Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49842.t1 | XP_013451520.1 | 95.1 | 999 | 49 | 0 | 1 | 999 | 11 | 1009 | 0.00E+00 | 1728.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49842.t1 | B8XCH5 | 50.0 | 1082 | 440 | 18 | 1 | 999 | 18 | 1081 | 2.0e-239 | 830.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49842.t1 | A0A072U8X0 | 95.1 | 999 | 49 | 0 | 1 | 999 | 11 | 1009 | 0.0e+00 | 1728.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene49842 | 0.805317 | 1.42E-49 | -1.69E-46 |
| MS.gene050297 | MS.gene49842 | 0.822937 | 1.81E-53 | -1.69E-46 |
| MS.gene051885 | MS.gene49842 | 0.808054 | 3.74E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene49842 | 0.818288 | 2.12E-52 | -1.69E-46 |
| MS.gene054585 | MS.gene49842 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene054643 | MS.gene49842 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene059300 | MS.gene49842 | 0.802584 | 5.24E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene49842 | 0.805209 | 1.49E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 225 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATGCTGTGCCGTTTAA+AGG | 0.159382 | 6.3:+19137289 | MS.gene49842:CDS |
| CAGCTGGGATTGGGTGGTTT+GGG | 0.202911 | 6.3:+19135359 | MS.gene49842:CDS |
| TCTGCTGGAGTTTCTTCTTT+TGG | 0.208232 | 6.3:-19134591 | None:intergenic |
| GTCCTAGTTCGAACCCATTT+TGG | 0.213836 | 6.3:-19136308 | None:intergenic |
| CTTGACCGTCTTTCGGCATT+AGG | 0.238833 | 6.3:-19134062 | None:intergenic |
| AGCTCGGTCTGAACCGGCTT+TGG | 0.243409 | 6.3:+19136724 | MS.gene49842:CDS |
| GATTGGAAGCTTTGTTTAGT+TGG | 0.245110 | 6.3:+19137209 | MS.gene49842:CDS |
| GTTTAAAGGGTTTGTGCTTT+TGG | 0.255765 | 6.3:+19137303 | MS.gene49842:CDS |
| ACAGCTGGGATTGGGTGGTT+TGG | 0.268650 | 6.3:+19135358 | MS.gene49842:CDS |
| CATATCCGTGCTTGTTTAGA+AGG | 0.272163 | 6.3:+19136098 | MS.gene49842:CDS |
| TCACCGGCTGGTTCGGTTAC+CGG | 0.279086 | 6.3:-19134528 | None:intergenic |
| TAATGCATTCTTGGTAGAAT+TGG | 0.304819 | 6.3:-19136629 | None:intergenic |
| GGTTTAACATAATGCATTCT+TGG | 0.306858 | 6.3:-19136638 | None:intergenic |
| TCCGGTGCAGGCGGAGTTGC+CGG | 0.314788 | 6.3:-19134651 | None:intergenic |
| TCCGACTTGGAATGAAGATT+TGG | 0.321241 | 6.3:+19135481 | MS.gene49842:CDS |
| GATAGGGTGCGTGCTCTTGC+GGG | 0.324280 | 6.3:+19137142 | MS.gene49842:CDS |
| GCGAATTGGTTTAGATTAGT+TGG | 0.335655 | 6.3:+19136812 | MS.gene49842:CDS |
| GCTCGGTCTGAACCGGCTTT+GGG | 0.345208 | 6.3:+19136725 | MS.gene49842:CDS |
| GTTTCGAATTCAAGATCAAT+TGG | 0.348596 | 6.3:+19135557 | MS.gene49842:CDS |
| GCTTATGTGGTGGCGAAATA+TGG | 0.356278 | 6.3:+19136284 | MS.gene49842:CDS |
| TCTATATGTTCGCGTTGTTA+AGG | 0.359422 | 6.3:+19134845 | MS.gene49842:CDS |
| TGGCGAAATATGGTCCAAAA+TGG | 0.360595 | 6.3:+19136294 | MS.gene49842:CDS |
| CTCTTCTTTCTTGTCATCAC+CGG | 0.369616 | 6.3:-19134439 | None:intergenic |
| GTGAAAATGAAGGTAAAGAT+TGG | 0.376505 | 6.3:+19134949 | MS.gene49842:CDS |
| TGAACTAAAACCGTTGTTGC+CGG | 0.377060 | 6.3:-19136896 | None:intergenic |
| CTTCTCATCACCGGCTGGTT+CGG | 0.384295 | 6.3:-19134535 | None:intergenic |
| GAGTCGTGGCAGTCGGATTC+CGG | 0.386228 | 6.3:+19135248 | MS.gene49842:CDS |
| TTAGGAAAAGTTAAAATCTC+TGG | 0.386303 | 6.3:+19134279 | MS.gene49842:CDS |
| ATCCTCGGATCCATGTTCTT+TGG | 0.388714 | 6.3:-19137025 | None:intergenic |
| CCAATTGGTTTACTTGAAGT+TGG | 0.392682 | 6.3:+19136197 | MS.gene49842:CDS |
| TCTATGCTGTGCCGTTTAAA+GGG | 0.398920 | 6.3:+19137290 | MS.gene49842:CDS |
| CCTTGCACGGTTCTCACAAT+TGG | 0.400687 | 6.3:+19136389 | MS.gene49842:CDS |
| CAATTGGTTTACTTGAAGTT+GGG | 0.401660 | 6.3:+19136198 | MS.gene49842:CDS |
| CCAGGATTTACAGCTGGGAT+TGG | 0.402611 | 6.3:+19135349 | MS.gene49842:CDS |
| GATTGGCGACGTTGCAGCCC+AGG | 0.404597 | 6.3:+19137180 | MS.gene49842:CDS |
| TCACCGACTGATTCAATTAC+CGG | 0.405021 | 6.3:-19134480 | None:intergenic |
| TCGAGATGGTTTAATCTTTG+TGG | 0.407465 | 6.3:+19135641 | MS.gene49842:CDS |
| CCAATCCCAGCTGTAAATCC+TGG | 0.408557 | 6.3:-19135349 | None:intergenic |
| CTGTGGAAGTGGTTCGAATC+AGG | 0.410881 | 6.3:+19137116 | MS.gene49842:CDS |
| TTTACTATCCGTTAGAGAAA+AGG | 0.414602 | 6.3:+19134337 | MS.gene49842:CDS |
| CTTCTTTAGAAGTTTCTGTT+TGG | 0.420548 | 6.3:+19135012 | MS.gene49842:CDS |
| GTATACCATTGCGGTGCTAA+TGG | 0.421746 | 6.3:-19135146 | None:intergenic |
| TGCAGCCCAGGGTGAGAGAT+TGG | 0.421788 | 6.3:+19137192 | MS.gene49842:CDS |
| CCAGCTGTAAATCCTGGGTT+TGG | 0.421812 | 6.3:-19135343 | None:intergenic |
| CTTGTCATCACCGGCTGAAT+CGG | 0.422445 | 6.3:-19134430 | None:intergenic |
| GATTCGCACGTGGGTGAATC+CGG | 0.422576 | 6.3:+19136877 | MS.gene49842:CDS |
| GGGAGGGCACAAAGTTTGAT+TGG | 0.422832 | 6.3:+19137163 | MS.gene49842:CDS |
| GATGTTTGCGATATTCTGTT+TGG | 0.424069 | 6.3:+19137252 | MS.gene49842:CDS |
| GAGTCCTGAACTTTATGTTA+AGG | 0.424579 | 6.3:+19135400 | MS.gene49842:CDS |
| TGAGGAAAAGTAAAGCGAAT+TGG | 0.426414 | 6.3:+19136798 | MS.gene49842:CDS |
| GGTGCGTGCTCTTGCGGGGA+GGG | 0.427713 | 6.3:+19137147 | MS.gene49842:CDS |
| TAAACTTTCGCTCGTGTCTC+CGG | 0.428687 | 6.3:-19135281 | None:intergenic |
| TCACCGGCTGAATCGGTAAC+AGG | 0.433073 | 6.3:-19134423 | None:intergenic |
| CTACGTGGACATGGTAAGTT+TGG | 0.434355 | 6.3:+19137051 | MS.gene49842:CDS |
| GCAATCATGACGTCATTTCC+CGG | 0.435734 | 6.3:-19135188 | None:intergenic |
| AGTTCAGGACTCCGAACCTT+AGG | 0.439184 | 6.3:-19135389 | None:intergenic |
| GGTTCAGTTCATGCTTGATT+CGG | 0.439464 | 6.3:+19136757 | MS.gene49842:CDS |
| TCGTTTAGCTCGGTCTGAAC+CGG | 0.441535 | 6.3:+19136718 | MS.gene49842:CDS |
