Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49786.t1 | XP_003618953.1 | 92.8 | 236 | 9 | 1 | 1 | 236 | 1 | 228 | 3.00E-116 | 427.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49786.t1 | B7FJV5 | 92.8 | 236 | 9 | 1 | 1 | 236 | 1 | 228 | 2.1e-116 | 427.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050105 | MS.gene49786 | 0.816782 | 4.63E-52 | -1.69E-46 |
MS.gene050508 | MS.gene49786 | 0.875073 | 4.11E-68 | -1.69E-46 |
MS.gene051368 | MS.gene49786 | 0.833744 | 4.47E-56 | -1.69E-46 |
MS.gene052333 | MS.gene49786 | 0.825011 | 5.91E-54 | -1.69E-46 |
MS.gene054537 | MS.gene49786 | 0.801562 | 8.49E-49 | -1.69E-46 |
MS.gene055225 | MS.gene49786 | 0.825228 | 5.26E-54 | -1.69E-46 |
MS.gene055367 | MS.gene49786 | 0.805773 | 1.14E-49 | -1.69E-46 |
MS.gene055701 | MS.gene49786 | 0.82388 | 1.09E-53 | -1.69E-46 |
MS.gene056506 | MS.gene49786 | 0.807837 | 4.16E-50 | -1.69E-46 |
MS.gene057156 | MS.gene49786 | -0.812318 | 4.50E-51 | -1.69E-46 |
MS.gene059710 | MS.gene49786 | 0.864385 | 1.26E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49786.t1 | MTR_6g029250 | 92.797 | 236 | 9 | 1 | 1 | 236 | 1 | 228 | 7.25e-153 | 424 |
MS.gene49786.t1 | MTR_7g085790 | 48.077 | 260 | 98 | 9 | 1 | 233 | 1 | 250 | 1.33e-65 | 204 |
MS.gene49786.t1 | MTR_7g085790 | 44.400 | 250 | 83 | 10 | 1 | 233 | 1 | 211 | 5.72e-54 | 173 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49786.t1 | AT3G03870 | 37.184 | 277 | 117 | 15 | 1 | 233 | 1 | 264 | 2.94e-31 | 116 |
MS.gene49786.t1 | AT5G18130 | 44.186 | 172 | 60 | 8 | 91 | 233 | 114 | 278 | 1.18e-30 | 115 |
MS.gene49786.t1 | AT3G03870 | 32.645 | 242 | 107 | 14 | 1 | 199 | 1 | 229 | 2.88e-14 | 70.1 |
MS.gene49786.t1 | AT5G18130 | 37.857 | 140 | 52 | 7 | 91 | 202 | 114 | 246 | 6.31e-14 | 69.3 |
Find 36 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATAGTGGTTTCAATTTA+TGG | 0.126095 | 6.3:+20325986 | MS.gene49786:CDS |
GTTATGTGAGCTCTTGTTAT+TGG | 0.194388 | 6.3:-20327147 | None:intergenic |
TCTTTCTCAATAATCATTCT+TGG | 0.230298 | 6.3:-20325919 | None:intergenic |
AAGATTAAGGAAAATGAAAT+TGG | 0.238321 | 6.3:+20325841 | MS.gene49786:CDS |
GTTGGTGCTATTTGCACTTT+TGG | 0.279828 | 6.3:+20326027 | MS.gene49786:CDS |
ATTATTGAGAAAGATGATTT+TGG | 0.285258 | 6.3:+20325928 | MS.gene49786:CDS |
TTACCAAGTTTGAGGTCTAA+TGG | 0.382258 | 6.3:-20325730 | None:intergenic |
TAACACCTCAAATGATGTTA+TGG | 0.383015 | 6.3:+20325750 | MS.gene49786:CDS |
