Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49837.t1 | XP_013451526.1 | 95.3 | 85 | 3 | 1 | 4 | 88 | 3 | 86 | 1.40E-36 | 163.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49837.t1 | A0A072UIA7 | 95.3 | 85 | 3 | 1 | 4 | 88 | 3 | 86 | 9.8e-37 | 163.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053298 | MS.gene49837 | 0.822017 | 2.97E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene49837 | 0.816533 | 5.27E-52 | -1.69E-46 |
| MS.gene054222 | MS.gene49837 | 0.823342 | 1.46E-53 | -1.69E-46 |
| MS.gene056315 | MS.gene49837 | 0.803176 | 3.95E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49837.t1 | MTR_6g027600 | 95.294 | 85 | 3 | 1 | 4 | 88 | 3 | 86 | 4.05e-53 | 168 |
| MS.gene49837.t1 | MTR_6g027600 | 95.294 | 85 | 3 | 1 | 4 | 88 | 3 | 86 | 4.61e-53 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49837.t1 | AT5G37480 | 51.724 | 87 | 39 | 1 | 6 | 92 | 3 | 86 | 3.78e-20 | 84.0 |
| MS.gene49837.t1 | AT5G37480 | 51.724 | 87 | 39 | 1 | 6 | 92 | 3 | 86 | 3.78e-20 | 84.0 |
Find 85 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTTTCTCCAGGTTTC+AGG | 0.139796 | 6.3:+19231193 | MS.gene49837:intron |
| AATGCTATTCTTTCCAATTT+TGG | 0.150906 | 6.3:+19228734 | MS.gene49837:CDS |
| CTTCCAATTATGACCAAAAT+TGG | 0.151572 | 6.3:-19228747 | None:intergenic |
| TCGTCGGGCCTTGTTGAAAA+TGG | 0.202110 | 6.3:-19230356 | None:intergenic |
| GAACCGTTCCTTTGAGTTTC+CGG | 0.215573 | 6.3:-19228643 | None:intergenic |
| CTTCAAACTGTTCTTTCTTC+TGG | 0.239083 | 6.3:+19228770 | MS.gene49837:CDS |
| AGAGAAGAAACAGGTGAAAA+TGG | 0.278783 | 6.3:+19230312 | MS.gene49837:CDS |
| GAAGAAGAGACAATTGCTTT+TGG | 0.285329 | 6.3:+19228707 | MS.gene49837:CDS |
| GAGCTGACTGCCTGTGTGAC+AGG | 0.320818 | 6.3:+19230071 | MS.gene49837:CDS |
| TTCAACAAGGCCCGACGAAA+TGG | 0.333605 | 6.3:+19230361 | MS.gene49837:CDS |
| TTCCGGCGTCGTAGGGAGTA+TGG | 0.335620 | 6.3:+19230175 | MS.gene49837:CDS |
| TCGTAGGGAGTATGGGGATT+CGG | 0.346943 | 6.3:+19230183 | MS.gene49837:CDS |
| CGTAGGGAGTATGGGGATTC+GGG | 0.362280 | 6.3:+19230184 | MS.gene49837:CDS |
| CGTCGGGCCTTGTTGAAAAT+GGG | 0.367667 | 6.3:-19230355 | None:intergenic |
| AGGAGATAATGAGCACTGAT+AGG | 0.373793 | 6.3:+19230263 | MS.gene49837:CDS |
| GCAAATCCCGCATCGGTTCC+CGG | 0.381852 | 6.3:-19228605 | None:intergenic |
| CTGCCTGTGTGACAGGGCTG+TGG | 0.382657 | 6.3:+19230078 | MS.gene49837:CDS |
| ACATGTCTTGGTGTCTGCTT+TGG | 0.395489 | 6.3:-19231023 | None:intergenic |
| TGAGGAAAGAGAGAAGAAAC+AGG | 0.406544 | 6.3:+19230303 | MS.gene49837:CDS |
| AGCGAACCGGAGTGTCTTGC+CGG | 0.407222 | 6.3:-19228582 | None:intergenic |
| TGCCTGTGTGACAGGGCTGT+GGG | 0.413208 | 6.3:+19230079 | MS.gene49837:CDS |
| TGTTGAAAATGGGTTGAGTT+TGG | 0.415709 | 6.3:-19230345 | None:intergenic |
| ATCACTAGGTTATTCATGTT+GGG | 0.420310 | 6.3:-19230388 | None:intergenic |
| TGTTGGGCTGCCCATTTCGT+CGG | 0.422265 | 6.3:-19230372 | None:intergenic |
| CATCGGTTCCCGGAGCGAAC+CGG | 0.422570 | 6.3:-19228595 | None:intergenic |
| TTCGCTCCGGGAACCGATGC+GGG | 0.428208 | 6.3:+19228599 | MS.gene49837:CDS |
| GTTGGGCTGCCCATTTCGTC+GGG | 0.428438 | 6.3:-19230371 | None:intergenic |
| TTGCGGTGGCTCTGATAAAC+CGG | 0.436816 | 6.3:+19228624 | MS.gene49837:CDS |
| TCCGGCGTCGTAGGGAGTAT+GGG | 0.439331 | 6.3:+19230176 | MS.gene49837:CDS |
| TCGCAAGGAGGACATGGTTC+CGG | 0.452736 | 6.3:+19230158 | MS.gene49837:CDS |
| TCAACAAGGCCCGACGAAAT+GGG | 0.467068 | 6.3:+19230362 | MS.gene49837:CDS |
| CAAGACACTCCGGTTCGCTC+CGG | 0.468163 | 6.3:+19228586 | MS.gene49837:CDS |
| GAAAATAAACTTACATGTCT+TGG | 0.474323 | 6.3:-19231035 | None:intergenic |