| ACATCCTTCGTTTCAGCTAC+CGG | 0.443201 | 6.3:-19134687 | None:intergenic |
| ACTTCCACAGACCTCATTGT+TGG | 0.444809 | 6.3:-19137103 | None:intergenic |
| ACTGTTGGTAGAATCAAATA+AGG | 0.446566 | 6.3:-19136947 | None:intergenic |
| GTCAATGACCTCTGAGACGA+TGG | 0.447157 | 6.3:+19134206 | MS.gene49842:CDS |
| CGATAGGGTGCGTGCTCTTG+CGG | 0.447912 | 6.3:+19137141 | MS.gene49842:CDS |
| ATGCATTATGTTAAACCATT+CGG | 0.448741 | 6.3:+19136644 | MS.gene49842:CDS |
| CAAGAGATTTGAATCCTCAA+TGG | 0.452098 | 6.3:+19134148 | MS.gene49842:CDS |
| TGCGGTGCTAATGGACTATC+CGG | 0.452139 | 6.3:-19135137 | None:intergenic |
| GAACTTGATGAAGAGTTTGA+TGG | 0.452182 | 6.3:+19137076 | MS.gene49842:CDS |
| TTTCGAATTCAAGATCAATT+GGG | 0.452813 | 6.3:+19135558 | MS.gene49842:CDS |
| TGGAGCAACGAATCTTCTTC+CGG | 0.452951 | 6.3:+19136226 | MS.gene49842:CDS |
| AGATGCTAGAGATGTTAGAA+TGG | 0.455686 | 6.3:+19136439 | MS.gene49842:CDS |
| GATGCTAGAGATGTTAGAAT+GGG | 0.456619 | 6.3:+19136440 | MS.gene49842:CDS |
| AACAATGAGGTCTGTGGAAG+TGG | 0.457588 | 6.3:+19137105 | MS.gene49842:CDS |
| CTATCCGGTGGAACTCTCTT+CGG | 0.457963 | 6.3:-19135122 | None:intergenic |
| TTCATGGTTGAGTTTAATGC+AGG | 0.457985 | 6.3:+19136595 | MS.gene49842:CDS |
| TGAGCCTTAACATAAAGTTC+AGG | 0.461491 | 6.3:-19135404 | None:intergenic |
| TAAGGCTCAGCTTGGTGCAC+AGG | 0.461853 | 6.3:+19135418 | MS.gene49842:CDS |
| TGAGGTTTAGGAACAGAATG+AGG | 0.463797 | 6.3:+19136999 | MS.gene49842:CDS |
| TTACTTGAAGTTGGGATTCG+TGG | 0.464302 | 6.3:+19136206 | MS.gene49842:CDS |
| TGAAAATGAAGGTAAAGATT+GGG | 0.466816 | 6.3:+19134950 | MS.gene49842:CDS |
| ACAACGCGAACATATAGAAA+TGG | 0.467257 | 6.3:-19134840 | None:intergenic |
| CATTCCATCTCGGGTTAAAC+CGG | 0.467359 | 6.3:-19136340 | None:intergenic |
| CAGGATTTACAGCTGGGATT+GGG | 0.467893 | 6.3:+19135350 | MS.gene49842:CDS |
| GTGTATTGCTCATTCCATCT+CGG | 0.471544 | 6.3:-19136350 | None:intergenic |
| TTATGTTAAACCATTCGGTC+CGG | 0.472094 | 6.3:+19136649 | MS.gene49842:CDS |
| TGTATTGCTCATTCCATCTC+GGG | 0.473085 | 6.3:-19136349 | None:intergenic |
| TCCTCTCGATCGACGCCACA+TGG | 0.473118 | 6.3:-19135592 | None:intergenic |
| GCTGTTCCTTGACCGTCTTT+CGG | 0.475271 | 6.3:-19134069 | None:intergenic |
| CCAAACCCAGGATTTACAGC+TGG | 0.475406 | 6.3:+19135343 | MS.gene49842:CDS |
| TCTCAGATTAAAGGTGAACT+TGG | 0.475536 | 6.3:+19134369 | MS.gene49842:CDS |
| CCAACTTCAAGTAAACCAAT+TGG | 0.475732 | 6.3:-19136197 | None:intergenic |
| CTGAGGCATCCGAGGTTTCG+TGG | 0.481796 | 6.3:+19137340 | MS.gene49842:CDS |
| ATTCTGTTTGGTAATGTCGT+TGG | 0.483815 | 6.3:+19137264 | MS.gene49842:CDS |
| TGGTTTGGGCTCCGAACCTA+AGG | 0.485892 | 6.3:+19135373 | MS.gene49842:CDS |
| TGAAGGTAAAGATTGGGATC+AGG | 0.487382 | 6.3:+19134956 | MS.gene49842:CDS |
| CCCATTCTCCTCGCACCACC+TGG | 0.489919 | 6.3:-19136539 | None:intergenic |
| AAAAGCACAAACCCTTTAAA+CGG | 0.491505 | 6.3:-19137301 | None:intergenic |
| ACCGGCAACTCCGCCTGCAC+CGG | 0.495123 | 6.3:+19134650 | MS.gene49842:CDS |
| TCATGATTGCTGTATGGATT+GGG | 0.495653 | 6.3:+19135201 | MS.gene49842:CDS |
| CTCAAAACGTCTTGTTGACC+CGG | 0.496992 | 6.3:-19136668 | None:intergenic |
| GCCAGGTGGTGCGAGGAGAA+TGG | 0.497164 | 6.3:+19136538 | MS.gene49842:CDS |
| GATTTACAGCTGGGATTGGG+TGG | 0.500175 | 6.3:+19135353 | MS.gene49842:CDS |
| CCAGGTGGTGCGAGGAGAAT+GGG | 0.500720 | 6.3:+19136539 | MS.gene49842:CDS |
| GGCGAAATATGGTCCAAAAT+GGG | 0.500863 | 6.3:+19136295 | MS.gene49842:CDS |
| AGAAGAAAATACAAAAGAAG+AGG | 0.501047 | 6.3:+19134563 | MS.gene49842:CDS |
| TGGGCTCCGAACCTAAGGTT+CGG | 0.502057 | 6.3:+19135378 | MS.gene49842:CDS |
| AGCTTCCAATCTCTCACCCT+GGG | 0.505653 | 6.3:-19137197 | None:intergenic |
| AAGAGATTTGAATCCTCAAT+GGG | 0.506511 | 6.3:+19134149 | MS.gene49842:CDS |
| GTCCAAAATGGGTTCGAACT+AGG | 0.506579 | 6.3:+19136306 | MS.gene49842:CDS |
| CAGTTAACGAAGCCTCCAAT+TGG | 0.508014 | 6.3:+19136182 | MS.gene49842:CDS |
| GGATTAACAACCTCCGGTGC+AGG | 0.508272 | 6.3:-19134663 | None:intergenic |
| AGCAGAGAAAACTCCGGCAC+CGG | 0.509315 | 6.3:+19134608 | MS.gene49842:CDS |
| ACCGGTGGATTAACAACCTC+CGG | 0.513220 | 6.3:-19134669 | None:intergenic |
| ATGACTAGAAACGGTTCAAA+CGG | 0.513831 | 6.3:-19135521 | None:intergenic |
| TATGTTAAACCATTCGGTCC+GGG | 0.515413 | 6.3:+19136650 | MS.gene49842:CDS |
| GGCAACTCCGCCTGCACCGG+AGG | 0.518749 | 6.3:+19134653 | MS.gene49842:CDS |
| AAATCCACCGGCGAATCCAC+CGG | 0.518908 | 6.3:+19134632 | MS.gene49842:CDS |
| AGGACTCCGAACCTTAGGTT+CGG | 0.519500 | 6.3:-19135384 | None:intergenic |
| TCTAATGTAATGACTAGAAA+CGG | 0.519759 | 6.3:-19135530 | None:intergenic |
| GAGGAAAATCTTTCTTACAC+AGG | 0.520301 | 6.3:+19135668 | MS.gene49842:CDS |
| AGTCTCAAATACCACAGCTT+GGG | 0.521141 | 6.3:-19135311 | None:intergenic |
| TCTTGTTGACCCGGACCGAA+TGG | 0.521610 | 6.3:-19136659 | None:intergenic |
| GGTTAGATGGGATTCGCACG+TGG | 0.528719 | 6.3:+19136867 | MS.gene49842:CDS |
| GGAGTTGCCGGTGGATTCGC+CGG | 0.530330 | 6.3:-19134639 | None:intergenic |
| GGATTCCGGTGGTTTGATAC+CGG | 0.531419 | 6.3:+19135262 | MS.gene49842:CDS |
| ATTGGCGACGTTGCAGCCCA+GGG | 0.533947 | 6.3:+19137181 | MS.gene49842:CDS |
| TCTCAGAGGTCATTGACTCT+TGG | 0.535745 | 6.3:-19134200 | None:intergenic |
| TCCACCGGTAGCTGAAACGA+AGG | 0.537813 | 6.3:+19134683 | MS.gene49842:CDS |
| GTCATGATTGCTGTATGGAT+TGG | 0.539909 | 6.3:+19135200 | MS.gene49842:CDS |
| TCCATGTGGCGTCGATCGAG+AGG | 0.541235 | 6.3:+19135591 | MS.gene49842:CDS |
| ACTTCAAGTAAACCAATTGG+AGG | 0.542639 | 6.3:-19136194 | None:intergenic |
