AlfalfaGEDB | MS.gene05474

M. sativa cultivar XinJiangDaYe / MS.gene05474

KEGG: -
GO: GO:0001101 GO:0008150 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700
PFAM: PF00257.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05474.t1	AEV52288.1	95.5	309	10	2	1	309	1	305	7.30E-30	141.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05474.t1	P28641	87.5	32	2	2	273	304	203	232	2.5e-07	57.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05474.t1	G9FYZ4	95.5	309	10	2	1	309	1	305	5.2e-30	141.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05474	MS.gene058490	0.856013	4.28E-62	-1.69E-46
MS.gene05474	MS.gene059776	0.807829	4.18E-50	-1.69E-46
MS.gene05474	MS.gene46301	0.845132	4.91E-59	-1.69E-46
MS.gene05474	MS.gene49902	0.883345	4.85E-71	-1.69E-46
MS.gene05474	MS.gene58353	0.810811	9.57E-51	-1.69E-46
MS.gene05474	MS.gene58355	0.808205	3.47E-50	-1.69E-46
MS.gene05474	MS.gene67045	0.823791	1.14E-53	-1.69E-46
MS.gene05474	MS.gene71246	0.821008	5.07E-53	-1.69E-46
MS.gene05474	MS.gene71278	0.806581	7.67E-50	-1.69E-46
MS.gene05474	MS.gene71279	0.807499	4.91E-50	-1.69E-46
MS.gene05474	MS.gene71882	0.813331	2.70E-51	-1.69E-46
MS.gene05474	MS.gene98856	0.9576	1.83E-115	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05474.t1	MTR_6g084640	55.602	241	70	5	74	306	99	310	4.50e-34	127
MS.gene05474.t1	MTR_6g084640	44.134	179	45	4	112	245	144	312	1.82e-18	84.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 130 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTACTGAACAAAATATTTA+TGG	0.176291	6.2:-83359245	MS.gene05474:CDS
AGGGATTATGGAAAAGATTA+AGG	0.301097	6.2:-83359063	MS.gene05474:CDS
AAAATTCCTGGCACTGGAAC+TGG	0.317217	6.2:-83359548	MS.gene05474:CDS
ACTGGTAGGGTTGATGAATA+TGG	0.317246	6.2:-83360102	MS.gene05474:CDS
AGGAGCTGCGGACAAGATTA+AGG	0.318692	6.2:-83359279	MS.gene05474:CDS
AAGATTCCTGGCACTGGAAC+TGG	0.323822	6.2:-83359401	MS.gene05474:CDS
CCTGGCACTGGAACTGGAAC+TGG	0.334665	6.2:-83359395	MS.gene05474:CDS
CCTGGCACTGGAACTGGAAC+TGG	0.334665	6.2:-83359542	MS.gene05474:CDS
AGTCATCCCACCACCACTAA+TGG	0.343093	6.2:+83360038	None:intergenic
AGGGGTAGTGGACAAGATTA+AGG	0.345858	6.2:-83359573	MS.gene05474:CDS
TCTAATGCAGGTGGTGGTTA+TGG	0.353755	6.2:-83359692	MS.gene05474:intron
AGCTCCATAGCCGGTTGTTC+CGG	0.355691	6.2:+83359625	None:intergenic
GGAGCTACAGGTGGCGGAAC+TGG	0.372221	6.2:-83359608	MS.gene05474:CDS
ACAGGTACTGGTACAGGATA+TGG	0.372996	6.2:-83359952	MS.gene05474:CDS
AAGATTAAGGAGAAAATTCC+TGG	0.378788	6.2:-83359560	MS.gene05474:CDS
ACAGGAACTGGAACTGGAAC+TGG	0.381261	6.2:-83359215	MS.gene05474:CDS
ACTGGACATGGGACAGGAAC+TGG	0.382886	6.2:-83359191	MS.gene05474:CDS
ACTGGAACTGGAACTGGAAC+TGG	0.383890	6.2:-83359209	MS.gene05474:CDS
