Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49652.t1 | XP_031491828.1 | 40.2 | 112 | 61 | 3 | 6 | 116 | 5 | 111 | 5.80E-15 | 90.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49652.t1 | Q8LGG0 | 37.5 | 112 | 64 | 2 | 6 | 116 | 5 | 111 | 2.2e-15 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49652.t1 | A0A1U8B9A3 | 40.2 | 112 | 61 | 3 | 6 | 116 | 5 | 111 | 5.4e-15 | 90.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049877 | MS.gene49652 | 0.809928 | 1.48E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene49652 | 0.803893 | 2.81E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene49652 | -0.814042 | 1.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49652.t1 | MTR_2g009390 | 36.937 | 111 | 64 | 3 | 5 | 114 | 4 | 109 | 1.07e-20 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49652.t1 | AT5G64350 | 37.168 | 113 | 65 | 2 | 5 | 116 | 4 | 111 | 4.20e-22 | 84.3 |
Find 34 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGTTTCGCACGTGTTCC+AGG | 0.355891 | 5.1:-27970503 | None:intergenic |
| TGGAACACGTGCGAAACCTT+TGG | 0.373830 | 5.1:+27970505 | MS.gene49652:CDS |
| CGAATTCATTGTGTCTGTTA+CGG | 0.389271 | 5.1:+27969282 | MS.gene49652:CDS |
| CTGTCATGCAGATGCGAGTT+GGG | 0.404005 | 5.1:+27970927 | MS.gene49652:CDS |
| CGTAACAGACACAATGAATT+CGG | 0.440767 | 5.1:-27969281 | None:intergenic |
| TGATTTAGCTTTAAGTGATG+TGG | 0.441583 | 5.1:+27972033 | MS.gene49652:CDS |
| AATCGAAGATGCCTCTCAAC+AGG | 0.443153 | 5.1:+27969205 | None:intergenic |
| GGGGAAGGTACTGTCATTAG+AGG | 0.444755 | 5.1:+27970539 | MS.gene49652:CDS |
| GTGATGTGGGCCACAATCCT+TGG | 0.463346 | 5.1:+27972047 | MS.gene49652:CDS |
| TCTCAACAGGCAGCAAACTC+TGG | 0.464067 | 5.1:+27969218 | MS.gene49652:CDS |
| AACGGTAATCTCGCTGCTGC+CGG | 0.478602 | 5.1:+27969249 | MS.gene49652:CDS |
| ATGCTGAACAACAACTTTGG+AGG | 0.480591 | 5.1:+27970345 | MS.gene49652:CDS |
| ACAATGCTGAACAACAACTT+TGG | 0.506884 | 5.1:+27970342 | MS.gene49652:CDS |
| AGGCAGCAAACTCTGGTGAA+TGG | 0.511533 | 5.1:+27969225 | MS.gene49652:CDS |
| GATTTAGCTTTAAGTGATGT+GGG | 0.513269 | 5.1:+27972034 | MS.gene49652:CDS |
| TCAAGTACCAAGTCAGTGTT+GGG | 0.514039 | 5.1:-27972079 | None:intergenic |
| ATCAAGTACCAAGTCAGTGT+TGG | 0.538271 | 5.1:-27972080 | None:intergenic |
| GTACTTGATGTTGAGCTCGT+GGG | 0.538543 | 5.1:+27972094 | MS.gene49652:CDS |
| CAAACTCTGGTGAATGGAAA+CGG | 0.546779 | 5.1:+27969231 | MS.gene49652:CDS |
| GGTACTTGATGTTGAGCTCG+TGG | 0.556080 | 5.1:+27972093 | MS.gene49652:CDS |
| TGGGGAACAAGCTCGTTTCG+AGG | 0.557634 | 5.1:+27970946 | MS.gene49652:CDS |
| TCCCCAATTCTGAAAACCAA+AGG | 0.557703 | 5.1:-27970521 | None:intergenic |
