Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49644.t1 | XP_031491828.1 | 40.2 | 112 | 61 | 3 | 6 | 116 | 5 | 111 | 5.80E-15 | 90.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49644.t1 | Q8LGG0 | 37.5 | 112 | 64 | 2 | 6 | 116 | 5 | 111 | 2.2e-15 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49644.t1 | A0A1U8B9A3 | 40.2 | 112 | 61 | 3 | 6 | 116 | 5 | 111 | 5.4e-15 | 90.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049877 | MS.gene49644 | 0.810877 | 9.26E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene49644 | 0.823463 | 1.37E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene49644 | 0.810948 | 8.94E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene49644 | -0.821984 | 3.02E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49644.t1 | MTR_2g009390 | 36.937 | 111 | 64 | 3 | 5 | 114 | 4 | 109 | 1.07e-20 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49644.t1 | AT5G64350 | 37.168 | 113 | 65 | 2 | 5 | 116 | 4 | 111 | 4.20e-22 | 84.3 |
Find 34 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGTTTCGCACGTGTTCC+AGG | 0.355891 | 5.1:-28076100 | None:intergenic |
| TGGAACACGTGCGAAACCTT+TGG | 0.373830 | 5.1:+28076102 | MS.gene49644:CDS |
| CGAATTCATTGTGTCTGTTA+CGG | 0.389271 | 5.1:+28074879 | MS.gene49644:CDS |
| CTGTCATGCAGATGCGAGTT+GGG | 0.404005 | 5.1:+28076524 | MS.gene49644:CDS |
| CGTAACAGACACAATGAATT+CGG | 0.440767 | 5.1:-28074878 | None:intergenic |
| TGATTTAGCTTTAAGTGATG+TGG | 0.441583 | 5.1:+28077268 | MS.gene49644:CDS |
| AATCGAAGATGCCTCTCAAC+AGG | 0.443153 | 5.1:+28074802 | None:intergenic |
| GGGGAAGGTACTGTCATTAG+AGG | 0.444755 | 5.1:+28076136 | MS.gene49644:CDS |
| GTGATGTGGGCCACAATCCT+TGG | 0.463346 | 5.1:+28077282 | MS.gene49644:CDS |
| TCTCAACAGGCAGCAAACTC+TGG | 0.464067 | 5.1:+28074815 | MS.gene49644:CDS |
| AACGGTAATCTCGCTGCTGC+CGG | 0.478602 | 5.1:+28074846 | MS.gene49644:CDS |
| ATGCTGAACAACAACTTTGG+AGG | 0.480591 | 5.1:+28075942 | MS.gene49644:CDS |
| ACAATGCTGAACAACAACTT+TGG | 0.506884 | 5.1:+28075939 | MS.gene49644:CDS |
| AGGCAGCAAACTCTGGTGAA+TGG | 0.511533 | 5.1:+28074822 | MS.gene49644:CDS |
| GATTTAGCTTTAAGTGATGT+GGG | 0.513269 | 5.1:+28077269 | MS.gene49644:CDS |
| TCAAGTACCAAGTCAGTGTT+GGG | 0.514039 | 5.1:-28077314 | None:intergenic |
| ATCAAGTACCAAGTCAGTGT+TGG | 0.538271 | 5.1:-28077315 | None:intergenic |
| GTACTTGATGTTGAGCTCGT+GGG | 0.538543 | 5.1:+28077329 | MS.gene49644:CDS |
| CAAACTCTGGTGAATGGAAA+CGG | 0.546779 | 5.1:+28074828 | MS.gene49644:CDS |
| GGTACTTGATGTTGAGCTCG+TGG | 0.556080 | 5.1:+28077328 | MS.gene49644:CDS |
| TGGGGAACAAGCTCGTTTCG+AGG | 0.557634 | 5.1:+28076543 | MS.gene49644:CDS |