GTACTGAACAAAATATTTAT+GGG	0.388760	6.2:-83359244	MS.gene05474:CDS
GGAAGCACTGGACAAGAGTA+TGG	0.391237	6.2:-83359134	MS.gene05474:CDS
AATATTTATGGGACAGGAAC+AGG	0.392831	6.2:-83359233	MS.gene05474:CDS
ACTGGAACTGGAACTGGAAC+TGG	0.407435	6.2:-83359389	MS.gene05474:CDS
ACTGGAACTGGAACTGGAAC+TGG	0.407435	6.2:-83359536	MS.gene05474:CDS
ACTGGAACTGGAACTGGAAC+AGG	0.408098	6.2:-83359383	MS.gene05474:CDS
ACTGGAACTGGAACTGGAAC+AGG	0.408098	6.2:-83359530	MS.gene05474:CDS
CAAGGCCAAGTTGATCAATA+TGG	0.416063	6.2:-83360066	MS.gene05474:CDS
CATATTGATCAACTTGGCCT+TGG	0.419277	6.2:+83360067	None:intergenic
AAGATCAAGGAGAAGATTCC+TGG	0.420374	6.2:-83359413	MS.gene05474:CDS
TATGGTACAGGGACAGGAAC+CGG	0.420603	6.2:-83359644	MS.gene05474:CDS
GGTGGGATGACTGGTGCTAC+TGG	0.426647	6.2:-83360027	MS.gene05474:CDS
TATGGGACAGGAACAGGAAC+TGG	0.427579	6.2:-83359227	MS.gene05474:CDS
GGTAATGATATTGATGGAAC+CGG	0.427999	6.2:-83359668	MS.gene05474:CDS
CAACTCCATGATGTTGTTGA+TGG	0.429936	6.2:+83359995	None:intergenic
ATCAACTTGGCCTTGGCTCA+AGG	0.433377	6.2:+83360074	None:intergenic
GGCAATCCCATTAGTGGTGG+TGG	0.433710	6.2:-83360045	MS.gene05474:CDS
ACAGGAACAGGAACTGGAAC+TGG	0.440479	6.2:-83359221	MS.gene05474:CDS
CATGGGACAGGAACTGGAAC+TGG	0.443624	6.2:-83359185	MS.gene05474:CDS
GTCATCCCACCACCACTAAT+GGG	0.445577	6.2:+83360039	None:intergenic
AAGATTAAGGAGAAGATTCC+TGG	0.445930	6.2:-83359050	MS.gene05474:CDS
GGAACAGGTCGTGGAACAAC+TGG	0.455989	6.2:-83359368	MS.gene05474:CDS
GGAACAGGTCGTGGAACAAC+TGG	0.455989	6.2:-83359515	MS.gene05474:CDS
TCAACTTGGCCTTGGCTCAA+GGG	0.457612	6.2:+83360075	None:intergenic
CAACTTGGCCTTGGCTCAAG+GGG	0.457999	6.2:+83360076	None:intergenic
GATATTGATGGAACCGGGTA+TGG	0.458419	6.2:-83359662	MS.gene05474:CDS
GGGACAGGAACCGGAACAAC+CGG	0.462844	6.2:-83359635	MS.gene05474:CDS
ACAACTGGTTATGGTGATAC+TGG	0.463302	6.2:-83359353	MS.gene05474:CDS
ACAACTGGTTATGGTGATAC+TGG	0.463302	6.2:-83359500	MS.gene05474:CDS
ATTAGTGGTGGTGGGATGAC+TGG	0.468498	6.2:-83360036	MS.gene05474:CDS
AAGATTAAGGAGAAGATTCC+TGG	0.468840	6.2:-83359266	MS.gene05474:CDS
AAGGAGAAGATTCCTGGTAC+TGG	0.469022	6.2:-83359044	MS.gene05474:CDS
TATGGAACACACGCTGGTAG+TGG	0.469062	6.2:-83359934	MS.gene05474:CDS
ACTGGAACTGGAACTGGACA+TGG	0.475800	6.2:-83359203	MS.gene05474:CDS
GATGGAACCGGGTATGGTAC+AGG	0.478285	6.2:-83359656	MS.gene05474:CDS
ACCGGGTATGGTACAGGGAC+AGG	0.478921	6.2:-83359650	MS.gene05474:CDS
CCAGTTCCAGTTCCAGTGCC+AGG	0.482887	6.2:+83359395	None:intergenic
CCAGTTCCAGTTCCAGTGCC+AGG	0.482887	6.2:+83359542	None:intergenic
CAACAAGGTGGTGATCAAAC+TGG	0.483657	6.2:-83360120	MS.gene05474:CDS
ATGGAACACACGCTGGTAGT+GGG	0.484220	6.2:-83359933	MS.gene05474:CDS
