Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49699.t1 | XP_024629576.1 | 97.9 | 234 | 5 | 0 | 1 | 234 | 124 | 357 | 7.50E-134 | 486.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49699.t1 | Q65XS5 | 78.8 | 236 | 48 | 1 | 1 | 234 | 154 | 389 | 1.4e-112 | 407.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49699.t1 | A0A396GRJ7 | 97.9 | 234 | 5 | 0 | 1 | 234 | 124 | 357 | 5.4e-134 | 486.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055356 | MS.gene49699 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene49699 | 0.819246 | 1.28E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49699.t1 | MTR_8g094180 | 95.816 | 239 | 5 | 1 | 1 | 234 | 124 | 362 | 3.75e-172 | 479 |
| MS.gene49699.t1 | MTR_8g094180 | 97.396 | 192 | 5 | 0 | 1 | 192 | 124 | 315 | 3.59e-140 | 397 |
| MS.gene49699.t1 | MTR_2g024120 | 55.600 | 250 | 108 | 3 | 1 | 250 | 131 | 377 | 2.21e-97 | 290 |
| MS.gene49699.t1 | MTR_2g037600 | 38.843 | 242 | 115 | 8 | 1 | 233 | 169 | 386 | 2.64e-43 | 151 |
| MS.gene49699.t1 | MTR_4g127550 | 37.344 | 241 | 119 | 8 | 1 | 233 | 171 | 387 | 3.45e-41 | 145 |
| MS.gene49699.t1 | MTR_1g016880 | 39.167 | 240 | 100 | 8 | 1 | 235 | 172 | 370 | 1.69e-39 | 140 |
| MS.gene49699.t1 | MTR_2g037620 | 37.344 | 241 | 119 | 5 | 1 | 233 | 161 | 377 | 2.05e-38 | 138 |
| MS.gene49699.t1 | MTR_1g110290 | 37.395 | 238 | 103 | 7 | 1 | 233 | 190 | 386 | 2.44e-36 | 133 |
| MS.gene49699.t1 | MTR_5g055480 | 36.596 | 235 | 104 | 7 | 1 | 231 | 188 | 381 | 1.02e-35 | 131 |
| MS.gene49699.t1 | MTR_1g009960 | 34.440 | 241 | 127 | 6 | 1 | 233 | 175 | 392 | 2.38e-35 | 130 |
| MS.gene49699.t1 | MTR_5g006930 | 36.170 | 235 | 106 | 8 | 1 | 231 | 183 | 377 | 7.72e-33 | 123 |
| MS.gene49699.t1 | MTR_2g005350 | 36.820 | 239 | 108 | 8 | 1 | 235 | 234 | 433 | 1.23e-32 | 123 |
| MS.gene49699.t1 | MTR_3g108740 | 33.607 | 244 | 125 | 7 | 1 | 233 | 156 | 373 | 1.61e-32 | 122 |
| MS.gene49699.t1 | MTR_6g083830 | 36.709 | 237 | 102 | 8 | 1 | 231 | 216 | 410 | 8.99e-32 | 121 |
| MS.gene49699.t1 | MTR_8g015500 | 35.021 | 237 | 111 | 6 | 1 | 233 | 209 | 406 | 1.53e-31 | 120 |
| MS.gene49699.t1 | MTR_1g009960 | 35.176 | 199 | 103 | 4 | 1 | 196 | 175 | 350 | 4.91e-30 | 115 |
| MS.gene49699.t1 | MTR_5g006920 | 36.017 | 236 | 105 | 9 | 1 | 231 | 218 | 412 | 6.39e-30 | 116 |
| MS.gene49699.t1 | MTR_3g104840 | 32.301 | 226 | 99 | 6 | 1 | 226 | 208 | 379 | 2.08e-26 | 106 |
| MS.gene49699.t1 | MTR_3g106930 | 30.342 | 234 | 125 | 7 | 4 | 231 | 165 | 366 | 2.00e-21 | 92.0 |
| MS.gene49699.t1 | MTR_1g031080 | 29.070 | 258 | 110 | 9 | 1 | 233 | 75 | 284 | 6.06e-19 | 84.3 |
| MS.gene49699.t1 | MTR_1g031060 | 28.750 | 240 | 107 | 9 | 14 | 233 | 159 | 354 | 5.60e-18 | 82.4 |
| MS.gene49699.t1 | MTR_2g087610 | 32.000 | 250 | 97 | 10 | 1 | 223 | 147 | 350 | 1.22e-17 | 81.6 |
| MS.gene49699.t1 | MTR_1g048320 | 27.731 | 238 | 109 | 10 | 14 | 233 | 144 | 336 | 5.41e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49699.t1 | AT5G14550 | 75.424 | 236 | 58 | 0 | 1 | 236 | 133 | 368 | 1.71e-135 | 386 |
| MS.gene49699.t1 | AT5G14550 | 76.190 | 231 | 55 | 0 | 1 | 231 | 133 | 363 | 1.65e-134 | 384 |
| MS.gene49699.t1 | AT5G14550 | 68.220 | 236 | 48 | 1 | 1 | 236 | 133 | 341 | 2.65e-114 | 332 |
| MS.gene49699.t1 | AT5G14550 | 70.000 | 190 | 44 | 1 | 1 | 190 | 133 | 309 | 1.07e-95 | 284 |