| TCCCCAATTCTGAAAACCAA+AGG | 0.557703 | 5.1:-28076118 | None:intergenic |
| TATACCGCCCAACACTGACT+TGG | 0.559133 | 5.1:+28077307 | MS.gene49644:CDS |
| ATGAATTCGGACATATTGAC+CGG | 0.575821 | 5.1:-28074865 | None:intergenic |
| AGAGTTTGCTGCCTGTTGAG+AGG | 0.580626 | 5.1:-28074813 | None:intergenic |
| GCGGTATATTCCAAGGATTG+TGG | 0.587100 | 5.1:-28077292 | None:intergenic |
| GTGTTGGGCGGTATATTCCA+AGG | 0.594265 | 5.1:-28077299 | None:intergenic |
| TACATTACATTACAGCTCAA+GGG | 0.597584 | 5.1:+28076066 | MS.gene49644:intron |
| TCAAGGGTAGGACATCCTCC+TGG | 0.609284 | 5.1:+28076082 | MS.gene49644:CDS |
| GCTGTCATGCAGATGCGAGT+TGG | 0.614371 | 5.1:+28076523 | MS.gene49644:CDS |
| TTACATTACAGCTCAAGGGT+AGG | 0.659169 | 5.1:+28076070 | MS.gene49644:intron |
| AGTACCAAGTCAGTGTTGGG+CGG | 0.691555 | 5.1:-28077311 | None:intergenic |
| GGTTTCGCACGTGTTCCAGG+AGG | 0.697090 | 5.1:-28076097 | None:intergenic |
| TGTCATGCAGATGCGAGTTG+GGG | 0.703241 | 5.1:+28076525 | MS.gene49644:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTATTTTAAGTAAA+GGG | - | chr5.1:28076762-28076781 | None:intergenic | 10.0% |
| !! | AATTAATCAAATCAAATGTA+AGG | - | chr5.1:28075882-28075901 | None:intergenic | 15.0% |
| !! | ACAAAATGAATAATAATAGT+TGG | - | chr5.1:28077229-28077248 | None:intergenic | 15.0% |
| !! | ATTAATAGTATATAAAGGAA+TGG | - | chr5.1:28076731-28076750 | None:intergenic | 15.0% |
| !! | ATTAATCAAATCAAATGTAA+GGG | - | chr5.1:28075881-28075900 | None:intergenic | 15.0% |
| !! | CAAAATGAATAATAATAGTT+GGG | - | chr5.1:28077228-28077247 | None:intergenic | 15.0% |
| !!! | AAAATAACTTTTTGTCATTT+GGG | + | chr5.1:28076769-28076788 | MS.gene49644:intron | 15.0% |
| !!! | AAAGCATTAATAGTATATAA+AGG | - | chr5.1:28076736-28076755 | None:intergenic | 15.0% |
| !!! | CAAAAAGTTATTTTAAGTAA+AGG | - | chr5.1:28076763-28076782 | None:intergenic | 15.0% |
| !!! | TAAAATAACTTTTTGTCATT+TGG | + | chr5.1:28076768-28076787 | MS.gene49644:intron | 15.0% |
| !!! | TTTTTTTTTTGTTACATGAT+TGG | + | chr5.1:28076265-28076284 | MS.gene49644:intron | 15.0% |
| !! | AAAGGAAATTTAATAAATCC+TGG | - | chr5.1:28077034-28077053 | None:intergenic | 20.0% |
| !! | AAGAAACAAATAAGCTAAAA+AGG | - | chr5.1:28076866-28076885 | None:intergenic | 20.0% |
| !! | AATTTAGTGATAAGTGTTTA+TGG | + | chr5.1:28076971-28076990 | MS.gene49644:intron | 20.0% |
| !! | TTGATAGATAGAAATAGAAA+GGG | - | chr5.1:28074921-28074940 | None:intergenic | 20.0% |
| !! | TTTATAATAAGCCTAAATCA+TGG | + | chr5.1:28076614-28076633 | MS.gene49644:intron | 20.0% |
| !!! | AAATAACTTTTTGTCATTTG+GGG | + | chr5.1:28076770-28076789 | MS.gene49644:intron | 20.0% |