ATGGAGTTGACACAGGTGTT+GGG	0.485196	6.2:-83359981	MS.gene05474:CDS
CATGGACATGGAACAACTAC+TGG	0.485597	6.2:-83359161	MS.gene05474:CDS
AAGGAGAAAATTCCTGGCAC+TGG	0.489221	6.2:-83359554	MS.gene05474:CDS
ACTGGAACTGGAACAGGTCG+TGG	0.491588	6.2:-83359377	MS.gene05474:CDS
ACTGGAACTGGAACAGGTCG+TGG	0.491588	6.2:-83359524	MS.gene05474:CDS
GGTCGTGGAACAACTGGTTA+TGG	0.505394	6.2:-83359362	MS.gene05474:CDS
GGTCGTGGAACAACTGGTTA+TGG	0.505394	6.2:-83359509	MS.gene05474:CDS
CCAGTACATGATCCAGTACC+AGG	0.505527	6.2:+83359032	None:intergenic
TCCTGTCCCTGTACCATACC+CGG	0.506624	6.2:+83359649	None:intergenic
ATGACTGGTGCTACTGGTCA+TGG	0.507846	6.2:-83360021	MS.gene05474:CDS
GGAACCGGAACAACCGGCTA+TGG	0.510275	6.2:-83359629	MS.gene05474:CDS
CATGGAACAACTACTGGCTA+TGG	0.511666	6.2:-83359155	MS.gene05474:CDS
AGGAGTTGTGGACAAGATCA+AGG	0.513775	6.2:-83359426	MS.gene05474:CDS
CATGGAGTTGACACAGGTGT+TGG	0.513839	6.2:-83359982	MS.gene05474:CDS
CAATATGGCAATCCCATTAG+TGG	0.515585	6.2:-83360051	MS.gene05474:CDS
TATGGAGGTAATGATATTGA+TGG	0.516426	6.2:-83359674	MS.gene05474:CDS
CCTGGTACTGGATCATGTAC+TGG	0.516603	6.2:-83359032	MS.gene05474:CDS
ACATGATAACAGAGGGGTAG+TGG	0.519568	6.2:-83359585	MS.gene05474:CDS
GGTGTTGGTCAAGGAACAAC+TGG	0.521239	6.2:-83359332	MS.gene05474:CDS
GGTGTTGGTCAAGGAACAAC+TGG	0.521239	6.2:-83359479	MS.gene05474:CDS
AAGGAGAAGATTCCTGGCAC+TGG	0.522026	6.2:-83359407	MS.gene05474:CDS
ACTGGAACTGGACATGGGAC+AGG	0.527658	6.2:-83359197	MS.gene05474:CDS
GTTGGGAGCAACACAGGTAC+TGG	0.531031	6.2:-83359964	MS.gene05474:CDS
ACAGGAACTGGAACTGGACA+TGG	0.531045	6.2:-83359179	MS.gene05474:CDS
CAACAACATGGAGAAAATAG+AGG	0.532385	6.2:-83359446	MS.gene05474:CDS
TATGGAAAAGAGGGTCATCA+TGG	0.533254	6.2:-83359116	MS.gene05474:CDS
ACTACTGGCTATGGAAGCAC+TGG	0.536598	6.2:-83359146	MS.gene05474:CDS
AGCAACACAGGTACTGGTAC+AGG	0.538724	6.2:-83359958	MS.gene05474:CDS
GAACAAAATATTTATGGGAC+AGG	0.539035	6.2:-83359239	MS.gene05474:CDS
TGGAACACACGCTGGTAGTG+GGG	0.539678	6.2:-83359932	MS.gene05474:CDS
GATTGCCATATTGATCAACT+TGG	0.539982	6.2:+83360061	None:intergenic
GCCACCTGTAGCTCCATAGC+CGG	0.542385	6.2:+83359616	None:intergenic
GGCTATGGAGCTACAGGTGG+CGG	0.544468	6.2:-83359614	MS.gene05474:CDS
TGGACAAGAGTATGGAAAAG+AGG	0.546793	6.2:-83359126	MS.gene05474:CDS
GGAACACACGCTGGTAGTGG+GGG	0.547642	6.2:-83359931	MS.gene05474:CDS
CAACAACATGGAGATAATAG+AGG	0.547854	6.2:-83359299	MS.gene05474:CDS
TGGAGAAAATAGAGGAGTTG+TGG	0.548338	6.2:-83359438	MS.gene05474:CDS
ACAACCGGCTATGGAGCTAC+AGG	0.564829	6.2:-83359620	MS.gene05474:CDS
GAACACACGCTGGTAGTGGG+GGG	0.566026	6.2:-83359930	MS.gene05474:CDS
ACAGGTGTTGGGAGCAACAC+AGG	0.578588	6.2:-83359970	MS.gene05474:CDS
ACTGGAACTGGACATGGACA+TGG	0.588993	6.2:-83359173	MS.gene05474:CDS