| MS.gene49699.t1 | AT1G62305 | 54.583 | 240 | 105 | 4 | 1 | 240 | 138 | 373 | 7.54e-87 | 263 |
| MS.gene49699.t1 | AT1G11940 | 53.448 | 232 | 105 | 2 | 1 | 232 | 143 | 371 | 2.15e-85 | 259 |
| MS.gene49699.t1 | AT1G62305 | 48.750 | 240 | 95 | 5 | 1 | 240 | 138 | 349 | 1.90e-69 | 218 |
| MS.gene49699.t1 | AT1G62305 | 60.714 | 140 | 52 | 3 | 1 | 140 | 138 | 274 | 4.69e-48 | 161 |
| MS.gene49699.t1 | AT5G57270 | 38.430 | 242 | 117 | 7 | 1 | 233 | 161 | 379 | 9.75e-41 | 144 |
| MS.gene49699.t1 | AT5G57270 | 38.430 | 242 | 117 | 7 | 1 | 233 | 161 | 379 | 9.75e-41 | 144 |
| MS.gene49699.t1 | AT5G57270 | 38.430 | 242 | 117 | 7 | 1 | 233 | 161 | 379 | 9.75e-41 | 144 |
| MS.gene49699.t1 | AT5G57270 | 38.430 | 242 | 117 | 7 | 1 | 233 | 161 | 379 | 9.75e-41 | 144 |
| MS.gene49699.t1 | AT5G57270 | 38.430 | 242 | 117 | 7 | 1 | 233 | 161 | 379 | 9.75e-41 | 144 |
| MS.gene49699.t1 | AT1G11940 | 60.185 | 108 | 43 | 0 | 1 | 108 | 143 | 250 | 4.80e-40 | 139 |
| MS.gene49699.t1 | AT4G31350 | 35.685 | 241 | 123 | 5 | 1 | 233 | 147 | 363 | 3.51e-39 | 140 |
| MS.gene49699.t1 | AT4G31350 | 35.685 | 241 | 123 | 5 | 1 | 233 | 152 | 368 | 3.59e-39 | 140 |
| MS.gene49699.t1 | AT4G31350 | 35.685 | 241 | 123 | 5 | 1 | 233 | 152 | 368 | 3.59e-39 | 140 |
| MS.gene49699.t1 | AT4G31350 | 35.685 | 241 | 123 | 5 | 1 | 233 | 152 | 368 | 3.59e-39 | 140 |
| MS.gene49699.t1 | AT1G73810 | 39.831 | 236 | 97 | 9 | 1 | 231 | 214 | 409 | 1.41e-37 | 136 |
| MS.gene49699.t1 | AT1G10280 | 36.250 | 240 | 108 | 7 | 1 | 235 | 208 | 407 | 1.19e-36 | 134 |
| MS.gene49699.t1 | AT2G19160 | 36.066 | 244 | 119 | 7 | 1 | 233 | 169 | 386 | 1.18e-35 | 131 |
| MS.gene49699.t1 | AT2G19160 | 36.066 | 244 | 119 | 7 | 1 | 233 | 169 | 386 | 1.18e-35 | 131 |
| MS.gene49699.t1 | AT1G68390 | 32.353 | 238 | 119 | 5 | 1 | 234 | 203 | 402 | 3.80e-34 | 127 |
| MS.gene49699.t1 | AT1G51770 | 35.443 | 237 | 109 | 6 | 1 | 233 | 189 | 385 | 8.60e-34 | 126 |
| MS.gene49699.t1 | AT5G16170 | 36.134 | 238 | 113 | 6 | 1 | 234 | 201 | 403 | 9.66e-34 | 126 |
| MS.gene49699.t1 | AT4G25870 | 34.711 | 242 | 126 | 8 | 1 | 233 | 162 | 380 | 1.21e-33 | 125 |
| MS.gene49699.t1 | AT5G11730 | 36.402 | 239 | 104 | 8 | 1 | 233 | 183 | 379 | 1.27e-33 | 125 |
| MS.gene49699.t1 | AT5G25970 | 36.134 | 238 | 106 | 7 | 1 | 233 | 184 | 380 | 6.24e-33 | 123 |
| MS.gene49699.t1 | AT5G25970 | 36.134 | 238 | 106 | 7 | 1 | 233 | 184 | 380 | 6.24e-33 | 123 |
| MS.gene49699.t1 | AT5G25970 | 36.134 | 238 | 106 | 7 | 1 | 233 | 184 | 380 | 6.24e-33 | 123 |
| MS.gene49699.t1 | AT4G30060 | 33.195 | 241 | 130 | 6 | 1 | 233 | 172 | 389 | 1.63e-32 | 122 |
| MS.gene49699.t1 | AT4G30060 | 33.195 | 241 | 130 | 6 | 1 | 233 | 172 | 389 | 1.63e-32 | 122 |
| MS.gene49699.t1 | AT1G10880 | 33.333 | 225 | 108 | 5 | 1 | 222 | 183 | 368 | 1.51e-30 | 117 |
| MS.gene49699.t1 | AT3G21310 | 35.294 | 238 | 108 | 8 | 1 | 233 | 180 | 376 | 5.55e-30 | 115 |
| MS.gene49699.t1 | AT3G21310 | 35.294 | 238 | 108 | 8 | 1 | 233 | 180 | 376 | 5.55e-30 | 115 |
| MS.gene49699.t1 | AT1G68380 | 35.443 | 237 | 109 | 8 | 1 | 233 | 189 | 385 | 2.46e-29 | 114 |
| MS.gene49699.t1 | AT5G25330 | 31.667 | 240 | 122 | 6 | 1 | 233 | 150 | 354 | 5.50e-26 | 104 |
| MS.gene49699.t1 | AT4G32290 | 30.131 | 229 | 121 | 7 | 14 | 233 | 173 | 371 | 1.81e-21 | 92.4 |
| MS.gene49699.t1 | AT1G51770 | 30.043 | 233 | 100 | 6 | 1 | 233 | 189 | 358 | 1.98e-19 | 86.7 |