| TATACCGCCCAACACTGACT+TGG | 0.559133 | 5.1:+27972072 | MS.gene49652:CDS |
| ATGAATTCGGACATATTGAC+CGG | 0.575821 | 5.1:-27969268 | None:intergenic |
| AGAGTTTGCTGCCTGTTGAG+AGG | 0.580626 | 5.1:-27969216 | None:intergenic |
| GCGGTATATTCCAAGGATTG+TGG | 0.587100 | 5.1:-27972057 | None:intergenic |
| GTGTTGGGCGGTATATTCCA+AGG | 0.594265 | 5.1:-27972064 | None:intergenic |
| TACATTACATTACAGCTCAA+GGG | 0.597584 | 5.1:+27970469 | MS.gene49652:intron |
| TCAAGGGTAGGACATCCTCC+TGG | 0.609284 | 5.1:+27970485 | MS.gene49652:CDS |
| GCTGTCATGCAGATGCGAGT+TGG | 0.614371 | 5.1:+27970926 | MS.gene49652:CDS |
| TTACATTACAGCTCAAGGGT+AGG | 0.659169 | 5.1:+27970473 | MS.gene49652:intron |
| AGTACCAAGTCAGTGTTGGG+CGG | 0.691555 | 5.1:-27972076 | None:intergenic |
| GGTTTCGCACGTGTTCCAGG+AGG | 0.697090 | 5.1:-27970500 | None:intergenic |
| TGTCATGCAGATGCGAGTTG+GGG | 0.703241 | 5.1:+27970928 | MS.gene49652:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTATTTTAAGTAAA+GGG | - | chr5.1:27971165-27971184 | None:intergenic | 10.0% |
| !!! | ATAAAATTTGCAAATTTTAA+AGG | + | chr5.1:27971580-27971599 | MS.gene49652:intron | 10.0% |
| !!! | CTATTAAATATGTTTAAAAT+TGG | - | chr5.1:27971957-27971976 | None:intergenic | 10.0% |
| !! | AATTAATCAAATCAAATGTA+AGG | - | chr5.1:27970285-27970304 | None:intergenic | 15.0% |
| !! | ATTAATAGTATATAAAGGAA+TGG | - | chr5.1:27971134-27971153 | None:intergenic | 15.0% |
| !! | ATTAATCAAATCAAATGTAA+GGG | - | chr5.1:27970284-27970303 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr5.1:27971793-27971812 | MS.gene49652:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr5.1:27971812-27971793 | None:intergenic | 15.0% |
| !! | TAACAAAATGAATAATAGTT+GGG | - | chr5.1:27971996-27972015 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr5.1:27971792-27971811 | MS.gene49652:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr5.1:27971811-27971792 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+CGG | + | chr5.1:27971792-27971811 | MS.gene49652:intron | 15.0% |
| !! | TTAACAAAATGAATAATAGT+TGG | - | chr5.1:27971997-27972016 | None:intergenic | 15.0% |
| !!! | AAAATAACTTTTTGTCATTT+GGG | + | chr5.1:27971172-27971191 | MS.gene49652:intron | 15.0% |
| !!! | AAAGCATTAATAGTATATAA+AGG | - | chr5.1:27971139-27971158 | None:intergenic | 15.0% |
| !!! | CAAAAAGTTATTTTAAGTAA+AGG | - | chr5.1:27971166-27971185 | None:intergenic | 15.0% |
| !!! | TAAAATAACTTTTTGTCATT+TGG | + | chr5.1:27971171-27971190 | MS.gene49652:intron | 15.0% |
| !!! | TTTTTTTTTTGTTACATGAT+TGG | + | chr5.1:27970668-27970687 | MS.gene49652:intron | 15.0% |