| GACATGGTTCCGGCGTCGTA+GGG | 0.480251 | 6.3:+19230168 | MS.gene49837:CDS |
| GGGAACCGATGCGGGATTTG+CGG | 0.480842 | 6.3:+19228607 | MS.gene49837:CDS |
| CCTGTGTGACAGGGCTGTGG+GGG | 0.484972 | 6.3:+19230081 | MS.gene49837:CDS |
| GCCTGTGTGACAGGGCTGTG+GGG | 0.487560 | 6.3:+19230080 | MS.gene49837:CDS |
| GATCACTAGGTTATTCATGT+TGG | 0.489715 | 6.3:-19230389 | None:intergenic |
| AAATTGGAAAGAATAGCATT+TGG | 0.489837 | 6.3:-19228731 | None:intergenic |
| GGCGTTTCTGTTCACATGAA+GGG | 0.490743 | 6.3:+19230205 | MS.gene49837:CDS |
| GGGCGTTTCTGTTCACATGA+AGG | 0.493783 | 6.3:+19230204 | MS.gene49837:CDS |
| AAGGAGAGAATGGAAAATGA+TGG | 0.497065 | 6.3:+19230121 | MS.gene49837:CDS |
| TGTCTTGCCGGAGGTTCTGC+AGG | 0.499340 | 6.3:-19228570 | None:intergenic |
| CTCTCGAGCTCGACCACGAA+AGG | 0.501709 | 6.3:+19230422 | MS.gene49837:CDS |
| AAGACACTCCGGTTCGCTCC+GGG | 0.502234 | 6.3:+19228587 | MS.gene49837:CDS |
| GAAGGGAGAGAAGGTCGAAC+GGG | 0.502901 | 6.3:+19230222 | MS.gene49837:CDS |
| CACATAGAAGCTGTAAAAGA+TGG | 0.503003 | 6.3:+19228677 | MS.gene49837:CDS |
| TTTGCAGAAGAGCAGAGAAA+AGG | 0.504558 | 6.3:+19230993 | MS.gene49837:intron |
| GTTGCATGAATTACCTTTCG+TGG | 0.506722 | 6.3:-19230435 | None:intergenic |
| TTGCAGGGAGAAGGAGAGAA+TGG | 0.508663 | 6.3:+19230111 | MS.gene49837:CDS |
| GGAAGCTTGTTGCAGGGAGA+AGG | 0.512104 | 6.3:+19230102 | MS.gene49837:CDS |
| ACTCAAAGGAACGGTTCCAT+TGG | 0.512544 | 6.3:+19228649 | MS.gene49837:CDS |
| GGACATGGTTCCGGCGTCGT+AGG | 0.514035 | 6.3:+19230167 | MS.gene49837:CDS |
| GAGTTTCAAGCAGGATCACT+AGG | 0.514309 | 6.3:-19230402 | None:intergenic |
| AGCTGACTGCCTGTGTGACA+GGG | 0.516825 | 6.3:+19230072 | MS.gene49837:CDS |
| CCATGTCCTCCTTGCGACGC+AGG | 0.517230 | 6.3:-19230152 | None:intergenic |
| CCCCATACTCCCTACGACGC+CGG | 0.521050 | 6.3:-19230177 | None:intergenic |
| GGAGATAATGAGCACTGATA+GGG | 0.523759 | 6.3:+19230264 | MS.gene49837:CDS |
| TTCTTTCTCCAGGTTTCAGG+TGG | 0.525073 | 6.3:+19231196 | MS.gene49837:intron |
| GAGGTTACCTGCAGAACCTC+CGG | 0.547107 | 6.3:+19228563 | MS.gene49837:CDS |
| CCCACATGATCAGGGTCTAG+TGG | 0.551331 | 6.3:+19230046 | MS.gene49837:intron |
| CCTGCGTCGCAAGGAGGACA+TGG | 0.553242 | 6.3:+19230152 | MS.gene49837:CDS |
| GCTTCTATGTGAGTTGCCAA+TGG | 0.562430 | 6.3:-19228665 | None:intergenic |
| CTGATAAACCGGAAACTCAA+AGG | 0.566977 | 6.3:+19228635 | MS.gene49837:CDS |
| GAGCACTGATAGGGTTGTCA+TGG | 0.570582 | 6.3:+19230273 | MS.gene49837:CDS |
| AGGTTCTGCAGGTAACCTCT+AGG | 0.573459 | 6.3:-19228559 | None:intergenic |
| GTTCGCTCCGGGAACCGATG+CGG | 0.577347 | 6.3:+19228598 | MS.gene49837:CDS |
| AACCGATGCGGGATTTGCGG+TGG | 0.578241 | 6.3:+19228610 | MS.gene49837:CDS |
| GCAGAAGAGCAGAGAAAAGG+AGG | 0.580483 | 6.3:+19230996 | MS.gene49837:intron |
| CCACATGATCAGGGTCTAGT+GGG | 0.586178 | 6.3:+19230047 | MS.gene49837:intron |
| GAACGGGTGAGAACGTCGCA+AGG | 0.586536 | 6.3:+19230238 | MS.gene49837:CDS |
| GAACCTCCGGCAAGACACTC+CGG | 0.589186 | 6.3:+19228576 | MS.gene49837:CDS |
| CGAGCTCGAGAGTTTCAAGC+AGG | 0.590787 | 6.3:-19230411 | None:intergenic |
| GGTGAGAACGTCGCAAGGAG+AGG | 0.591017 | 6.3:+19230243 | MS.gene49837:CDS |
| GGTTGTCATGGTACTAAGTG+AGG | 0.599630 | 6.3:+19230285 | MS.gene49837:CDS |
| CCGGCGTCGTAGGGAGTATG+GGG | 0.601322 | 6.3:+19230177 | MS.gene49837:CDS |
| GAGAAGATACCTGCGTCGCA+AGG | 0.602625 | 6.3:+19230143 | MS.gene49837:CDS |
| TGTTCACATGAAGGGAGAGA+AGG | 0.604171 | 6.3:+19230213 | MS.gene49837:CDS |
| CAGGTAACCTCTAGGAATTG+TGG | 0.613696 | 6.3:-19228551 | None:intergenic |
| TGAAGGGAGAGAAGGTCGAA+CGG | 0.625213 | 6.3:+19230221 | MS.gene49837:CDS |