| ACCGGCTTTGGGTTCAGAAG+TGG | 0.542962 | 6.3:+19136736 | MS.gene49842:CDS |
| TGGTTCGAATCAGGTACGAT+AGG | 0.544765 | 6.3:+19137125 | MS.gene49842:CDS |
| GGGTGCGTGCTCTTGCGGGG+AGG | 0.546936 | 6.3:+19137146 | MS.gene49842:CDS |
| AAACAAAGAGAAGCAAATAA+CGG | 0.548286 | 6.3:+19135058 | MS.gene49842:CDS |
| CTTTATGTTAAGGCTCAGCT+TGG | 0.551843 | 6.3:+19135410 | MS.gene49842:CDS |
| TAGTAACGGCTCGTTTAGCT+CGG | 0.551888 | 6.3:+19136708 | MS.gene49842:CDS |
| TTAACTGCTTCGCAGAAGCA+CGG | 0.552505 | 6.3:-19136166 | None:intergenic |
| ATGACGTCATGATTGCTGTA+TGG | 0.553152 | 6.3:+19135195 | MS.gene49842:CDS |
| ACCACTTCTGAACCCAAAGC+CGG | 0.553210 | 6.3:-19136737 | None:intergenic |
| GTTTAATCTTTGTGGTTCAG+AGG | 0.554034 | 6.3:+19135649 | MS.gene49842:CDS |
| CAAACCCAGGATTTACAGCT+GGG | 0.554548 | 6.3:+19135344 | MS.gene49842:CDS |
| TTCCGGTGAAAACGAAAGAC+GGG | 0.555556 | 6.3:+19136243 | MS.gene49842:CDS |
| TGGAACAACTGATGCTTATG+TGG | 0.556975 | 6.3:+19136271 | MS.gene49842:CDS |
| TCGAGTTTCTCGTCCCATTG+AGG | 0.558223 | 6.3:-19134162 | None:intergenic |
| GAAAGCTGAAGAGAAGTCAC+CGG | 0.558569 | 6.3:+19134461 | MS.gene49842:CDS |
| CGACTCCTGAAAAGCTTCAT+CGG | 0.561784 | 6.3:-19135231 | None:intergenic |
| CTTGAATCGGAAAATTCACC+GGG | 0.567841 | 6.3:+19135170 | MS.gene49842:CDS |
| GAACTAGGACTATTGTAGAC+CGG | 0.568885 | 6.3:+19136321 | MS.gene49842:CDS |
| TCAACTCGGCTAATCCGACT+TGG | 0.569244 | 6.3:+19135468 | MS.gene49842:CDS |
| ATCCGTGCTTGTTTAGAAGG+TGG | 0.571890 | 6.3:+19136101 | MS.gene49842:CDS |
| GCAATGGTATACGCTTGAAT+CGG | 0.574115 | 6.3:+19135157 | MS.gene49842:CDS |
| AATGAGGGTGCCAAAGAACA+TGG | 0.574433 | 6.3:+19137015 | MS.gene49842:CDS |
| CAATCCCAGCTGTAAATCCT+GGG | 0.574590 | 6.3:-19135348 | None:intergenic |
| TAGTCTCAAATACCACAGCT+TGG | 0.579911 | 6.3:-19135312 | None:intergenic |
| GCTTGAATCGGAAAATTCAC+CGG | 0.580514 | 6.3:+19135169 | MS.gene49842:CDS |
| TAGACCGGTTTAACCCGAGA+TGG | 0.580601 | 6.3:+19136336 | MS.gene49842:CDS |
| GTGGGTGAATCCGGCAACAA+CGG | 0.581645 | 6.3:+19136886 | MS.gene49842:CDS |
| TTTATTATCTGAGGCATCCG+AGG | 0.583279 | 6.3:+19137332 | MS.gene49842:CDS |
| AAGCTTCCAATCTCTCACCC+TGG | 0.584206 | 6.3:-19137198 | None:intergenic |
| ACCGGAGGTTGTTAATCCAC+CGG | 0.584801 | 6.3:+19134668 | MS.gene49842:CDS |
| TTACCTGTTACCGATTCAGC+CGG | 0.585131 | 6.3:+19134420 | MS.gene49842:CDS |
| GGTTCGAATCAGGTACGATA+GGG | 0.586450 | 6.3:+19137126 | MS.gene49842:CDS |
| GTAATTGAATCAGTCGGTGA+TGG | 0.586668 | 6.3:+19134483 | MS.gene49842:CDS |
| GAGGATGTCCTACGTGGACA+TGG | 0.588871 | 6.3:+19137042 | MS.gene49842:CDS |
| ACCAAATCTTCATTCCAAGT+CGG | 0.591542 | 6.3:-19135482 | None:intergenic |
| TTTATCTTTCTCCCAAGCTG+TGG | 0.592083 | 6.3:+19135300 | MS.gene49842:CDS |
| CTTCCGGTGAAAACGAAAGA+CGG | 0.595345 | 6.3:+19136242 | MS.gene49842:CDS |
| GAGGTTTAGGAACAGAATGA+GGG | 0.595506 | 6.3:+19137000 | MS.gene49842:CDS |
| ATAGGGTGCGTGCTCTTGCG+GGG | 0.595621 | 6.3:+19137143 | MS.gene49842:CDS |
| TCCGGCACCGGAAAATCCAC+CGG | 0.596866 | 6.3:+19134620 | MS.gene49842:CDS |
| AGAACAAAGAGTGAAAATGA+AGG | 0.597593 | 6.3:+19134939 | MS.gene49842:CDS |
| TCGAGAGGAGATTAGATGAT+CGG | 0.599775 | 6.3:+19135606 | MS.gene49842:CDS |
| GCAAACATCGCTGTAGCACG+TGG | 0.600043 | 6.3:-19137238 | None:intergenic |
| GGATGTTTATGATCCTTGCA+CGG | 0.603723 | 6.3:+19136376 | MS.gene49842:CDS |
| GTTGCCGGTGGATTCGCCGG+TGG | 0.605637 | 6.3:-19134636 | None:intergenic |
| CCGGCTGGTTCGGTTACCGG+TGG | 0.605674 | 6.3:-19134525 | None:intergenic |
| TCGTGGCAGTCGGATTCCGG+TGG | 0.606208 | 6.3:+19135251 | MS.gene49842:CDS |
| TGGTTTGAAAATTTCTTACG+TGG | 0.608351 | 6.3:+19134389 | MS.gene49842:CDS |
| GGCATGTCACCACGAAACCT+CGG | 0.609287 | 6.3:-19137349 | None:intergenic |
| AGGTCATTGACTCTTGGTCA+AGG | 0.609913 | 6.3:-19134194 | None:intergenic |
| GGACGGATGTGAAATCGAGA+TGG | 0.611002 | 6.3:+19135627 | MS.gene49842:CDS |
| CCAATTGTGAGAACCGTGCA+AGG | 0.616508 | 6.3:-19136389 | None:intergenic |
| CAAATAACGGAGATTTCACT+CGG | 0.617628 | 6.3:+19135071 | MS.gene49842:CDS |
| GGTGCAGGCGGAGTTGCCGG+TGG | 0.618271 | 6.3:-19134648 | None:intergenic |
| TCCTTCGTTTCAGCTACCGG+TGG | 0.618506 | 6.3:-19134684 | None:intergenic |
| AAAACGAAAGACGGGACACG+TGG | 0.618557 | 6.3:+19136251 | MS.gene49842:CDS |
| TGTCTCCGGTATCAAACCAC+CGG | 0.619470 | 6.3:-19135267 | None:intergenic |
| ATGTCCACGTAGGACATCCT+CGG | 0.620138 | 6.3:-19137040 | None:intergenic |
| AGTTCCGAAGAGAGTTCCAC+CGG | 0.620502 | 6.3:+19135118 | MS.gene49842:CDS |
| ATACTCATGTGTGGAGCATG+AGG | 0.623826 | 6.3:+19136780 | MS.gene49842:CDS |
| GTTAGATGGGATTCGCACGT+GGG | 0.625595 | 6.3:+19136868 | MS.gene49842:CDS |
| TCGGATTGGTTTAGTCAACT+CGG | 0.627132 | 6.3:+19135454 | MS.gene49842:CDS |
| CAGAGATCGAAGCAGAAGCG+CGG | 0.627407 | 6.3:+19134794 | MS.gene49842:CDS |
| GTTGACTAAACCAATCCGAC+CGG | 0.631922 | 6.3:-19135450 | None:intergenic |
| TTAACAACCTCCGGTGCAGG+CGG | 0.633051 | 6.3:-19134660 | None:intergenic |
| CCACCGGTAACCGAACCAGC+CGG | 0.634474 | 6.3:+19134525 | MS.gene49842:CDS |
| GAGGAGATTAGATGATCGGA+CGG | 0.634983 | 6.3:+19135610 | MS.gene49842:CDS |
| ATGCTAGAGATGTTAGAATG+GGG | 0.636316 | 6.3:+19136441 | MS.gene49842:CDS |
| ATAGTCCATTAGCACCGCAA+TGG | 0.637924 | 6.3:+19135141 | MS.gene49842:CDS |
| ATCCACCTTCTAAACAAGCA+CGG | 0.638012 | 6.3:-19136103 | None:intergenic |
| AAGAACCTAATGCCGAAAGA+CGG | 0.639612 | 6.3:+19134057 | MS.gene49842:CDS |
| GGAAGCACGTTTGTGAAAAG+CGG | 0.639955 | 6.3:+19134300 | MS.gene49842:CDS |
| TGCCAAAGAACATGGATCCG+AGG | 0.642801 | 6.3:+19137023 | MS.gene49842:CDS |