| !! | AAAGGAAATTTAATAAATCC+TGG | - | chr5.1:27971438-27971457 | None:intergenic | 20.0% |
| !! | AAGAAACAAATAAGCTAAAA+AGG | - | chr5.1:27971269-27971288 | None:intergenic | 20.0% |
| !! | AATTTAGTGATAAGTGTTTA+TGG | + | chr5.1:27971375-27971394 | MS.gene49652:intron | 20.0% |
| !! | GAAAACTAAAATAAACATAC+GGG | + | chr5.1:27971913-27971932 | MS.gene49652:intron | 20.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | + | chr5.1:27971853-27971872 | MS.gene49652:intron | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | + | chr5.1:27971852-27971871 | MS.gene49652:intron | 20.0% |
| !! | TTGAAACTTTCAAAACATAA+GGG | + | chr5.1:27971882-27971901 | MS.gene49652:intron | 20.0% |
| !! | TTGATAGATAGAAATAGAAA+GGG | - | chr5.1:27969324-27969343 | None:intergenic | 20.0% |
| !! | TTTATAATAAGCCTAAATCA+TGG | + | chr5.1:27971017-27971036 | MS.gene49652:intron | 20.0% |
| !!! | AAATAACTTTTTGTCATTTG+GGG | + | chr5.1:27971173-27971192 | MS.gene49652:intron | 20.0% |
| !!! | GCTATTTTTATTACAAAAGA+TGG | - | chr5.1:27971343-27971362 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | + | chr5.1:27971628-27971647 | MS.gene49652:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr5.1:27971628-27971647 | MS.gene49652:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr5.1:27971647-27971628 | None:intergenic | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | - | chr5.1:27971684-27971703 | None:intergenic | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | - | chr5.1:27971685-27971704 | None:intergenic | 20.0% |
| ! | AAATTGTGTACCTTTGAATT+AGG | + | chr5.1:27969829-27969848 | MS.gene49652:intron | 25.0% |
| ! | AACATAATTAACCGTCTAAT+GGG | + | chr5.1:27969941-27969960 | MS.gene49652:intron | 25.0% |
| ! | AATACAAATGCTCAATTGAT+CGG | - | chr5.1:27971542-27971561 | None:intergenic | 25.0% |
| ! | AATTTGTATCTAGTGATCTA+TGG | - | chr5.1:27969776-27969795 | None:intergenic | 25.0% |
| ! | ATGACGTTTAAATAGCTAAA+CGG | + | chr5.1:27969964-27969983 | MS.gene49652:intron | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | + | chr5.1:27971881-27971900 | MS.gene49652:intron | 25.0% |
| ! | TAAGTTAAAACAAACAGCAA+AGG | - | chr5.1:27971456-27971475 | None:intergenic | 25.0% |
| ! | TAGTATATAAAGGAATGGTA+AGG | - | chr5.1:27971129-27971148 | None:intergenic | 25.0% |
| ! | TGATAGATAGAAATAGAAAG+GGG | - | chr5.1:27969323-27969342 | None:intergenic | 25.0% |
| ! | TTAACTTAAACACACACATA+GGG | + | chr5.1:27971468-27971487 | MS.gene49652:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr5.1:27971822-27971841 | MS.gene49652:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr5.1:27971841-27971822 | None:intergenic | 25.0% |