GTGGTTTCAATTTATGGAAG+TGG | 0.411257 | 6.3:+20325992 | MS.gene49786:CDS |
GAAGCAATTTCTGTTGTAAG+AGG | 0.414220 | 6.3:+20327120 | MS.gene49786:CDS |
GGTCTAATGGAATTTGTAAA+GGG | 0.426783 | 6.3:-20325717 | None:intergenic |
TTATGGAAGTGGAGTCTTAG+TGG | 0.445021 | 6.3:+20326003 | MS.gene49786:CDS |
TTGAGGTGTTACCAAGTTTG+AGG | 0.452496 | 6.3:-20325738 | None:intergenic |
AGGTCTAATGGAATTTGTAA+AGG | 0.463571 | 6.3:-20325718 | None:intergenic |
TGGGAAGTAGAGGACAATAG+TGG | 0.465059 | 6.3:+20325973 | MS.gene49786:CDS |
TTCAGAAGGATCAGAAGAAT+AGG | 0.469303 | 6.3:+20326106 | MS.gene49786:CDS |
TTGAACCATAACATCATTTG+AGG | 0.471724 | 6.3:-20325755 | None:intergenic |
TCTTTGCTACTACTTGACTT+TGG | 0.472978 | 6.3:-20325883 | None:intergenic |
TGGAGATGGATCTTGATGAA+TGG | 0.483700 | 6.3:+20325557 | None:intergenic |
GAATTTGTAAAGGGACAAGT+TGG | 0.486114 | 6.3:-20325708 | None:intergenic |
GGAGATGGATCTTGATGAAT+GGG | 0.498676 | 6.3:+20325558 | None:intergenic |
ATTCCATTAGACCTCAAACT+TGG | 0.502699 | 6.3:+20325727 | MS.gene49786:CDS |
CAAAGAAGAGGATTCAAGTT+GGG | 0.511674 | 6.3:+20325954 | MS.gene49786:CDS |
TATATTGATTTCAATGAAGA+TGG | 0.511704 | 6.3:+20325601 | MS.gene49786:CDS |
TGTTCTTTGGAAGCCAACAT+AGG | 0.514724 | 6.3:+20326076 | MS.gene49786:CDS |
AAGCAATTTCTGTTGTAAGA+GGG | 0.518875 | 6.3:+20327121 | MS.gene49786:CDS |
GGATTCAAGTTGGGAAGTAG+AGG | 0.539605 | 6.3:+20325963 | MS.gene49786:CDS |
AGCAATTTCTGTTGTAAGAG+GGG | 0.561387 | 6.3:+20327122 | MS.gene49786:CDS |
ATTTCAGAGGATTAAGCAAG+TGG | 0.575069 | 6.3:+20327074 | MS.gene49786:intron |
AAGTGGAGTCTTAGTGGTGT+TGG | 0.575334 | 6.3:+20326009 | MS.gene49786:CDS |
ACAAGAGCTCACATAACAGT+TGG | 0.586253 | 6.3:+20327153 | MS.gene49786:CDS |
ACAAAGAAGAGGATTCAAGT+TGG | 0.588072 | 6.3:+20325953 | MS.gene49786:CDS |
AGAGCTCACATAACAGTTGG+TGG | 0.589518 | 6.3:+20327156 | MS.gene49786:CDS |
TGGGAATCAATCTCTAGTGA+TGG | 0.593054 | 6.3:+20325577 | MS.gene49786:CDS |
ATCAGAAAGTGCTTTAGACA+TGG | 0.600275 | 6.3:+20325651 | MS.gene49786:CDS |
TCAAATCTATGCTGATGACA+AGG | 0.621211 | 6.3:+20326131 | MS.gene49786:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCAAATCATATATATTTTTT+TGG | + | chr6.3:20326172-20326191 | MS.gene49786:intron | 10.0% |
!!! | TTTTAGTCATTATATTGTTA+AGG | + | chr6.3:20326421-20326440 | MS.gene49786:intron | 15.0% |
!!! | TTTTGATTCGAAAAATAAAT+TGG | - | chr6.3:20326690-20326709 | None:intergenic | 15.0% |