| MS.gene49699.t1 | AT3G52060 | 29.339 | 242 | 118 | 9 | 1 | 233 | 141 | 338 | 3.14e-19 | 85.9 |
| MS.gene49699.t1 | AT5G22070 | 29.008 | 262 | 111 | 10 | 1 | 233 | 139 | 354 | 4.85e-17 | 79.7 |
Find 44 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCCGCTACCCGAATTT+TGG | 0.189280 | 4.4:-8111963 | MS.gene49699:CDS |
| TCTTCCCAAATCTAGCAAAA+AGG | 0.291604 | 4.4:-8111425 | MS.gene49699:intron |
| GATGCTTATTAAATTTATAA+AGG | 0.310256 | 4.4:-8111282 | MS.gene49699:intron |
| GACTTGATCCCTCCAAAATT+CGG | 0.318399 | 4.4:+8111951 | None:intergenic |
| TAGTAAACTTTCTTGCAAAA+AGG | 0.331608 | 4.4:+8110646 | None:intergenic |
| TACAACCTTGGCATGCTTCC+TGG | 0.336465 | 4.4:+8112303 | None:intergenic |
| TCCACGGCGCTCACGATCTC+TGG | 0.364508 | 4.4:+8111343 | None:intergenic |
| CAGTTATAGACTGGAATAAC+TGG | 0.365025 | 4.4:+8112475 | None:intergenic |
| CAGTTATTCCAGTCTATAAC+TGG | 0.365399 | 4.4:-8112474 | MS.gene49699:CDS |
| GTTTGAACATAGTGTTCATC+TGG | 0.409473 | 4.4:+8111665 | None:intergenic |
| AAAACAAAGCGGTCATTTAG+AGG | 0.415697 | 4.4:+8113416 | None:intergenic |
| TGCTTGTACACCATTCTCTT+CGG | 0.432521 | 4.4:+8110691 | None:intergenic |
| TGGTATACAGTTGTGGATCT+TGG | 0.438795 | 4.4:+8111685 | None:intergenic |
| CCAGTCTATAACTGGAGAAA+AGG | 0.444598 | 4.4:-8112466 | MS.gene49699:CDS |
| GTGTAGCTGAAGTTGTATAA+AGG | 0.444599 | 4.4:+8112879 | None:intergenic |
| ACTTGATCCCTCCAAAATTC+GGG | 0.445648 | 4.4:+8111952 | None:intergenic |
| ACACTATGTTCAAACATTGC+TGG | 0.459415 | 4.4:-8111657 | MS.gene49699:CDS |
| TGCAGTGGGCTGTTCTGACC+AGG | 0.465429 | 4.4:-8112321 | MS.gene49699:intron |
| TAACTGGAGAAAAGGATCTC+AGG | 0.488468 | 4.4:-8112458 | MS.gene49699:intron |
| TTTATAAATTTAATAAGCAT+CGG | 0.496105 | 4.4:+8111284 | None:intergenic |
| TACAGCTTCGCTGACACAAA+AGG | 0.500980 | 4.4:-8112523 | MS.gene49699:intron |
| TGGATCTTGGACGTGTCAGC+AGG | 0.503820 | 4.4:+8111698 | None:intergenic |
| GCGCTCACGATCTCTGGAGT+TGG | 0.504969 | 4.4:+8111349 | None:intergenic |
| ATCGTCCTCCACTACAACCT+TGG | 0.509580 | 4.4:+8112291 | None:intergenic |
| TCCCTCCAAAATTCGGGTAG+CGG | 0.515418 | 4.4:+8111958 | None:intergenic |
| TCTGAGAACTTATAAGTCAC+TGG | 0.518003 | 4.4:+8111314 | None:intergenic |
| GGGTGAAGCAAGCATGATAG+AGG | 0.536814 | 4.4:-8113474 | None:intergenic |
| TGCTTTGAAGCTTCTTAACA+TGG | 0.537461 | 4.4:-8110616 | MS.gene49699:intron |
| AAGAGAATGGTGTACAAGCA+AGG | 0.546374 | 4.4:-8110688 | MS.gene49699:CDS |
| GAAGCATGCCAAGGTTGTAG+TGG | 0.562145 | 4.4:-8112299 | MS.gene49699:CDS |
| GTTCATCTGGTATACAGTTG+TGG | 0.575948 | 4.4:+8111678 | None:intergenic |
| ATGTCTAAGTAAAATGCGCT+CGG | 0.580748 | 4.4:+8113451 | None:intergenic |
| GATCAGTGACACATACTGCA+TGG | 0.596005 | 4.4:-8111379 | MS.gene49699:CDS |
| ATCAGTGACACATACTGCAT+GGG | 0.597196 | 4.4:-8111378 | MS.gene49699:CDS |
| AGAGAATGGTGTACAAGCAA+GGG | 0.597758 | 4.4:-8110687 | MS.gene49699:CDS |
| GAGATCGTGAGCGCCGTGGA+TGG | 0.599731 | 4.4:-8111340 | MS.gene49699:CDS |
| GCATGCCAAGGTTGTAGTGG+AGG | 0.609985 | 4.4:-8112296 | MS.gene49699:CDS |
| AGACTGAATACCGAAGAGAA+TGG | 0.627600 | 4.4:-8110701 | MS.gene49699:CDS |
| AAGTCACTGGATGCCATCCA+CGG | 0.632825 | 4.4:+8111327 | None:intergenic |
| TCCAGAGATCGTGAGCGCCG+TGG | 0.637645 | 4.4:-8111344 | MS.gene49699:CDS |
| TCTGACCAGGAAGCATGCCA+AGG | 0.656062 | 4.4:-8112308 | MS.gene49699:CDS |
| TATACCCTCACCTATCTGAG+AGG | 0.685286 | 4.4:+8113393 | None:intergenic |
