Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49902.t1 | AEV52291.2 | 100 | 303 | 0 | 0 | 1 | 303 | 1 | 303 | 2.80E-42 | 182.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49902.t1 | P28641 | 87.5 | 32 | 2 | 2 | 267 | 298 | 203 | 232 | 2.5e-07 | 57.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49902.t1 | G9FYZ7 | 100.0 | 303 | 0 | 0 | 1 | 303 | 1 | 303 | 2.0e-42 | 182.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05474 | MS.gene49902 | 0.883345 | 4.85E-71 | -1.69E-46 |
| MS.gene058490 | MS.gene49902 | 0.822835 | 1.91E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49902.t1 | MTR_6g084640 | 45.198 | 177 | 42 | 5 | 108 | 237 | 144 | 312 | 2.87e-16 | 78.2 |
| MS.gene49902.t1 | MTR_6g084640 | 93.182 | 44 | 1 | 2 | 1 | 42 | 1 | 44 | 1.93e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 125 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTACTGAACAAAATATTTA+TGG | 0.176291 | 6.4:-58386005 | MS.gene49902:CDS |
| AGGGATTATGGAAAAGATTA+AGG | 0.301097 | 6.4:-58385817 | MS.gene49902:CDS |
| AAAATTCCTGGCACTGGAAC+TGG | 0.317217 | 6.4:-58386296 | MS.gene49902:CDS |
| ACTGGTAGGGTTGATGAATA+TGG | 0.317246 | 6.4:-58387063 | MS.gene49902:CDS |
| AGGAGCTGCGGACAAGATTA+AGG | 0.318692 | 6.4:-58386039 | MS.gene49902:CDS |
| AAGATTCCTGGCACTGGAAC+TGG | 0.323822 | 6.4:-58386155 | MS.gene49902:CDS |
| CCTGGCACTGGAACTGGAAC+TGG | 0.334665 | 6.4:-58386149 | MS.gene49902:CDS |
| CCTGGCACTGGAACTGGAAC+TGG | 0.334665 | 6.4:-58386290 | MS.gene49902:CDS |
| GCAGGTGGTGTAGGTGGTTA+TGG | 0.340603 | 6.4:-58386422 | MS.gene49902:intron |
| AGTCATCCCACCACCACTAA+TGG | 0.343093 | 6.4:+58386999 | None:intergenic |
| AGCTCCATAGCCGGTTGTTT+CGG | 0.348713 | 6.4:+58386373 | None:intergenic |
| GGAGCTACAGGTGGCGGAAC+TGG | 0.372221 | 6.4:-58386356 | MS.gene49902:CDS |
| ACAGGTACTGGTACAGGATA+TGG | 0.372996 | 6.4:-58386913 | MS.gene49902:CDS |
| AACATTAAGGAGAAAATTCC+TGG | 0.375833 | 6.4:-58386308 | MS.gene49902:CDS |
| ACAGGAACTGGAACTGGAAC+TGG | 0.381261 | 6.4:-58385975 | MS.gene49902:CDS |
| ACTGGAACTGGAACTGGAAC+TGG | 0.383890 | 6.4:-58385969 | MS.gene49902:CDS |
| GTACTGAACAAAATATTTAT+GGG | 0.388760 | 6.4:-58386004 | MS.gene49902:CDS |
| GGAAGCACTGGACAAGAGTA+TGG | 0.391237 | 6.4:-58385888 | MS.gene49902:CDS |
| AATATTTATGGGACAGGAAC+AGG | 0.392831 | 6.4:-58385993 | MS.gene49902:CDS |
| AGGGGTAGTGGACAACATTA+AGG | 0.403867 | 6.4:-58386321 | MS.gene49902:CDS |
| ACTGGAACTGGAACTGGAAC+AGG | 0.408098 | 6.4:-58386143 | MS.gene49902:CDS |
| ACTGGAACTGGAACTGGAAC+AGG | 0.408098 | 6.4:-58386284 | MS.gene49902:CDS |
| CAAGGCCAAGTTGATCAATA+TGG | 0.416063 | 6.4:-58387027 | MS.gene49902:CDS |
| ACTGGACATGGGACAGGAAC+AGG | 0.419165 | 6.4:-58385951 | MS.gene49902:CDS |
| CATATTGATCAACTTGGCCT+TGG | 0.419277 | 6.4:+58387028 | None:intergenic |
| AAGATCAAGGAGAAGATTCC+TGG | 0.420374 | 6.4:-58386167 | MS.gene49902:CDS |