!! | AAGATTAAGGAAAATGAAAT+TGG | + | chr6.3:20325841-20325860 | MS.gene49786:CDS | 20.0% |
!! | ATCATTTATTCAAGAAATAC+CGG | + | chr6.3:20326789-20326808 | MS.gene49786:intron | 20.0% |
!! | TTCATAAAGTCAATTATAAG+TGG | - | chr6.3:20326759-20326778 | None:intergenic | 20.0% |
!!! | AAATAAATTGGAGTATCAAT+TGG | - | chr6.3:20326678-20326697 | None:intergenic | 20.0% |
!!! | ACAAGTTTTCTTTAAGATTA+AGG | + | chr6.3:20325828-20325847 | MS.gene49786:CDS | 20.0% |
!!! | ATTATTGAGAAAGATGATTT+TGG | + | chr6.3:20325928-20325947 | MS.gene49786:CDS | 20.0% |
!!! | GGATGGAATTTTATTATATT+TGG | + | chr6.3:20326997-20327016 | MS.gene49786:intron | 20.0% |
!!! | TATATTGATTTCAATGAAGA+TGG | + | chr6.3:20325601-20325620 | MS.gene49786:CDS | 20.0% |
!!! | TTTTACTCTATAGTATTTCT+GGG | - | chr6.3:20326957-20326976 | None:intergenic | 20.0% |
!!! | TTTTTACTCTATAGTATTTC+TGG | - | chr6.3:20326958-20326977 | None:intergenic | 20.0% |
! | AAAAAAAGTTTCCTAGGAAA+AGG | + | chr6.3:20325628-20325647 | MS.gene49786:CDS | 25.0% |
! | ACAATAGTGGTTTCAATTTA+TGG | + | chr6.3:20325986-20326005 | MS.gene49786:CDS | 25.0% |
! | CGAATGTCATCAATATTTAT+CGG | - | chr6.3:20326553-20326572 | None:intergenic | 25.0% |
! | TCATTTATTCAAGAAATACC+GGG | + | chr6.3:20326790-20326809 | MS.gene49786:intron | 25.0% |
! | TCTTTCTCAATAATCATTCT+TGG | - | chr6.3:20325922-20325941 | None:intergenic | 25.0% |
! | TTGTATATTGAACTAAACCT+TGG | + | chr6.3:20327046-20327065 | MS.gene49786:intron | 25.0% |
!! | AGAATCTGGTTTAGTATAAA+TGG | + | chr6.3:20326270-20326289 | MS.gene49786:intron | 25.0% |
!! | TCAAGATTTTAAATTGCTCT+TGG | + | chr6.3:20326335-20326354 | MS.gene49786:intron | 25.0% |
!! | TTTTCGAATCAAAACAATCA+GGG | + | chr6.3:20326696-20326715 | MS.gene49786:intron | 25.0% |
!!! | ATTGATGATTCTTTAGAGTT+GGG | + | chr6.3:20326491-20326510 | MS.gene49786:intron | 25.0% |
!!! | GTAAAAAAGTGTTAACTTTG+TGG | + | chr6.3:20326971-20326990 | MS.gene49786:intron | 25.0% |
!!! | TCTATTTGTGTTTTGTTCTT+TGG | + | chr6.3:20326063-20326082 | MS.gene49786:CDS | 25.0% |
!!! | TTTTTCGAATCAAAACAATC+AGG | + | chr6.3:20326695-20326714 | MS.gene49786:intron | 25.0% |
AAAGTCAATTATAAGTGGCA+TGG | - | chr6.3:20326754-20326773 | None:intergenic | 30.0% | |
AAGCAATTTCTGTTGTAAGA+GGG | + | chr6.3:20327121-20327140 | MS.gene49786:CDS | 30.0% | |
ACATAGGAAAAAACTTCAGA+AGG | + | chr6.3:20326092-20326111 | MS.gene49786:CDS | 30.0% | |
