Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056315.t1 | XP_003621523.1 | 97.7 | 217 | 5 | 0 | 1 | 217 | 1 | 217 | 1.70E-118 | 435.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056315.t1 | P39598 | 22.9 | 201 | 141 | 5 | 14 | 211 | 3 | 192 | 2.1e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056315.t1 | G7KR18 | 97.7 | 217 | 5 | 0 | 1 | 217 | 1 | 217 | 1.2e-118 | 435.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054892 | MS.gene056315 | 0.801988 | 6.94E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene062512 | 0.80071 | 1.27E-48 | -1.69E-46 |
| MS.gene056315 | MS.gene064969 | 0.822736 | 2.02E-53 | -1.69E-46 |
| MS.gene056315 | MS.gene066513 | 0.828856 | 7.12E-55 | -1.69E-46 |
| MS.gene056315 | MS.gene32801 | 0.824108 | 9.65E-54 | -1.69E-46 |
| MS.gene056315 | MS.gene34078 | 0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene37412 | 0.801331 | 9.47E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene41022 | 0.802928 | 4.44E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene49837 | 0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene51957 | 0.806037 | 9.99E-50 | -1.69E-46 |
| MS.gene056315 | MS.gene55545 | 0.824204 | 9.16E-54 | -1.69E-46 |
| MS.gene056315 | MS.gene59086 | 0.803438 | 3.49E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene62461 | 0.802775 | 4.78E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene78773 | 0.80258 | 5.24E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene92775 | 0.80226 | 6.11E-49 | -1.69E-46 |
| MS.gene056315 | MS.gene96344 | 0.805359 | 1.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056315.t1 | MTR_7g016650 | 97.696 | 217 | 5 | 0 | 1 | 217 | 47 | 263 | 1.13e-161 | 447 |
| MS.gene056315.t1 | MTR_7g016650 | 97.696 | 217 | 5 | 0 | 1 | 217 | 1 | 217 | 1.16e-161 | 445 |
| MS.gene056315.t1 | MTR_7g016650 | 96.023 | 176 | 7 | 0 | 1 | 176 | 47 | 222 | 1.42e-127 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056315.t1 | AT5G38900 | 63.134 | 217 | 80 | 0 | 1 | 217 | 1 | 217 | 3.11e-104 | 300 |
| MS.gene056315.t1 | AT5G38900 | 63.134 | 217 | 80 | 0 | 1 | 217 | 20 | 236 | 5.53e-104 | 300 |
Find 54 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACCTACCACATAATA+TGG | 0.208418 | 7.3:+81828172 | None:intergenic |
| TTTGTATTTGGCAGGTCTTC+AGG | 0.270609 | 7.3:-81829889 | MS.gene056315:intron |
| AACTGAATTCACAGATAATA+TGG | 0.282529 | 7.3:-81830129 | MS.gene056315:intron |
| ATGCCTTCTTTAGGGGCATC+AGG | 0.331747 | 7.3:+81830088 | None:intergenic |
| GCTGCCAAGGTTGGTATAGA+AGG | 0.357138 | 7.3:-81828684 | MS.gene056315:CDS |