| !!! | GCTATTTTTATTACAAAAGA+TGG | - | chr5.1:28076939-28076958 | None:intergenic | 20.0% |
| ! | AAATTGTGTACCTTTGAATT+AGG | + | chr5.1:28075426-28075445 | MS.gene49644:intron | 25.0% |
| ! | AACATAATTAACCGTCTAAT+GGG | + | chr5.1:28075538-28075557 | MS.gene49644:intron | 25.0% |
| ! | AATACAAATGCTCAATTGAT+CGG | - | chr5.1:28077138-28077157 | None:intergenic | 25.0% |
| ! | AATTTGTATCTAGTGATCTA+TGG | - | chr5.1:28075373-28075392 | None:intergenic | 25.0% |
| ! | ATGACGTTTAAATAGCTAAA+CGG | + | chr5.1:28075561-28075580 | MS.gene49644:intron | 25.0% |
| ! | TAAGTTAAAACAAACAGCAA+AGG | - | chr5.1:28077052-28077071 | None:intergenic | 25.0% |
| ! | TAGTATATAAAGGAATGGTA+AGG | - | chr5.1:28076726-28076745 | None:intergenic | 25.0% |
| ! | TGATAGATAGAAATAGAAAG+GGG | - | chr5.1:28074920-28074939 | None:intergenic | 25.0% |
| ! | TTAACTTAAACACACACATA+GGG | + | chr5.1:28077064-28077083 | MS.gene49644:intron | 25.0% |
| !! | AGCTTTTGCAAATTAATTCT+GGG | + | chr5.1:28075036-28075055 | MS.gene49644:intron | 25.0% |
| !! | ATTGTAAAACTGCTCTAAAT+TGG | - | chr5.1:28075211-28075230 | None:intergenic | 25.0% |
| !! | GTTGATAGATAGAAATAGAA+AGG | - | chr5.1:28074922-28074941 | None:intergenic | 25.0% |
| !! | TAGCTTTTGCAAATTAATTC+TGG | + | chr5.1:28075035-28075054 | MS.gene49644:intron | 25.0% |
| !! | TTTAACTTAAACACACACAT+AGG | + | chr5.1:28077063-28077082 | MS.gene49644:intron | 25.0% |
| !!! | AGGGTTGATAAATATAATGT+TGG | - | chr5.1:28075780-28075799 | None:intergenic | 25.0% |
| ATTGGGCTATTGTTACTAAA+TGG | - | chr5.1:28075641-28075660 | None:intergenic | 30.0% | |
| CAACATAATTAACCGTCTAA+TGG | + | chr5.1:28075537-28075556 | MS.gene49644:intron | 30.0% | |
| CATATCATCAGTAACAAAGA+AGG | + | chr5.1:28075397-28075416 | MS.gene49644:intron | 30.0% | |
| CGGTTAATTATGTTGAATGT+TGG | - | chr5.1:28075532-28075551 | None:intergenic | 30.0% | |
| GCTTATTATAAAGTGAGTGT+TGG | - | chr5.1:28076606-28076625 | None:intergenic | 30.0% | |
| TACATTACATTACAGCTCAA+GGG | + | chr5.1:28076066-28076085 | MS.gene49644:intron | 30.0% | |
| TATACTCTGTTCTATGTGTA+TGG | + | chr5.1:28076181-28076200 | MS.gene49644:intron | 30.0% | |
| TGTGAGTTGCAGTATTATAT+AGG | - | chr5.1:28076422-28076441 | None:intergenic | 30.0% | |
| TTACATTACATTACAGCTCA+AGG | + | chr5.1:28076065-28076084 | MS.gene49644:intron | 30.0% | |
| ! | AAATAAGCTAAAAAGGTGCA+TGG | - | chr5.1:28076859-28076878 | None:intergenic | 30.0% |
| ! | GTTGATGAATATGTGTGATT+GGG | - | chr5.1:28075658-28075677 | None:intergenic | 30.0% |
| !! | AGTTGATGAATATGTGTGAT+TGG | - | chr5.1:28075659-28075678 | None:intergenic | 30.0% |
