363:intron | 40.0% | |
| GAACCACATTAACCTTTGCA+AGG | + | chr1.1:53495769-53495788 | None:intergenic | 40.0% | |
| GATTACCAACCAACAAATGC+AGG | + | chr1.1:53495986-53496005 | None:intergenic | 40.0% | |
| GCTGACCATATATAGAGGAA+TGG | - | chr1.1:53494968-53494987 | MS.gene49363:intron | 40.0% | |
| TACCGGTACTTATCCATGTT+TGG | + | chr1.1:53496197-53496216 | None:intergenic | 40.0% | |
| TCATCCCACAAGTGAACAAA+AGG | + | chr1.1:53496594-53496613 | None:intergenic | 40.0% | |
| TCTGTTCGTGCTAGAAGTTT+CGG | - | chr1.1:53495658-53495677 | MS.gene49363:intron | 40.0% | |
| TGGACCTGTAAACCTCTTAT+GGG | - | chr1.1:53496867-53496886 | MS.gene49363:CDS | 40.0% | |
| TGTTTGTATCCGTGCTTCAT+AGG | + | chr1.1:53494297-53494316 | None:intergenic | 40.0% | |
| TTCGGTGAAAGCTGTGATAT+AGG | - | chr1.1:53495676-53495695 | MS.gene49363:intron | 40.0% | |
| ! | GTATTCCTGCATTTGTTGGT+TGG | - | chr1.1:53495978-53495997 | MS.gene49363:intron | 40.0% |
| ! | TGACCCTTTTGTTCACTTGT+GGG | - | chr1.1:53496587-53496606 | MS.gene49363:intron | 40.0% |
| ! | TTGACCCTTTTGTTCACTTG+TGG | - | chr1.1:53496586-53496605 | MS.gene49363:intron | 40.0% |
| !! | AAATGTGTCGGCTATATGCA+AGG | - | chr1.1:53496061-53496080 | MS.gene49363:intron | 40.0% |
| !! | AAGCTTTTTCTGCTGATGTG+TGG | - | chr1.1:53495292-53495311 | MS.gene49363:intron | 40.0% |
| !! | AGTTGTTAGCTCTGAAGCAT+GGG | - | chr1.1:53496167-53496186 | MS.gene49363:intron | 40.0% |
| !! | TAGTTGTTAGCTCTGAAGCA+TGG | - | chr1.1:53496166-53496185 | MS.gene49363:intron | 40.0% |
| !! | TCTAGAGCAAAGACCCATTT+TGG | + | chr1.1:53494771-53494790 | None:intergenic | 40.0% |
| AAACCGGCGTTGTCATATAC+AGG | - | chr1.1:53495446-53495465 | MS.gene49363:intron | 45.0% | |
| AAGCATGGGTACTCCAAACA+TGG | - | chr1.1:53496181-53496200 | MS.gene49363:intron | 45.0% | |
| ACTGGGACATGCTTAATTCG+AGG | - | chr1.1:53494420-53494439 | MS.gene49363:intron | 45.0% | |
| ATCCGCAAGCATGTAGATGT+TGG | - | chr1.1:53496914-53496933 | MS.gene49363:CDS | 45.0% | |
| ATGATGCATAGGTACGGGTA+CGG | + | chr1.1:53496515-53496534 | None:intergenic | 45.0% | |
| ATGGTCAGCCATAACCTCAT+TGG | + | chr1.1:53494957-53494976 | None:intergenic | 45.0% | |
| CAGCTGAAACAGAGACAACA+AGG | + | chr1.1:53494060-53494079 | None:intergenic | 45.0% | |
| GAGTGAAGACCTATGAAGCA+CGG | - | chr1.1:53494285-53494304 | MS.gene49363:intron | 45.0% | |
| GATGGTGCGACTGATAAAAG+AGG | - | chr1.1:53494088-53494107 | MS.gene49363:intron | 45.0% | |
| GCGCAGATTGCTACAAAACA+TGG | - | chr1.1:53496725-53496744 | MS.gene49363:intron | 45.0% | |
| GTTGGTGCAGCAAAAACGTA+CGG | - | chr1.1:53496304-53496323 | MS.gene49363:intron | 45.0% | |
| TAAGAGATTAGATGGGGTCG+CGG | - | chr1.1:53494730-53494749 | MS.gene49363:intron | 45.0% | |
| TACCCGTACCTATGCATCAT+AGG | - | chr1.1:53496515-53496534 | MS.gene49363:intron | 45.0% | |
| TCTAGCACGAACAGACCATA+TGG | + | chr1.1:53495653-53495672 | None:intergenic | 45.0% | |
| TGAAGCACGGATACAAACAC+CGG | - | chr1.1:53494298-53494317 | MS.gene49363:intron | 45.0% | |
| ! | AAATGAAGGTACGGGTACGT+TGG | + | chr1.1:53496468-53496487 | None:intergenic | 45.0% |
| ! | GGACTAGTAATAGTTCCCTC+CGG | + | chr1.1:53494603-53494622 | None:intergenic | 45.0% |
| !! | ACATGGATAAGTACCGGTAC+CGG | - | chr1.1:53496198-53496217 | MS.gene49363:intron | 45.0% |
| !! | GTCAGTATCAGTGTCGTTTC+CGG | + | chr1.1:53494320-53494339 | None:intergenic | 45.0% |