| GAACCGGAGTGTCTTGCCGG+AGG | 0.630649 | 6.3:-19228579 | None:intergenic |
| AGCCACCGCAAATCCCGCAT+CGG | 0.636824 | 6.3:-19228612 | None:intergenic |
| AAACCGGAAACTCAAAGGAA+CGG | 0.659640 | 6.3:+19228640 | MS.gene49837:CDS |
| AAGATACCTGCGTCGCAAGG+AGG | 0.680917 | 6.3:+19230146 | MS.gene49837:CDS |
| TGACTCACCACAATTCCTAG+AGG | 0.721382 | 6.3:+19228544 | MS.gene49837:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTAAAAGTAAAAGAA+AGG | - | chr6.3:19228863-19228882 | None:intergenic | 15.0% |
| !! | AAACTCAAAATAATTGATAA+TGG | - | chr6.3:19228816-19228835 | None:intergenic | 15.0% |
| !! | ACAAGTTAAAACAATATAAA+AGG | - | chr6.3:19231144-19231163 | None:intergenic | 15.0% |
| !! | ATGATTTAAAAATCATAGAA+TGG | + | chr6.3:19229584-19229603 | MS.gene49837:intron | 15.0% |
| !! | ATTTCTCAATTATTAGTAAA+TGG | - | chr6.3:19230961-19230980 | None:intergenic | 15.0% |
| !! | TGATTTAAAAATCATAGAAT+GGG | + | chr6.3:19229585-19229604 | MS.gene49837:intron | 15.0% |
| !! | CACCAAATTTAAAAATAGTA+TGG | - | chr6.3:19229778-19229797 | None:intergenic | 20.0% |
| !! | GAAAGAAAGTAAACAAATAA+AGG | - | chr6.3:19231183-19231202 | None:intergenic | 20.0% |
| !! | TTAAAAATAGTATGGACAAA+GGG | - | chr6.3:19229770-19229789 | None:intergenic | 20.0% |
| !! | TTAGAAATTGAAAATGATAC+AGG | - | chr6.3:19229881-19229900 | None:intergenic | 20.0% |
| !! | TTCAATCACATTGATAAATT+AGG | + | chr6.3:19229047-19229066 | MS.gene49837:intron | 20.0% |
| !! | TTCAATTTCTAACCTAATTA+TGG | + | chr6.3:19229889-19229908 | MS.gene49837:intron | 20.0% |
| !! | TTCATTCACATGTTAAAATT+AGG | + | chr6.3:19229495-19229514 | MS.gene49837:intron | 20.0% |
| !! | TTTAAAAATAGTATGGACAA+AGG | - | chr6.3:19229771-19229790 | None:intergenic | 20.0% |
| !!! | AAAATAATTGATAATGGATG+AGG | - | chr6.3:19228810-19228829 | None:intergenic | 20.0% |
| !!! | ATTTTTAAATTTGGTGGTTT+CGG | + | chr6.3:19229782-19229801 | MS.gene49837:intron | 20.0% |
| !!! | CATACTATTTTTAAATTTGG+TGG | + | chr6.3:19229776-19229795 | MS.gene49837:intron | 20.0% |
| !!! | GTCCATACTATTTTTAAATT+TGG | + | chr6.3:19229773-19229792 | MS.gene49837:intron | 20.0% |
| ! | AAATTGGAAAGAATAGCATT+TGG | - | chr6.3:19228734-19228753 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | chr6.3:19229358-19229377 | MS.gene49837:intron | 25.0% |
| ! | ATGGATCAAATTACACAATA+AGG | - | chr6.3:19229408-19229427 | None:intergenic | 25.0% |
| ! | GAAAATAAACTTACATGTCT+TGG | - | chr6.3:19231038-19231057 | None:intergenic | 25.0% |
| ! | GATGAAGAAAAAGATATTGT+GGG | + | chr6.3:19229959-19229978 | MS.gene49837:intron | 25.0% |
| ! | TGATGAAGAAAAAGATATTG+TGG | + | chr6.3:19229958-19229977 | MS.gene49837:intron | 25.0% |
| !! | AATGCTATTCTTTCCAATTT+TGG | + | chr6.3:19228734-19228753 | MS.gene49837:CDS | 25.0% |
| !! | GTTGTTGTTATTGATAAATC+AGG | + | chr6.3:19229462-19229481 | MS.gene49837:intron | 25.0% |
| !! | TATGAGGTTGTATGTTATTT+AGG | + | chr6.3:19230585-19230604 | MS.gene49837:intron | 25.0% |
| !!! | GTCATAGATCATTGTTTTTA+TGG | - | chr6.3:19230917-19230936 | None:intergenic | 25.0% |
| !!! | TATTGTGGGTTTATTTTCAT+TGG | + | chr6.3:19229973-19229992 | MS.gene49837:intron | 25.0% |
| !!! | TATTTTAGAGAAGTGTGAAA+TGG | + | chr6.3:19229020-19229039 | MS.gene49837:intron | 25.0% |
| !!! | TTTCCAATTTTGGTCATAAT+TGG | + | chr6.3:19228744-19228763 | MS.gene49837:CDS | 25.0% |
| AATCATATCTCTCTCAAGAA+TGG | - | chr6.3:19229570-19229589 | None:intergenic | 30.0% | |
| AGATAAATCCAATGTGAAAG+AGG | + | chr6.3:19230021-19230040 | MS.gene49837:intron | 30.0% | |