| TGGGTGCAGGAAGTTTCTTC+TGG | 0.368277 | 7.3:-81828712 | MS.gene056315:intron |
| CTCACACAGGGGAAACACTA+TGG | 0.380886 | 7.3:-81829497 | MS.gene056315:intron |
| CAAAGCCATAGCTTCATCTA+AGG | 0.399551 | 7.3:-81830405 | MS.gene056315:CDS |
| ACATACTCAAGAAACATTAC+AGG | 0.414741 | 7.3:-81828199 | MS.gene056315:CDS |
| GGCATCAGGGTTGAGTTGAT+AGG | 0.417949 | 7.3:+81830102 | None:intergenic |
| TACCTCTTTGAGCCCATTGT+TGG | 0.425675 | 7.3:+81828638 | None:intergenic |
| GTATGTCCATGGTGCTTTGT+TGG | 0.432542 | 7.3:-81830443 | MS.gene056315:CDS |
| ACCTCTTTGAGCCCATTGTT+GGG | 0.440357 | 7.3:+81828639 | None:intergenic |
| CTCTTAATCTTACGTGAGTC+CGG | 0.452807 | 7.3:+81829841 | None:intergenic |
| TTCTTAAGAATCCCAACAAT+GGG | 0.457484 | 7.3:-81828650 | MS.gene056315:CDS |
| CTAGTTGAAGAACTTGGCCT+TGG | 0.460943 | 7.3:-81829418 | MS.gene056315:CDS |
| CTAAAGAAGGCATTGAAAAG+AGG | 0.467080 | 7.3:-81830078 | MS.gene056315:CDS |
| CTGGAAGCTGCTGCCAAGGT+TGG | 0.471286 | 7.3:-81828693 | MS.gene056315:CDS |
| TCTTCTGGAAGCTGCTGCCA+AGG | 0.472718 | 7.3:-81828697 | MS.gene056315:CDS |
| AAAGCTCTCAAGAAGACCTC+AGG | 0.489445 | 7.3:+81828047 | None:intergenic |
| GGTCTTGTCTATAGTTTGTC+CGG | 0.489528 | 7.3:-81829860 | MS.gene056315:CDS |
| CATGATCTAGTTGAAGAACT+TGG | 0.490582 | 7.3:-81829424 | MS.gene056315:CDS |
| TATCAGAACTAATATCAATT+CGG | 0.492334 | 7.3:+81830468 | None:intergenic |
| TAAGGACAAATACAACTTTG+AGG | 0.502225 | 7.3:-81830387 | MS.gene056315:intron |
| TGCCTTCTTTAGGGGCATCA+GGG | 0.510379 | 7.3:+81830089 | None:intergenic |
| AGCTTCCATCTGATCCGATC+GGG | 0.511003 | 7.3:+81830030 | None:intergenic |
| TTTGTCCTTAGATGAAGCTA+TGG | 0.517732 | 7.3:+81830400 | None:intergenic |
| AAAGTCAACTTGTAGCAGCT+TGG | 0.525306 | 7.3:+81828024 | None:intergenic |
| TGCCCCTTCTATACCAACCT+TGG | 0.525930 | 7.3:+81828680 | None:intergenic |
| CTGCCAAGGTTGGTATAGAA+GGG | 0.531395 | 7.3:-81828683 | MS.gene056315:CDS |
| AACCCTGATGCCCCTAAAGA+AGG | 0.532587 | 7.3:-81830091 | MS.gene056315:CDS |
| TACAGGGGTTCCATATTATG+TGG | 0.537587 | 7.3:-81828182 | MS.gene056315:intron |
| GGTTGGTATAGAAGGGGCAG+AGG | 0.538745 | 7.3:-81828676 | MS.gene056315:CDS |
| TAAAGAAGGCATTGAAAAGA+GGG | 0.544653 | 7.3:-81830077 | MS.gene056315:CDS |
| TGGCCTTGGTTATTTCACTC+AGG | 0.553393 | 7.3:-81829404 | MS.gene056315:CDS |
| GCATCAGGGTTGAGTTGATA+GGG | 0.561430 | 7.3:+81830103 | None:intergenic |
| TGGCAGGTCTTCAGGACAGT+CGG | 0.569805 | 7.3:-81829881 | MS.gene056315:intron |
| CATACTCAAGAAACATTACA+GGG | 0.572031 | 7.3:-81828198 | MS.gene056315:CDS |
| TGGATCCCGATCGGATCAGA+TGG | 0.574844 | 7.3:-81830035 | MS.gene056315:CDS |