AACACACGCTGGTAGTGGGG+GGG	0.589672	6.2:-83359929	MS.gene05474:CDS
GGACACCATCAACAACATCA+TGG	0.598586	6.2:-83360000	MS.gene05474:CDS
TATGGAAACCCCTTGAGCCA+AGG	0.599812	6.2:-83360084	MS.gene05474:CDS
AAGGTGGTGATCAAACTGGT+AGG	0.600281	6.2:-83360116	MS.gene05474:CDS
GGACAAGAGTATGGAAAAGA+GGG	0.606312	6.2:-83359125	MS.gene05474:CDS
CTGGAACTGGAACTGGACAT+GGG	0.610777	6.2:-83359202	MS.gene05474:CDS
GGTGATACTGGTGTTGGTCA+AGG	0.612946	6.2:-83359341	MS.gene05474:CDS
GGTGATACTGGTGTTGGTCA+AGG	0.612946	6.2:-83359488	MS.gene05474:CDS
ATGGAACCGGGTATGGTACA+GGG	0.613026	6.2:-83359655	MS.gene05474:CDS
AATGCAGGTGGTGGTTATGG+AGG	0.617504	6.2:-83359689	MS.gene05474:intron
GGTTATGGTGATACTGGTGT+TGG	0.623712	6.2:-83359347	MS.gene05474:CDS
GGTTATGGTGATACTGGTGT+TGG	0.623712	6.2:-83359494	MS.gene05474:CDS
GAACTGGACATGATAACAGA+GGG	0.628252	6.2:-83359592	MS.gene05474:CDS
AGGTGGTGATCAAACTGGTA+GGG	0.630608	6.2:-83360115	MS.gene05474:CDS
GGTCAAGGAACAACTGGTGT+TGG	0.634078	6.2:-83359326	MS.gene05474:CDS
GGTCAAGGAACAACTGGTGT+TGG	0.634078	6.2:-83359473	MS.gene05474:CDS
GCAATCCCATTAGTGGTGGT+GGG	0.635724	6.2:-83360044	MS.gene05474:CDS
CAACATCATGGAGTTGACAC+AGG	0.644345	6.2:-83359988	MS.gene05474:CDS
TGGAGATAATAGAGGAGCTG+CGG	0.652727	6.2:-83359291	MS.gene05474:CDS
ACTGGATCATGTACTGGACA+TGG	0.658437	6.2:-83359026	MS.gene05474:CDS
TATGGCAATCCCATTAGTGG+TGG	0.666004	6.2:-83360048	MS.gene05474:CDS
GTAATGATATTGATGGAACC+GGG	0.667858	6.2:-83359667	MS.gene05474:CDS
ACCGGCTATGGAGCTACAGG+TGG	0.667930	6.2:-83359617	MS.gene05474:CDS
GGACATGATGAGCAACACCT+TGG	0.668375	6.2:-83359095	MS.gene05474:CDS
GGTGTTGGTCATCAACAACA+TGG	0.679464	6.2:-83359311	MS.gene05474:CDS
GGTGTTGGTCATCAACAACA+TGG	0.679464	6.2:-83359458	MS.gene05474:CDS
ACAGGATATGGAACACACGC+TGG	0.687164	6.2:-83359940	MS.gene05474:CDS
GGAACTGGACATGATAACAG+AGG	0.719077	6.2:-83359593	MS.gene05474:CDS
ACAATGTCTCAATATCAACA+AGG	0.721195	6.2:-83360135	MS.gene05474:CDS
ATGTCTCAATATCAACAAGG+TGG	0.725256	6.2:-83360132	MS.gene05474:CDS
AACTGGACATGATAACAGAG+GGG	0.772871	6.2:-83359591	MS.gene05474:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCAAATTCAAATGATTAT+CGG	-	chr6.2:83359358-83359377	MS.gene05474:CDS	15.0%
!!	GTACTGAACAAAATATTTAT+GGG	-	chr6.2:83359898-83359917	MS.gene05474:intron	20.0%
!	CTAACATTTATATCTAATGC+AGG	-	chr6.2:83359438-83359457	MS.gene05474:CDS	25.0%
!!	GGTACTGAACAAAATATTTA+TGG	-	chr6.2:83359897-83359916	MS.gene05474:intron	25.0%
!!	TAAATATTTTGTTCAGTACC+AGG	+	chr6.2:83359897-83359916	None:intergenic	25.0%
	AAGATTAAGGAGAAAATTCC+TGG	-	chr6.2:83359582-83359601	MS.gene05474:CDS	30.0%
	ACATTTATATCTAATGCAGG+TGG	-	chr6.2:83359441-83359460	MS.gene05474:CDS	30.0%