| ATCACTAGGTTATTCATGTT+GGG | - | chr6.3:19230391-19230410 | None:intergenic | 30.0% | |
| ATCATATCTCTCTCAAGAAT+GGG | - | chr6.3:19229569-19229588 | None:intergenic | 30.0% | |
| CTTCCAATTATGACCAAAAT+TGG | - | chr6.3:19228750-19228769 | None:intergenic | 30.0% | |
| GTTCTGTCATAAACCATATT+TGG | - | chr6.3:19229386-19229405 | None:intergenic | 30.0% | |
| TAGTAAATGGCTCTTAACAT+TGG | - | chr6.3:19230948-19230967 | None:intergenic | 30.0% | |
| TTGTAAGTTAAATATGCCAG+TGG | - | chr6.3:19230762-19230781 | None:intergenic | 30.0% | |
| TTTGTTTACTTTCTTTCTCC+AGG | + | chr6.3:19231186-19231205 | MS.gene49837:intron | 30.0% | |
| ! | ATCTTTTTCTTCATCATCAC+CGG | - | chr6.3:19229954-19229973 | None:intergenic | 30.0% |
| ! | ATTAAGAAGAGTTGATCAGA+TGG | + | chr6.3:19229271-19229290 | MS.gene49837:intron | 30.0% |
| ! | ATTTTCATTGGACTCACTAT+GGG | + | chr6.3:19229985-19230004 | MS.gene49837:intron | 30.0% |
| ! | CTGAATAAACTTGCTTGTAA+TGG | - | chr6.3:19229522-19229541 | None:intergenic | 30.0% |
| ! | GGCATATTTAACTTACAAAC+TGG | + | chr6.3:19230764-19230783 | MS.gene49837:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | + | chr6.3:19229370-19229389 | MS.gene49837:intron | 30.0% |
| ! | TATTTTCATTGGACTCACTA+TGG | + | chr6.3:19229984-19230003 | MS.gene49837:intron | 30.0% |
| ! | TGTTGAGTTGTTTGTGAAAA+TGG | - | chr6.3:19229744-19229763 | None:intergenic | 30.0% |
| !!! | TTAGTTTGTTTTCAATCCAC+TGG | + | chr6.3:19230743-19230762 | MS.gene49837:intron | 30.0% |
| AAAATAGACTTGGGTGGTTT+GGG | + | chr6.3:19229219-19229238 | MS.gene49837:intron | 35.0% | |
| AAGGAGAGAATGGAAAATGA+TGG | + | chr6.3:19230121-19230140 | MS.gene49837:CDS | 35.0% | |
| ACTTGTAGTAGAAAAGATGG+TGG | + | chr6.3:19229196-19229215 | MS.gene49837:intron | 35.0% | |
| AGAATGGGTATAGAACTTAG+AGG | + | chr6.3:19229600-19229619 | MS.gene49837:intron | 35.0% | |
| AGAGAAGAAACAGGTGAAAA+TGG | + | chr6.3:19230312-19230331 | MS.gene49837:CDS | 35.0% | |
| AGCACTTGTAGTAGAAAAGA+TGG | + | chr6.3:19229193-19229212 | MS.gene49837:intron | 35.0% | |
| AGTAAGTGTGTAGAGAATTG+TGG | - | chr6.3:19229690-19229709 | None:intergenic | 35.0% | |
| AGTTTATTCAGCTGTTAAGG+AGG | + | chr6.3:19229531-19229550 | MS.gene49837:intron | 35.0% | |
| CAATGAAACACTAGAAGTGA+TGG | - | chr6.3:19231104-19231123 | None:intergenic | 35.0% | |
| CACATAGAAGCTGTAAAAGA+TGG | + | chr6.3:19228677-19228696 | MS.gene49837:CDS | 35.0% | |
| CCATAGAATCAACAACATTG+TGG | - | chr6.3:19229721-19229740 | None:intergenic | 35.0% | |
| CGAAATTAGAGAGATAGTTG+AGG | + | chr6.3:19229169-19229188 | MS.gene49837:intron | 35.0% | |
| CTAATTATGGTCCTGTCTAA+CGG | + | chr6.3:19229902-19229921 | MS.gene49837:intron | 35.0% | |
| CTCTTATTCACAACTACTTG+AGG | - | chr6.3:19229849-19229868 | None:intergenic | 35.0% | |
| CTGCAAATGCATACGAAAAT+TGG | - | chr6.3:19229638-19229657 | None:intergenic | 35.0% | |
| CTTAACTACACTACCAACAA+GGG | + | chr6.3:19230502-19230521 | MS.gene49837:intron | 35.0% | |
| CTTCAAACTGTTCTTTCTTC+TGG | + | chr6.3:19228770-19228789 | MS.gene49837:CDS | 35.0% | |
| GATCACTAGGTTATTCATGT+TGG | - | chr6.3:19230392-19230411 | None:intergenic | 35.0% | |
| GCAAGTTTATTCAGCTGTTA+AGG | + | chr6.3:19229528-19229547 | MS.gene49837:intron | 35.0% | |
| GCTATGAGCCAAATAATTGA+GGG | + | chr6.3:19230655-19230674 | MS.gene49837:intron | 35.0% | |
| GTTGTGAATAAGAGATCCTT+TGG | + | chr6.3:19229855-19229874 | MS.gene49837:intron | 35.0% | |
| GTTTATTCAGCTGTTAAGGA+GGG | + | chr6.3:19229532-19229551 | MS.gene49837:intron | 35.0% | |
| TACCAACAAGGGAATTGAAA+TGG | + | chr6.3:19230513-19230532 | MS.gene49837:intron | 35.0% | |