| !! | AGCTTTTGCAAATTAATTCT+GGG | + | chr5.1:27969439-27969458 | MS.gene49652:intron | 25.0% |
| !! | ATTGTAAAACTGCTCTAAAT+TGG | - | chr5.1:27969614-27969633 | None:intergenic | 25.0% |
| !! | GTTGATAGATAGAAATAGAA+AGG | - | chr5.1:27969325-27969344 | None:intergenic | 25.0% |
| !! | TAGCTTTTGCAAATTAATTC+TGG | + | chr5.1:27969438-27969457 | MS.gene49652:intron | 25.0% |
| !! | TTTAACTTAAACACACACAT+AGG | + | chr5.1:27971467-27971486 | MS.gene49652:intron | 25.0% |
| !!! | AGGGTTGATAAATATAATGT+TGG | - | chr5.1:27970183-27970202 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | - | chr5.1:27971880-27971899 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | + | chr5.1:27971687-27971706 | MS.gene49652:intron | 25.0% |
| ATTGGGCTATTGTTACTAAA+TGG | - | chr5.1:27970044-27970063 | None:intergenic | 30.0% | |
| CAACATAATTAACCGTCTAA+TGG | + | chr5.1:27969940-27969959 | MS.gene49652:intron | 30.0% | |
| CATATCATCAGTAACAAAGA+AGG | + | chr5.1:27969800-27969819 | MS.gene49652:intron | 30.0% | |
| CGGTTAATTATGTTGAATGT+TGG | - | chr5.1:27969935-27969954 | None:intergenic | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr5.1:27971821-27971840 | MS.gene49652:intron | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr5.1:27971840-27971821 | None:intergenic | 30.0% | |
| GCTTATTATAAAGTGAGTGT+TGG | - | chr5.1:27971009-27971028 | None:intergenic | 30.0% | |
| TAAAGGCTTAATTGCATGTT+TGG | + | chr5.1:27971597-27971616 | MS.gene49652:intron | 30.0% | |
| TACATTACATTACAGCTCAA+GGG | + | chr5.1:27970469-27970488 | MS.gene49652:intron | 30.0% | |
| TATACTCTGTTCTATGTGTA+TGG | + | chr5.1:27970584-27970603 | MS.gene49652:intron | 30.0% | |
| TGTGAGTTGCAGTATTATAT+AGG | - | chr5.1:27970825-27970844 | None:intergenic | 30.0% | |
| TTACATTACATTACAGCTCA+AGG | + | chr5.1:27970468-27970487 | MS.gene49652:intron | 30.0% | |
| ! | AAATAAGCTAAAAAGGTGCA+TGG | - | chr5.1:27971262-27971281 | None:intergenic | 30.0% |
| ! | AATTGGCTTAATTGCATGTT+TGG | - | chr5.1:27971940-27971959 | None:intergenic | 30.0% |
| ! | GTTGATGAATATGTGTGATT+GGG | - | chr5.1:27970061-27970080 | None:intergenic | 30.0% |
| !! | AGTTGATGAATATGTGTGAT+TGG | - | chr5.1:27970062-27970081 | None:intergenic | 30.0% |
| !! | GATTTAGCTTTAAGTGATGT+GGG | + | chr5.1:27972034-27972053 | MS.gene49652:CDS | 30.0% |
| !! | TGATTTAGCTTTAAGTGATG+TGG | + | chr5.1:27972033-27972052 | MS.gene49652:CDS | 30.0% |
| !! | TTTTGTTACATGATTGGTTG+TGG | + | chr5.1:27970674-27970693 | MS.gene49652:intron | 30.0% |
| !!! | AAACCTTTGGTTTTCAGAAT+TGG | + | chr5.1:27970518-27970537 | MS.gene49652:CDS | 30.0% |