| !! | GATTTAGCTTTAAGTGATGT+GGG | + | chr5.1:28077269-28077288 | MS.gene49644:CDS | 30.0% |
| !! | TGATTTAGCTTTAAGTGATG+TGG | + | chr5.1:28077268-28077287 | MS.gene49644:CDS | 30.0% |
| !! | TTTTGTTACATGATTGGTTG+TGG | + | chr5.1:28076271-28076290 | MS.gene49644:intron | 30.0% |
| !!! | AAACCTTTGGTTTTCAGAAT+TGG | + | chr5.1:28076115-28076134 | MS.gene49644:CDS | 30.0% |
| !!! | AACCTTTGGTTTTCAGAATT+GGG | + | chr5.1:28076116-28076135 | MS.gene49644:CDS | 30.0% |
| AATGCCACTAAACTTTCTAC+TGG | + | chr5.1:28075059-28075078 | MS.gene49644:intron | 35.0% | |
| ACAATGCTGAACAACAACTT+TGG | + | chr5.1:28075939-28075958 | MS.gene49644:CDS | 35.0% | |
| AGATCCAGTAGAAAGTTTAG+TGG | - | chr5.1:28075066-28075085 | None:intergenic | 35.0% | |
| ATACTGTTTGTGAGAGCTTA+TGG | + | chr5.1:28076815-28076834 | MS.gene49644:intron | 35.0% | |
| ATCAACCCTCAAAACTTAGT+GGG | + | chr5.1:28075791-28075810 | MS.gene49644:intron | 35.0% | |
| ATGAATTCGGACATATTGAC+CGG | - | chr5.1:28074868-28074887 | None:intergenic | 35.0% | |
| ATTTAGATAAGCCCAATGAG+AGG | - | chr5.1:28075600-28075619 | None:intergenic | 35.0% | |
| CACTCTCTTCATTCTCTTAT+TGG | - | chr5.1:28076688-28076707 | None:intergenic | 35.0% | |
| CCTTCATCAACCTAATTCAA+AGG | - | chr5.1:28075439-28075458 | None:intergenic | 35.0% | |
| CGAATTCATTGTGTCTGTTA+CGG | + | chr5.1:28074879-28074898 | MS.gene49644:CDS | 35.0% | |
| CGTAACAGACACAATGAATT+CGG | - | chr5.1:28074881-28074900 | None:intergenic | 35.0% | |
| GATAAACCTACCACTTTAAG+TGG | - | chr5.1:28076666-28076685 | None:intergenic | 35.0% | |
| GATCACAAGACAAAGGAAAT+TGG | - | chr5.1:28075300-28075319 | None:intergenic | 35.0% | |
| TATCAACCCTCAAAACTTAG+TGG | + | chr5.1:28075790-28075809 | MS.gene49644:intron | 35.0% | |
| TCTCATTGGGCTTATCTAAA+TGG | + | chr5.1:28075599-28075618 | MS.gene49644:intron | 35.0% | |
| TTAAACGTCATCCCATTAGA+CGG | - | chr5.1:28075552-28075571 | None:intergenic | 35.0% | |
| TTACGATTGTGATGATAACC+AGG | + | chr5.1:28075911-28075930 | MS.gene49644:intron | 35.0% | |
| TTTCAACTATGTGTGTGTGT+AGG | + | chr5.1:28076490-28076509 | MS.gene49644:intron | 35.0% | |
| ! | AATAAATCCTGGCCATGTTT+TGG | - | chr5.1:28077023-28077042 | None:intergenic | 35.0% |
| !! | CCTTTGAATTAGGTTGATGA+AGG | + | chr5.1:28075436-28075455 | MS.gene49644:intron | 35.0% |
| !!! | ACCTTTGGTTTTCAGAATTG+GGG | + | chr5.1:28076117-28076136 | MS.gene49644:CDS | 35.0% |
| !!! | AGGGTTGATCTGTTTTTTTC+TGG | - | chr5.1:28075862-28075881 | None:intergenic | 35.0% |
| AACCACACAAATTCTGGTCA+TGG | - | chr5.1:28075258-28075277 | None:intergenic | 40.0% | |