AGGTCTAATGGAATTTGTAA+AGG | - | chr6.3:20325721-20325740 | None:intergenic | 30.0% | |
CTTAGTCATTTGATCTTGAT+CGG | + | chr6.3:20326590-20326609 | MS.gene49786:intron | 30.0% | |
GAATCATCAATCAACTAACA+AGG | - | chr6.3:20326482-20326501 | None:intergenic | 30.0% | |
GACAAGGTTAGTAAATTTCT+TGG | + | chr6.3:20326147-20326166 | MS.gene49786:intron | 30.0% | |
GGTCTAATGGAATTTGTAAA+GGG | - | chr6.3:20325720-20325739 | None:intergenic | 30.0% | |
TAACACCTCAAATGATGTTA+TGG | + | chr6.3:20325750-20325769 | MS.gene49786:CDS | 30.0% | |
TTGAACCATAACATCATTTG+AGG | - | chr6.3:20325758-20325777 | None:intergenic | 30.0% | |
!! | GATTGATGATTCTTTAGAGT+TGG | + | chr6.3:20326490-20326509 | MS.gene49786:intron | 30.0% |
!! | TTGATGATTCTTTAGAGTTG+GGG | + | chr6.3:20326492-20326511 | MS.gene49786:intron | 30.0% |
!!! | ACAAGTTGGTTTTGTTTTCT+TGG | - | chr6.3:20325697-20325716 | None:intergenic | 30.0% |
!!! | TCTGAAGTTTTTTCCTATGT+TGG | - | chr6.3:20326092-20326111 | None:intergenic | 30.0% |
AAGAAATACCGGGAAATACT+TGG | + | chr6.3:20326800-20326819 | MS.gene49786:intron | 35.0% | |
ACAAAGAAGAGGATTCAAGT+TGG | + | chr6.3:20325953-20325972 | MS.gene49786:CDS | 35.0% | |
AGAAATACCGGGAAATACTT+GGG | + | chr6.3:20326801-20326820 | MS.gene49786:intron | 35.0% | |
AGCAATTTCTGTTGTAAGAG+GGG | + | chr6.3:20327122-20327141 | MS.gene49786:CDS | 35.0% | |
ATTCCATTAGACCTCAAACT+TGG | + | chr6.3:20325727-20325746 | MS.gene49786:CDS | 35.0% | |
ATTTCAGAGGATTAAGCAAG+TGG | + | chr6.3:20327074-20327093 | MS.gene49786:intron | 35.0% | |
GAAGCAATTTCTGTTGTAAG+AGG | + | chr6.3:20327120-20327139 | MS.gene49786:CDS | 35.0% | |
GAATTTGTAAAGGGACAAGT+TGG | - | chr6.3:20325711-20325730 | None:intergenic | 35.0% | |
GGTGAGAAAAAAAGTTTCCT+AGG | + | chr6.3:20325622-20325641 | MS.gene49786:CDS | 35.0% | |
GTGGTTTCAATTTATGGAAG+TGG | + | chr6.3:20325992-20326011 | MS.gene49786:CDS | 35.0% | |
TCAAATCTATGCTGATGACA+AGG | + | chr6.3:20326131-20326150 | MS.gene49786:CDS | 35.0% | |
TCTTTGCTACTACTTGACTT+TGG | - | chr6.3:20325886-20325905 | None:intergenic | 35.0% | |
TGTCAATGACTGATGTTTGT+CGG | + | chr6.3:20326247-20326266 | MS.gene49786:intron | 35.0% | |
TTCAGAAGGATCAGAAGAAT+AGG | + | chr6.3:20326106-20326125 | MS.gene49786:CDS | 35.0% | |
! | AAAGTGTTAACTTTGTGGCA+AGG | + | chr6.3:20326976-20326995 | MS.gene49786:intron | 35.0% |
! | CAAAGAAGAGGATTCAAGTT+GGG | + | chr6.3:20325954-20325973 | MS.gene49786:CDS | 35.0% |