| !!! | AACCTTTGGTTTTCAGAATT+GGG | + | chr5.1:27970519-27970538 | MS.gene49652:CDS | 30.0% |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr5.1:27971657-27971676 | MS.gene49652:intron | 30.0% |
| AATGCCACTAAACTTTCTAC+TGG | + | chr5.1:27969462-27969481 | MS.gene49652:intron | 35.0% | |
| ACAATGCTGAACAACAACTT+TGG | + | chr5.1:27970342-27970361 | MS.gene49652:CDS | 35.0% | |
| AGATCCAGTAGAAAGTTTAG+TGG | - | chr5.1:27969469-27969488 | None:intergenic | 35.0% | |
| ATACTGTTTGTGAGAGCTTA+TGG | + | chr5.1:27971218-27971237 | MS.gene49652:intron | 35.0% | |
| ATCAACCCTCAAAACTTAGT+GGG | + | chr5.1:27970194-27970213 | MS.gene49652:intron | 35.0% | |
| ATGAATTCGGACATATTGAC+CGG | - | chr5.1:27969271-27969290 | None:intergenic | 35.0% | |
| ATTTAGATAAGCCCAATGAG+AGG | - | chr5.1:27970003-27970022 | None:intergenic | 35.0% | |
| CAAATGTCTATGACTTGAGT+AGG | - | chr5.1:27971504-27971523 | None:intergenic | 35.0% | |
| CACTCTCTTCATTCTCTTAT+TGG | - | chr5.1:27971091-27971110 | None:intergenic | 35.0% | |
| CCTTCATCAACCTAATTCAA+AGG | - | chr5.1:27969842-27969861 | None:intergenic | 35.0% | |
| CGAATTCATTGTGTCTGTTA+CGG | + | chr5.1:27969282-27969301 | MS.gene49652:CDS | 35.0% | |
| CGTAACAGACACAATGAATT+CGG | - | chr5.1:27969284-27969303 | None:intergenic | 35.0% | |
| GATAAACCTACCACTTTAAG+TGG | - | chr5.1:27971069-27971088 | None:intergenic | 35.0% | |
| GATCACAAGACAAAGGAAAT+TGG | - | chr5.1:27969703-27969722 | None:intergenic | 35.0% | |
| TATCAACCCTCAAAACTTAG+TGG | + | chr5.1:27970193-27970212 | MS.gene49652:intron | 35.0% | |
| TCTCATTGGGCTTATCTAAA+TGG | + | chr5.1:27970002-27970021 | MS.gene49652:intron | 35.0% | |
| TTAAACGTCATCCCATTAGA+CGG | - | chr5.1:27969955-27969974 | None:intergenic | 35.0% | |
| TTACGATTGTGATGATAACC+AGG | + | chr5.1:27970314-27970333 | MS.gene49652:intron | 35.0% | |
| TTTCAACTATGTGTGTGTGT+AGG | + | chr5.1:27970893-27970912 | MS.gene49652:intron | 35.0% | |
| ! | AATAAATCCTGGCCATGTTT+TGG | - | chr5.1:27971427-27971446 | None:intergenic | 35.0% |
| !! | CCTTTGAATTAGGTTGATGA+AGG | + | chr5.1:27969839-27969858 | MS.gene49652:intron | 35.0% |
| !!! | ACCTTTGGTTTTCAGAATTG+GGG | + | chr5.1:27970520-27970539 | MS.gene49652:CDS | 35.0% |
| !!! | AGGGTTGATCTGTTTTTTTC+TGG | - | chr5.1:27970265-27970284 | None:intergenic | 35.0% |
| AACCACACAAATTCTGGTCA+TGG | - | chr5.1:27969661-27969680 | None:intergenic | 40.0% | |
| AACCATGACCAGAATTTGTG+TGG | + | chr5.1:27969656-27969675 | MS.gene49652:intron | 40.0% | |
| ACAAAGGAAATTGGTCGACT+CGG | - | chr5.1:27969694-27969713 | None:intergenic | 40.0% | |
| ACTTAAACACACACATAGGG+TGG | + | chr5.1:27971471-27971490 | MS.gene49652:intron | 40.0% | |