	AGGGATTATGGAAAAGATTA+AGG	-	chr6.2:83360079-83360098	MS.gene05474:CDS	30.0%
	GAACAAAATATTTATGGGAC+AGG	-	chr6.2:83359903-83359922	MS.gene05474:intron	30.0%
	TAGACTAATTAGTTACCTGT+GGG	+	chr6.2:83359241-83359260	None:intergenic	30.0%
	TATGGAGGTAATGATATTGA+TGG	-	chr6.2:83359468-83359487	MS.gene05474:CDS	30.0%
	TTAGACTAATTAGTTACCTG+TGG	+	chr6.2:83359242-83359261	None:intergenic	30.0%
	AACACCTTGGTGAGAAAAAA+GGG	-	chr6.2:83360060-83360079	MS.gene05474:CDS	35.0%
	AAGATTAAGGAGAAGATTCC+TGG	-	chr6.2:83359876-83359895	MS.gene05474:intron	35.0%
	AATATTTATGGGACAGGAAC+AGG	-	chr6.2:83359909-83359928	MS.gene05474:intron	35.0%
	ATGTCTCAATATCAACAAGG+TGG	-	chr6.2:83359010-83359029	MS.gene05474:CDS	35.0%
	CAACAACATGGAGAAAATAG+AGG	-	chr6.2:83359696-83359715	MS.gene05474:intron	35.0%
	CAACAACATGGAGATAATAG+AGG	-	chr6.2:83359843-83359862	MS.gene05474:intron	35.0%
	GATTGCCATATTGATCAACT+TGG	+	chr6.2:83359084-83359103	None:intergenic	35.0%
	GGTAATGATATTGATGGAAC+CGG	-	chr6.2:83359474-83359493	MS.gene05474:CDS	35.0%
	GTAATGATATTGATGGAACC+GGG	-	chr6.2:83359475-83359494	MS.gene05474:CDS	35.0%
	TGGTGAGAAAAAAGGGATTA+TGG	-	chr6.2:83360067-83360086	MS.gene05474:CDS	35.0%
	TTTATATCTAATGCAGGTGG+TGG	-	chr6.2:83359444-83359463	MS.gene05474:CDS	35.0%
!!!	TAATCCCTTTTTTCTCACCA+AGG	+	chr6.2:83360067-83360086	None:intergenic	35.0%
	AACTGGACATGATAACAGAG+GGG	-	chr6.2:83359551-83359570	MS.gene05474:CDS	40.0%
	AAGATCAAGGAGAAGATTCC+TGG	-	chr6.2:83359729-83359748	MS.gene05474:intron	40.0%
	ACAACTGGTTATGGTGATAC+TGG	-	chr6.2:83359642-83359661	MS.gene05474:CDS	40.0%
	CAACACCTTGGTGAGAAAAA+AGG	-	chr6.2:83360059-83360078	MS.gene05474:CDS	40.0%
	CAACTCCATGATGTTGTTGA+TGG	+	chr6.2:83359150-83359169	None:intergenic	40.0%
	CAATATGGCAATCCCATTAG+TGG	-	chr6.2:83359091-83359110	MS.gene05474:CDS	40.0%
	CATATTGATCAACTTGGCCT+TGG	+	chr6.2:83359078-83359097	None:intergenic	40.0%
	GAACTGGACATGATAACAGA+GGG	-	chr6.2:83359550-83359569	MS.gene05474:CDS	40.0%
	TATGGAAAAGAGGGTCATCA+TGG	-	chr6.2:83360026-83360045	MS.gene05474:CDS	40.0%
	TGGAGAAAATAGAGGAGTTG+TGG	-	chr6.2:83359704-83359723	MS.gene05474:intron	40.0%
!	GGACAAGAGTATGGAAAAGA+GGG	-	chr6.2:83360017-83360036	MS.gene05474:CDS	40.0%
!	TGGACAAGAGTATGGAAAAG+AGG	-	chr6.2:83360016-83360035	MS.gene05474:CDS	40.0%
!	TTTTGTGTCTGACTGAAGCA+TGG	-	chr6.2:83359314-83359333	MS.gene05474:CDS	40.0%
!!	ACTGGTAGGGTTGATGAATA+TGG	-	chr6.2:83359040-83359059	MS.gene05474:CDS	40.0%
!!	CAAGGCCAAGTTGATCAATA+TGG	-	chr6.2:83359076-83359095	MS.gene05474:CDS	40.0%
	AAGGAGAAAATTCCTGGCAC+TGG	-	chr6.2:83359588-83359607	MS.gene05474:CDS	45.0%
	AAGGAGAAGATTCCTGGTAC+TGG	-	chr6.2:83359882-83359901	MS.gene05474:intron	45.0%
	AAGGTGGTGATCAAACTGGT+AGG	-	chr6.2:83359026-83359045	MS.gene05474:CDS	45.0%