| GGTGGGATGACTGGTGCTAC+TGG | 0.426647 | 6.4:-58386988 | MS.gene49902:CDS |
| TATGGGACAGGAACAGGAAC+TGG | 0.427579 | 6.4:-58385987 | MS.gene49902:CDS |
| CAACTCCATGATGTTGTTGA+TGG | 0.429936 | 6.4:+58386956 | None:intergenic |
| ATCAACTTGGCCTTGGCTCA+AGG | 0.433377 | 6.4:+58387035 | None:intergenic |
| GGCAATCCCATTAGTGGTGG+TGG | 0.433710 | 6.4:-58387006 | MS.gene49902:CDS |
| ACAGGAACAGGAACTGGAAC+TGG | 0.440479 | 6.4:-58385939 | MS.gene49902:CDS |
| ACAGGAACAGGAACTGGAAC+TGG | 0.440479 | 6.4:-58385981 | MS.gene49902:CDS |
| CATGGGACAGGAACAGGAAC+TGG | 0.444531 | 6.4:-58385945 | MS.gene49902:CDS |
| GTCATCCCACCACCACTAAT+GGG | 0.445577 | 6.4:+58387000 | None:intergenic |
| AAGATTAAGGAGAAGATTCC+TGG | 0.445930 | 6.4:-58385804 | MS.gene49902:CDS |
| GGAACAGGTCGTGGAACAAC+TGG | 0.455989 | 6.4:-58386128 | MS.gene49902:CDS |
| GGAACAGGTCGTGGAACAAC+TGG | 0.455989 | 6.4:-58386269 | MS.gene49902:CDS |
| TCAACTTGGCCTTGGCTCAA+GGG | 0.457612 | 6.4:+58387036 | None:intergenic |
| CAACTTGGCCTTGGCTCAAG+GGG | 0.457999 | 6.4:+58387037 | None:intergenic |
| ACAACTGGTTATGGTGATAC+TGG | 0.463302 | 6.4:-58386113 | MS.gene49902:CDS |
| ACAACTGGTTATGGTGATAC+TGG | 0.463302 | 6.4:-58386254 | MS.gene49902:CDS |
| ATTAGTGGTGGTGGGATGAC+TGG | 0.468498 | 6.4:-58386997 | MS.gene49902:CDS |
| AAGATTAAGGAGAAGATTCC+TGG | 0.468840 | 6.4:-58386026 | MS.gene49902:CDS |
| AAGGAGAAGATTCCTGGTAC+TGG | 0.469022 | 6.4:-58385798 | MS.gene49902:CDS |
| TATGGAACACACGCTGGTAG+TGG | 0.469062 | 6.4:-58386895 | MS.gene49902:CDS |
| CCAGTTCCAGTTCCAGTGCC+AGG | 0.475451 | 6.4:+58386149 | None:intergenic |
| CCAGTTCCAGTTCCAGTGCC+AGG | 0.475451 | 6.4:+58386290 | None:intergenic |
| ACTGGAACTGGAACTGGACA+TGG | 0.475800 | 6.4:-58385963 | MS.gene49902:CDS |
| CAACAAGGTGGTGATCAAAC+TGG | 0.483657 | 6.4:-58387081 | MS.gene49902:CDS |
| ATGGAACACACGCTGGTAGT+GGG | 0.484220 | 6.4:-58386894 | MS.gene49902:CDS |
| ATGGAGTTGACACAGGTGTT+GGG | 0.485196 | 6.4:-58386942 | MS.gene49902:CDS |
| CATGGACATGGAACAACTAC+TGG | 0.485597 | 6.4:-58385915 | MS.gene49902:CDS |
| ATAGCCGGTTGTTTCGGTTC+CGG | 0.485976 | 6.4:+58386379 | None:intergenic |
| AAGGAGAAAATTCCTGGCAC+TGG | 0.489221 | 6.4:-58386302 | MS.gene49902:CDS |
| ACTGGAACTGGAACAGGTCG+TGG | 0.491588 | 6.4:-58386137 | MS.gene49902:CDS |
| ACTGGAACTGGAACAGGTCG+TGG | 0.491588 | 6.4:-58386278 | MS.gene49902:CDS |
| GGTACTGATATTGATGGAAC+CGG | 0.503949 | 6.4:-58386398 | MS.gene49902:CDS |
| GGTCGTGGAACAACTGGTTA+TGG | 0.505394 | 6.4:-58386122 | MS.gene49902:CDS |
| GGTCGTGGAACAACTGGTTA+TGG | 0.505394 | 6.4:-58386263 | MS.gene49902:CDS |
| CCAGTACATGATCCAGTACC+AGG | 0.505527 | 6.4:+58385786 | None:intergenic |
| ATGACTGGTGCTACTGGTCA+TGG | 0.507846 | 6.4:-58386982 | MS.gene49902:CDS |
| CATGGAACAACTACTGGCTA+TGG | 0.511666 | 6.4:-58385909 | MS.gene49902:CDS |
| AGGAGTTGTGGACAAGATCA+AGG | 0.513775 | 6.4:-58386180 | MS.gene49902:CDS |