| TCGACTCAAATCTAACGTAA+GGG | + | chr6.3:19230701-19230720 | MS.gene49837:intron | 35.0% | |
| TCTTAACTACACTACCAACA+AGG | + | chr6.3:19230501-19230520 | MS.gene49837:intron | 35.0% | |
| TGCATATGCCCTCAATTATT+TGG | - | chr6.3:19230666-19230685 | None:intergenic | 35.0% | |
| TGCTATGAGCCAAATAATTG+AGG | + | chr6.3:19230654-19230673 | MS.gene49837:intron | 35.0% | |
| TGTAGTTAAGATCGAGTGAT+GGG | - | chr6.3:19230492-19230511 | None:intergenic | 35.0% | |
| TTCCATTTCAATTCCCTTGT+TGG | - | chr6.3:19230518-19230537 | None:intergenic | 35.0% | |
| TTGAAAATGATACAGGCCAA+AGG | - | chr6.3:19229874-19229893 | None:intergenic | 35.0% | |
| ! | AACTCAACCCATTTTCAACA+AGG | + | chr6.3:19230348-19230367 | MS.gene49837:CDS | 35.0% |
| ! | ATCGACTCAAATCTAACGTA+AGG | + | chr6.3:19230700-19230719 | MS.gene49837:intron | 35.0% |
| ! | ATGATGATGTTGTGTTGGAT+TGG | + | chr6.3:19229107-19229126 | MS.gene49837:intron | 35.0% |
| ! | CAATTTTCGTATGCATTTGC+AGG | + | chr6.3:19229636-19229655 | MS.gene49837:intron | 35.0% |
| ! | GAAGAAGAGACAATTGCTTT+TGG | + | chr6.3:19228707-19228726 | MS.gene49837:CDS | 35.0% |
| ! | GAGGTTGTATGTTATTTAGG+CGG | + | chr6.3:19230588-19230607 | MS.gene49837:intron | 35.0% |
| ! | TTATTTAGGCGGCAACTTTT+TGG | + | chr6.3:19230599-19230618 | MS.gene49837:intron | 35.0% |
| !! | AAGATGGTGGAAAATAGACT+TGG | + | chr6.3:19229209-19229228 | MS.gene49837:intron | 35.0% |
| !! | ACAAGTTTTATCCCACTAAG+TGG | - | chr6.3:19229440-19229459 | None:intergenic | 35.0% |
| !! | AGATGGTGGAAAATAGACTT+GGG | + | chr6.3:19229210-19229229 | MS.gene49837:intron | 35.0% |
| !! | CAAGTTTTATCCCACTAAGT+GGG | - | chr6.3:19229439-19229458 | None:intergenic | 35.0% |
| !! | CCACAATGTTGTTGATTCTA+TGG | + | chr6.3:19229718-19229737 | MS.gene49837:intron | 35.0% |
| !! | TGTTGAAAATGGGTTGAGTT+TGG | - | chr6.3:19230348-19230367 | None:intergenic | 35.0% |
| !!! | CACCGAATCTAGTTTTTTTC+CGG | - | chr6.3:19229814-19229833 | None:intergenic | 35.0% |
| AAACCGGAAACTCAAAGGAA+CGG | + | chr6.3:19228640-19228659 | MS.gene49837:CDS | 40.0% | |
| ACTTTCTTTCTCCAGGTTTC+AGG | + | chr6.3:19231193-19231212 | MS.gene49837:intron | 40.0% | |
| AGTCAGATTACAAGAGGTAG+AGG | + | chr6.3:19229299-19229318 | MS.gene49837:intron | 40.0% | |
| ATACGCCACAAATCCTACTA+GGG | + | chr6.3:19230540-19230559 | MS.gene49837:intron | 40.0% | |
| CGGAAAAAAACTAGATTCGG+TGG | + | chr6.3:19229812-19229831 | MS.gene49837:intron | 40.0% | |
| CGTTAGACAGGACCATAATT+AGG | - | chr6.3:19229904-19229923 | None:intergenic | 40.0% | |
| CTGATAAACCGGAAACTCAA+AGG | + | chr6.3:19228635-19228654 | MS.gene49837:CDS | 40.0% | |
| GAAAATAGACTTGGGTGGTT+TGG | + | chr6.3:19229218-19229237 | MS.gene49837:intron | 40.0% | |
| GAGGATAGTCAGATTACAAG+AGG | + | chr6.3:19229293-19229312 | MS.gene49837:intron | 40.0% | |
| GGCCGGAAAAAAACTAGATT+CGG | + | chr6.3:19229809-19229828 | MS.gene49837:intron | 40.0% | |
| GTGTAGTTAAGATCGAGTGA+TGG | - | chr6.3:19230493-19230512 | None:intergenic | 40.0% | |
| GTTGCATGAATTACCTTTCG+TGG | - | chr6.3:19230438-19230457 | None:intergenic | 40.0% | |
| TATACGCCACAAATCCTACT+AGG | + | chr6.3:19230539-19230558 | MS.gene49837:intron | 40.0% | |
| TGAGGAAAGAGAGAAGAAAC+AGG | + | chr6.3:19230303-19230322 | MS.gene49837:CDS | 40.0% | |
| TTTCACCCTAGTAGGATTTG+TGG | - | chr6.3:19230548-19230567 | None:intergenic | 40.0% | |
| TTTCGTATGCATTTGCAGGT+AGG | + | chr6.3:19229640-19229659 | MS.gene49837:intron | 40.0% | |
| TTTGCAGAAGAGCAGAGAAA+AGG | + | chr6.3:19230993-19231012 | MS.gene49837:intron | 40.0% | |