| ATTGATCTCCATCGTCTCAG+AGG | 0.644785 | 6.3:-19134214 | None:intergenic |
| AACTGCTATGAAGATAGTAA+CGG | 0.650640 | 6.3:+19136694 | MS.gene49842:CDS |
| AAGAAGTTCACGAAAACAGA+CGG | 0.651665 | 6.3:-19137370 | None:intergenic |
| GCTGTGGTATTTGAGACTAA+CGG | 0.660341 | 6.3:+19135316 | MS.gene49842:CDS |
| AACTCCAGCAGAGAAAACTC+CGG | 0.662938 | 6.3:+19134602 | MS.gene49842:CDS |
| GAATGGGGAAAATTCGTGTG+CGG | 0.663673 | 6.3:+19136456 | MS.gene49842:CDS |
| TCACCGGTAATTGAATCAGT+CGG | 0.673753 | 6.3:+19134477 | MS.gene49842:CDS |
| CTAATGCCGAAAGACGGTCA+AGG | 0.704793 | 6.3:+19134063 | MS.gene49842:CDS |
| GGTGCTAATGGACTATCCGG+TGG | 0.707887 | 6.3:-19135134 | None:intergenic |
| ATAATCTGATCAGAAAACGA+CGG | 0.708907 | 6.3:-19137403 | None:intergenic |
| GATTCAAGCGTATACCATTG+CGG | 0.708958 | 6.3:-19135155 | None:intergenic |
| TATGAAATTGTTCAGAAACG+AGG | 0.709736 | 6.3:+19134729 | MS.gene49842:CDS |
| ATGGAATGAGCAATACACAT+GGG | 0.710143 | 6.3:+19136355 | MS.gene49842:CDS |
| ACTAACGGTTATCCAAACCC+AGG | 0.721683 | 6.3:+19135331 | MS.gene49842:CDS |
| CAAACATCGCTGTAGCACGT+GGG | 0.725433 | 6.3:-19137237 | None:intergenic |
| GATGGAATGAGCAATACACA+TGG | 0.725517 | 6.3:+19136354 | MS.gene49842:CDS |
| GGATCCGAGGATGTCCTACG+TGG | 0.726968 | 6.3:+19137036 | MS.gene49842:CDS |
| AACAACTGATGCTTATGTGG+TGG | 0.739510 | 6.3:+19136274 | MS.gene49842:CDS |
| AATAAGAATTCACGTAGACG+CGG | 0.749111 | 6.3:-19136499 | None:intergenic |
| CAAACTTACCATGTCCACGT+AGG | 0.751076 | 6.3:-19137050 | None:intergenic |
| TTGATTCGGATACTCATGTG+TGG | 0.755979 | 6.3:+19136771 | MS.gene49842:CDS |
| TGGGAAAACGAAGATCCATG+TGG | 0.766661 | 6.3:+19135577 | MS.gene49842:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAATACTATTAATT+AGG | + | chr6.3:19135830-19135849 | MS.gene49842:intron | 10.0% |
| !!! | TAATTAATAGTATTTTTTGA+AGG | - | chr6.3:19135831-19135850 | None:intergenic | 10.0% |
| !! | AGTAAAATATGCAATATATT+TGG | - | chr6.3:19135711-19135730 | None:intergenic | 15.0% |
| !! | CATATATAAAATGAACACAT+TGG | - | chr6.3:19135747-19135766 | None:intergenic | 20.0% |
| !!! | TATATTGCATATTTTACTGT+TGG | + | chr6.3:19135713-19135732 | MS.gene49842:intron | 20.0% |
| ! | AAACAAAGAGAAGCAAATAA+CGG | + | chr6.3:19135058-19135077 | MS.gene49842:CDS | 25.0% |
| ! | AAAGCATACATAAAAACTGT+TGG | - | chr6.3:19136965-19136984 | None:intergenic | 25.0% |
| ! | AAATCCAAAATGTCAATTAG+TGG | - | chr6.3:19136058-19136077 | None:intergenic | 25.0% |
| ! | AATCCAAAATGTCAATTAGT+GGG | - | chr6.3:19136057-19136076 | None:intergenic | 25.0% |
| ! | AATGAGCTTATATTTAGAGA+CGG | + | chr6.3:19135897-19135916 | MS.gene49842:intron | 25.0% |
| ! | AGAAGAAAATACAAAAGAAG+AGG | + | chr6.3:19134563-19134582 | MS.gene49842:CDS | 25.0% |
| ! | ATGCATTATGTTAAACCATT+CGG | + | chr6.3:19136644-19136663 | MS.gene49842:CDS | 25.0% |
| ! | TCTAATGTAATGACTAGAAA+CGG | - | chr6.3:19135533-19135552 | None:intergenic | 25.0% |
| ! | TGAAAATGAAGGTAAAGATT+GGG | + | chr6.3:19134950-19134969 | MS.gene49842:CDS | 25.0% |
| ! | TTAGGAAAAGTTAAAATCTC+TGG | + | chr6.3:19134279-19134298 | MS.gene49842:CDS | 25.0% |
| ! | TTTCGAATTCAAGATCAATT+GGG | + | chr6.3:19135558-19135577 | MS.gene49842:CDS | 25.0% |
| !! | TTAGATTTTCATGTTCTTCA+TGG | + | chr6.3:19136579-19136598 | MS.gene49842:CDS | 25.0% |
| AACTGCTATGAAGATAGTAA+CGG | + | chr6.3:19136694-19136713 | MS.gene49842:CDS | 30.0% | |
| AAGAGATTTGAATCCTCAAT+GGG | + | chr6.3:19134149-19134168 | MS.gene49842:CDS | 30.0% | |
| ACAACGACAAAAAAACAACT+GGG | + | chr6.3:19134241-19134260 | MS.gene49842:CDS | 30.0% | |
| AGAACAAAGAGTGAAAATGA+AGG | + | chr6.3:19134939-19134958 | MS.gene49842:CDS | 30.0% | |
| ATAATCTGATCAGAAAACGA+CGG | - | chr6.3:19137406-19137425 | None:intergenic | 30.0% | |
| GGTTTAACATAATGCATTCT+TGG | - | chr6.3:19136641-19136660 | None:intergenic | 30.0% | |
| GTGAAAATGAAGGTAAAGAT+TGG | + | chr6.3:19134949-19134968 | MS.gene49842:CDS | 30.0% | |
| GTTTCGAATTCAAGATCAAT+TGG | + | chr6.3:19135557-19135576 | MS.gene49842:CDS | 30.0% | |
| TAATGCATTCTTGGTAGAAT+TGG | - | chr6.3:19136632-19136651 | None:intergenic | 30.0% | |
| TACAACGACAAAAAAACAAC+TGG | + | chr6.3:19134240-19134259 | MS.gene49842:CDS | 30.0% | |
| TATGAAATTGTTCAGAAACG+AGG | + | chr6.3:19134729-19134748 | MS.gene49842:CDS | 30.0% | |
| TGGTTTGAAAATTTCTTACG+TGG | + | chr6.3:19134389-19134408 | MS.gene49842:CDS | 30.0% | |
| TTTACTATCCGTTAGAGAAA+AGG | + | chr6.3:19134337-19134356 | MS.gene49842:CDS | 30.0% | |
| ! | AAAAGCACAAACCCTTTAAA+CGG | - | chr6.3:19137304-19137323 | None:intergenic | 30.0% |
| ! | ACTGTTGGTAGAATCAAATA+AGG | - | chr6.3:19136950-19136969 | None:intergenic | 30.0% |
| ! | CAATTGGTTTACTTGAAGTT+GGG | + | chr6.3:19136198-19136217 | MS.gene49842:CDS | 30.0% |
| ! | CTTCTTTAGAAGTTTCTGTT+TGG | + | chr6.3:19135012-19135031 | MS.gene49842:CDS | 30.0% |
| ! | CTTTCTTGATTCTGATTTTG+AGG | + | chr6.3:19136981-19137000 | MS.gene49842:CDS | 30.0% |
| !! | ACAATTGGTGTTTTCGATAA+TGG | + | chr6.3:19136404-19136423 | MS.gene49842:CDS | 30.0% |
| !! | ACTGTGTTTTATTGGTTAGA+TGG | + | chr6.3:19136854-19136873 | MS.gene49842:CDS | 30.0% |
| !! | CTGTGTTTTATTGGTTAGAT+GGG | + | chr6.3:19136855-19136874 | MS.gene49842:CDS | 30.0% |
| !! | GTTTTCGCTTTTGATAAAGA+AGG | + | chr6.3:19134978-19134997 | MS.gene49842:CDS | 30.0% |
| !!! | CTTTTTTCAAAGCTTGTGAT+TGG | + | chr6.3:19134903-19134922 | MS.gene49842:CDS | 30.0% |
| !!! | GAATGAAGATTTGGTTTTTG+TGG | + | chr6.3:19135490-19135509 | MS.gene49842:CDS | 30.0% |