| AACCATGACCAGAATTTGTG+TGG | + | chr5.1:28075253-28075272 | MS.gene49644:intron | 40.0% | |
| ACAAAGGAAATTGGTCGACT+CGG | - | chr5.1:28075291-28075310 | None:intergenic | 40.0% | |
| ACTTAAACACACACATAGGG+TGG | + | chr5.1:28077067-28077086 | MS.gene49644:intron | 40.0% | |
| ATCAAGTACCAAGTCAGTGT+TGG | - | chr5.1:28077318-28077337 | None:intergenic | 40.0% | |
| ATGCTGAACAACAACTTTGG+AGG | + | chr5.1:28075942-28075961 | MS.gene49644:CDS | 40.0% | |
| CAAACGTCTATGACTTGAGT+AGG | - | chr5.1:28077100-28077119 | None:intergenic | 40.0% | |
| CAAACTCTGGTGAATGGAAA+CGG | + | chr5.1:28074828-28074847 | MS.gene49644:CDS | 40.0% | |
| CACGTTCAAAGTCACATGAT+TGG | + | chr5.1:28076232-28076251 | MS.gene49644:intron | 40.0% | |
| GAACTCAACCACACAAATTC+TGG | - | chr5.1:28075264-28075283 | None:intergenic | 40.0% | |
| GGACGAACAACTCAATTAAG+TGG | - | chr5.1:28077002-28077021 | None:intergenic | 40.0% | |
| GGATCTATAAAGCTAGTGCT+AGG | + | chr5.1:28075080-28075099 | MS.gene49644:intron | 40.0% | |
| GGTGAAAACCTAGAGTTAGA+CGG | - | chr5.1:28075511-28075530 | None:intergenic | 40.0% | |
| GTTACTAAATGGACCGTGAT+GGG | - | chr5.1:28075630-28075649 | None:intergenic | 40.0% | |
| GTTATCCCTCTCATAGTTGT+CGG | - | chr5.1:28075478-28075497 | None:intergenic | 40.0% | |
| TACCACAGATCACAAGACAA+AGG | - | chr5.1:28075307-28075326 | None:intergenic | 40.0% | |
| TCAAGTACCAAGTCAGTGTT+GGG | - | chr5.1:28077317-28077336 | None:intergenic | 40.0% | |
| TGAGTTGTTCGTCCAAAACA+TGG | + | chr5.1:28077008-28077027 | MS.gene49644:intron | 40.0% | |
| TGTGAGACACACCATGATTT+AGG | - | chr5.1:28076628-28076647 | None:intergenic | 40.0% | |
| TGTTACTAAATGGACCGTGA+TGG | - | chr5.1:28075631-28075650 | None:intergenic | 40.0% | |
| TTAAATAGCTAAACGGCCGA+GGG | + | chr5.1:28075568-28075587 | MS.gene49644:intron | 40.0% | |
| TTACATTACAGCTCAAGGGT+AGG | + | chr5.1:28076070-28076089 | MS.gene49644:intron | 40.0% | |
| TTCCTTTGTCTTGTGATCTG+TGG | + | chr5.1:28075302-28075321 | MS.gene49644:intron | 40.0% | |
| TTGTGATCTGTGGTAAAGTG+TGG | + | chr5.1:28075312-28075331 | MS.gene49644:intron | 40.0% | |
| TTTAAATAGCTAAACGGCCG+AGG | + | chr5.1:28075567-28075586 | MS.gene49644:intron | 40.0% | |
| ! | CAAAGTCACATGATTGGTTG+TGG | + | chr5.1:28076238-28076257 | MS.gene49644:intron | 40.0% |
| ! | CAACAACTTTGGAGGTTACT+TGG | + | chr5.1:28075950-28075969 | MS.gene49644:intron | 40.0% |
| ! | GAAATGGGTTCCACTTAAAG+TGG | + | chr5.1:28076653-28076672 | MS.gene49644:intron | 40.0% |
| ! | GTGTCTCACACTTTGGAAAT+GGG | + | chr5.1:28076638-28076657 | MS.gene49644:intron | 40.0% |
| ! | TCCCCAATTCTGAAAACCAA+AGG | - | chr5.1:28076121-28076140 | None:intergenic | 40.0% |