| TTTCTTAAGAATCCCAACAA+TGG | 0.583420 | 7.3:-81828651 | MS.gene056315:CDS |
| AAGCTCTCAAGAAGACCTCA+GGG | 0.583553 | 7.3:+81828048 | None:intergenic |
| GATCGGATCAGATGGAAGCT+CGG | 0.589713 | 7.3:-81830027 | MS.gene056315:CDS |
| GAAACACTATGGACAGCCAC+AGG | 0.602840 | 7.3:-81829486 | MS.gene056315:CDS |
| GAGCTTCCATCTGATCCGAT+CGG | 0.606935 | 7.3:+81830029 | None:intergenic |
| TTTCCTGAGTGAAATAACCA+AGG | 0.628300 | 7.3:+81829401 | None:intergenic |
| AAGCAAGTTTGGATCCCGAT+CGG | 0.629054 | 7.3:-81830044 | MS.gene056315:CDS |
| TGCCAAGGTTGGTATAGAAG+GGG | 0.641897 | 7.3:-81828682 | MS.gene056315:CDS |
| GATGGAAGCTCGGATGTCAG+AGG | 0.645696 | 7.3:-81830017 | MS.gene056315:intron |
| TCCCAACAATGGGCTCAAAG+AGG | 0.647198 | 7.3:-81828640 | MS.gene056315:intron |
| GCTCTCAAGAAGACCTCAGG+GGG | 0.652062 | 7.3:+81828050 | None:intergenic |
| GTTCTGATACTGTATGTCCA+TGG | 0.654611 | 7.3:-81830454 | MS.gene056315:CDS |
| TAGAAAAGTATACAAGCCTG+TGG | 0.686315 | 7.3:+81829470 | None:intergenic |
| AGCTCTCAAGAAGACCTCAG+GGG | 0.734602 | 7.3:+81828049 | None:intergenic |
| ATACTCAAGAAACATTACAG+GGG | 0.775618 | 7.3:-81828197 | MS.gene056315:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTATAAACTTTAAA+AGG | + | chr7.3:81830025-81830044 | None:intergenic | 10.0% |
| !!! | TTTTAAAGTTTATAACAAAT+TGG | - | chr7.3:81830024-81830043 | MS.gene056315:CDS | 10.0% |
| !! | AAAAAAGCTAAATTTAACTA+AGG | + | chr7.3:81829430-81829449 | None:intergenic | 15.0% |
| !! | AATATGAAAACTACAAAAAT+AGG | - | chr7.3:81829464-81829483 | MS.gene056315:CDS | 15.0% |
| !!! | TATTATTTCCATTTTGTATT+TGG | - | chr7.3:81828636-81828655 | MS.gene056315:intron | 15.0% |
| !!! | TTATTCATTTTACAGATTAA+TGG | - | chr7.3:81830439-81830458 | MS.gene056315:CDS | 15.0% |
| !! | AATAAGATACATTAAGCATT+TGG | + | chr7.3:81830002-81830021 | None:intergenic | 20.0% |
| !! | ATGCATTAAATAAAGCATAA+AGG | + | chr7.3:81829949-81829968 | None:intergenic | 20.0% |
| !! | CTATATATCAATATGGATTT+CGG | - | chr7.3:81829320-81829339 | MS.gene056315:intron | 20.0% |
| !! | TAGATAGCTATATATCAATA+TGG | - | chr7.3:81829313-81829332 | MS.gene056315:intron | 20.0% |
| !! | TATCAGAACTAATATCAATT+CGG | + | chr7.3:81828072-81828091 | None:intergenic | 20.0% |
| ! | AAAATGACTAGCAACTAAAA+TGG | + | chr7.3:81830058-81830077 | None:intergenic | 25.0% |
| ! | AAACTACAAAAATAGGATGA+TGG | - | chr7.3:81829471-81829490 | MS.gene056315:CDS | 25.0% |
| ! | AACTGAATTCACAGATAATA+TGG | - | chr7.3:81828408-81828427 | MS.gene056315:intron | 25.0% |
| ! | AATGCATATGATATCTATTG+TGG | + | chr7.3:81830230-81830249 | None:intergenic | 25.0% |