| ! | AAGAAGAGTTGATCAGATGG+AGG | + | chr6.3:19229274-19229293 | MS.gene49837:intron | 40.0% |
| ! | CGAAGATGATGATGTTGTGT+TGG | + | chr6.3:19229102-19229121 | MS.gene49837:intron | 40.0% |
| ! | TTTTATCCCACTAAGTGGGT+TGG | - | chr6.3:19229435-19229454 | None:intergenic | 40.0% |
| !! | AGGAGATAATGAGCACTGAT+AGG | + | chr6.3:19230263-19230282 | MS.gene49837:CDS | 40.0% |
| !! | GGAGATAATGAGCACTGATA+GGG | + | chr6.3:19230264-19230283 | MS.gene49837:CDS | 40.0% |
| ACTCAAAGGAACGGTTCCAT+TGG | + | chr6.3:19228649-19228668 | MS.gene49837:CDS | 45.0% | |
| ATCGCAACACGAATCCATGA+GGG | + | chr6.3:19230463-19230482 | MS.gene49837:intron | 45.0% | |
| ATGTAGCCAACCCACTTAGT+GGG | + | chr6.3:19229426-19229445 | MS.gene49837:intron | 45.0% | |
| ATTATGGTCCTGTCTAACGG+CGG | + | chr6.3:19229905-19229924 | MS.gene49837:intron | 45.0% | |
| ATTGGACTCACTATGGGAAG+AGG | + | chr6.3:19229991-19230010 | MS.gene49837:intron | 45.0% | |
| GAGTTTCAAGCAGGATCACT+AGG | - | chr6.3:19230405-19230424 | None:intergenic | 45.0% | |
| GCTTCTATGTGAGTTGCCAA+TGG | - | chr6.3:19228668-19228687 | None:intergenic | 45.0% | |
| GGATGTGTGGTAAGACTAGT+CGG | + | chr6.3:19229128-19229147 | MS.gene49837:intron | 45.0% | |
| GGCGTTTCTGTTCACATGAA+GGG | + | chr6.3:19230205-19230224 | MS.gene49837:CDS | 45.0% | |
| GGGTATAGAACTTAGAGGCA+AGG | + | chr6.3:19229605-19229624 | MS.gene49837:intron | 45.0% | |
| GGTTGTCATGGTACTAAGTG+AGG | + | chr6.3:19230285-19230304 | MS.gene49837:CDS | 45.0% | |
| TGACTCACCACAATTCCTAG+AGG | + | chr6.3:19228544-19228563 | MS.gene49837:CDS | 45.0% | |
| TGGTGGAAAATAGACTTGGG+TGG | + | chr6.3:19229213-19229232 | MS.gene49837:intron | 45.0% | |
| TGTTCACATGAAGGGAGAGA+AGG | + | chr6.3:19230213-19230232 | MS.gene49837:CDS | 45.0% | |
| TTCTTTCTCCAGGTTTCAGG+TGG | + | chr6.3:19231196-19231215 | MS.gene49837:intron | 45.0% | |
| ! | AAATTTGGTGGTTTCGGCAG+AGG | + | chr6.3:19229788-19229807 | MS.gene49837:intron | 45.0% |
| ! | ATGTGTGGTAAGACTAGTCG+GGG | + | chr6.3:19229130-19229149 | MS.gene49837:intron | 45.0% |
| ! | CAGGTAACCTCTAGGAATTG+TGG | - | chr6.3:19228554-19228573 | None:intergenic | 45.0% |
| ! | GAACCGTTCCTTTGAGTTTC+CGG | - | chr6.3:19228646-19228665 | None:intergenic | 45.0% |
| ! | GATGTGTGGTAAGACTAGTC+GGG | + | chr6.3:19229129-19229148 | MS.gene49837:intron | 45.0% |
| ! | GTTGTGTTGGATTGGATGTG+TGG | + | chr6.3:19229115-19229134 | MS.gene49837:intron | 45.0% |
| !! | ACATGTCTTGGTGTCTGCTT+TGG | - | chr6.3:19231026-19231045 | None:intergenic | 45.0% |
| AAAGAGGAGCCCACATGATC+AGG | + | chr6.3:19230037-19230056 | MS.gene49837:intron | 50.0% | |
| AAGAGGAGCCCACATGATCA+GGG | + | chr6.3:19230038-19230057 | MS.gene49837:intron | 50.0% | |
| AGGTTCTGCAGGTAACCTCT+AGG | - | chr6.3:19228562-19228581 | None:intergenic | 50.0% | |
| CATGTAGCCAACCCACTTAG+TGG | + | chr6.3:19229425-19229444 | MS.gene49837:intron | 50.0% | |
| CCACATGATCAGGGTCTAGT+GGG | + | chr6.3:19230047-19230066 | MS.gene49837:intron | 50.0% | |
| CCACTAGACCCTGATCATGT+GGG | - | chr6.3:19230049-19230068 | None:intergenic | 50.0% | |
| GATCGCAACACGAATCCATG+AGG | + | chr6.3:19230462-19230481 | MS.gene49837:intron | 50.0% | |
| GCAGAAGAGCAGAGAAAAGG+AGG | + | chr6.3:19230996-19231015 | MS.gene49837:intron | 50.0% | |
| GGGCGTTTCTGTTCACATGA+AGG | + | chr6.3:19230204-19230223 | MS.gene49837:CDS | 50.0% | |
| TCAACAAGGCCCGACGAAAT+GGG | + | chr6.3:19230362-19230381 | MS.gene49837:CDS | 50.0% | |
| TGAAGGGAGAGAAGGTCGAA+CGG | + | chr6.3:19230221-19230240 | MS.gene49837:CDS | 50.0% | |
| TGGATTCGTGTTGCGATCAG+AGG | - | chr6.3:19230460-19230479 | None:intergenic | 50.0% | |