| ! | TGTGTCTCACACTTTGGAAA+TGG | + | chr5.1:28076637-28076656 | MS.gene49644:intron | 40.0% |
| !! | ACACACCCACTAAGTTTTGA+GGG | - | chr5.1:28075799-28075818 | None:intergenic | 40.0% |
| !! | TTGGTTTTCAGAATTGGGGA+AGG | + | chr5.1:28076121-28076140 | MS.gene49644:CDS | 40.0% |
| ACAACTCCGACAACTATGAG+AGG | + | chr5.1:28075469-28075488 | MS.gene49644:intron | 45.0% | |
| ACCTAGAGTTAGACGGAATG+AGG | - | chr5.1:28075504-28075523 | None:intergenic | 45.0% | |
| CAACTCCGACAACTATGAGA+GGG | + | chr5.1:28075470-28075489 | MS.gene49644:intron | 45.0% | |
| CCTAGAGTTAGACGGAATGA+GGG | - | chr5.1:28075503-28075522 | None:intergenic | 45.0% | |
| CTAAATGGTCCAACCCATCA+CGG | + | chr5.1:28075614-28075633 | MS.gene49644:intron | 45.0% | |
| GCGGTATATTCCAAGGATTG+TGG | - | chr5.1:28077295-28077314 | None:intergenic | 45.0% | |
| GTACTTGATGTTGAGCTCGT+GGG | + | chr5.1:28077329-28077348 | MS.gene49644:CDS | 45.0% | |
| TCATGGTGTGTCTCACACTT+TGG | + | chr5.1:28076631-28076650 | MS.gene49644:intron | 45.0% | |
| TGGGTTCCACTTAAAGTGGT+AGG | + | chr5.1:28076657-28076676 | MS.gene49644:intron | 45.0% | |
| ! | CACACACCCACTAAGTTTTG+AGG | - | chr5.1:28075800-28075819 | None:intergenic | 45.0% |
| ! | GTTGAGCTCGTGGGTATTTT+TGG | + | chr5.1:28077338-28077357 | MS.gene49644:CDS | 45.0% |
| !! | AAAAAATAATAAAAAATAGA+AGG | - | chr5.1:28075992-28076011 | None:intergenic | 5.0% |
| !! | ATTATTTAATTAATCAATTA+TGG | - | chr5.1:28075753-28075772 | None:intergenic | 5.0% |
| !! | TAATCTTATAATATAAATTA+TGG | - | chr5.1:28075704-28075723 | None:intergenic | 5.0% |
| AAAGGTTTCGCACGTGTTCC+AGG | - | chr5.1:28076103-28076122 | None:intergenic | 50.0% | |
| AGGCAGCAAACTCTGGTGAA+TGG | + | chr5.1:28074822-28074841 | MS.gene49644:CDS | 50.0% | |
| CCCTCATTCCGTCTAACTCT+AGG | + | chr5.1:28075500-28075519 | MS.gene49644:intron | 50.0% | |
| CTGTCATGCAGATGCGAGTT+GGG | + | chr5.1:28076524-28076543 | MS.gene49644:CDS | 50.0% | |
| GGTACTTGATGTTGAGCTCG+TGG | + | chr5.1:28077328-28077347 | MS.gene49644:CDS | 50.0% | |
| GTGTTGGGCGGTATATTCCA+AGG | - | chr5.1:28077302-28077321 | None:intergenic | 50.0% | |
| TCTCAACAGGCAGCAAACTC+TGG | + | chr5.1:28074815-28074834 | MS.gene49644:CDS | 50.0% | |
| TGGAACACGTGCGAAACCTT+TGG | + | chr5.1:28076102-28076121 | MS.gene49644:CDS | 50.0% | |
| TGTCATGCAGATGCGAGTTG+GGG | + | chr5.1:28076525-28076544 | MS.gene49644:CDS | 50.0% | |
| TGTTCAGCATTGTCAGCTCC+TGG | - | chr5.1:28075932-28075951 | None:intergenic | 50.0% | |
| TGTTCGTCCAAAACATGGCC+AGG | + | chr5.1:28077013-28077032 | MS.gene49644:intron | 50.0% | |
| ! | AGTACCAAGTCAGTGTTGGG+CGG | - | chr5.1:28077314-28077333 | None:intergenic | 50.0% |