| ! | AATGGAAGTCAAAAATTAAG+CGG | - | chr7.3:81830457-81830476 | MS.gene056315:CDS | 25.0% |
| ! | AGCTAACTTCAAATAGTTTA+CGG | - | chr7.3:81828843-81828862 | MS.gene056315:intron | 25.0% |
| ! | GTTATAGCATTATAGTGTAA+CGG | - | chr7.3:81828318-81828337 | MS.gene056315:intron | 25.0% |
| ! | TTCACTCAGGAAAAATATAT+TGG | - | chr7.3:81829146-81829165 | MS.gene056315:intron | 25.0% |
| !! | AGGCATTATCCTTTTAAATT+TGG | - | chr7.3:81829805-81829824 | MS.gene056315:intron | 25.0% |
| !! | CATTCATATAAAGTACTTAC+TGG | + | chr7.3:81829175-81829194 | None:intergenic | 25.0% |
| !! | GGCATTATCCTTTTAAATTT+GGG | - | chr7.3:81829806-81829825 | MS.gene056315:intron | 25.0% |
| !! | TTTTCTGTAATTGACAATAC+AGG | - | chr7.3:81828359-81828378 | MS.gene056315:intron | 25.0% |
| !!! | TACGCTTTTTATTACAAAAG+TGG | - | chr7.3:81828294-81828313 | MS.gene056315:intron | 25.0% |
| AAATGTGTCTTTCGTTAGTT+TGG | + | chr7.3:81829607-81829626 | None:intergenic | 30.0% | |
| AAATTGATTGAGAGAGCTTA+TGG | + | chr7.3:81828887-81828906 | None:intergenic | 30.0% | |
| ACATACTCAAGAAACATTAC+AGG | - | chr7.3:81830338-81830357 | MS.gene056315:intron | 30.0% | |
| ACTAAGTACTTTATCCAAAC+AGG | + | chr7.3:81828751-81828770 | None:intergenic | 30.0% | |
| ATACTCAAGAAACATTACAG+GGG | - | chr7.3:81830340-81830359 | MS.gene056315:intron | 30.0% | |
| ATTAACGAAAGACACATTTG+AGG | - | chr7.3:81829580-81829599 | MS.gene056315:intron | 30.0% | |
| CATACTCAAGAAACATTACA+GGG | - | chr7.3:81830339-81830358 | MS.gene056315:intron | 30.0% | |
| CATATGATATCTATTGTGGT+AGG | + | chr7.3:81830226-81830245 | None:intergenic | 30.0% | |
| CTTTCAGTGTTGTCAAATAA+CGG | - | chr7.3:81828224-81828243 | MS.gene056315:intron | 30.0% | |
| GAACTAGATTATAAGACACT+TGG | + | chr7.3:81829771-81829790 | None:intergenic | 30.0% | |
| TAAGGACAAATACAACTTTG+AGG | - | chr7.3:81828150-81828169 | MS.gene056315:intron | 30.0% | |
| TACTATAGTCTCAGAATGTA+TGG | - | chr7.3:81829501-81829520 | MS.gene056315:intron | 30.0% | |
| TAGTTCCTAAAGTAACAAAC+AGG | - | chr7.3:81829785-81829804 | MS.gene056315:intron | 30.0% | |
| TGTATACCTACCACATAATA+TGG | + | chr7.3:81830368-81830387 | None:intergenic | 30.0% | |
| TGTTTGAATTATCTCACACA+GGG | - | chr7.3:81829028-81829047 | MS.gene056315:intron | 30.0% | |
| TTCTTAAGAATCCCAACAAT+GGG | - | chr7.3:81829887-81829906 | MS.gene056315:intron | 30.0% | |
| TTGTTTGAATTATCTCACAC+AGG | - | chr7.3:81829027-81829046 | MS.gene056315:intron | 30.0% | |
| TTTCTTAAGAATCCCAACAA+TGG | - | chr7.3:81829886-81829905 | MS.gene056315:intron | 30.0% | |
| TTTGGTCCTTAATTAATGTG+AGG | + | chr7.3:81829710-81829729 | None:intergenic | 30.0% | |