	ACATGATAACAGAGGGGTAG+TGG	-	chr6.2:83359557-83359576	MS.gene05474:CDS	45.0%
	ACTGGATCATGTACTGGACA+TGG	-	chr6.2:83360116-83360135	MS.gene05474:CDS	45.0%
	AGGAGTTGTGGACAAGATCA+AGG	-	chr6.2:83359716-83359735	MS.gene05474:intron	45.0%
	AGGTGGTGATCAAACTGGTA+GGG	-	chr6.2:83359027-83359046	MS.gene05474:CDS	45.0%
	ATGGAGTTGACACAGGTGTT+GGG	-	chr6.2:83359161-83359180	MS.gene05474:CDS	45.0%
	CAACAAGGTGGTGATCAAAC+TGG	-	chr6.2:83359022-83359041	MS.gene05474:CDS	45.0%
	CAACATCATGGAGTTGACAC+AGG	-	chr6.2:83359154-83359173	MS.gene05474:CDS	45.0%
	CATGGACATGGAACAACTAC+TGG	-	chr6.2:83359981-83360000	MS.gene05474:CDS	45.0%
	GATATTGATGGAACCGGGTA+TGG	-	chr6.2:83359480-83359499	MS.gene05474:CDS	45.0%
	GGAACTGGACATGATAACAG+AGG	-	chr6.2:83359549-83359568	MS.gene05474:CDS	45.0%
	GGACACCATCAACAACATCA+TGG	-	chr6.2:83359142-83359161	MS.gene05474:CDS	45.0%
	GGTTATGGTGATACTGGTGT+TGG	-	chr6.2:83359648-83359667	MS.gene05474:CDS	45.0%
	TATGGCAATCCCATTAGTGG+TGG	-	chr6.2:83359094-83359113	MS.gene05474:CDS	45.0%
	TGGAGATAATAGAGGAGCTG+CGG	-	chr6.2:83359851-83359870	MS.gene05474:intron	45.0%
!	AAAATTCCTGGCACTGGAAC+TGG	-	chr6.2:83359594-83359613	MS.gene05474:CDS	45.0%
!	CATGGAACAACTACTGGCTA+TGG	-	chr6.2:83359987-83360006	MS.gene05474:CDS	45.0%
!	TCTAATGCAGGTGGTGGTTA+TGG	-	chr6.2:83359450-83359469	MS.gene05474:CDS	45.0%
!!	ACAGGTACTGGTACAGGATA+TGG	-	chr6.2:83359190-83359209	MS.gene05474:CDS	45.0%
!!	AGGGGTAGTGGACAAGATTA+AGG	-	chr6.2:83359569-83359588	MS.gene05474:CDS	45.0%
!!	GGTGTTGGTCATCAACAACA+TGG	-	chr6.2:83359684-83359703	MS.gene05474:CDS	45.0%
	AAGGAGAAGATTCCTGGCAC+TGG	-	chr6.2:83359735-83359754	MS.gene05474:intron	50.0%
	ACAGGAACAGGAACTGGAAC+TGG	-	chr6.2:83359921-83359940	MS.gene05474:CDS	50.0%
	ACAGGAACTGGAACTGGAAC+TGG	-	chr6.2:83359927-83359946	MS.gene05474:CDS	50.0%
	ACAGGAACTGGAACTGGACA+TGG	-	chr6.2:83359963-83359982	MS.gene05474:CDS	50.0%
	ACAGGATATGGAACACACGC+TGG	-	chr6.2:83359202-83359221	MS.gene05474:CDS	50.0%
	ACTGGAACTGGAACTGGAAC+AGG	-	chr6.2:83359606-83359625	MS.gene05474:CDS	50.0%
	ACTGGAACTGGAACTGGAAC+TGG	-	chr6.2:83359606-83359625	MS.gene05474:CDS	50.0%
	ACTGGAACTGGAACTGGACA+TGG	-	chr6.2:83359939-83359958	MS.gene05474:CDS	50.0%
	ACTGGAACTGGACATGGACA+TGG	-	chr6.2:83359969-83359988	MS.gene05474:CDS	50.0%
	AGGAGCTGCGGACAAGATTA+AGG	-	chr6.2:83359863-83359882	MS.gene05474:intron	50.0%
	AGTCATCCCACCACCACTAA+TGG	+	chr6.2:83359107-83359126	None:intergenic	50.0%
	ATGGAACACACGCTGGTAGT+GGG	-	chr6.2:83359209-83359228	MS.gene05474:CDS	50.0%
	ATGGAACCGGGTATGGTACA+GGG	-	chr6.2:83359487-83359506	MS.gene05474:CDS	50.0%
	CATGGAGTTGACACAGGTGT+TGG	-	chr6.2:83359160-83359179	MS.gene05474:CDS	50.0%