| AGCTTCGCTGACACAAAAGG+AGG | 0.705360 | 4.4:-8112520 | MS.gene49699:CDS |
| TATCTGAGAGGAAAACAAAG+CGG | 0.756541 | 4.4:+8113405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAATTTAATAAGCAT+CGG | + | chr4.4:8112105-8112124 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTGTTGT+AGG | - | chr4.4:8112641-8112660 | MS.gene49699:intron | 10.0% |
| !! | AAATGAATAAATAACTACAA+AGG | + | chr4.4:8110804-8110823 | None:intergenic | 15.0% |
| !! | ATTTAACAAAACTAATTGTT+GGG | + | chr4.4:8110733-8110752 | None:intergenic | 15.0% |
| !! | GATGCTTATTAAATTTATAA+AGG | - | chr4.4:8112104-8112123 | MS.gene49699:intron | 15.0% |
| !! | TATATAAACTAATAAAAGCA+AGG | - | chr4.4:8112331-8112350 | MS.gene49699:intron | 15.0% |
| !! | TATATAATGATTGAAGTTTA+TGG | + | chr4.4:8110032-8110051 | None:intergenic | 15.0% |
| !! | TATTTAACAAAACTAATTGT+TGG | + | chr4.4:8110734-8110753 | None:intergenic | 15.0% |
| !!! | AACTATTATTTTCTATAAAG+AGG | + | chr4.4:8113462-8113481 | None:intergenic | 15.0% |
| !!! | ACTATTATTTTCTATAAAGA+GGG | + | chr4.4:8113461-8113480 | None:intergenic | 15.0% |
| !!! | ATTAAGATTCAGATTTTATT+AGG | + | chr4.4:8112436-8112455 | None:intergenic | 15.0% |
| !!! | TAATTAACATTTTGTTAGAA+TGG | - | chr4.4:8112240-8112259 | MS.gene49699:intron | 15.0% |
| !! | AAAAATATTAAAGCAAAACC+AGG | + | chr4.4:8111925-8111944 | None:intergenic | 20.0% |
| !! | AAAATATTAAAGCAAAACCA+GGG | + | chr4.4:8111924-8111943 | None:intergenic | 20.0% |
| !! | AGATTAATGTCGTATATATA+TGG | + | chr4.4:8110628-8110647 | None:intergenic | 20.0% |
| !! | ATGGCTTAAAAAATACTAAA+TGG | + | chr4.4:8111335-8111354 | None:intergenic | 20.0% |
| !! | CAAAAAATAAGTAACAATCT+CGG | + | chr4.4:8113144-8113163 | None:intergenic | 20.0% |
| !! | GGTTTCAAAAAAATTTAGTT+TGG | + | chr4.4:8110220-8110239 | None:intergenic | 20.0% |
| !! | TATTGTTTGAATTCATCTTT+AGG | + | chr4.4:8112289-8112308 | None:intergenic | 20.0% |
| !! | TTCAATATTTCATTCTGAAT+TGG | - | chr4.4:8111583-8111602 | MS.gene49699:intron | 20.0% |
| !! | TTCATTCTGTGATAATAATA+GGG | - | chr4.4:8112176-8112195 | MS.gene49699:intron | 20.0% |
| !! | TTGAGTTATTTATCTAAACA+AGG | - | chr4.4:8113110-8113129 | MS.gene49699:intron | 20.0% |
| !! | TTTCATTCTGTGATAATAAT+AGG | - | chr4.4:8112175-8112194 | MS.gene49699:intron | 20.0% |
| !!! | AATGTTTCAAAAATTTTGCA+AGG | - | chr4.4:8111129-8111148 | MS.gene49699:intron | 20.0% |
| !!! | AGATCATTTTTTAGTTTCTT+CGG | - | chr4.4:8112861-8112880 | MS.gene49699:CDS | 20.0% |
| !!! | CAAAAAAATTTAGTTTGGTA+CGG | + | chr4.4:8110215-8110234 | None:intergenic | 20.0% |
| !!! | TGAGCTTTCAAATATTTTTA+CGG | - | chr4.4:8112832-8112851 | MS.gene49699:intron | 20.0% |
| !!! | TTGCAAAATTTTTGAAACAT+TGG | + | chr4.4:8111130-8111149 | None:intergenic | 20.0% |
| !!! | TTGGGTTTTATAACATTTAA+TGG | + | chr4.4:8111304-8111323 | None:intergenic | 20.0% |
| ! | AAAAAAACAAAAAACTGAGC+TGG | - | chr4.4:8110312-8110331 | MS.gene49699:intron | 25.0% |
| ! | AATAATAGGGTTATCATACT+AGG | - | chr4.4:8112189-8112208 | MS.gene49699:intron | 25.0% |
| ! | ACTGAATTGTTCATAAAGTT+TGG | - | chr4.4:8110108-8110127 | MS.gene49699:intron | 25.0% |
| ! | ACTTTATGAACAATTCAGTT+CGG | + | chr4.4:8110107-8110126 | None:intergenic | 25.0% |
| ! | AGAAGAATTCATACAAAGAT+AGG | + | chr4.4:8111046-8111065 | None:intergenic | 25.0% |
| ! | ATAAGTGCTTATCATATAAG+TGG | + | chr4.4:8113075-8113094 | None:intergenic | 25.0% |