| !!! | TGATTCTGATTTTGAGGTTT+AGG | + | chr6.3:19136987-19137006 | MS.gene49842:CDS | 30.0% |
| !!! | TTCTTTTTTCTTCTCATCAC+CGG | - | chr6.3:19134547-19134566 | None:intergenic | 30.0% |
| AAGAAGTTCACGAAAACAGA+CGG | - | chr6.3:19137373-19137392 | None:intergenic | 35.0% | |
| AATAAGAATTCACGTAGACG+CGG | - | chr6.3:19136502-19136521 | None:intergenic | 35.0% | |
| ACAACGCGAACATATAGAAA+TGG | - | chr6.3:19134843-19134862 | None:intergenic | 35.0% | |
| ACCAAATCTTCATTCCAAGT+CGG | - | chr6.3:19135485-19135504 | None:intergenic | 35.0% | |
| ACTTCAAGTAAACCAATTGG+AGG | - | chr6.3:19136197-19136216 | None:intergenic | 35.0% | |
| AGATGCTAGAGATGTTAGAA+TGG | + | chr6.3:19136439-19136458 | MS.gene49842:CDS | 35.0% | |
| ATGACTAGAAACGGTTCAAA+CGG | - | chr6.3:19135524-19135543 | None:intergenic | 35.0% | |
| ATGCTAGAGATGTTAGAATG+GGG | + | chr6.3:19136441-19136460 | MS.gene49842:CDS | 35.0% | |
| ATGGAATGAGCAATACACAT+GGG | + | chr6.3:19136355-19136374 | MS.gene49842:CDS | 35.0% | |
| CAAGAGATTTGAATCCTCAA+TGG | + | chr6.3:19134148-19134167 | MS.gene49842:CDS | 35.0% | |
| CCAACTTCAAGTAAACCAAT+TGG | - | chr6.3:19136200-19136219 | None:intergenic | 35.0% | |
| GAAAAAAGAAGAGAATCCAC+CGG | + | chr6.3:19134509-19134528 | MS.gene49842:CDS | 35.0% | |
| GAACTTGATGAAGAGTTTGA+TGG | + | chr6.3:19137076-19137095 | MS.gene49842:CDS | 35.0% | |
| GAGGAAAATCTTTCTTACAC+AGG | + | chr6.3:19135668-19135687 | MS.gene49842:CDS | 35.0% | |
| GAGTCCTGAACTTTATGTTA+AGG | + | chr6.3:19135400-19135419 | MS.gene49842:CDS | 35.0% | |
| GATGCTAGAGATGTTAGAAT+GGG | + | chr6.3:19136440-19136459 | MS.gene49842:CDS | 35.0% | |
| GATGTTTGCGATATTCTGTT+TGG | + | chr6.3:19137252-19137271 | MS.gene49842:CDS | 35.0% | |
| GTTTAATCTTTGTGGTTCAG+AGG | + | chr6.3:19135649-19135668 | MS.gene49842:CDS | 35.0% | |
| TCATGATTGCTGTATGGATT+GGG | + | chr6.3:19135201-19135220 | MS.gene49842:CDS | 35.0% | |
| TCGAGATGGTTTAATCTTTG+TGG | + | chr6.3:19135641-19135660 | MS.gene49842:CDS | 35.0% | |
| TCTATATGTTCGCGTTGTTA+AGG | + | chr6.3:19134845-19134864 | MS.gene49842:CDS | 35.0% | |
| TCTCAGATTAAAGGTGAACT+TGG | + | chr6.3:19134369-19134388 | MS.gene49842:CDS | 35.0% | |
| TGAGCCTTAACATAAAGTTC+AGG | - | chr6.3:19135407-19135426 | None:intergenic | 35.0% | |
| TGAGGAAAAGTAAAGCGAAT+TGG | + | chr6.3:19136798-19136817 | MS.gene49842:CDS | 35.0% | |
| TTATGTTAAACCATTCGGTC+CGG | + | chr6.3:19136649-19136668 | MS.gene49842:CDS | 35.0% | |
| TTCATGGTTGAGTTTAATGC+AGG | + | chr6.3:19136595-19136614 | MS.gene49842:CDS | 35.0% | |
| ! | AAAACGCTCCTTTTCTCTAA+CGG | - | chr6.3:19134348-19134367 | None:intergenic | 35.0% |
| ! | AGCGTTTTCTCTCAGATTAA+AGG | + | chr6.3:19134360-19134379 | MS.gene49842:CDS | 35.0% |
| ! | CAAATAACGGAGATTTCACT+CGG | + | chr6.3:19135071-19135090 | MS.gene49842:CDS | 35.0% |
| ! | CCAATTGGTTTACTTGAAGT+TGG | + | chr6.3:19136197-19136216 | MS.gene49842:CDS | 35.0% |
| ! | CTGTTTTCGTGAACTTCTTT+CGG | + | chr6.3:19137374-19137393 | MS.gene49842:CDS | 35.0% |
| ! | GCGAATTGGTTTAGATTAGT+TGG | + | chr6.3:19136812-19136831 | MS.gene49842:CDS | 35.0% |
| ! | GTTTAAAGGGTTTGTGCTTT+TGG | + | chr6.3:19137303-19137322 | MS.gene49842:CDS | 35.0% |
| !! | ATTCTGTTTGGTAATGTCGT+TGG | + | chr6.3:19137264-19137283 | MS.gene49842:CDS | 35.0% |
| !! | GATTGGAAGCTTTGTTTAGT+TGG | + | chr6.3:19137209-19137228 | MS.gene49842:CDS | 35.0% |
| !! | TTGATGGTTTTCCAACAATG+AGG | + | chr6.3:19137092-19137111 | MS.gene49842:CDS | 35.0% |
| !!! | GGGAAGAGAAGTACTTTTTT+AGG | + | chr6.3:19134261-19134280 | MS.gene49842:CDS | 35.0% |
| !!! | TTGGTGTTTTCGATAATGGA+AGG | + | chr6.3:19136408-19136427 | MS.gene49842:CDS | 35.0% |
| AAATGTCAATTAGTGGGAGC+AGG | - | chr6.3:19136051-19136070 | None:intergenic | 40.0% | |
| AACAACTGATGCTTATGTGG+TGG | + | chr6.3:19136274-19136293 | MS.gene49842:CDS | 40.0% | |
| AAGAACCTAATGCCGAAAGA+CGG | + | chr6.3:19134057-19134076 | MS.gene49842:CDS | 40.0% | |
| AGTCTCAAATACCACAGCTT+GGG | - | chr6.3:19135314-19135333 | None:intergenic | 40.0% | |
| ATCCACCTTCTAAACAAGCA+CGG | - | chr6.3:19136106-19136125 | None:intergenic | 40.0% | |
| ATGACGTCATGATTGCTGTA+TGG | + | chr6.3:19135195-19135214 | MS.gene49842:CDS | 40.0% | |
| CATATCCGTGCTTGTTTAGA+AGG | + | chr6.3:19136098-19136117 | MS.gene49842:CDS | 40.0% | |
| CTCTTCTTTCTTGTCATCAC+CGG | - | chr6.3:19134442-19134461 | None:intergenic | 40.0% | |
| CTTGAATCGGAAAATTCACC+GGG | + | chr6.3:19135170-19135189 | MS.gene49842:CDS | 40.0% | |
| CTTTATGTTAAGGCTCAGCT+TGG | + | chr6.3:19135410-19135429 | MS.gene49842:CDS | 40.0% | |
| GAACTAGGACTATTGTAGAC+CGG | + | chr6.3:19136321-19136340 | MS.gene49842:CDS | 40.0% | |
| GAGGTTTAGGAACAGAATGA+GGG | + | chr6.3:19137000-19137019 | MS.gene49842:CDS | 40.0% | |
| GATGGAATGAGCAATACACA+TGG | + | chr6.3:19136354-19136373 | MS.gene49842:CDS | 40.0% | |
| GATTCAAGCGTATACCATTG+CGG | - | chr6.3:19135158-19135177 | None:intergenic | 40.0% | |
| GCAATGGTATACGCTTGAAT+CGG | + | chr6.3:19135157-19135176 | MS.gene49842:CDS | 40.0% | |
| GCTTGAATCGGAAAATTCAC+CGG | + | chr6.3:19135169-19135188 | MS.gene49842:CDS | 40.0% | |
| GGATGTTTATGATCCTTGCA+CGG | + | chr6.3:19136376-19136395 | MS.gene49842:CDS | 40.0% | |
| GGCGAAATATGGTCCAAAAT+GGG | + | chr6.3:19136295-19136314 | MS.gene49842:CDS | 40.0% | |
| GGTTCAGTTCATGCTTGATT+CGG | + | chr6.3:19136757-19136776 | MS.gene49842:CDS | 40.0% | |
| GTAATTGAATCAGTCGGTGA+TGG | + | chr6.3:19134483-19134502 | MS.gene49842:CDS | 40.0% | |
| GTCATGATTGCTGTATGGAT+TGG | + | chr6.3:19135200-19135219 | MS.gene49842:CDS | 40.0% | |