	CCAGTACATGATCCAGTACC+AGG	+	chr6.2:83360113-83360132	None:intergenic	50.0%
	CTGGAACTGGAACTGGACAT+GGG	-	chr6.2:83359940-83359959	MS.gene05474:CDS	50.0%
	GCAATCCCATTAGTGGTGGT+GGG	-	chr6.2:83359098-83359117	MS.gene05474:CDS	50.0%
	GGACATGATGAGCAACACCT+TGG	-	chr6.2:83360047-83360066	MS.gene05474:CDS	50.0%
	GGTCAAGGAACAACTGGTGT+TGG	-	chr6.2:83359669-83359688	MS.gene05474:CDS	50.0%
	GGTCGTGGAACAACTGGTTA+TGG	-	chr6.2:83359633-83359652	MS.gene05474:CDS	50.0%
	GTCATCCCACCACCACTAAT+GGG	+	chr6.2:83359106-83359125	None:intergenic	50.0%
	TATGGAAACCCCTTGAGCCA+AGG	-	chr6.2:83359058-83359077	MS.gene05474:CDS	50.0%
	TATGGAACACACGCTGGTAG+TGG	-	chr6.2:83359208-83359227	MS.gene05474:CDS	50.0%
	TATGGGACAGGAACAGGAAC+TGG	-	chr6.2:83359915-83359934	MS.gene05474:intron	50.0%
	TATGGTACAGGGACAGGAAC+CGG	-	chr6.2:83359498-83359517	MS.gene05474:CDS	50.0%
!	AAGATTCCTGGCACTGGAAC+TGG	-	chr6.2:83359741-83359760	MS.gene05474:intron	50.0%
!	AATGCAGGTGGTGGTTATGG+AGG	-	chr6.2:83359453-83359472	MS.gene05474:CDS	50.0%
!	ACTACTGGCTATGGAAGCAC+TGG	-	chr6.2:83359996-83360015	MS.gene05474:CDS	50.0%
!	CCTGGTACTGGATCATGTAC+TGG	-	chr6.2:83360110-83360129	MS.gene05474:CDS	50.0%
!!	AGCAACACAGGTACTGGTAC+AGG	-	chr6.2:83359184-83359203	MS.gene05474:CDS	50.0%
!!	ATCAACTTGGCCTTGGCTCA+AGG	+	chr6.2:83359071-83359090	None:intergenic	50.0%
!!	ATGACTGGTGCTACTGGTCA+TGG	-	chr6.2:83359121-83359140	MS.gene05474:CDS	50.0%
!!	ATTAGTGGTGGTGGGATGAC+TGG	-	chr6.2:83359106-83359125	MS.gene05474:CDS	50.0%
!!	GGAAGCACTGGACAAGAGTA+TGG	-	chr6.2:83360008-83360027	MS.gene05474:CDS	50.0%
!!	GGTGATACTGGTGTTGGTCA+AGG	-	chr6.2:83359654-83359673	MS.gene05474:CDS	50.0%
!!	GGTGTTGGTCAAGGAACAAC+TGG	-	chr6.2:83359663-83359682	MS.gene05474:CDS	50.0%
!!	TCAACTTGGCCTTGGCTCAA+GGG	+	chr6.2:83359070-83359089	None:intergenic	50.0%
	ACAACCGGCTATGGAGCTAC+AGG	-	chr6.2:83359522-83359541	MS.gene05474:CDS	55.0%
	ACTGGAACTGGAACAGGTCG+TGG	-	chr6.2:83359618-83359637	MS.gene05474:CDS	55.0%
	ACTGGAACTGGACATGGGAC+AGG	-	chr6.2:83359945-83359964	MS.gene05474:CDS	55.0%
	ACTGGACATGGGACAGGAAC+TGG	-	chr6.2:83359951-83359970	MS.gene05474:CDS	55.0%
	AGCTCCATAGCCGGTTGTTC+CGG	+	chr6.2:83359520-83359539	None:intergenic	55.0%
	CATGGGACAGGAACTGGAAC+TGG	-	chr6.2:83359957-83359976	MS.gene05474:CDS	55.0%
	GATGGAACCGGGTATGGTAC+AGG	-	chr6.2:83359486-83359505	MS.gene05474:CDS	55.0%
	GGAACAGGTCGTGGAACAAC+TGG	-	chr6.2:83359627-83359646	MS.gene05474:CDS	55.0%
	GGCAATCCCATTAGTGGTGG+TGG	-	chr6.2:83359097-83359116	MS.gene05474:CDS	55.0%
	GTTGGGAGCAACACAGGTAC+TGG	-	chr6.2:83359178-83359197	MS.gene05474:CDS	55.0%
	TCCTGTCCCTGTACCATACC+CGG	+	chr6.2:83359496-83359515	None:intergenic	55.0%