| ! | ATACAAAGATAGGTATAAGA+TGG | + | chr4.4:8111036-8111055 | None:intergenic | 25.0% |
| ! | ATACTAAATGGAAGAAAGAT+TGG | + | chr4.4:8111323-8111342 | None:intergenic | 25.0% |
| ! | ATGGTAAGTTCATATATCAT+AGG | - | chr4.4:8112789-8112808 | MS.gene49699:intron | 25.0% |
| ! | CAAATAATGAATGAAGCAAA+AGG | + | chr4.4:8111244-8111263 | None:intergenic | 25.0% |
| ! | CAATCAACTGAAATATAGTA+AGG | + | chr4.4:8110467-8110486 | None:intergenic | 25.0% |
| ! | CTTATATTATGTGTCTCAAT+TGG | - | chr4.4:8111164-8111183 | MS.gene49699:intron | 25.0% |
| ! | TACTAAATGGAAGAAAGATT+GGG | + | chr4.4:8111322-8111341 | None:intergenic | 25.0% |
| ! | TACTTAGTAAAGAAGTAAGA+TGG | - | chr4.4:8113254-8113273 | MS.gene49699:intron | 25.0% |
| ! | TAGTAAACTTTCTTGCAAAA+AGG | + | chr4.4:8112743-8112762 | None:intergenic | 25.0% |
| ! | TATATATGCTGATATGTAGT+AGG | + | chr4.4:8112317-8112336 | None:intergenic | 25.0% |
| ! | TGAAACAAAACTGATAACTA+GGG | - | chr4.4:8110339-8110358 | MS.gene49699:intron | 25.0% |
| ! | TGGTAAGTTCATATATCATA+GGG | - | chr4.4:8112790-8112809 | MS.gene49699:intron | 25.0% |
| ! | TTAACTGAAATCTCCTAAAA+CGG | + | chr4.4:8113184-8113203 | None:intergenic | 25.0% |
| ! | TTGAGACACATAATATAAGA+AGG | + | chr4.4:8111163-8111182 | None:intergenic | 25.0% |
| !! | AACAGTTCTAATATTCGATT+TGG | + | chr4.4:8110289-8110308 | None:intergenic | 25.0% |
| !! | TTTTTGCAAGAAAGTTTACT+AGG | - | chr4.4:8112742-8112761 | MS.gene49699:intron | 25.0% |
| !!! | CTTATTTTTTGATTCTCTGT+TGG | - | chr4.4:8113153-8113172 | MS.gene49699:intron | 25.0% |
| !!! | TAGTTATCAGTTTTGTTTCA+CGG | + | chr4.4:8110339-8110358 | None:intergenic | 25.0% |
| !!! | TTCTAATATTCGATTTGGTT+CGG | + | chr4.4:8110284-8110303 | None:intergenic | 25.0% |
| !!! | TTCTTAGTCTTGTTAAATAG+CGG | - | chr4.4:8112557-8112576 | MS.gene49699:intron | 25.0% |
| AAGAGACAAGCACAAATATA+TGG | + | chr4.4:8111354-8111373 | None:intergenic | 30.0% | |
| AGACACATAATATAAGAAGG+AGG | + | chr4.4:8111160-8111179 | None:intergenic | 30.0% | |
| ATCTTTCATTAGTTGACTGA+TGG | + | chr4.4:8112467-8112486 | None:intergenic | 30.0% | |
| ATTGGTACATGATGTCAATT+AGG | - | chr4.4:8111601-8111620 | MS.gene49699:intron | 30.0% | |
| CATGTGTTCATATAATTCCT+AGG | + | chr4.4:8111629-8111648 | None:intergenic | 30.0% | |
| CCATACGTTGCTTAATTATA+TGG | - | chr4.4:8110396-8110415 | MS.gene49699:intron | 30.0% | |
| CCATATAATTAAGCAACGTA+TGG | + | chr4.4:8110399-8110418 | None:intergenic | 30.0% | |
| GTGAAACAAAACTGATAACT+AGG | - | chr4.4:8110338-8110357 | MS.gene49699:intron | 30.0% | |
| TGTCAAGAAGAAAAAAAGCA+AGG | - | chr4.4:8112364-8112383 | MS.gene49699:intron | 30.0% | |
| ! | AAAACCATGAGAGTATATGA+TGG | + | chr4.4:8111268-8111287 | None:intergenic | 30.0% |
| ! | ATTCAGATTTTATTAGGAGC+AGG | + | chr4.4:8112430-8112449 | None:intergenic | 30.0% |
| ! | TTTAGTTTCTTCGGTTTGAT+TGG | - | chr4.4:8112870-8112889 | MS.gene49699:CDS | 30.0% |
| !! | GAATGGTACTTGATAATGAT+AGG | - | chr4.4:8112257-8112276 | MS.gene49699:intron | 30.0% |
| AAAACAAAGCGGTCATTTAG+AGG | + | chr4.4:8109973-8109992 | None:intergenic | 35.0% | |
| AAACCAAATGATTCTTTGCG+AGG | - | chr4.4:8110235-8110254 | MS.gene49699:intron | 35.0% | |
| AAAGTCGAACTGTGTTTCAT+AGG | + | chr4.4:8113016-8113035 | None:intergenic | 35.0% | |
| AACAAAATGCTTATTGCCAG+TGG | - | chr4.4:8113207-8113226 | MS.gene49699:intron | 35.0% | |
| AAGTACTCTCCACTTACTAT+AGG | - | chr4.4:8110051-8110070 | MS.gene49699:intron | 35.0% | |