| CATGGAGTTGACACAGGTGT+TGG | 0.513839 | 6.4:-58386943 | MS.gene49902:CDS |
| GGAACCGGAACCGAAACAAC+CGG | 0.515006 | 6.4:-58386383 | MS.gene49902:CDS |
| CAATATGGCAATCCCATTAG+TGG | 0.515585 | 6.4:-58387012 | MS.gene49902:CDS |
| ATATCTAATGCAGGTGGTGT+AGG | 0.516341 | 6.4:-58386431 | MS.gene49902:intron |
| CCTGGTACTGGATCATGTAC+TGG | 0.516603 | 6.4:-58385786 | MS.gene49902:CDS |
| GGAACCGAAACAACCGGCTA+TGG | 0.519291 | 6.4:-58386377 | MS.gene49902:CDS |
| ACATGATAACAGAGGGGTAG+TGG | 0.519568 | 6.4:-58386333 | MS.gene49902:CDS |
| GGTGTTGGTCAAGGAACAAC+TGG | 0.521239 | 6.4:-58386092 | MS.gene49902:CDS |
| GGTGTTGGTCAAGGAACAAC+TGG | 0.521239 | 6.4:-58386233 | MS.gene49902:CDS |
| AAGGAGAAGATTCCTGGCAC+TGG | 0.522026 | 6.4:-58386161 | MS.gene49902:CDS |
| ACTGGAACTGGACATGGGAC+AGG | 0.527658 | 6.4:-58385957 | MS.gene49902:CDS |
| GTTGGGAGCAACACAGGTAC+TGG | 0.531031 | 6.4:-58386925 | MS.gene49902:CDS |
| CAACAACATGGAGAAAATAG+AGG | 0.532385 | 6.4:-58386200 | MS.gene49902:CDS |
| TATGGAAAAGAGGGTCATCA+TGG | 0.533254 | 6.4:-58385870 | MS.gene49902:CDS |
| ACTACTGGCTATGGAAGCAC+TGG | 0.536598 | 6.4:-58385900 | MS.gene49902:CDS |
| AGCAACACAGGTACTGGTAC+AGG | 0.538724 | 6.4:-58386919 | MS.gene49902:CDS |
| GAACAAAATATTTATGGGAC+AGG | 0.539035 | 6.4:-58385999 | MS.gene49902:CDS |
| TGGAACACACGCTGGTAGTG+GGG | 0.539678 | 6.4:-58386893 | MS.gene49902:CDS |
| GATTGCCATATTGATCAACT+TGG | 0.539982 | 6.4:+58387022 | None:intergenic |
| GCCACCTGTAGCTCCATAGC+CGG | 0.542385 | 6.4:+58386364 | None:intergenic |
| GGCTATGGAGCTACAGGTGG+CGG | 0.544468 | 6.4:-58386362 | MS.gene49902:CDS |
| TGGACAAGAGTATGGAAAAG+AGG | 0.546793 | 6.4:-58385880 | MS.gene49902:CDS |
| GGAACACACGCTGGTAGTGG+GGG | 0.547642 | 6.4:-58386892 | MS.gene49902:CDS |
| CAACAACATGGAGATAATAG+AGG | 0.547854 | 6.4:-58386059 | MS.gene49902:CDS |
| TGGAGAAAATAGAGGAGTTG+TGG | 0.548338 | 6.4:-58386192 | MS.gene49902:CDS |
| ACAACCGGCTATGGAGCTAC+AGG | 0.548340 | 6.4:-58386368 | MS.gene49902:CDS |
| ACAGGAACTGGAACTGGACA+TGG | 0.549389 | 6.4:-58385933 | MS.gene49902:CDS |
| TATGGAGGTACTGATATTGA+TGG | 0.550785 | 6.4:-58386404 | MS.gene49902:CDS |
| GAACACACGCTGGTAGTGGG+GGG | 0.566026 | 6.4:-58386891 | MS.gene49902:CDS |
| ACAGGTGTTGGGAGCAACAC+AGG | 0.578588 | 6.4:-58386931 | MS.gene49902:CDS |
| ACTGGAACTGGACATGGACA+TGG | 0.588993 | 6.4:-58385927 | MS.gene49902:CDS |
| AACACACGCTGGTAGTGGGG+GGG | 0.589672 | 6.4:-58386890 | MS.gene49902:CDS |
| GGACACCATCAACAACATCA+TGG | 0.598586 | 6.4:-58386961 | MS.gene49902:CDS |
| TATGGAAACCCCTTGAGCCA+AGG | 0.599812 | 6.4:-58387045 | MS.gene49902:CDS |
| AAGGTGGTGATCAAACTGGT+AGG | 0.600281 | 6.4:-58387077 | MS.gene49902:CDS |
| GGACAAGAGTATGGAAAAGA+GGG | 0.606312 | 6.4:-58385879 | MS.gene49902:CDS |
| TCTAATGCAGGTGGTGTAGG+TGG | 0.606328 | 6.4:-58386428 | MS.gene49902:intron |
| CTGGAACTGGAACTGGACAT+GGG | 0.610777 | 6.4:-58385962 | MS.gene49902:CDS |