! | GTTATGTGAGCTCTTGTTAT+TGG | - | chr6.3:20327150-20327169 | None:intergenic | 35.0% |
! | TTACCAAGTTTGAGGTCTAA+TGG | - | chr6.3:20325733-20325752 | None:intergenic | 35.0% |
!! | AAATACTTGGGTGCCATTAA+TGG | + | chr6.3:20326813-20326832 | MS.gene49786:intron | 35.0% |
!! | ATCAGAAAGTGCTTTAGACA+TGG | + | chr6.3:20325651-20325670 | MS.gene49786:CDS | 35.0% |
!! | ATCCTCTGAAATCAAAACCA+AGG | - | chr6.3:20327066-20327085 | None:intergenic | 35.0% |
!! | TACTCTATAGTATTTCTGGG+TGG | - | chr6.3:20326954-20326973 | None:intergenic | 35.0% |
!! | TGATTTTGGTGACAAAGAAG+AGG | + | chr6.3:20325942-20325961 | MS.gene49786:CDS | 35.0% |
!!! | AACCTTGGTTTTGATTTCAG+AGG | + | chr6.3:20327061-20327080 | MS.gene49786:intron | 35.0% |
!!! | AGTTGGTTTTGTTTTCTTGG+TGG | - | chr6.3:20325694-20325713 | None:intergenic | 35.0% |
!!! | TTTTGTTTTCTTGGTGGTGA+AGG | - | chr6.3:20325688-20325707 | None:intergenic | 35.0% |
ACAAGAGCTCACATAACAGT+TGG | + | chr6.3:20327153-20327172 | MS.gene49786:CDS | 40.0% | |
ACACACACATCCACAATGTT+TGG | - | chr6.3:20326873-20326892 | None:intergenic | 40.0% | |
CACACACATCCACAATGTTT+GGG | - | chr6.3:20326872-20326891 | None:intergenic | 40.0% | |
GGAGTCATAGTTAGCATGTA+TGG | + | chr6.3:20326522-20326541 | MS.gene49786:intron | 40.0% | |
TGGGAATCAATCTCTAGTGA+TGG | + | chr6.3:20325577-20325596 | MS.gene49786:CDS | 40.0% | |
TGTTAACTTTGTGGCAAGGA+TGG | + | chr6.3:20326980-20326999 | MS.gene49786:intron | 40.0% | |
TTATGGAAGTGGAGTCTTAG+TGG | + | chr6.3:20326003-20326022 | MS.gene49786:CDS | 40.0% | |
TTGTTAAGGCTGCAATCACA+TGG | + | chr6.3:20326435-20326454 | MS.gene49786:intron | 40.0% | |
! | CACTTTCTGATCCTTTTCCT+AGG | - | chr6.3:20325642-20325661 | None:intergenic | 40.0% |
! | TGTTCTTTGGAAGCCAACAT+AGG | + | chr6.3:20326076-20326095 | MS.gene49786:CDS | 40.0% |
! | TTGAGGTGTTACCAAGTTTG+AGG | - | chr6.3:20325741-20325760 | None:intergenic | 40.0% |
!! | CTTTAGAGTTGGGGAATTTG+TGG | + | chr6.3:20326501-20326520 | MS.gene49786:intron | 40.0% |
!! | TAATGGCATGGTGCCATTAA+TGG | + | chr6.3:20326918-20326937 | MS.gene49786:intron | 40.0% |
!!! | GTTGGTGCTATTTGCACTTT+TGG | + | chr6.3:20326027-20326046 | MS.gene49786:CDS | 40.0% |
AAGTGGAGTCTTAGTGGTGT+TGG | + | chr6.3:20326009-20326028 | MS.gene49786:CDS | 45.0% | |
AATGGCACCCAAGTATTTCC+CGG | - | chr6.3:20326811-20326830 | None:intergenic | 45.0% | |
AGAGCTCACATAACAGTTGG+TGG | + | chr6.3:20327156-20327175 | MS.gene49786:CDS | 45.0% | |