| ACACTATGTTCAAACATTGC+TGG | - | chr4.4:8111729-8111748 | MS.gene49699:intron | 35.0% | |
| ACTTACTATAGGACTCTTCA+TGG | - | chr4.4:8110062-8110081 | MS.gene49699:intron | 35.0% | |
| AGCTCTTTCAAACAGTCTAA+AGG | + | chr4.4:8112926-8112945 | None:intergenic | 35.0% | |
| AGGTATAAGATGGCAATCTT+TGG | + | chr4.4:8111026-8111045 | None:intergenic | 35.0% | |
| AGGTCGTTACAATCCAAAAA+TGG | - | chr4.4:8110886-8110905 | MS.gene49699:intron | 35.0% | |
| ATGAAGAGTCCTATAGTAAG+TGG | + | chr4.4:8110063-8110082 | None:intergenic | 35.0% | |
| ATGATGTCAATTAGGTTCCT+AGG | - | chr4.4:8111609-8111628 | MS.gene49699:intron | 35.0% | |
| ATGCAATAGTGTTCACAGAA+AGG | + | chr4.4:8111772-8111791 | None:intergenic | 35.0% | |
| ATGTCTAAGTAAAATGCGCT+CGG | + | chr4.4:8109938-8109957 | None:intergenic | 35.0% | |
| CAGTTATAGACTGGAATAAC+TGG | + | chr4.4:8110914-8110933 | None:intergenic | 35.0% | |
| CAGTTATTCCAGTCTATAAC+TGG | - | chr4.4:8110912-8110931 | MS.gene49699:intron | 35.0% | |
| GTGTAGCTGAAGTTGTATAA+AGG | + | chr4.4:8110510-8110529 | None:intergenic | 35.0% | |
| GTTTGAACATAGTGTTCATC+TGG | + | chr4.4:8111724-8111743 | None:intergenic | 35.0% | |
| TATCTGAGAGGAAAACAAAG+CGG | + | chr4.4:8109984-8110003 | None:intergenic | 35.0% | |
| TCTGAGAACTTATAAGTCAC+TGG | + | chr4.4:8112075-8112094 | None:intergenic | 35.0% | |
| TCTTCCCAAATCTAGCAAAA+AGG | - | chr4.4:8111961-8111980 | MS.gene49699:CDS | 35.0% | |
| TGTATGAATTCTTCTGCAGT+GGG | - | chr4.4:8111051-8111070 | MS.gene49699:intron | 35.0% | |
| TTGTATGAATTCTTCTGCAG+TGG | - | chr4.4:8111050-8111069 | MS.gene49699:intron | 35.0% | |
| TTGTCCATCATATACTCTCA+TGG | - | chr4.4:8111261-8111280 | MS.gene49699:intron | 35.0% | |
| ! | AAAAGCAAGGTGTGAGATTT+TGG | - | chr4.4:8112377-8112396 | MS.gene49699:intron | 35.0% |
| ! | GGAATAACTGGATCCATTTT+TGG | + | chr4.4:8110902-8110921 | None:intergenic | 35.0% |
| ! | TCAAGAAAGTGATTTTGCAG+TGG | + | chr4.4:8112149-8112168 | None:intergenic | 35.0% |
| ! | TTTTATTAGGAGCAGGATCA+AGG | + | chr4.4:8112423-8112442 | None:intergenic | 35.0% |
| !! | ATATTTTTACGTGATCACCC+TGG | - | chr4.4:8111904-8111923 | MS.gene49699:intron | 35.0% |
| !! | CAGTCTAAAGGTGTTTATGT+CGG | + | chr4.4:8112914-8112933 | None:intergenic | 35.0% |
| !! | TGCTTTGAAGCTTCTTAACA+TGG | - | chr4.4:8112770-8112789 | MS.gene49699:intron | 35.0% |
| !! | TTCGTGTTAGTTCTTTTTCG+AGG | + | chr4.4:8111987-8112006 | None:intergenic | 35.0% |
| AAGAGAATGGTGTACAAGCA+AGG | - | chr4.4:8112698-8112717 | MS.gene49699:intron | 40.0% | |
| ACTTGATCCCTCCAAAATTC+GGG | + | chr4.4:8111437-8111456 | None:intergenic | 40.0% | |
| AGACTGAATACCGAAGAGAA+TGG | - | chr4.4:8112685-8112704 | MS.gene49699:intron | 40.0% | |
| AGAGAATGGTGTACAAGCAA+GGG | - | chr4.4:8112699-8112718 | MS.gene49699:intron | 40.0% | |
| AGTCCTCGCAAAGAATCATT+TGG | + | chr4.4:8110241-8110260 | None:intergenic | 40.0% | |
| ATCAGTGACACATACTGCAT+GGG | - | chr4.4:8112008-8112027 | MS.gene49699:intron | 40.0% | |
| CCAGTCTATAACTGGAGAAA+AGG | - | chr4.4:8110920-8110939 | MS.gene49699:intron | 40.0% | |
| CTGTGTTTCATAGGCTATCT+TGG | + | chr4.4:8113007-8113026 | None:intergenic | 40.0% | |
| GACTTGATCCCTCCAAAATT+CGG | + | chr4.4:8111438-8111457 | None:intergenic | 40.0% | |
| GGGGTAAACTATTAGTGGTT+TGG | + | chr4.4:8110144-8110163 | None:intergenic | 40.0% | |
| GTTCATCTGGTATACAGTTG+TGG | + | chr4.4:8111711-8111730 | None:intergenic | 40.0% | |