| GGTGATACTGGTGTTGGTCA+AGG | 0.612946 | 6.4:-58386101 | MS.gene49902:CDS |
| GGTGATACTGGTGTTGGTCA+AGG | 0.612946 | 6.4:-58386242 | MS.gene49902:CDS |
| GGTGGTGTAGGTGGTTATGG+AGG | 0.618119 | 6.4:-58386419 | MS.gene49902:CDS |
| GGTTATGGTGATACTGGTGT+TGG | 0.623712 | 6.4:-58386107 | MS.gene49902:CDS |
| GGTTATGGTGATACTGGTGT+TGG | 0.623712 | 6.4:-58386248 | MS.gene49902:CDS |
| GAACTGGACATGATAACAGA+GGG | 0.628252 | 6.4:-58386340 | MS.gene49902:CDS |
| AGGTGGTGATCAAACTGGTA+GGG | 0.630608 | 6.4:-58387076 | MS.gene49902:CDS |
| GGTCAAGGAACAACTGGTGT+TGG | 0.634078 | 6.4:-58386086 | MS.gene49902:CDS |
| GGTCAAGGAACAACTGGTGT+TGG | 0.634078 | 6.4:-58386227 | MS.gene49902:CDS |
| GCAATCCCATTAGTGGTGGT+GGG | 0.635724 | 6.4:-58387005 | MS.gene49902:CDS |
| CAACATCATGGAGTTGACAC+AGG | 0.644345 | 6.4:-58386949 | MS.gene49902:CDS |
| TGGAGATAATAGAGGAGCTG+CGG | 0.652727 | 6.4:-58386051 | MS.gene49902:CDS |
| ACTGGATCATGTACTGGACA+TGG | 0.658437 | 6.4:-58385780 | MS.gene49902:CDS |
| TATGGCAATCCCATTAGTGG+TGG | 0.666004 | 6.4:-58387009 | MS.gene49902:CDS |
| ACCGGCTATGGAGCTACAGG+TGG | 0.667930 | 6.4:-58386365 | MS.gene49902:CDS |
| GGACATGATGAGCAACACCT+TGG | 0.668375 | 6.4:-58385849 | MS.gene49902:CDS |
| GGTGTTGGTCATCAACAACA+TGG | 0.679464 | 6.4:-58386071 | MS.gene49902:CDS |
| GGTGTTGGTCATCAACAACA+TGG | 0.679464 | 6.4:-58386212 | MS.gene49902:CDS |
| ACAGGATATGGAACACACGC+TGG | 0.687164 | 6.4:-58386901 | MS.gene49902:CDS |
| GGAACTGGACATGATAACAG+AGG | 0.719077 | 6.4:-58386341 | MS.gene49902:CDS |
| ACAATGTCTCAATATCAACA+AGG | 0.721195 | 6.4:-58387096 | MS.gene49902:CDS |
| ATGTCTCAATATCAACAAGG+TGG | 0.725256 | 6.4:-58387093 | MS.gene49902:CDS |
| AACTGGACATGATAACAGAG+GGG | 0.772871 | 6.4:-58386339 | MS.gene49902:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCGATAAAAAAAAAAAAAT+TGG | + | chr6.4:58386168-58386187 | None:intergenic | 10.0% |
| !! | TTTCAAATTCAAATGATTAT+CGG | - | chr6.4:58386337-58386356 | MS.gene49902:CDS | 15.0% |
| !! | TTTGAAAAAAAATAGTAACA+TGG | + | chr6.4:58386324-58386343 | None:intergenic | 15.0% |
| !! | ATATTGTCCAAATTTAATGT+CGG | + | chr6.4:58386239-58386258 | None:intergenic | 20.0% |
| !! | GTACTGAACAAAATATTTAT+GGG | - | chr6.4:58386853-58386872 | MS.gene49902:intron | 20.0% |
| ! | ATTACATCCGACATTAAATT+TGG | - | chr6.4:58386229-58386248 | MS.gene49902:CDS | 25.0% |
| ! | CTAACATTTATATCTAATGC+AGG | - | chr6.4:58386417-58386436 | MS.gene49902:CDS | 25.0% |
| ! | TCACATAATTCTAACTCAAA+TGG | - | chr6.4:58386133-58386152 | MS.gene49902:CDS | 25.0% |
| !! | GGTACTGAACAAAATATTTA+TGG | - | chr6.4:58386852-58386871 | MS.gene49902:intron | 25.0% |
| !! | TAAATATTTTGTTCAGTACC+AGG | + | chr6.4:58386852-58386871 | None:intergenic | 25.0% |
| AACATTAAGGAGAAAATTCC+TGG | - | chr6.4:58386549-58386568 | MS.gene49902:intron | 30.0% | |
| ACATTTATATCTAATGCAGG+TGG | - | chr6.4:58386420-58386439 | MS.gene49902:CDS | 30.0% | |