| ! | TATACCGCCCAACACTGACT+TGG | + | chr5.1:28077307-28077326 | MS.gene49644:CDS | 50.0% |
| !! | AGAGTTTGCTGCCTGTTGAG+AGG | - | chr5.1:28074816-28074835 | None:intergenic | 50.0% |
| !! | CTAAATGGACCGTGATGGGT+TGG | - | chr5.1:28075626-28075645 | None:intergenic | 50.0% |
| !! | GGGGAAGGTACTGTCATTAG+AGG | + | chr5.1:28076136-28076155 | MS.gene49644:CDS | 50.0% |
| AACGGTAATCTCGCTGCTGC+CGG | + | chr5.1:28074846-28074865 | MS.gene49644:CDS | 55.0% | |
| GCTGTCATGCAGATGCGAGT+TGG | + | chr5.1:28076523-28076542 | MS.gene49644:CDS | 55.0% | |
| GTGATGTGGGCCACAATCCT+TGG | + | chr5.1:28077282-28077301 | MS.gene49644:CDS | 55.0% | |
| TCAAGGGTAGGACATCCTCC+TGG | + | chr5.1:28076082-28076101 | MS.gene49644:CDS | 55.0% | |
| TGGGGAACAAGCTCGTTTCG+AGG | + | chr5.1:28076543-28076562 | MS.gene49644:CDS | 55.0% | |
| ATAGCTAAACGGCCGAGGGC+AGG | + | chr5.1:28075572-28075591 | MS.gene49644:intron | 60.0% | |
| CAATGAGAGGTCCCTGCCCT+CGG | - | chr5.1:28075587-28075606 | None:intergenic | 60.0% | |
| GAGGGCAGGGACCTCTCATT+GGG | + | chr5.1:28075586-28075605 | MS.gene49644:intron | 60.0% | |
| GGTTTCGCACGTGTTCCAGG+AGG | - | chr5.1:28076100-28076119 | None:intergenic | 60.0% | |
| TAGCTAAACGGCCGAGGGCA+GGG | + | chr5.1:28075573-28075592 | MS.gene49644:intron | 60.0% | |
| CGAGGGCAGGGACCTCTCAT+TGG | + | chr5.1:28075585-28075604 | MS.gene49644:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28074810 | 28077373 | 28074810 | ID=MS.gene49644 |
| chr5.1 | mRNA | 28074810 | 28077373 | 28074810 | ID=MS.gene49644.t1;Parent=MS.gene49644 |
| chr5.1 | exon | 28074810 | 28074900 | 28074810 | ID=MS.gene49644.t1.exon1;Parent=MS.gene49644.t1 |
| chr5.1 | CDS | 28074810 | 28074900 | 28074810 | ID=cds.MS.gene49644.t1;Parent=MS.gene49644.t1 |
| chr5.1 | exon | 28075933 | 28075963 | 28075933 | ID=MS.gene49644.t1.exon2;Parent=MS.gene49644.t1 |
| chr5.1 | CDS | 28075933 | 28075963 | 28075933 | ID=cds.MS.gene49644.t1;Parent=MS.gene49644.t1 |
| chr5.1 | exon | 28076081 | 28076157 | 28076081 | ID=MS.gene49644.t1.exon3;Parent=MS.gene49644.t1 |
| chr5.1 | CDS | 28076081 | 28076157 | 28076081 | ID=cds.MS.gene49644.t1;Parent=MS.gene49644.t1 |
| chr5.1 | exon | 28076512 | 28076564 | 28076512 | ID=MS.gene49644.t1.exon4;Parent=MS.gene49644.t1 |
| chr5.1 | CDS | 28076512 | 28076564 | 28076512 | ID=cds.MS.gene49644.t1;Parent=MS.gene49644.t1 |
| chr5.1 | exon | 28077260 | 28077373 | 28077260 | ID=MS.gene49644.t1.exon5;Parent=MS.gene49644.t1 |
| chr5.1 | CDS | 28077260 | 28077373 | 28077260 | ID=cds.MS.gene49644.t1;Parent=MS.gene49644.t1 |
| Gene Sequence |
| Protein sequence |