CATCAATGGCCAGGATGTAA+TGG | - | chr6.3:20326846-20326865 | None:intergenic | 45.0% | |
CATTACATCCTGGCCATTGA+TGG | + | chr6.3:20326844-20326863 | MS.gene49786:intron | 45.0% | |
CTGATGTTTGTCGGAGAATC+TGG | + | chr6.3:20326256-20326275 | MS.gene49786:intron | 45.0% | |
GTTGAATCTCAGTCGATCGT+GGG | + | chr6.3:20326718-20326737 | MS.gene49786:intron | 45.0% | |
TGGGAAGTAGAGGACAATAG+TGG | + | chr6.3:20325973-20325992 | MS.gene49786:CDS | 45.0% | |
! | CAATGTTTGGGTGCCATCAA+TGG | - | chr6.3:20326860-20326879 | None:intergenic | 45.0% |
! | CTGCAATCACATGGCAGTTT+TGG | + | chr6.3:20326444-20326463 | MS.gene49786:intron | 45.0% |
! | TGTGTGTGGTGGAGATCTAA+TGG | + | chr6.3:20326901-20326920 | MS.gene49786:intron | 45.0% |
! | TTGATGGCACCCAAACATTG+TGG | + | chr6.3:20326860-20326879 | MS.gene49786:intron | 45.0% |
!! | AGTATTTCTGGGTGGCACTT+TGG | - | chr6.3:20326946-20326965 | None:intergenic | 45.0% |
!! | GGATTCAAGTTGGGAAGTAG+AGG | + | chr6.3:20325963-20325982 | MS.gene49786:CDS | 45.0% |
!! | TAATGGCACGGTGCCATTAA+TGG | - | chr6.3:20326829-20326848 | None:intergenic | 45.0% |
!! | TGGCACTTTGGTGCCATTAA+TGG | - | chr6.3:20326934-20326953 | None:intergenic | 45.0% |
ATGGCCAGGATGTAATGGCA+CGG | - | chr6.3:20326841-20326860 | None:intergenic | 50.0% | |
GGTTGAATCTCAGTCGATCG+TGG | + | chr6.3:20326717-20326736 | MS.gene49786:intron | 50.0% | |
GTGTGTGTGATGTGTGTGTG+TGG | + | chr6.3:20326887-20326906 | MS.gene49786:intron | 50.0% | |
TGTGTGATGTGTGTGTGTGG+TGG | + | chr6.3:20326890-20326909 | MS.gene49786:intron | 50.0% | |
! | GTGGTGGAGATCTAATGGCA+TGG | + | chr6.3:20326906-20326925 | MS.gene49786:intron | 50.0% |
! | TTTGGGTGCCATCAATGGCC+AGG | - | chr6.3:20326855-20326874 | None:intergenic | 55.0% |
! | GGCACCGTGCCATTACATCC+TGG | + | chr6.3:20326834-20326853 | MS.gene49786:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 20325562 | 20327200 | 20325562 | ID=MS.gene49786 |
chr6.3 | mRNA | 20325562 | 20327200 | 20325562 | ID=MS.gene49786.t1;Parent=MS.gene49786 |
chr6.3 | exon | 20325562 | 20326152 | 20325562 | ID=MS.gene49786.t1.exon1;Parent=MS.gene49786.t1 |
chr6.3 | CDS | 20325562 | 20326152 | 20325562 | ID=cds.MS.gene49786.t1;Parent=MS.gene49786.t1 |
chr6.3 | exon | 20327081 | 20327200 | 20327081 | ID=MS.gene49786.t1.exon2;Parent=MS.gene49786.t1 |
chr6.3 | CDS | 20327081 | 20327200 | 20327081 | ID=cds.MS.gene49786.t1;Parent=MS.gene49786.t1 |
Gene Sequence |
Protein sequence |