| ! | ATGTGAGTGAACAATCATTT+TGG | + | chr7.3:81829728-81829747 | None:intergenic | 30.0% |
| ! | ATTTCCATTTTGTATTTGGC+AGG | - | chr7.3:81828640-81828659 | MS.gene056315:intron | 30.0% |
| ! | CATTTTTGTGCAATCAAATC+TGG | - | chr7.3:81830072-81830091 | MS.gene056315:CDS | 30.0% |
| ! | TCTTTTCAATGCCTTCTTTA+GGG | + | chr7.3:81828460-81828479 | None:intergenic | 30.0% |
| ! | TTGTAATAAAAAGCGTATCG+CGG | + | chr7.3:81828291-81828310 | None:intergenic | 30.0% |
| ! | TTTTGCGGTCAAAATTTGTA+TGG | - | chr7.3:81828199-81828218 | MS.gene056315:CDS | 30.0% |
| !! | TAAAGAAGGCATTGAAAAGA+GGG | - | chr7.3:81828460-81828479 | MS.gene056315:intron | 30.0% |
| !! | TAATGCCTGTTTGTTACTTT+AGG | + | chr7.3:81829793-81829812 | None:intergenic | 30.0% |
| !!! | TAGCTTTTTTAACTCAGCTT+GGG | - | chr7.3:81829440-81829459 | MS.gene056315:CDS | 30.0% |
| !!! | TTAGCTTTTTTAACTCAGCT+TGG | - | chr7.3:81829439-81829458 | MS.gene056315:CDS | 30.0% |
| !!! | TTCTCAAGTGTGTTTTTAGT+TGG | - | chr7.3:81829538-81829557 | MS.gene056315:intron | 30.0% |
| AAGACCTGCCAAATACAAAA+TGG | + | chr7.3:81828647-81828666 | None:intergenic | 35.0% | |
| ACAACGCCTCACATTAATTA+AGG | - | chr7.3:81829701-81829720 | MS.gene056315:intron | 35.0% | |
| ATTGAGAGAGCTTATGGAAA+TGG | + | chr7.3:81828881-81828900 | None:intergenic | 35.0% | |
| CATGATCTAGTTGAAGAACT+TGG | - | chr7.3:81829113-81829132 | MS.gene056315:intron | 35.0% | |
| GTTTGAATTATCTCACACAG+GGG | - | chr7.3:81829029-81829048 | MS.gene056315:intron | 35.0% | |
| TCAATGAACATGATCCTGTT+TGG | - | chr7.3:81828734-81828753 | MS.gene056315:intron | 35.0% | |
| TGTCAGTGTTATGTTAGTGT+CGG | + | chr7.3:81829211-81829230 | None:intergenic | 35.0% | |
| TTCCTGCACCCAAATTTAAA+AGG | + | chr7.3:81829817-81829836 | None:intergenic | 35.0% | |
| TTTCCTGAGTGAAATAACCA+AGG | + | chr7.3:81829139-81829158 | None:intergenic | 35.0% | |
| TTTGTCCTTAGATGAAGCTA+TGG | + | chr7.3:81828140-81828159 | None:intergenic | 35.0% | |
| ! | AATTCGGACGAGTTTCTTTT+CGG | + | chr7.3:81828056-81828075 | None:intergenic | 35.0% |
| ! | ACAACATTCCACCTTTAAAG+TGG | + | chr7.3:81828985-81829004 | None:intergenic | 35.0% |
| ! | ATCCTTTTAAATTTGGGTGC+AGG | - | chr7.3:81829812-81829831 | MS.gene056315:intron | 35.0% |
| ! | CTCTTTTCAATGCCTTCTTT+AGG | + | chr7.3:81828461-81828480 | None:intergenic | 35.0% |
| ! | CTTTTCAATGCCTTCTTTAG+GGG | + | chr7.3:81828459-81828478 | None:intergenic | 35.0% |
| ! | GAGTTTTACAGAAGCAAGTT+TGG | - | chr7.3:81828482-81828501 | MS.gene056315:intron | 35.0% |
| ! | GTATACTTTTCTAGACAGCA+GGG | - | chr7.3:81829077-81829096 | MS.gene056315:intron | 35.0% |