| AGGGATTATGGAAAAGATTA+AGG | - | chr6.4:58387040-58387059 | MS.gene49902:CDS | 30.0% | |
| GAACAAAATATTTATGGGAC+AGG | - | chr6.4:58386858-58386877 | MS.gene49902:intron | 30.0% | |
| TAGACTAATTAGTTACCTGT+GGG | + | chr6.4:58385995-58386014 | None:intergenic | 30.0% | |
| TTAGACTAATTAGTTACCTG+TGG | + | chr6.4:58385996-58386015 | None:intergenic | 30.0% | |
| AACACCTTGGTGAGAAAAAA+GGG | - | chr6.4:58387021-58387040 | MS.gene49902:CDS | 35.0% | |
| AAGATTAAGGAGAAGATTCC+TGG | - | chr6.4:58386831-58386850 | MS.gene49902:intron | 35.0% | |
| AATATTTATGGGACAGGAAC+AGG | - | chr6.4:58386864-58386883 | MS.gene49902:intron | 35.0% | |
| ATGTCTCAATATCAACAAGG+TGG | - | chr6.4:58385764-58385783 | MS.gene49902:CDS | 35.0% | |
| CAACAACATGGAGAAAATAG+AGG | - | chr6.4:58386657-58386676 | MS.gene49902:intron | 35.0% | |
| CAACAACATGGAGATAATAG+AGG | - | chr6.4:58386798-58386817 | MS.gene49902:intron | 35.0% | |
| GATTGCCATATTGATCAACT+TGG | + | chr6.4:58385838-58385857 | None:intergenic | 35.0% | |
| TATGAACACTGAACACGATA+CGG | - | chr6.4:58386092-58386111 | MS.gene49902:CDS | 35.0% | |
| TCTAACTCAAATGGTAGCTA+GGG | - | chr6.4:58386142-58386161 | MS.gene49902:CDS | 35.0% | |
| TGGTGAGAAAAAAGGGATTA+TGG | - | chr6.4:58387028-58387047 | MS.gene49902:CDS | 35.0% | |
| TTCTAACTCAAATGGTAGCT+AGG | - | chr6.4:58386141-58386160 | MS.gene49902:CDS | 35.0% | |
| !! | TATGGAGGTACTGATATTGA+TGG | - | chr6.4:58386453-58386472 | MS.gene49902:intron | 35.0% |
| !!! | TAATCCCTTTTTTCTCACCA+AGG | + | chr6.4:58387028-58387047 | None:intergenic | 35.0% |
| AACTGGACATGATAACAGAG+GGG | - | chr6.4:58386518-58386537 | MS.gene49902:intron | 40.0% | |
| AAGATCAAGGAGAAGATTCC+TGG | - | chr6.4:58386690-58386709 | MS.gene49902:intron | 40.0% | |
| ACAACTGGTTATGGTGATAC+TGG | - | chr6.4:58386603-58386622 | MS.gene49902:intron | 40.0% | |
| ATATCTAATGCAGGTGGTGT+AGG | - | chr6.4:58386426-58386445 | MS.gene49902:intron | 40.0% | |
| CAACACCTTGGTGAGAAAAA+AGG | - | chr6.4:58387020-58387039 | MS.gene49902:CDS | 40.0% | |
| CAACTCCATGATGTTGTTGA+TGG | + | chr6.4:58385904-58385923 | None:intergenic | 40.0% | |
| CAATATGGCAATCCCATTAG+TGG | - | chr6.4:58385845-58385864 | MS.gene49902:CDS | 40.0% | |
| CATATTGATCAACTTGGCCT+TGG | + | chr6.4:58385832-58385851 | None:intergenic | 40.0% | |
| GAACTGGACATGATAACAGA+GGG | - | chr6.4:58386517-58386536 | MS.gene49902:intron | 40.0% | |
| TATGGAAAAGAGGGTCATCA+TGG | - | chr6.4:58386987-58387006 | MS.gene49902:CDS | 40.0% | |
| TGGAGAAAATAGAGGAGTTG+TGG | - | chr6.4:58386665-58386684 | MS.gene49902:intron | 40.0% | |
| ! | GGACAAGAGTATGGAAAAGA+GGG | - | chr6.4:58386978-58386997 | MS.gene49902:CDS | 40.0% |
| ! | TGGACAAGAGTATGGAAAAG+AGG | - | chr6.4:58386977-58386996 | MS.gene49902:CDS | 40.0% |
| !! | ACTGGTAGGGTTGATGAATA+TGG | - | chr6.4:58385794-58385813 | MS.gene49902:CDS | 40.0% |