| GTGTATTGCTCATTCCATCT+CGG | - | chr6.3:19136353-19136372 | None:intergenic | 40.0% | |
| TAGTCTCAAATACCACAGCT+TGG | - | chr6.3:19135315-19135334 | None:intergenic | 40.0% | |
| TATGTTAAACCATTCGGTCC+GGG | + | chr6.3:19136650-19136669 | MS.gene49842:CDS | 40.0% | |
| TCACCGGTAATTGAATCAGT+CGG | + | chr6.3:19134477-19134496 | MS.gene49842:CDS | 40.0% | |
| TCGAGAGGAGATTAGATGAT+CGG | + | chr6.3:19135606-19135625 | MS.gene49842:CDS | 40.0% | |
| TGAACTAAAACCGTTGTTGC+CGG | - | chr6.3:19136899-19136918 | None:intergenic | 40.0% | |
| TGAAGGTAAAGATTGGGATC+AGG | + | chr6.3:19134956-19134975 | MS.gene49842:CDS | 40.0% | |
| TGAGGTTTAGGAACAGAATG+AGG | + | chr6.3:19136999-19137018 | MS.gene49842:CDS | 40.0% | |
| TGGAACAACTGATGCTTATG+TGG | + | chr6.3:19136271-19136290 | MS.gene49842:CDS | 40.0% | |
| TGGCGAAATATGGTCCAAAA+TGG | + | chr6.3:19136294-19136313 | MS.gene49842:CDS | 40.0% | |
| TGTATTGCTCATTCCATCTC+GGG | - | chr6.3:19136352-19136371 | None:intergenic | 40.0% | |
| TTACTTGAAGTTGGGATTCG+TGG | + | chr6.3:19136206-19136225 | MS.gene49842:CDS | 40.0% | |
| TTTATCTTTCTCCCAAGCTG+TGG | + | chr6.3:19135300-19135319 | MS.gene49842:CDS | 40.0% | |
| ! | GCTCCCACTAATTGACATTT+TGG | + | chr6.3:19136051-19136070 | MS.gene49842:intron | 40.0% |
| ! | GCTGTGGTATTTGAGACTAA+CGG | + | chr6.3:19135316-19135335 | MS.gene49842:CDS | 40.0% |
| ! | GTTCGACGACTGTGTTTTAT+TGG | + | chr6.3:19136846-19136865 | MS.gene49842:CDS | 40.0% |
| ! | TCACCGACTGATTCAATTAC+CGG | - | chr6.3:19134483-19134502 | None:intergenic | 40.0% |
| ! | TCTGCTGGAGTTTCTTCTTT+TGG | - | chr6.3:19134594-19134613 | None:intergenic | 40.0% |
| ! | TTTATTATCTGAGGCATCCG+AGG | + | chr6.3:19137332-19137351 | MS.gene49842:CDS | 40.0% |
| ! | TTTTCCAACAATGAGGTCTG+TGG | + | chr6.3:19137099-19137118 | MS.gene49842:CDS | 40.0% |
| ! | TTTTGGATTTGTCTCTGCAC+AGG | + | chr6.3:19136068-19136087 | MS.gene49842:intron | 40.0% |
| !! | TCCGACTTGGAATGAAGATT+TGG | + | chr6.3:19135481-19135500 | MS.gene49842:CDS | 40.0% |
| !! | TCGGATTGGTTTAGTCAACT+CGG | + | chr6.3:19135454-19135473 | MS.gene49842:CDS | 40.0% |
| !! | TCGTTGATTGTTTTACTGCC+AGG | + | chr6.3:19136521-19136540 | MS.gene49842:CDS | 40.0% |
| !! | TCTATGCTGTGCCGTTTAAA+GGG | + | chr6.3:19137290-19137309 | MS.gene49842:CDS | 40.0% |
| !! | TTCTATGCTGTGCCGTTTAA+AGG | + | chr6.3:19137289-19137308 | MS.gene49842:CDS | 40.0% |
| !! | TTGATTCGGATACTCATGTG+TGG | + | chr6.3:19136771-19136790 | MS.gene49842:CDS | 40.0% |
| !! | TTGATTGTTTTACTGCCAGG+TGG | + | chr6.3:19136524-19136543 | MS.gene49842:CDS | 40.0% |
| !!! | CACAGGTTTTTAAAACCGGT+CGG | + | chr6.3:19135435-19135454 | MS.gene49842:CDS | 40.0% |
| !!! | GGTGCACAGGTTTTTAAAAC+CGG | + | chr6.3:19135431-19135450 | MS.gene49842:CDS | 40.0% |
| !!! | GTTTTTAAAACCGGTCGGAT+TGG | + | chr6.3:19135440-19135459 | MS.gene49842:CDS | 40.0% |
| !!! | TACGCGATCGTTGATTTTGA+CGG | + | chr6.3:19134099-19134118 | MS.gene49842:CDS | 40.0% |
| !!! | TGGCTGGGTTTTATTATCTG+AGG | + | chr6.3:19137323-19137342 | MS.gene49842:CDS | 40.0% |
| AACAATGAGGTCTGTGGAAG+TGG | + | chr6.3:19137105-19137124 | MS.gene49842:CDS | 45.0% | |
| AACTCCAGCAGAGAAAACTC+CGG | + | chr6.3:19134602-19134621 | MS.gene49842:CDS | 45.0% | |
| ACATCCTTCGTTTCAGCTAC+CGG | - | chr6.3:19134690-19134709 | None:intergenic | 45.0% | |
| ACTAACGGTTATCCAAACCC+AGG | + | chr6.3:19135331-19135350 | MS.gene49842:CDS | 45.0% | |
| ACTTCCACAGACCTCATTGT+TGG | - | chr6.3:19137106-19137125 | None:intergenic | 45.0% | |
| ATACTCATGTGTGGAGCATG+AGG | + | chr6.3:19136780-19136799 | MS.gene49842:CDS | 45.0% | |
| ATAGTCCATTAGCACCGCAA+TGG | + | chr6.3:19135141-19135160 | MS.gene49842:CDS | 45.0% | |
| ATCCGTGCTTGTTTAGAAGG+TGG | + | chr6.3:19136101-19136120 | MS.gene49842:CDS | 45.0% | |
| ATCCTCGGATCCATGTTCTT+TGG | - | chr6.3:19137028-19137047 | None:intergenic | 45.0% | |
| ATTGATCTCCATCGTCTCAG+AGG | - | chr6.3:19134217-19134236 | None:intergenic | 45.0% | |
| CAAACCCAGGATTTACAGCT+GGG | + | chr6.3:19135344-19135363 | MS.gene49842:CDS | 45.0% | |
| CAAACTTACCATGTCCACGT+AGG | - | chr6.3:19137053-19137072 | None:intergenic | 45.0% | |
| CAATCCCAGCTGTAAATCCT+GGG | - | chr6.3:19135351-19135370 | None:intergenic | 45.0% | |
| CAGGATTTACAGCTGGGATT+GGG | + | chr6.3:19135350-19135369 | MS.gene49842:CDS | 45.0% | |
| CAGTTAACGAAGCCTCCAAT+TGG | + | chr6.3:19136182-19136201 | MS.gene49842:CDS | 45.0% | |
| CATTCCATCTCGGGTTAAAC+CGG | - | chr6.3:19136343-19136362 | None:intergenic | 45.0% | |
| CGACTCCTGAAAAGCTTCAT+CGG | - | chr6.3:19135234-19135253 | None:intergenic | 45.0% | |
| CTACGTGGACATGGTAAGTT+TGG | + | chr6.3:19137051-19137070 | MS.gene49842:CDS | 45.0% | |
| CTTCCGGTGAAAACGAAAGA+CGG | + | chr6.3:19136242-19136261 | MS.gene49842:CDS | 45.0% | |
| GAAAGCTGAAGAGAAGTCAC+CGG | + | chr6.3:19134461-19134480 | MS.gene49842:CDS | 45.0% | |
| GAATGGGGAAAATTCGTGTG+CGG | + | chr6.3:19136456-19136475 | MS.gene49842:CDS | 45.0% | |
| GAGGAGATTAGATGATCGGA+CGG | + | chr6.3:19135610-19135629 | MS.gene49842:CDS | 45.0% | |
| GCAATCATGACGTCATTTCC+CGG | - | chr6.3:19135191-19135210 | None:intergenic | 45.0% | |
| GGTTCGAATCAGGTACGATA+GGG | + | chr6.3:19137126-19137145 | MS.gene49842:CDS | 45.0% | |
| GTTGACTAAACCAATCCGAC+CGG | - | chr6.3:19135453-19135472 | None:intergenic | 45.0% | |
| TAAACTTTCGCTCGTGTCTC+CGG | - | chr6.3:19135284-19135303 | None:intergenic | 45.0% | |
| TAGTAACGGCTCGTTTAGCT+CGG | + | chr6.3:19136708-19136727 | MS.gene49842:CDS | 45.0% | |
| TGGAGCAACGAATCTTCTTC+CGG | + | chr6.3:19136226-19136245 | MS.gene49842:CDS | 45.0% | |