| ! | TAGAAAAGTATACAAGCCTG+TGG | + | chr7.3:81829070-81829089 | None:intergenic | 35.0% |
| ! | TGTATACTTTTCTAGACAGC+AGG | - | chr7.3:81829076-81829095 | MS.gene056315:intron | 35.0% |
| !! | CAAAGTTTGATGATGATCGA+TGG | - | chr7.3:81828958-81828977 | MS.gene056315:intron | 35.0% |
| !! | CTAAAGAAGGCATTGAAAAG+AGG | - | chr7.3:81828459-81828478 | MS.gene056315:intron | 35.0% |
| !!! | GTGGAATGTTGTTTTAACTG+AGG | - | chr7.3:81828993-81829012 | MS.gene056315:intron | 35.0% |
| ATCTGGATTCTCTGTTGTCA+AGG | - | chr7.3:81830089-81830108 | MS.gene056315:CDS | 40.0% | |
| CAAAGCCATAGCTTCATCTA+AGG | - | chr7.3:81828132-81828151 | MS.gene056315:intron | 40.0% | |
| CATCAAACTTTGAGCCTGTT+TGG | + | chr7.3:81828950-81828969 | None:intergenic | 40.0% | |
| CTCTTAATCTTACGTGAGTC+CGG | + | chr7.3:81828699-81828718 | None:intergenic | 40.0% | |
| GACTCACGTAAGATTAAGAG+TGG | - | chr7.3:81828699-81828718 | MS.gene056315:CDS | 40.0% | |
| GGAAGTCAAAAATTAAGCGG+TGG | - | chr7.3:81830460-81830479 | MS.gene056315:CDS | 40.0% | |
| GTTCTGATACTGTATGTCCA+TGG | - | chr7.3:81828083-81828102 | MS.gene056315:CDS | 40.0% | |
| TACAGGGGTTCCATATTATG+TGG | - | chr7.3:81830355-81830374 | MS.gene056315:intron | 40.0% | |
| TCAACTATGTCAGTCCAAAC+AGG | - | chr7.3:81828933-81828952 | MS.gene056315:intron | 40.0% | |
| TCTGGATTCTCTGTTGTCAA+GGG | - | chr7.3:81830090-81830109 | MS.gene056315:CDS | 40.0% | |
| TGATCGATGGACCACTTTAA+AGG | - | chr7.3:81828971-81828990 | MS.gene056315:intron | 40.0% | |
| TGATGTGTCAGTGTCATGTT+CGG | - | chr7.3:81829271-81829290 | MS.gene056315:intron | 40.0% | |
| TTTGTATTTGGCAGGTCTTC+AGG | - | chr7.3:81828648-81828667 | MS.gene056315:CDS | 40.0% | |
| ! | CTCTTTCCATCTGTGTTTTG+CGG | - | chr7.3:81828184-81828203 | MS.gene056315:CDS | 40.0% |
| ! | GGTCTTGTCTATAGTTTGTC+CGG | - | chr7.3:81828677-81828696 | MS.gene056315:CDS | 40.0% |
| ! | TTATGTTAGTGTCGGATACG+CGG | + | chr7.3:81829203-81829222 | None:intergenic | 40.0% |
| ! | TTTTGACCGCAAAACACAGA+TGG | + | chr7.3:81828193-81828212 | None:intergenic | 40.0% |
| !! | TTTTTGCCAACAAAGCACCA+TGG | + | chr7.3:81828103-81828122 | None:intergenic | 40.0% |
| AAAGCTCTCAAGAAGACCTC+AGG | + | chr7.3:81830493-81830512 | None:intergenic | 45.0% | |
| AAGCAAGTTTGGATCCCGAT+CGG | - | chr7.3:81828493-81828512 | MS.gene056315:intron | 45.0% | |
| AAGCTCTCAAGAAGACCTCA+GGG | + | chr7.3:81830492-81830511 | None:intergenic | 45.0% | |
| ACCTCTTTGAGCCCATTGTT+GGG | + | chr7.3:81829901-81829920 | None:intergenic | 45.0% | |
| CGCTCGAAAAGTGACTATTC+AGG | + | chr7.3:81829382-81829401 | None:intergenic | 45.0% | |
| CTAGTTGAAGAACTTGGCCT+TGG | - | chr7.3:81829119-81829138 | MS.gene056315:intron | 45.0% | |