| ATCAAGTACCAAGTCAGTGT+TGG | - | chr5.1:27972083-27972102 | None:intergenic | 40.0% | |
| ATGCTGAACAACAACTTTGG+AGG | + | chr5.1:27970345-27970364 | MS.gene49652:CDS | 40.0% | |
| CAAACTCTGGTGAATGGAAA+CGG | + | chr5.1:27969231-27969250 | MS.gene49652:CDS | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | + | chr5.1:27971762-27971781 | MS.gene49652:intron | 40.0% | |
| CACGTTCAAAGTCACATGAT+TGG | + | chr5.1:27970635-27970654 | MS.gene49652:intron | 40.0% | |
| GAACTCAACCACACAAATTC+TGG | - | chr5.1:27969667-27969686 | None:intergenic | 40.0% | |
| GGACGAACAACTCAATTAAG+TGG | - | chr5.1:27971406-27971425 | None:intergenic | 40.0% | |
| GGATCTATAAAGCTAGTGCT+AGG | + | chr5.1:27969483-27969502 | MS.gene49652:intron | 40.0% | |
| GGTGAAAACCTAGAGTTAGA+CGG | - | chr5.1:27969914-27969933 | None:intergenic | 40.0% | |
| GTTACTAAATGGACCGTGAT+GGG | - | chr5.1:27970033-27970052 | None:intergenic | 40.0% | |
| GTTATCCCTCTCATAGTTGT+CGG | - | chr5.1:27969881-27969900 | None:intergenic | 40.0% | |
| TACCACAGATCACAAGACAA+AGG | - | chr5.1:27969710-27969729 | None:intergenic | 40.0% | |
| TCAAGTACCAAGTCAGTGTT+GGG | - | chr5.1:27972082-27972101 | None:intergenic | 40.0% | |
| TCAAGTCGGTCCAAAACATA+AGG | + | chr5.1:27971761-27971780 | MS.gene49652:intron | 40.0% | |
| TGAGTTGTTCGTCCAAAACA+TGG | + | chr5.1:27971412-27971431 | MS.gene49652:intron | 40.0% | |
| TGTGAGACACACCATGATTT+AGG | - | chr5.1:27971031-27971050 | None:intergenic | 40.0% | |
| TGTTACTAAATGGACCGTGA+TGG | - | chr5.1:27970034-27970053 | None:intergenic | 40.0% | |
| TTAAATAGCTAAACGGCCGA+GGG | + | chr5.1:27969971-27969990 | MS.gene49652:intron | 40.0% | |
| TTACATTACAGCTCAAGGGT+AGG | + | chr5.1:27970473-27970492 | MS.gene49652:intron | 40.0% | |
| TTCCTTTGTCTTGTGATCTG+TGG | + | chr5.1:27969705-27969724 | MS.gene49652:intron | 40.0% | |
| TTGTGATCTGTGGTAAAGTG+TGG | + | chr5.1:27969715-27969734 | MS.gene49652:intron | 40.0% | |
| TTTAAATAGCTAAACGGCCG+AGG | + | chr5.1:27969970-27969989 | MS.gene49652:intron | 40.0% | |
| ! | CAAAGTCACATGATTGGTTG+TGG | + | chr5.1:27970641-27970660 | MS.gene49652:intron | 40.0% |
| ! | CAACAACTTTGGAGGTTACT+TGG | + | chr5.1:27970353-27970372 | MS.gene49652:intron | 40.0% |
| ! | GAAATGGGTTCCACTTAAAG+TGG | + | chr5.1:27971056-27971075 | MS.gene49652:intron | 40.0% |
| ! | GTGTCTCACACTTTGGAAAT+GGG | + | chr5.1:27971041-27971060 | MS.gene49652:intron | 40.0% |
| ! | TCCCCAATTCTGAAAACCAA+AGG | - | chr5.1:27970524-27970543 | None:intergenic | 40.0% |
| ! | TGTGTCTCACACTTTGGAAA+TGG | + | chr5.1:27971040-27971059 | MS.gene49652:intron | 40.0% |