| TGGGAAAACGAAGATCCATG+TGG | + | chr6.3:19135577-19135596 | MS.gene49842:CDS | 45.0% | |
| TGGTTCGAATCAGGTACGAT+AGG | + | chr6.3:19137125-19137144 | MS.gene49842:CDS | 45.0% | |
| TTAACTGCTTCGCAGAAGCA+CGG | - | chr6.3:19136169-19136188 | None:intergenic | 45.0% | |
| TTCCGGTGAAAACGAAAGAC+GGG | + | chr6.3:19136243-19136262 | MS.gene49842:CDS | 45.0% | |
| ! | AAAGGGTTTGTGCTTTTGGC+TGG | + | chr6.3:19137307-19137326 | MS.gene49842:CDS | 45.0% |
| ! | CTCAAAACGTCTTGTTGACC+CGG | - | chr6.3:19136671-19136690 | None:intergenic | 45.0% |
| ! | GCTTATGTGGTGGCGAAATA+TGG | + | chr6.3:19136284-19136303 | MS.gene49842:CDS | 45.0% |
| ! | GGAAGCACGTTTGTGAAAAG+CGG | + | chr6.3:19134300-19134319 | MS.gene49842:CDS | 45.0% |
| ! | GTATACCATTGCGGTGCTAA+TGG | - | chr6.3:19135149-19135168 | None:intergenic | 45.0% |
| ! | GTCCAAAATGGGTTCGAACT+AGG | + | chr6.3:19136306-19136325 | MS.gene49842:CDS | 45.0% |
| ! | GTCCTAGTTCGAACCCATTT+TGG | - | chr6.3:19136311-19136330 | None:intergenic | 45.0% |
| ! | TTTTTCTTCTCATCACCGGC+TGG | - | chr6.3:19134543-19134562 | None:intergenic | 45.0% |
| !! | AAGGGTTTGTGCTTTTGGCT+GGG | + | chr6.3:19137308-19137327 | MS.gene49842:CDS | 45.0% |
| !! | AATGAGGGTGCCAAAGAACA+TGG | + | chr6.3:19137015-19137034 | MS.gene49842:CDS | 45.0% |
| !! | AGGTCATTGACTCTTGGTCA+AGG | - | chr6.3:19134197-19134216 | None:intergenic | 45.0% |
| !! | ATGAAGCTTTTCAGGAGTCG+TGG | + | chr6.3:19135234-19135253 | MS.gene49842:CDS | 45.0% |
| !! | TCTCAGAGGTCATTGACTCT+TGG | - | chr6.3:19134203-19134222 | None:intergenic | 45.0% |
| !! | TTACCTGTTACCGATTCAGC+CGG | + | chr6.3:19134420-19134439 | MS.gene49842:CDS | 45.0% |
| AAAACGAAAGACGGGACACG+TGG | + | chr6.3:19136251-19136270 | MS.gene49842:CDS | 50.0% | |
| AAGCTTCCAATCTCTCACCC+TGG | - | chr6.3:19137201-19137220 | None:intergenic | 50.0% | |
| ACCACTTCTGAACCCAAAGC+CGG | - | chr6.3:19136740-19136759 | None:intergenic | 50.0% | |
| ACCGGAGGTTGTTAATCCAC+CGG | + | chr6.3:19134668-19134687 | MS.gene49842:CDS | 50.0% | |
| AGCTTCCAATCTCTCACCCT+GGG | - | chr6.3:19137200-19137219 | None:intergenic | 50.0% | |
| AGGACTCCGAACCTTAGGTT+CGG | - | chr6.3:19135387-19135406 | None:intergenic | 50.0% | |
| AGTTCAGGACTCCGAACCTT+AGG | - | chr6.3:19135392-19135411 | None:intergenic | 50.0% | |
| AGTTCCGAAGAGAGTTCCAC+CGG | + | chr6.3:19135118-19135137 | MS.gene49842:CDS | 50.0% | |
| ATGTCCACGTAGGACATCCT+CGG | - | chr6.3:19137043-19137062 | None:intergenic | 50.0% | |
| CAAACATCGCTGTAGCACGT+GGG | - | chr6.3:19137240-19137259 | None:intergenic | 50.0% | |
| CCAAACCCAGGATTTACAGC+TGG | + | chr6.3:19135343-19135362 | MS.gene49842:CDS | 50.0% | |
| CCAATCCCAGCTGTAAATCC+TGG | - | chr6.3:19135352-19135371 | None:intergenic | 50.0% | |
| CCAATTGTGAGAACCGTGCA+AGG | - | chr6.3:19136392-19136411 | None:intergenic | 50.0% | |
| CCAGCTGTAAATCCTGGGTT+TGG | - | chr6.3:19135346-19135365 | None:intergenic | 50.0% | |
| CCAGGATTTACAGCTGGGAT+TGG | + | chr6.3:19135349-19135368 | MS.gene49842:CDS | 50.0% | |
| CCTTGCACGGTTCTCACAAT+TGG | + | chr6.3:19136389-19136408 | MS.gene49842:CDS | 50.0% | |
| CTAATGCCGAAAGACGGTCA+AGG | + | chr6.3:19134063-19134082 | MS.gene49842:CDS | 50.0% | |
| CTATCCGGTGGAACTCTCTT+CGG | - | chr6.3:19135125-19135144 | None:intergenic | 50.0% | |
| CTGTGGAAGTGGTTCGAATC+AGG | + | chr6.3:19137116-19137135 | MS.gene49842:CDS | 50.0% | |
| CTTGACCGTCTTTCGGCATT+AGG | - | chr6.3:19134065-19134084 | None:intergenic | 50.0% | |
| GATTTACAGCTGGGATTGGG+TGG | + | chr6.3:19135353-19135372 | MS.gene49842:CDS | 50.0% | |
| GCTGTTCCTTGACCGTCTTT+CGG | - | chr6.3:19134072-19134091 | None:intergenic | 50.0% | |
| GGACGGATGTGAAATCGAGA+TGG | + | chr6.3:19135627-19135646 | MS.gene49842:CDS | 50.0% | |
| GGATTCCGGTGGTTTGATAC+CGG | + | chr6.3:19135262-19135281 | MS.gene49842:CDS | 50.0% | |
| GGATTTGTCTCTGCACAGGT+AGG | + | chr6.3:19136072-19136091 | MS.gene49842:intron | 50.0% | |
| GTTAGATGGGATTCGCACGT+GGG | + | chr6.3:19136868-19136887 | MS.gene49842:CDS | 50.0% | |
| TCAACTCGGCTAATCCGACT+TGG | + | chr6.3:19135468-19135487 | MS.gene49842:CDS | 50.0% | |
| TCGAGTTTCTCGTCCCATTG+AGG | - | chr6.3:19134165-19134184 | None:intergenic | 50.0% | |
| TGCCAAAGAACATGGATCCG+AGG | + | chr6.3:19137023-19137042 | MS.gene49842:CDS | 50.0% | |
| TGTCTCCGGTATCAAACCAC+CGG | - | chr6.3:19135270-19135289 | None:intergenic | 50.0% | |
| ! | CTTGTCATCACCGGCTGAAT+CGG | - | chr6.3:19134433-19134452 | None:intergenic | 50.0% |
| ! | GCAAGCCGATGAAGCTTTTC+AGG | + | chr6.3:19135226-19135245 | MS.gene49842:CDS | 50.0% |
| ! | GGGAGGGCACAAAGTTTGAT+TGG | + | chr6.3:19137163-19137182 | MS.gene49842:CDS | 50.0% |
| ! | GTCCCGTCTTTCGTTTTCAC+CGG | - | chr6.3:19136248-19136267 | None:intergenic | 50.0% |
| ! | TAGACCGGTTTAACCCGAGA+TGG | + | chr6.3:19136336-19136355 | MS.gene49842:CDS | 50.0% |
| ! | TCGTTTAGCTCGGTCTGAAC+CGG | + | chr6.3:19136718-19136737 | MS.gene49842:CDS | 50.0% |
| !! | ACCGGTGGATTAACAACCTC+CGG | - | chr6.3:19134672-19134691 | None:intergenic | 50.0% |
| !! | GTCAATGACCTCTGAGACGA+TGG | + | chr6.3:19134206-19134225 | MS.gene49842:CDS | 50.0% |
| !! | TGCGGTGCTAATGGACTATC+CGG | - | chr6.3:19135140-19135159 | None:intergenic | 50.0% |
| !! | TTTTCAGGAGTCGTGGCAGT+CGG | + | chr6.3:19135241-19135260 | MS.gene49842:CDS | 50.0% |
| AAATCCACCGGCGAATCCAC+CGG | + | chr6.3:19134632-19134651 | MS.gene49842:CDS | 55.0% | |
| ACAGCTGGGATTGGGTGGTT+TGG | + | chr6.3:19135358-19135377 | MS.gene49842:CDS | 55.0% | |