| GGGGTTCCATATTATGTGGT+AGG | - | chr7.3:81830359-81830378 | MS.gene056315:intron | 45.0% | |
| GTATGTCCATGGTGCTTTGT+TGG | - | chr7.3:81828094-81828113 | MS.gene056315:intron | 45.0% | |
| TACCTCTTTGAGCCCATTGT+TGG | + | chr7.3:81829902-81829921 | None:intergenic | 45.0% | |
| TTTAAGCTCTTCCTCCACCT+AGG | + | chr7.3:81830318-81830337 | None:intergenic | 45.0% | |
| ! | AAAAGCGTATCGCGGAACAA+AGG | + | chr7.3:81828283-81828302 | None:intergenic | 45.0% |
| ! | TCGATGGACCACTTTAAAGG+TGG | - | chr7.3:81828974-81828993 | MS.gene056315:intron | 45.0% |
| ! | TGGCCTTGGTTATTTCACTC+AGG | - | chr7.3:81829133-81829152 | MS.gene056315:intron | 45.0% |
| ! | TTTTCCACGACTCTCTACCT+AGG | - | chr7.3:81830298-81830317 | MS.gene056315:intron | 45.0% |
| !! | CTGCCAAGGTTGGTATAGAA+GGG | - | chr7.3:81829854-81829873 | MS.gene056315:CDS | 45.0% |
| !! | GCATCAGGGTTGAGTTGATA+GGG | + | chr7.3:81828437-81828456 | None:intergenic | 45.0% |
| !! | TGCCAAGGTTGGTATAGAAG+GGG | - | chr7.3:81829855-81829874 | MS.gene056315:CDS | 45.0% |
| !!! | AATATTAATAGTTTTATTAT+AGG | - | chr7.3:81830389-81830408 | MS.gene056315:CDS | 5.0% |
| AACCCTGATGCCCCTAAAGA+AGG | - | chr7.3:81828446-81828465 | MS.gene056315:intron | 50.0% | |
| AGCTCTCAAGAAGACCTCAG+GGG | + | chr7.3:81830491-81830510 | None:intergenic | 50.0% | |
| AGCTTCCATCTGATCCGATC+GGG | + | chr7.3:81828510-81828529 | None:intergenic | 50.0% | |
| CTCACACAGGGGAAACACTA+TGG | - | chr7.3:81829040-81829059 | MS.gene056315:intron | 50.0% | |
| GAAACACTATGGACAGCCAC+AGG | - | chr7.3:81829051-81829070 | MS.gene056315:intron | 50.0% | |
| GAGCTTCCATCTGATCCGAT+CGG | + | chr7.3:81828511-81828530 | None:intergenic | 50.0% | |
| GATCGGATCAGATGGAAGCT+CGG | - | chr7.3:81828510-81828529 | MS.gene056315:intron | 50.0% | |
| TGCCCCTTCTATACCAACCT+TGG | + | chr7.3:81829860-81829879 | None:intergenic | 50.0% | |
| TGGGTGCAGGAAGTTTCTTC+TGG | - | chr7.3:81829825-81829844 | MS.gene056315:intron | 50.0% | |
| ! | TCCCAACAATGGGCTCAAAG+AGG | - | chr7.3:81829897-81829916 | MS.gene056315:intron | 50.0% |
| !! | ATGCCTTCTTTAGGGGCATC+AGG | + | chr7.3:81828452-81828471 | None:intergenic | 50.0% |
| !! | GCTGCCAAGGTTGGTATAGA+AGG | - | chr7.3:81829853-81829872 | MS.gene056315:intron | 50.0% |
| !! | GGCATCAGGGTTGAGTTGAT+AGG | + | chr7.3:81828438-81828457 | None:intergenic | 50.0% |
| !! | TGCCTTCTTTAGGGGCATCA+GGG | + | chr7.3:81828451-81828470 | None:intergenic | 50.0% |
| ACGACTCTCTACCTAGGTGG+AGG | - | chr7.3:81830304-81830323 | MS.gene056315:intron | 55.0% | |
| AGCGTATCGCGGAACAAAGG+CGG | + | chr7.3:81828280-81828299 | None:intergenic | 55.0% | |