| !! | ACACACCCACTAAGTTTTGA+GGG | - | chr5.1:27970202-27970221 | None:intergenic | 40.0% |
| !! | TTGGTTTTCAGAATTGGGGA+AGG | + | chr5.1:27970524-27970543 | MS.gene49652:CDS | 40.0% |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | - | chr5.1:27971750-27971731 | None:intergenic | 40.0% |
| ACAACTCCGACAACTATGAG+AGG | + | chr5.1:27969872-27969891 | MS.gene49652:intron | 45.0% | |
| ACCTAGAGTTAGACGGAATG+AGG | - | chr5.1:27969907-27969926 | None:intergenic | 45.0% | |
| CAACTCCGACAACTATGAGA+GGG | + | chr5.1:27969873-27969892 | MS.gene49652:intron | 45.0% | |
| CCTAGAGTTAGACGGAATGA+GGG | - | chr5.1:27969906-27969925 | None:intergenic | 45.0% | |
| CTAAATGGTCCAACCCATCA+CGG | + | chr5.1:27970017-27970036 | MS.gene49652:intron | 45.0% | |
| GCGGTATATTCCAAGGATTG+TGG | - | chr5.1:27972060-27972079 | None:intergenic | 45.0% | |
| GTACTTGATGTTGAGCTCGT+GGG | + | chr5.1:27972094-27972113 | MS.gene49652:CDS | 45.0% | |
| TCATGGTGTGTCTCACACTT+TGG | + | chr5.1:27971034-27971053 | MS.gene49652:intron | 45.0% | |
| TGGGTTCCACTTAAAGTGGT+AGG | + | chr5.1:27971060-27971079 | MS.gene49652:intron | 45.0% | |
| ! | CACACACCCACTAAGTTTTG+AGG | - | chr5.1:27970203-27970222 | None:intergenic | 45.0% |
| ! | GTTGAGCTCGTGGGTATTTT+TGG | + | chr5.1:27972103-27972122 | MS.gene49652:CDS | 45.0% |
| !! | AAAAAATAATAAAAAATAGA+AGG | - | chr5.1:27970395-27970414 | None:intergenic | 5.0% |
| !! | ATTATTTAATTAATCAATTA+TGG | - | chr5.1:27970156-27970175 | None:intergenic | 5.0% |
| !! | TAATCTTATAATATAAATTA+TGG | - | chr5.1:27970107-27970126 | None:intergenic | 5.0% |
| AAAGGTTTCGCACGTGTTCC+AGG | - | chr5.1:27970506-27970525 | None:intergenic | 50.0% | |
| AGGCAGCAAACTCTGGTGAA+TGG | + | chr5.1:27969225-27969244 | MS.gene49652:CDS | 50.0% | |
| CCCTCATTCCGTCTAACTCT+AGG | + | chr5.1:27969903-27969922 | MS.gene49652:intron | 50.0% | |
| CTGTCATGCAGATGCGAGTT+GGG | + | chr5.1:27970927-27970946 | MS.gene49652:CDS | 50.0% | |
| GGTACTTGATGTTGAGCTCG+TGG | + | chr5.1:27972093-27972112 | MS.gene49652:CDS | 50.0% | |
| GTGTTGGGCGGTATATTCCA+AGG | - | chr5.1:27972067-27972086 | None:intergenic | 50.0% | |
| TCTCAACAGGCAGCAAACTC+TGG | + | chr5.1:27969218-27969237 | MS.gene49652:CDS | 50.0% | |
| TGGAACACGTGCGAAACCTT+TGG | + | chr5.1:27970505-27970524 | MS.gene49652:CDS | 50.0% | |
| TGTCATGCAGATGCGAGTTG+GGG | + | chr5.1:27970928-27970947 | MS.gene49652:CDS | 50.0% | |
| TGTTCAGCATTGTCAGCTCC+TGG | - | chr5.1:27970335-27970354 | None:intergenic | 50.0% | |
| TGTTCGTCCAAAACATGGCC+AGG | + | chr5.1:27971417-27971436 | MS.gene49652:intron | 50.0% | |
| ! | AGTACCAAGTCAGTGTTGGG+CGG | - | chr5.1:27972079-27972098 | None:intergenic | 50.0% |