| !! | CAAGGCCAAGTTGATCAATA+TGG | - | chr6.4:58385830-58385849 | MS.gene49902:CDS | 40.0% |
| !! | GGTACTGATATTGATGGAAC+CGG | - | chr6.4:58386459-58386478 | MS.gene49902:intron | 40.0% |
| !! | TTTTGAGTCTGACTGAAGCA+TGG | - | chr6.4:58386068-58386087 | MS.gene49902:CDS | 40.0% |
| AAGGAGAAAATTCCTGGCAC+TGG | - | chr6.4:58386555-58386574 | MS.gene49902:intron | 45.0% | |
| AAGGAGAAGATTCCTGGTAC+TGG | - | chr6.4:58386837-58386856 | MS.gene49902:intron | 45.0% | |
| AAGGTGGTGATCAAACTGGT+AGG | - | chr6.4:58385780-58385799 | MS.gene49902:CDS | 45.0% | |
| ACATGATAACAGAGGGGTAG+TGG | - | chr6.4:58386524-58386543 | MS.gene49902:intron | 45.0% | |
| ACTGGATCATGTACTGGACA+TGG | - | chr6.4:58387077-58387096 | MS.gene49902:CDS | 45.0% | |
| AGGAGTTGTGGACAAGATCA+AGG | - | chr6.4:58386677-58386696 | MS.gene49902:intron | 45.0% | |
| AGGTGGTGATCAAACTGGTA+GGG | - | chr6.4:58385781-58385800 | MS.gene49902:CDS | 45.0% | |
| ATGGAGTTGACACAGGTGTT+GGG | - | chr6.4:58385915-58385934 | MS.gene49902:CDS | 45.0% | |
| CAACAAGGTGGTGATCAAAC+TGG | - | chr6.4:58385776-58385795 | MS.gene49902:CDS | 45.0% | |
| CAACATCATGGAGTTGACAC+AGG | - | chr6.4:58385908-58385927 | MS.gene49902:CDS | 45.0% | |
| CATGGACATGGAACAACTAC+TGG | - | chr6.4:58386942-58386961 | MS.gene49902:CDS | 45.0% | |
| GGAACTGGACATGATAACAG+AGG | - | chr6.4:58386516-58386535 | MS.gene49902:intron | 45.0% | |
| GGACACCATCAACAACATCA+TGG | - | chr6.4:58385896-58385915 | MS.gene49902:CDS | 45.0% | |
| GGTTATGGTGATACTGGTGT+TGG | - | chr6.4:58386609-58386628 | MS.gene49902:intron | 45.0% | |
| TATGGCAATCCCATTAGTGG+TGG | - | chr6.4:58385848-58385867 | MS.gene49902:CDS | 45.0% | |
| TGGAGATAATAGAGGAGCTG+CGG | - | chr6.4:58386806-58386825 | MS.gene49902:intron | 45.0% | |
| ! | AAAATTCCTGGCACTGGAAC+TGG | - | chr6.4:58386561-58386580 | MS.gene49902:intron | 45.0% |
| ! | CATGGAACAACTACTGGCTA+TGG | - | chr6.4:58386948-58386967 | MS.gene49902:CDS | 45.0% |
| !! | ACAGGTACTGGTACAGGATA+TGG | - | chr6.4:58385944-58385963 | MS.gene49902:CDS | 45.0% |
| !! | AGGGGTAGTGGACAACATTA+AGG | - | chr6.4:58386536-58386555 | MS.gene49902:intron | 45.0% |
| !! | GGTGTTGGTCATCAACAACA+TGG | - | chr6.4:58386645-58386664 | MS.gene49902:intron | 45.0% |
| AAGGAGAAGATTCCTGGCAC+TGG | - | chr6.4:58386696-58386715 | MS.gene49902:intron | 50.0% | |
| ACAGGAACAGGAACTGGAAC+TGG | - | chr6.4:58386876-58386895 | MS.gene49902:intron | 50.0% | |
| ACAGGAACTGGAACTGGAAC+TGG | - | chr6.4:58386882-58386901 | MS.gene49902:CDS | 50.0% | |
| ACAGGAACTGGAACTGGACA+TGG | - | chr6.4:58386924-58386943 | MS.gene49902:CDS | 50.0% | |
| ACAGGATATGGAACACACGC+TGG | - | chr6.4:58385956-58385975 | MS.gene49902:CDS | 50.0% | |
| ACTGGAACTGGAACTGGAAC+AGG | - | chr6.4:58386573-58386592 | MS.gene49902:intron | 50.0% | |
| ACTGGAACTGGAACTGGAAC+TGG | - | chr6.4:58386573-58386592 | MS.gene49902:intron | 50.0% | |