| !! | TACTCTGGGATTAGTGGATC+AGG | + | chr1.1:53496759-53496778 | None:intergenic | 45.0% |
| AAGAGATTAGATGGGGTCGC+GGG | - | chr1.1:53494731-53494750 | MS.gene49363:intron | 50.0% | |
| ACCACGGTAAAGACCAGACT+GGG | + | chr1.1:53494471-53494490 | None:intergenic | 50.0% | |
| CAGCCTGTATATGACAACGC+CGG | + | chr1.1:53495452-53495471 | None:intergenic | 50.0% | |
| CATGACACGTGTTCGACACT+GGG | - | chr1.1:53494403-53494422 | MS.gene49363:intron | 50.0% | |
| GTTTCAGCTGCTGTAGCTGA+TGG | - | chr1.1:53494070-53494089 | MS.gene49363:CDS | 50.0% | |
| TACCACGGTAAAGACCAGAC+TGG | + | chr1.1:53494472-53494491 | None:intergenic | 50.0% | |
| TAGATGGTTTGAAGGGCCTC+AGG | - | chr1.1:53496891-53496910 | MS.gene49363:CDS | 50.0% | |
| TCATAGGTGAAGACCCAGTC+TGG | - | chr1.1:53494455-53494474 | MS.gene49363:intron | 50.0% | |
| TCATGACACGTGTTCGACAC+TGG | - | chr1.1:53494402-53494421 | MS.gene49363:intron | 50.0% | |
| TGATGCATAGGTACGGGTAC+GGG | + | chr1.1:53496514-53496533 | None:intergenic | 50.0% | |
| !! | CATGGATAAGTACCGGTACC+GGG | - | chr1.1:53496199-53496218 | MS.gene49363:intron | 50.0% |
| ACGAGTACCATACGCGTACC+CGG | + | chr1.1:53496237-53496256 | None:intergenic | 55.0% | |
| CTACATGCTTGCGGATCCTG+AGG | + | chr1.1:53496910-53496929 | None:intergenic | 55.0% | |
| TACCATACGCGTACCCGGTA+CGG | + | chr1.1:53496232-53496251 | None:intergenic | 55.0% | |
| ! | ACCCAGTCTGGTCTTTACCG+TGG | - | chr1.1:53494467-53494486 | MS.gene49363:intron | 55.0% |
| !! | GAGGAGCGTCTGTGCTTCAT+AGG | - | chr1.1:53494439-53494458 | MS.gene49363:intron | 55.0% |
| ACCATACGCGTACCCGGTAC+GGG | + | chr1.1:53496231-53496250 | None:intergenic | 60.0% | |
| GGGGTCGCGGGAATATTGTG+AGG | - | chr1.1:53494743-53494762 | MS.gene49363:intron | 60.0% | |
| ! | GTCTGAAACGGCGTCGTCTG+CGG | - | chr1.1:53494018-53494037 | MS.gene49363:CDS | 60.0% |
| ACCCGTACCGGGTACGCGTA+TGG | - | chr1.1:53496227-53496246 | MS.gene49363:intron | 65.0% | |
| TACCGGGTACGCACCCGTAC+CGG | - | chr1.1:53496215-53496234 | MS.gene49363:intron | 65.0% | |
| TACGGGTGCGTACCCGGTAC+CGG | + | chr1.1:53496214-53496233 | None:intergenic | 65.0% | |
| ACCCGGTACGGGTGCGTACC+CGG | + | chr1.1:53496220-53496239 | None:intergenic | 70.0% | |
| ACCGGGTACGCACCCGTACC+GGG | - | chr1.1:53496216-53496235 | MS.gene49363:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53494013 | 53496945 | 53494013 | ID=MS.gene49363 |
| chr1.1 | mRNA | 53494013 | 53496945 | 53494013 | ID=MS.gene49363.t1;Parent=MS.gene49363 |
| chr1.1 | exon | 53496790 | 53496945 | 53496790 | ID=MS.gene49363.t1.exon1;Parent=MS.gene49363.t1 |
| chr1.1 | CDS | 53496790 | 53496945 | 53496790 | ID=cds.MS.gene49363.t1;Parent=MS.gene49363.t1 |
| chr1.1 | exon | 53494874 | 53494926 | 53494874 | ID=MS.gene49363.t1.exon2;Parent=MS.gene49363.t1 |
| chr1.1 | CDS | 53494874 | 53494926 | 53494874 | ID=cds.MS.gene49363.t1;Parent=MS.gene49363.t1 |
| chr1.1 | exon | 53494183 | 53494227 | 53494183 | ID=MS.gene49363.t1.exon3;Parent=MS.gene49363.t1 |
| chr1.1 | CDS | 53494183 | 53494227 | 53494183 | ID=cds.MS.gene49363.t1;Parent=MS.gene49363.t1 |
| chr1.1 | exon | 53494013 | 53494097 | 53494013 | ID=MS.gene49363.t1.exon4;Parent=MS.gene49363.t1 |
| chr1.1 | CDS | 53494013 | 53494097 | 53494013 | ID=cds.MS.gene49363.t1;Parent=MS.gene49363.t1 |
| Gene Sequence |
| Protein sequence |