| GATGGAAGCTCGGATGTCAG+AGG | - | chr7.3:81828520-81828539 | MS.gene056315:intron | 55.0% | |
| GCTCTCAAGAAGACCTCAGG+GGG | + | chr7.3:81830490-81830509 | None:intergenic | 55.0% | |
| TCCACCTAGGTAGAGAGTCG+TGG | + | chr7.3:81830305-81830324 | None:intergenic | 55.0% | |
| TCCACGACTCTCTACCTAGG+TGG | - | chr7.3:81830301-81830320 | MS.gene056315:intron | 55.0% | |
| TGGATCCCGATCGGATCAGA+TGG | - | chr7.3:81828502-81828521 | MS.gene056315:intron | 55.0% | |
| TGGCAGGTCTTCAGGACAGT+CGG | - | chr7.3:81828656-81828675 | MS.gene056315:CDS | 55.0% | |
| ! | GGTTGGTATAGAAGGGGCAG+AGG | - | chr7.3:81829861-81829880 | MS.gene056315:CDS | 55.0% |
| ! | TCTTCTGGAAGCTGCTGCCA+AGG | - | chr7.3:81829840-81829859 | MS.gene056315:intron | 55.0% |
| CTGGAAGCTGCTGCCAAGGT+TGG | - | chr7.3:81829844-81829863 | MS.gene056315:intron | 60.0% | |
| AAGCGGTGGACAACCCCCTG+AGG | - | chr7.3:81830474-81830493 | MS.gene056315:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 81828028 | 81830531 | 81828028 | ID=MS.gene056315 |
| chr7.3 | mRNA | 81828028 | 81830531 | 81828028 | ID=MS.gene056315.t1;Parent=MS.gene056315 |
| chr7.3 | exon | 81830388 | 81830531 | 81830388 | ID=MS.gene056315.t1.exon1;Parent=MS.gene056315.t1 |
| chr7.3 | CDS | 81830388 | 81830531 | 81830388 | ID=cds.MS.gene056315.t1;Parent=MS.gene056315.t1 |
| chr7.3 | exon | 81830018 | 81830137 | 81830018 | ID=MS.gene056315.t1.exon2;Parent=MS.gene056315.t1 |
| chr7.3 | CDS | 81830018 | 81830137 | 81830018 | ID=cds.MS.gene056315.t1;Parent=MS.gene056315.t1 |
| chr7.3 | exon | 81829854 | 81829897 | 81829854 | ID=MS.gene056315.t1.exon3;Parent=MS.gene056315.t1 |
| chr7.3 | CDS | 81829854 | 81829897 | 81829854 | ID=cds.MS.gene056315.t1;Parent=MS.gene056315.t1 |
| chr7.3 | exon | 81829385 | 81829510 | 81829385 | ID=MS.gene056315.t1.exon4;Parent=MS.gene056315.t1 |
| chr7.3 | CDS | 81829385 | 81829510 | 81829385 | ID=cds.MS.gene056315.t1;Parent=MS.gene056315.t1 |
| chr7.3 | exon | 81828641 | 81828725 | 81828641 | ID=MS.gene056315.t1.exon5;Parent=MS.gene056315.t1 |
| chr7.3 | CDS | 81828641 | 81828725 | 81828641 | ID=cds.MS.gene056315.t1;Parent=MS.gene056315.t1 |
| chr7.3 | exon | 81828183 | 81828239 | 81828183 | ID=MS.gene056315.t1.exon6;Parent=MS.gene056315.t1 |
| chr7.3 | CDS | 81828183 | 81828239 | 81828183 | ID=cds.MS.gene056315.t1;Parent=MS.gene056315.t1 |
| chr7.3 | exon | 81828028 | 81828105 | 81828028 | ID=MS.gene056315.t1.exon7;Parent=MS.gene056315.t1 |
| chr7.3 | CDS | 81828028 | 81828105 | 81828028 | ID=cds.MS.gene056315.t1;Parent=MS.gene056315.t1 |
| Gene Sequence |
| Protein sequence |