| AGCAGAGAAAACTCCGGCAC+CGG | + | chr6.3:19134608-19134627 | MS.gene49842:CDS | 55.0% | |
| CAGAGATCGAAGCAGAAGCG+CGG | + | chr6.3:19134794-19134813 | MS.gene49842:CDS | 55.0% | |
| CAGCTGGGATTGGGTGGTTT+GGG | + | chr6.3:19135359-19135378 | MS.gene49842:CDS | 55.0% | |
| GAGGATGTCCTACGTGGACA+TGG | + | chr6.3:19137042-19137061 | MS.gene49842:CDS | 55.0% | |
| GATTCGCACGTGGGTGAATC+CGG | + | chr6.3:19136877-19136896 | MS.gene49842:CDS | 55.0% | |
| GCAAACATCGCTGTAGCACG+TGG | - | chr6.3:19137241-19137260 | None:intergenic | 55.0% | |
| GGATTAACAACCTCCGGTGC+AGG | - | chr6.3:19134666-19134685 | None:intergenic | 55.0% | |
| GGCATGTCACCACGAAACCT+CGG | - | chr6.3:19137352-19137371 | None:intergenic | 55.0% | |
| GGTTAGATGGGATTCGCACG+TGG | + | chr6.3:19136867-19136886 | MS.gene49842:CDS | 55.0% | |
| GTGGGTGAATCCGGCAACAA+CGG | + | chr6.3:19136886-19136905 | MS.gene49842:CDS | 55.0% | |
| TCCACCGGTAGCTGAAACGA+AGG | + | chr6.3:19134683-19134702 | MS.gene49842:CDS | 55.0% | |
| TCCTTCGTTTCAGCTACCGG+TGG | - | chr6.3:19134687-19134706 | None:intergenic | 55.0% | |
| TCTTGTTGACCCGGACCGAA+TGG | - | chr6.3:19136662-19136681 | None:intergenic | 55.0% | |
| TGGGCTCCGAACCTAAGGTT+CGG | + | chr6.3:19135378-19135397 | MS.gene49842:CDS | 55.0% | |
| TTAACAACCTCCGGTGCAGG+CGG | - | chr6.3:19134663-19134682 | None:intergenic | 55.0% | |
| ! | CTTCTCATCACCGGCTGGTT+CGG | - | chr6.3:19134538-19134557 | None:intergenic | 55.0% |
| ! | TCACCGGCTGAATCGGTAAC+AGG | - | chr6.3:19134426-19134445 | None:intergenic | 55.0% |
| ! | TGGTTTGGGCTCCGAACCTA+AGG | + | chr6.3:19135373-19135392 | MS.gene49842:CDS | 55.0% |
| ! | TTTTACTGCCAGGTGGTGCG+AGG | + | chr6.3:19136531-19136550 | MS.gene49842:CDS | 55.0% |
| !! | ACCGGCTTTGGGTTCAGAAG+TGG | + | chr6.3:19136736-19136755 | MS.gene49842:CDS | 55.0% |
| !! | GGATTCGCCGGTGGATTTTC+CGG | - | chr6.3:19134630-19134649 | None:intergenic | 55.0% |
| !! | GGTGCTAATGGACTATCCGG+TGG | - | chr6.3:19135137-19135156 | None:intergenic | 55.0% |
| !! | TAAGGCTCAGCTTGGTGCAC+AGG | + | chr6.3:19135418-19135437 | MS.gene49842:CDS | 55.0% |
| ATAGGGTGCGTGCTCTTGCG+GGG | + | chr6.3:19137143-19137162 | MS.gene49842:CDS | 60.0% | |
| ATTGGCGACGTTGCAGCCCA+GGG | + | chr6.3:19137181-19137200 | MS.gene49842:CDS | 60.0% | |
| CCAGGTGGTGCGAGGAGAAT+GGG | + | chr6.3:19136539-19136558 | MS.gene49842:CDS | 60.0% | |
| CGATAGGGTGCGTGCTCTTG+CGG | + | chr6.3:19137141-19137160 | MS.gene49842:CDS | 60.0% | |
| GAGTCGTGGCAGTCGGATTC+CGG | + | chr6.3:19135248-19135267 | MS.gene49842:CDS | 60.0% | |
| GATAGGGTGCGTGCTCTTGC+GGG | + | chr6.3:19137142-19137161 | MS.gene49842:CDS | 60.0% | |
| GGATCCGAGGATGTCCTACG+TGG | + | chr6.3:19137036-19137055 | MS.gene49842:CDS | 60.0% | |
| TCCTCTCGATCGACGCCACA+TGG | - | chr6.3:19135595-19135614 | None:intergenic | 60.0% | |
| TGCAGCCCAGGGTGAGAGAT+TGG | + | chr6.3:19137192-19137211 | MS.gene49842:CDS | 60.0% | |
| ! | AGCTCGGTCTGAACCGGCTT+TGG | + | chr6.3:19136724-19136743 | MS.gene49842:CDS | 60.0% |
| ! | CTGAGGCATCCGAGGTTTCG+TGG | + | chr6.3:19137340-19137359 | MS.gene49842:CDS | 60.0% |
| ! | GCTCGGTCTGAACCGGCTTT+GGG | + | chr6.3:19136725-19136744 | MS.gene49842:CDS | 60.0% |
| ! | TCCGGCACCGGAAAATCCAC+CGG | + | chr6.3:19134620-19134639 | MS.gene49842:CDS | 60.0% |
| !! | GGTGCCGGAGTTTTCTCTGC+TGG | - | chr6.3:19134609-19134628 | None:intergenic | 60.0% |
| !! | TCACCGGCTGGTTCGGTTAC+CGG | - | chr6.3:19134531-19134550 | None:intergenic | 60.0% |
| !! | TCCATGTGGCGTCGATCGAG+AGG | + | chr6.3:19135591-19135610 | MS.gene49842:CDS | 60.0% |
| CCACCGGTAACCGAACCAGC+CGG | + | chr6.3:19134525-19134544 | MS.gene49842:CDS | 65.0% | |
| CCCATTCTCCTCGCACCACC+TGG | - | chr6.3:19136542-19136561 | None:intergenic | 65.0% | |
| GATTGGCGACGTTGCAGCCC+AGG | + | chr6.3:19137180-19137199 | MS.gene49842:CDS | 65.0% | |
| GCCAGGTGGTGCGAGGAGAA+TGG | + | chr6.3:19136538-19136557 | MS.gene49842:CDS | 65.0% | |
| TCGTGGCAGTCGGATTCCGG+TGG | + | chr6.3:19135251-19135270 | MS.gene49842:CDS | 65.0% | |
| ! | GGAGTTGCCGGTGGATTCGC+CGG | - | chr6.3:19134642-19134661 | None:intergenic | 65.0% |
| !! | GCCGGTGGATTTTCCGGTGC+CGG | - | chr6.3:19134624-19134643 | None:intergenic | 65.0% |
| ACCGGCAACTCCGCCTGCAC+CGG | + | chr6.3:19134650-19134669 | MS.gene49842:CDS | 70.0% | |
| GGTGCGTGCTCTTGCGGGGA+GGG | + | chr6.3:19137147-19137166 | MS.gene49842:CDS | 70.0% | |
| TCCGGTGCAGGCGGAGTTGC+CGG | - | chr6.3:19134654-19134673 | None:intergenic | 70.0% | |
| ! | GTTGCCGGTGGATTCGCCGG+TGG | - | chr6.3:19134639-19134658 | None:intergenic | 70.0% |
| !! | CCGGCTGGTTCGGTTACCGG+TGG | - | chr6.3:19134528-19134547 | None:intergenic | 70.0% |
| GGCAACTCCGCCTGCACCGG+AGG | + | chr6.3:19134653-19134672 | MS.gene49842:CDS | 75.0% | |
| GGGTGCGTGCTCTTGCGGGG+AGG | + | chr6.3:19137146-19137165 | MS.gene49842:CDS | 75.0% | |
| GGTGCAGGCGGAGTTGCCGG+TGG | - | chr6.3:19134651-19134670 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 19134029 | 19137429 | 19134029 | ID=MS.gene49842 |
| chr6.3 | mRNA | 19134029 | 19137429 | 19134029 | ID=MS.gene49842.t1;Parent=MS.gene49842 |
| chr6.3 | exon | 19134029 | 19135689 | 19134029 | ID=MS.gene49842.t1.exon1;Parent=MS.gene49842.t1 |
| chr6.3 | CDS | 19134029 | 19135689 | 19134029 | ID=cds.MS.gene49842.t1;Parent=MS.gene49842.t1 |
| chr6.3 | exon | 19136090 | 19137429 | 19136090 | ID=MS.gene49842.t1.exon2;Parent=MS.gene49842.t1 |
| chr6.3 | CDS | 19136090 | 19137429 | 19136090 | ID=cds.MS.gene49842.t1;Parent=MS.gene49842.t1 |
| Gene Sequence |
| Protein sequence |