| ! | TATACCGCCCAACACTGACT+TGG | + | chr5.1:27972072-27972091 | MS.gene49652:CDS | 50.0% |
| !! | AGAGTTTGCTGCCTGTTGAG+AGG | - | chr5.1:27969219-27969238 | None:intergenic | 50.0% |
| !! | CTAAATGGACCGTGATGGGT+TGG | - | chr5.1:27970029-27970048 | None:intergenic | 50.0% |
| !! | GGGGAAGGTACTGTCATTAG+AGG | + | chr5.1:27970539-27970558 | MS.gene49652:CDS | 50.0% |
| AACGGTAATCTCGCTGCTGC+CGG | + | chr5.1:27969249-27969268 | MS.gene49652:CDS | 55.0% | |
| GCTGTCATGCAGATGCGAGT+TGG | + | chr5.1:27970926-27970945 | MS.gene49652:CDS | 55.0% | |
| GTGATGTGGGCCACAATCCT+TGG | + | chr5.1:27972047-27972066 | MS.gene49652:CDS | 55.0% | |
| TCAAGGGTAGGACATCCTCC+TGG | + | chr5.1:27970485-27970504 | MS.gene49652:CDS | 55.0% | |
| TGGGGAACAAGCTCGTTTCG+AGG | + | chr5.1:27970946-27970965 | MS.gene49652:CDS | 55.0% | |
| ATAGCTAAACGGCCGAGGGC+AGG | + | chr5.1:27969975-27969994 | MS.gene49652:intron | 60.0% | |
| CAATGAGAGGTCCCTGCCCT+CGG | - | chr5.1:27969990-27970009 | None:intergenic | 60.0% | |
| GAGGGCAGGGACCTCTCATT+GGG | + | chr5.1:27969989-27970008 | MS.gene49652:intron | 60.0% | |
| GGTTTCGCACGTGTTCCAGG+AGG | - | chr5.1:27970503-27970522 | None:intergenic | 60.0% | |
| TAGCTAAACGGCCGAGGGCA+GGG | + | chr5.1:27969976-27969995 | MS.gene49652:intron | 60.0% | |
| CGAGGGCAGGGACCTCTCAT+TGG | + | chr5.1:27969988-27970007 | MS.gene49652:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 27969213 | 27972138 | 27969213 | ID=MS.gene49652 |
| chr5.1 | mRNA | 27969213 | 27972138 | 27969213 | ID=MS.gene49652.t1;Parent=MS.gene49652 |
| chr5.1 | exon | 27969213 | 27969303 | 27969213 | ID=MS.gene49652.t1.exon1;Parent=MS.gene49652.t1 |
| chr5.1 | CDS | 27969213 | 27969303 | 27969213 | ID=cds.MS.gene49652.t1;Parent=MS.gene49652.t1 |
| chr5.1 | exon | 27970336 | 27970366 | 27970336 | ID=MS.gene49652.t1.exon2;Parent=MS.gene49652.t1 |
| chr5.1 | CDS | 27970336 | 27970366 | 27970336 | ID=cds.MS.gene49652.t1;Parent=MS.gene49652.t1 |
| chr5.1 | exon | 27970484 | 27970560 | 27970484 | ID=MS.gene49652.t1.exon3;Parent=MS.gene49652.t1 |
| chr5.1 | CDS | 27970484 | 27970560 | 27970484 | ID=cds.MS.gene49652.t1;Parent=MS.gene49652.t1 |
| chr5.1 | exon | 27970915 | 27970967 | 27970915 | ID=MS.gene49652.t1.exon4;Parent=MS.gene49652.t1 |
| chr5.1 | CDS | 27970915 | 27970967 | 27970915 | ID=cds.MS.gene49652.t1;Parent=MS.gene49652.t1 |
| chr5.1 | exon | 27972025 | 27972138 | 27972025 | ID=MS.gene49652.t1.exon5;Parent=MS.gene49652.t1 |
| chr5.1 | CDS | 27972025 | 27972138 | 27972025 | ID=cds.MS.gene49652.t1;Parent=MS.gene49652.t1 |
| Gene Sequence |
| Protein sequence |