| TGTGGGCTCCTCTTTCACAT+TGG | - | chr6.3:19230032-19230051 | None:intergenic | 50.0% | |
| TTCAACAAGGCCCGACGAAA+TGG | + | chr6.3:19230361-19230380 | MS.gene49837:CDS | 50.0% | |
| TTGCAGGGAGAAGGAGAGAA+TGG | + | chr6.3:19230111-19230130 | MS.gene49837:CDS | 50.0% | |
| ! | GCTAGGGTTTTCACCCTAGT+AGG | - | chr6.3:19230556-19230575 | None:intergenic | 50.0% |
| ! | TCGTAGGGAGTATGGGGATT+CGG | + | chr6.3:19230183-19230202 | MS.gene49837:CDS | 50.0% |
| !! | CACTAAGTGGGTTGGCTACA+TGG | - | chr6.3:19229427-19229446 | None:intergenic | 50.0% |
| !! | CGTCGGGCCTTGTTGAAAAT+GGG | - | chr6.3:19230358-19230377 | None:intergenic | 50.0% |
| !! | GAGCACTGATAGGGTTGTCA+TGG | + | chr6.3:19230273-19230292 | MS.gene49837:CDS | 50.0% |
| !! | TCGTCGGGCCTTGTTGAAAA+TGG | - | chr6.3:19230359-19230378 | None:intergenic | 50.0% |
| !! | TTGCGGTGGCTCTGATAAAC+CGG | + | chr6.3:19228624-19228643 | MS.gene49837:CDS | 50.0% |
| AAGATACCTGCGTCGCAAGG+AGG | + | chr6.3:19230146-19230165 | MS.gene49837:CDS | 55.0% | |
| ACCTCATACGACGCTCTGCT+AGG | - | chr6.3:19230573-19230592 | None:intergenic | 55.0% | |
| AGCTGACTGCCTGTGTGACA+GGG | + | chr6.3:19230072-19230091 | MS.gene49837:CDS | 55.0% | |
| CAGAACAACCGCCGTTAGAC+AGG | - | chr6.3:19229916-19229935 | None:intergenic | 55.0% | |
| CCCACATGATCAGGGTCTAG+TGG | + | chr6.3:19230046-19230065 | MS.gene49837:intron | 55.0% | |
| CCCACTAGACCCTGATCATG+TGG | - | chr6.3:19230050-19230069 | None:intergenic | 55.0% | |
| CCTCATACGACGCTCTGCTA+GGG | - | chr6.3:19230572-19230591 | None:intergenic | 55.0% | |
| CGAGCTCGAGAGTTTCAAGC+AGG | - | chr6.3:19230414-19230433 | None:intergenic | 55.0% | |
| CTGTCTAACGGCGGTTGTTC+TGG | + | chr6.3:19229914-19229933 | MS.gene49837:intron | 55.0% | |
| GAAGGGAGAGAAGGTCGAAC+GGG | + | chr6.3:19230222-19230241 | MS.gene49837:CDS | 55.0% | |
| GAGAAGATACCTGCGTCGCA+AGG | + | chr6.3:19230143-19230162 | MS.gene49837:CDS | 55.0% | |
| GAGGTTACCTGCAGAACCTC+CGG | + | chr6.3:19228563-19228582 | MS.gene49837:CDS | 55.0% | |
| TCGCAAGGAGGACATGGTTC+CGG | + | chr6.3:19230158-19230177 | MS.gene49837:CDS | 55.0% | |
| TCTAACGGCGGTTGTTCTGG+TGG | + | chr6.3:19229917-19229936 | MS.gene49837:intron | 55.0% | |
| TGTTGGGCTGCCCATTTCGT+CGG | - | chr6.3:19230375-19230394 | None:intergenic | 55.0% | |
| ! | ACTTGGGTGGTTTGGGCATG+TGG | + | chr6.3:19229226-19229245 | MS.gene49837:intron | 55.0% |
| ! | CGTAGGGAGTATGGGGATTC+GGG | + | chr6.3:19230184-19230203 | MS.gene49837:CDS | 55.0% |
| !! | GGAAGCTTGTTGCAGGGAGA+AGG | + | chr6.3:19230102-19230121 | MS.gene49837:CDS | 55.0% |
| !! | TGTGGGGGAAGCTTGTTGCA+GGG | + | chr6.3:19230096-19230115 | MS.gene49837:CDS | 55.0% |
| AACCGATGCGGGATTTGCGG+TGG | + | chr6.3:19228610-19228629 | MS.gene49837:CDS | 60.0% | |
| AACGGCGGTTGTTCTGGTGG+AGG | + | chr6.3:19229920-19229939 | MS.gene49837:intron | 60.0% | |
| ACGGCGGTTGTTCTGGTGGA+GGG | + | chr6.3:19229921-19229940 | MS.gene49837:intron | 60.0% | |
| AGCCACCGCAAATCCCGCAT+CGG | - | chr6.3:19228615-19228634 | None:intergenic | 60.0% | |
| CTCTCGAGCTCGACCACGAA+AGG | + | chr6.3:19230422-19230441 | MS.gene49837:CDS | 60.0% | |
| GAACCTCCGGCAAGACACTC+CGG | + | chr6.3:19228576-19228595 | MS.gene49837:CDS | 60.0% | |
| GAACGGGTGAGAACGTCGCA+AGG | + | chr6.3:19230238-19230257 | MS.gene49837:CDS | 60.0% | |
| GACATGGTTCCGGCGTCGTA+GGG | + | chr6.3:19230168-19230187 | MS.gene49837:CDS | 60.0% | |
| GAGCTGACTGCCTGTGTGAC+AGG | + | chr6.3:19230071-19230090 | MS.gene49837:CDS | 60.0% | |
| GGGAACCGATGCGGGATTTG+CGG | + | chr6.3:19228607-19228626 | MS.gene49837:CDS | 60.0% | |