| TAACTGGAGAAAAGGATCTC+AGG | - | chr4.4:8110928-8110947 | MS.gene49699:intron | 40.0% | |
| TCTTGCAAAAAGGAAGCAAG+TGG | + | chr4.4:8112733-8112752 | None:intergenic | 40.0% | |
| TGCTTGTACACCATTCTCTT+CGG | + | chr4.4:8112698-8112717 | None:intergenic | 40.0% | |
| TGGTATACAGTTGTGGATCT+TGG | + | chr4.4:8111704-8111723 | None:intergenic | 40.0% | |
| ! | CCTTTTCTCCAGTTATAGAC+TGG | + | chr4.4:8110923-8110942 | None:intergenic | 40.0% |
| ! | GAAATGTGCTAGAGAGCATA+AGG | + | chr4.4:8110596-8110615 | None:intergenic | 40.0% |
| ! | GAGGCCTTTTTGCTAGATTT+GGG | + | chr4.4:8111968-8111987 | None:intergenic | 40.0% |
| ! | TTTTCCTCTCAGATAGGTGA+GGG | - | chr4.4:8109989-8110008 | MS.gene49699:intron | 40.0% |
| !!! | CATCGACTAGTTTTGTCGAT+AGG | - | chr4.4:8110550-8110569 | MS.gene49699:intron | 40.0% |
| !!! | GCTTTGTTTTCCTCTCAGAT+AGG | - | chr4.4:8109983-8110002 | MS.gene49699:intron | 40.0% |
| ACTGAACCTACACATCAGCT+CGG | + | chr4.4:8110175-8110194 | None:intergenic | 45.0% | |
| CTTCATGGTTTCGTTCAGGA+GGG | - | chr4.4:8110077-8110096 | MS.gene49699:intron | 45.0% | |
| GACTCTTCATGGTTTCGTTC+AGG | - | chr4.4:8110073-8110092 | MS.gene49699:intron | 45.0% | |
| GATCAGTGACACATACTGCA+TGG | - | chr4.4:8112007-8112026 | MS.gene49699:intron | 45.0% | |
| GATGTGTAGGTTCAGTGTAC+CGG | - | chr4.4:8110179-8110198 | MS.gene49699:intron | 45.0% | |
| GCAAAAAGGAAGCAAGTGGA+CGG | + | chr4.4:8112729-8112748 | None:intergenic | 45.0% | |
| GGGTTATCATACTAGGAAGC+TGG | - | chr4.4:8112196-8112215 | MS.gene49699:intron | 45.0% | |
| GGTTCGGGGTAAACTATTAG+TGG | + | chr4.4:8110149-8110168 | None:intergenic | 45.0% | |
| TACAGCTTCGCTGACACAAA+AGG | - | chr4.4:8110863-8110882 | MS.gene49699:intron | 45.0% | |
| TAGAATGAGACTATCGCCGT+CGG | + | chr4.4:8111382-8111401 | None:intergenic | 45.0% | |
| TATACCCTCACCTATCTGAG+AGG | + | chr4.4:8109996-8110015 | None:intergenic | 45.0% | |
| TCTTCATGGTTTCGTTCAGG+AGG | - | chr4.4:8110076-8110095 | MS.gene49699:intron | 45.0% | |
| TGATTCTTTGCGAGGACTGT+TGG | - | chr4.4:8110243-8110262 | MS.gene49699:intron | 45.0% | |
| TTGGTACGGAACCACATAAC+CGG | + | chr4.4:8110201-8110220 | None:intergenic | 45.0% | |
| ! | AAAAGCCGCTACCCGAATTT+TGG | - | chr4.4:8111423-8111442 | MS.gene49699:intron | 45.0% |
| ! | CGAGGCCTTTTTGCTAGATT+TGG | + | chr4.4:8111969-8111988 | None:intergenic | 45.0% |
| ! | GCTTGTCTCTTTTATGCCGA+CGG | - | chr4.4:8111363-8111382 | MS.gene49699:CDS | 45.0% |
| ! | GTTTTCCTCTCAGATAGGTG+AGG | - | chr4.4:8109988-8110007 | MS.gene49699:intron | 45.0% |
| ! | TCTGTTGGACAGTCCGTTTT+AGG | - | chr4.4:8113168-8113187 | MS.gene49699:intron | 45.0% |
| AAGTCACTGGATGCCATCCA+CGG | + | chr4.4:8112062-8112081 | None:intergenic | 50.0% | |
| ACCTACACATCAGCTCGGTT+CGG | + | chr4.4:8110170-8110189 | None:intergenic | 50.0% | |
| ACTCTGCTTGTATCAGCCAC+TGG | + | chr4.4:8113226-8113245 | None:intergenic | 50.0% | |
| AGCTTCGCTGACACAAAAGG+AGG | - | chr4.4:8110866-8110885 | MS.gene49699:intron | 50.0% | |
| ATCGTCCTCCACTACAACCT+TGG | + | chr4.4:8111098-8111117 | None:intergenic | 50.0% | |
| GAAGCATGCCAAGGTTGTAG+TGG | - | chr4.4:8111087-8111106 | MS.gene49699:intron | 50.0% | |
| TACAACCTTGGCATGCTTCC+TGG | + | chr4.4:8111086-8111105 | None:intergenic | 50.0% | |
| TCCCTCCAAAATTCGGGTAG+CGG | + | chr4.4:8111431-8111450 | None:intergenic | 50.0% | |