| ACTGGAACTGGAACTGGACA+TGG | - | chr6.4:58386894-58386913 | MS.gene49902:CDS | 50.0% | |
| ACTGGAACTGGACATGGACA+TGG | - | chr6.4:58386930-58386949 | MS.gene49902:CDS | 50.0% | |
| AGCTCCATAGCCGGTTGTTT+CGG | + | chr6.4:58386487-58386506 | None:intergenic | 50.0% | |
| AGGAGCTGCGGACAAGATTA+AGG | - | chr6.4:58386818-58386837 | MS.gene49902:intron | 50.0% | |
| AGTCATCCCACCACCACTAA+TGG | + | chr6.4:58385861-58385880 | None:intergenic | 50.0% | |
| ATGGAACACACGCTGGTAGT+GGG | - | chr6.4:58385963-58385982 | MS.gene49902:CDS | 50.0% | |
| CATGGAGTTGACACAGGTGT+TGG | - | chr6.4:58385914-58385933 | MS.gene49902:CDS | 50.0% | |
| CCAGTACATGATCCAGTACC+AGG | + | chr6.4:58387074-58387093 | None:intergenic | 50.0% | |
| CTGGAACTGGAACTGGACAT+GGG | - | chr6.4:58386895-58386914 | MS.gene49902:CDS | 50.0% | |
| GCAATCCCATTAGTGGTGGT+GGG | - | chr6.4:58385852-58385871 | MS.gene49902:CDS | 50.0% | |
| GGACATGATGAGCAACACCT+TGG | - | chr6.4:58387008-58387027 | MS.gene49902:CDS | 50.0% | |
| GGTCAAGGAACAACTGGTGT+TGG | - | chr6.4:58386630-58386649 | MS.gene49902:intron | 50.0% | |
| GGTCGTGGAACAACTGGTTA+TGG | - | chr6.4:58386594-58386613 | MS.gene49902:intron | 50.0% | |
| GTCATCCCACCACCACTAAT+GGG | + | chr6.4:58385860-58385879 | None:intergenic | 50.0% | |
| TATGGAAACCCCTTGAGCCA+AGG | - | chr6.4:58385812-58385831 | MS.gene49902:CDS | 50.0% | |
| TATGGAACACACGCTGGTAG+TGG | - | chr6.4:58385962-58385981 | MS.gene49902:CDS | 50.0% | |
| TATGGGACAGGAACAGGAAC+TGG | - | chr6.4:58386870-58386889 | MS.gene49902:intron | 50.0% | |
| TCTAATGCAGGTGGTGTAGG+TGG | - | chr6.4:58386429-58386448 | MS.gene49902:intron | 50.0% | |
| ! | AAGATTCCTGGCACTGGAAC+TGG | - | chr6.4:58386702-58386721 | MS.gene49902:intron | 50.0% |
| ! | ACTACTGGCTATGGAAGCAC+TGG | - | chr6.4:58386957-58386976 | MS.gene49902:CDS | 50.0% |
| ! | ATAGCCGGTTGTTTCGGTTC+CGG | + | chr6.4:58386481-58386500 | None:intergenic | 50.0% |
| ! | CCTGGTACTGGATCATGTAC+TGG | - | chr6.4:58387071-58387090 | MS.gene49902:CDS | 50.0% |
| !! | AGCAACACAGGTACTGGTAC+AGG | - | chr6.4:58385938-58385957 | MS.gene49902:CDS | 50.0% |
| !! | ATCAACTTGGCCTTGGCTCA+AGG | + | chr6.4:58385825-58385844 | None:intergenic | 50.0% |
| !! | ATGACTGGTGCTACTGGTCA+TGG | - | chr6.4:58385875-58385894 | MS.gene49902:CDS | 50.0% |
| !! | ATTAGTGGTGGTGGGATGAC+TGG | - | chr6.4:58385860-58385879 | MS.gene49902:CDS | 50.0% |
| !! | GGAAGCACTGGACAAGAGTA+TGG | - | chr6.4:58386969-58386988 | MS.gene49902:CDS | 50.0% |
| !! | GGTGATACTGGTGTTGGTCA+AGG | - | chr6.4:58386615-58386634 | MS.gene49902:intron | 50.0% |
| !! | GGTGTTGGTCAAGGAACAAC+TGG | - | chr6.4:58386624-58386643 | MS.gene49902:intron | 50.0% |
| !! | TCAACTTGGCCTTGGCTCAA+GGG | + | chr6.4:58385824-58385843 | None:intergenic | 50.0% |
| ACAACCGGCTATGGAGCTAC+AGG | - | chr6.4:58386489-58386508 | MS.gene49902:intron | 55.0% | |
| ACTGGAACTGGAACAGGTCG+TGG | - | chr6.4:58386579-58386598 | MS.gene49902:intron | 55.0% | |