| GGTGAGAACGTCGCAAGGAG+AGG | + | chr6.3:19230243-19230262 | MS.gene49837:CDS | 60.0% | |
| GTTGGGCTGCCCATTTCGTC+GGG | - | chr6.3:19230374-19230393 | None:intergenic | 60.0% | |
| TCTGGTGGAGGGCTCACAAC+CGG | + | chr6.3:19229932-19229951 | MS.gene49837:intron | 60.0% | |
| TGCCTGTGTGACAGGGCTGT+GGG | + | chr6.3:19230079-19230098 | MS.gene49837:CDS | 60.0% | |
| TGTCTTGCCGGAGGTTCTGC+AGG | - | chr6.3:19228573-19228592 | None:intergenic | 60.0% | |
| TTCCGGCGTCGTAGGGAGTA+TGG | + | chr6.3:19230175-19230194 | MS.gene49837:CDS | 60.0% | |
| ! | AAGACACTCCGGTTCGCTCC+GGG | + | chr6.3:19228587-19228606 | MS.gene49837:CDS | 60.0% |
| ! | AGCGAACCGGAGTGTCTTGC+CGG | - | chr6.3:19228585-19228604 | None:intergenic | 60.0% |
| ! | CAAGACACTCCGGTTCGCTC+CGG | + | chr6.3:19228586-19228605 | MS.gene49837:CDS | 60.0% |
| ! | TCCGGCGTCGTAGGGAGTAT+GGG | + | chr6.3:19230176-19230195 | MS.gene49837:CDS | 60.0% |
| ! | TTGGTGGTTTCGGCAGAGGC+CGG | + | chr6.3:19229792-19229811 | MS.gene49837:intron | 60.0% |
| !! | CCCTAGCAGAGCGTCGTATG+AGG | + | chr6.3:19230569-19230588 | MS.gene49837:intron | 60.0% |
| !! | CGAGTGATGGGTCACCCTCA+TGG | - | chr6.3:19230480-19230499 | None:intergenic | 60.0% |
| !! | CTGTGGGGGAAGCTTGTTGC+AGG | + | chr6.3:19230095-19230114 | MS.gene49837:CDS | 60.0% |
| !! | GCAAATCCCGCATCGGTTCC+CGG | - | chr6.3:19228608-19228627 | None:intergenic | 60.0% |
| CCATGTCCTCCTTGCGACGC+AGG | - | chr6.3:19230155-19230174 | None:intergenic | 65.0% | |
| CCCCATACTCCCTACGACGC+CGG | - | chr6.3:19230180-19230199 | None:intergenic | 65.0% | |
| CCTGCGTCGCAAGGAGGACA+TGG | + | chr6.3:19230152-19230171 | MS.gene49837:CDS | 65.0% | |
| CCTGTGTGACAGGGCTGTGG+GGG | + | chr6.3:19230081-19230100 | MS.gene49837:CDS | 65.0% | |
| CTGCCTGTGTGACAGGGCTG+TGG | + | chr6.3:19230078-19230097 | MS.gene49837:CDS | 65.0% | |
| GCCTGTGTGACAGGGCTGTG+GGG | + | chr6.3:19230080-19230099 | MS.gene49837:CDS | 65.0% | |
| GGACATGGTTCCGGCGTCGT+AGG | + | chr6.3:19230167-19230186 | MS.gene49837:CDS | 65.0% | |
| GTTCGCTCCGGGAACCGATG+CGG | + | chr6.3:19228598-19228617 | MS.gene49837:CDS | 65.0% | |
| TTCGCTCCGGGAACCGATGC+GGG | + | chr6.3:19228599-19228618 | MS.gene49837:CDS | 65.0% | |
| ! | CCGGCGTCGTAGGGAGTATG+GGG | + | chr6.3:19230177-19230196 | MS.gene49837:CDS | 65.0% |
| ! | GAACCGGAGTGTCTTGCCGG+AGG | - | chr6.3:19228582-19228601 | None:intergenic | 65.0% |
| !! | CATCGGTTCCCGGAGCGAAC+CGG | - | chr6.3:19228598-19228617 | None:intergenic | 65.0% |
| CCCCCACAGCCCTGTCACAC+AGG | - | chr6.3:19230084-19230103 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 19228527 | 19231221 | 19228527 | ID=MS.gene49837 |
| chr6.3 | mRNA | 19228527 | 19231221 | 19228527 | ID=MS.gene49837.t1;Parent=MS.gene49837 |
| chr6.3 | exon | 19228527 | 19228791 | 19228527 | ID=MS.gene49837.t1.exon1;Parent=MS.gene49837.t1 |
| chr6.3 | CDS | 19228527 | 19228791 | 19228527 | ID=cds.MS.gene49837.t1;Parent=MS.gene49837.t1 |
| chr6.3 | exon | 19230059 | 19230443 | 19230059 | ID=MS.gene49837.t1.exon2;Parent=MS.gene49837.t1 |
| chr6.3 | CDS | 19230059 | 19230443 | 19230059 | ID=cds.MS.gene49837.t1;Parent=MS.gene49837.t1 |
| chr6.3 | exon | 19231000 | 19231043 | 19231000 | ID=MS.gene49837.t1.exon3;Parent=MS.gene49837.t1 |
| chr6.3 | CDS | 19231000 | 19231043 | 19231000 | ID=cds.MS.gene49837.t1;Parent=MS.gene49837.t1 |
| chr6.3 | exon | 19231208 | 19231221 | 19231208 | ID=MS.gene49837.t1.exon4;Parent=MS.gene49837.t1 |
| chr6.3 | CDS | 19231208 | 19231221 | 19231208 | ID=cds.MS.gene49837.t1;Parent=MS.gene49837.t1 |
| Gene Sequence |
| Protein sequence |