| !! | GGTTCAGTGTACCGGTTATG+TGG | - | chr4.4:8110187-8110206 | MS.gene49699:intron | 50.0% |
| ACCGAACCGAGCTGATGTGT+AGG | - | chr4.4:8110166-8110185 | MS.gene49699:intron | 55.0% | |
| GCATGCCAAGGTTGTAGTGG+AGG | - | chr4.4:8111090-8111109 | MS.gene49699:intron | 55.0% | |
| TGGATCTTGGACGTGTCAGC+AGG | + | chr4.4:8111691-8111710 | None:intergenic | 55.0% | |
| ! | AGCCGCTACCCGAATTTTGG+AGG | - | chr4.4:8111426-8111445 | MS.gene49699:intron | 55.0% |
| ! | GCCGCTACCCGAATTTTGGA+GGG | - | chr4.4:8111427-8111446 | MS.gene49699:intron | 55.0% |
| ! | TCTGACCAGGAAGCATGCCA+AGG | - | chr4.4:8111078-8111097 | MS.gene49699:intron | 55.0% |
| !! | ACATCAGCTCGGTTCGGTTC+GGG | + | chr4.4:8110164-8110183 | None:intergenic | 55.0% |
| !! | CACATCAGCTCGGTTCGGTT+CGG | + | chr4.4:8110165-8110184 | None:intergenic | 55.0% |
| TCAGCAGGCTGCGCGAAGAA+AGG | + | chr4.4:8111676-8111695 | None:intergenic | 60.0% | |
| !! | CATCAGCTCGGTTCGGTTCG+GGG | + | chr4.4:8110163-8110182 | None:intergenic | 60.0% |
| !! | GCGCTCACGATCTCTGGAGT+TGG | + | chr4.4:8112040-8112059 | None:intergenic | 60.0% |
| !! | TGCAGTGGGCTGTTCTGACC+AGG | - | chr4.4:8111065-8111084 | MS.gene49699:intron | 60.0% |
| TCCACGGCGCTCACGATCTC+TGG | + | chr4.4:8112046-8112065 | None:intergenic | 65.0% | |
| ! | GAGATCGTGAGCGCCGTGGA+TGG | - | chr4.4:8112046-8112065 | MS.gene49699:intron | 65.0% |
| ! | TCCAGAGATCGTGAGCGCCG+TGG | - | chr4.4:8112042-8112061 | MS.gene49699:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8109925 | 8113483 | 8109925 | ID=MS.gene49699 |
| chr4.4 | mRNA | 8109925 | 8113483 | 8109925 | ID=MS.gene49699.t1;Parent=MS.gene49699 |
| chr4.4 | exon | 8113404 | 8113483 | 8113404 | ID=MS.gene49699.t1.exon1;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8113404 | 8113483 | 8113404 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8112837 | 8112908 | 8112837 | ID=MS.gene49699.t1.exon2;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8112837 | 8112908 | 8112837 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8112459 | 8112540 | 8112459 | ID=MS.gene49699.t1.exon3;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8112459 | 8112540 | 8112459 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8112258 | 8112338 | 8112258 | ID=MS.gene49699.t1.exon4;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8112258 | 8112338 | 8112258 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8111948 | 8111986 | 8111948 | ID=MS.gene49699.t1.exon5;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8111948 | 8111986 | 8111948 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8111655 | 8111720 | 8111655 | ID=MS.gene49699.t1.exon6;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8111655 | 8111720 | 8111655 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8111283 | 8111432 | 8111283 | ID=MS.gene49699.t1.exon7;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8111283 | 8111432 | 8111283 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8110617 | 8110745 | 8110617 | ID=MS.gene49699.t1.exon8;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8110617 | 8110745 | 8110617 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| chr4.4 | exon | 8109925 | 8109981 | 8109925 | ID=MS.gene49699.t1.exon9;Parent=MS.gene49699.t1 |
| chr4.4 | CDS | 8109925 | 8109981 | 8109925 | ID=cds.MS.gene49699.t1;Parent=MS.gene49699.t1 |
| Gene Sequence |
| Protein sequence |