| ACTGGAACTGGACATGGGAC+AGG | - | chr6.4:58386900-58386919 | MS.gene49902:CDS | 55.0% | |
| ACTGGACATGGGACAGGAAC+AGG | - | chr6.4:58386906-58386925 | MS.gene49902:CDS | 55.0% | |
| CATGGGACAGGAACAGGAAC+TGG | - | chr6.4:58386912-58386931 | MS.gene49902:CDS | 55.0% | |
| GCAGGTGGTGTAGGTGGTTA+TGG | - | chr6.4:58386435-58386454 | MS.gene49902:intron | 55.0% | |
| GGAACAGGTCGTGGAACAAC+TGG | - | chr6.4:58386588-58386607 | MS.gene49902:intron | 55.0% | |
| GGAACCGAAACAACCGGCTA+TGG | - | chr6.4:58386480-58386499 | MS.gene49902:intron | 55.0% | |
| GGAACCGGAACCGAAACAAC+CGG | - | chr6.4:58386474-58386493 | MS.gene49902:intron | 55.0% | |
| GGCAATCCCATTAGTGGTGG+TGG | - | chr6.4:58385851-58385870 | MS.gene49902:CDS | 55.0% | |
| GGTGGTGTAGGTGGTTATGG+AGG | - | chr6.4:58386438-58386457 | MS.gene49902:intron | 55.0% | |
| GTTGGGAGCAACACAGGTAC+TGG | - | chr6.4:58385932-58385951 | MS.gene49902:CDS | 55.0% | |
| ! | TGGAACACACGCTGGTAGTG+GGG | - | chr6.4:58385964-58385983 | MS.gene49902:CDS | 55.0% |
| !! | ACAGGTGTTGGGAGCAACAC+AGG | - | chr6.4:58385926-58385945 | MS.gene49902:CDS | 55.0% |
| !! | CAACTTGGCCTTGGCTCAAG+GGG | + | chr6.4:58385823-58385842 | None:intergenic | 55.0% |
| ACCGGCTATGGAGCTACAGG+TGG | - | chr6.4:58386492-58386511 | MS.gene49902:intron | 60.0% | |
| CCAGTTCCAGTTCCAGTGCC+AGG | + | chr6.4:58386570-58386589 | None:intergenic | 60.0% | |
| GCCACCTGTAGCTCCATAGC+CGG | + | chr6.4:58386496-58386515 | None:intergenic | 60.0% | |
| GGCTATGGAGCTACAGGTGG+CGG | - | chr6.4:58386495-58386514 | MS.gene49902:intron | 60.0% | |
| ! | CCTGGCACTGGAACTGGAAC+TGG | - | chr6.4:58386567-58386586 | MS.gene49902:intron | 60.0% |
| !! | AACACACGCTGGTAGTGGGG+GGG | - | chr6.4:58385967-58385986 | MS.gene49902:CDS | 60.0% |
| !! | GAACACACGCTGGTAGTGGG+GGG | - | chr6.4:58385966-58385985 | MS.gene49902:CDS | 60.0% |
| !! | GGAACACACGCTGGTAGTGG+GGG | - | chr6.4:58385965-58385984 | MS.gene49902:CDS | 60.0% |
| !! | GGTGGGATGACTGGTGCTAC+TGG | - | chr6.4:58385869-58385888 | MS.gene49902:CDS | 60.0% |
| !! | GGAGCTACAGGTGGCGGAAC+TGG | - | chr6.4:58386501-58386520 | MS.gene49902:intron | 65.0% |
| !! | GGTAGTGGGGGGGCTCCCAC+AGG | - | chr6.4:58385977-58385996 | MS.gene49902:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 58385764 | 58387115 | 58385764 | ID=MS.gene49902 |
| chr6.4 | mRNA | 58385764 | 58387115 | 58385764 | ID=MS.gene49902.t1;Parent=MS.gene49902 |
| chr6.4 | exon | 58386881 | 58387115 | 58386881 | ID=MS.gene49902.t1.exon1;Parent=MS.gene49902.t1 |
| chr6.4 | CDS | 58386881 | 58387115 | 58386881 | ID=cds.MS.gene49902.t1;Parent=MS.gene49902.t1 |
| chr6.4 | exon | 58385764 | 58386440 | 58385764 | ID=MS.gene49902.t1.exon2;Parent=MS.gene49902.t1 |
| chr6.4 | CDS | 58385764 | 58386440 | 58385764 | ID=cds.MS.gene49902.t1;Parent=MS.gene49902.t1 |
| Gene Sequence |
| Protein sequence |