!	TGGAACACACGCTGGTAGTG+GGG	-	chr6.2:83359210-83359229	MS.gene05474:CDS	55.0%
!!	ACAGGTGTTGGGAGCAACAC+AGG	-	chr6.2:83359172-83359191	MS.gene05474:CDS	55.0%
!!	CAACTTGGCCTTGGCTCAAG+GGG	+	chr6.2:83359069-83359088	None:intergenic	55.0%
	ACCGGCTATGGAGCTACAGG+TGG	-	chr6.2:83359525-83359544	MS.gene05474:CDS	60.0%
	ACCGGGTATGGTACAGGGAC+AGG	-	chr6.2:83359492-83359511	MS.gene05474:CDS	60.0%
	CCAGTTCCAGTTCCAGTGCC+AGG	+	chr6.2:83359603-83359622	None:intergenic	60.0%
	GCCACCTGTAGCTCCATAGC+CGG	+	chr6.2:83359529-83359548	None:intergenic	60.0%
	GGAACCGGAACAACCGGCTA+TGG	-	chr6.2:83359513-83359532	MS.gene05474:CDS	60.0%
	GGCTATGGAGCTACAGGTGG+CGG	-	chr6.2:83359528-83359547	MS.gene05474:CDS	60.0%
	GGGACAGGAACCGGAACAAC+CGG	-	chr6.2:83359507-83359526	MS.gene05474:CDS	60.0%
!	CCTGGCACTGGAACTGGAAC+TGG	-	chr6.2:83359600-83359619	MS.gene05474:CDS	60.0%
!!	AACACACGCTGGTAGTGGGG+GGG	-	chr6.2:83359213-83359232	MS.gene05474:CDS	60.0%
!!	GAACACACGCTGGTAGTGGG+GGG	-	chr6.2:83359212-83359231	MS.gene05474:CDS	60.0%
!!	GGAACACACGCTGGTAGTGG+GGG	-	chr6.2:83359211-83359230	MS.gene05474:CDS	60.0%
!!	GGTGGGATGACTGGTGCTAC+TGG	-	chr6.2:83359115-83359134	MS.gene05474:CDS	60.0%
!!	GGAGCTACAGGTGGCGGAAC+TGG	-	chr6.2:83359534-83359553	MS.gene05474:CDS	65.0%
!!	GGTAGTGGGGGGGCTCCCAC+AGG	-	chr6.2:83359223-83359242	MS.gene05474:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	83359010	83360154	83359010	ID=MS.gene05474
chr6.2	mRNA	83359010	83360154	83359010	ID=MS.gene05474.t1;Parent=MS.gene05474
chr6.2	exon	83359920	83360154	83359920	ID=MS.gene05474.t1.exon1;Parent=MS.gene05474.t1
chr6.2	CDS	83359920	83360154	83359920	ID=cds.MS.gene05474.t1;Parent=MS.gene05474.t1
chr6.2	exon	83359010	83359704	83359010	ID=MS.gene05474.t1.exon2;Parent=MS.gene05474.t1
chr6.2	CDS	83359010	83359704	83359010	ID=cds.MS.gene05474.t1;Parent=MS.gene05474.t1

Gene Sequence

>MS.gene05474

ATGTCTCAATATCAACAAGGTGGTGATCAAACTGGTAGGGTTGATGAATATGGAAACCCCTTGAGCCAAGGCCAAGTTGATCAATATGGCAATCCCATTAGTGGTGGTGGGATGACTGGTGCTACTGGTCATGGACACCATCAACAACATCATGGAGTTGACACAGGTGTTGGGAGCAACACAGGTACTGGTACAGGATATGGAACACACGCTGGTAGTGGGGGGGCTCCCACAGGTAACTAATTAGTCTAAGTAATTAAGCTAGATTAATTTTACTAGCTCTCGATATTTTTGTGTCTAATATTTTTGTGTCTGACTGAAGCATGGATATGAAACTTTTTTTTTTCTTTTCAAATTCAAATGATTATCGGTGTTGACGAGTGAGTGCTACATAATTAACTTCAATGTTTTATATATAACTAATGTAACTAACATTTATATCTAATGCAGGTGGTGGTTATGGAGGTAATGATATTGATGGAACCGGGTATGGTACAGGGACAGGAACCGGAACAACCGGCTATGGAGCTACAGGTGGCGGAACTGGACATGATAACAGAGGGGTAGTGGACAAGATTAAGGAGAAAATTCCTGGCACTGGAACTGGAACTGGAACTGGAACAGGTCGTGGAACAACTGGTTATGGTGATACTGGTGTTGGTCAAGGAACAACTGGTGTTGGTCATCAACAACATGGAGAAAATAGAGGAGTTGTGGACAAGATCAAGGAGAAGATTCCTGGCACTGGAACTGGAACTGGAACTGGAACAGGTCGTGGAACAACTGGTTATGGTGATACTGGTGTTGGTCAAGGAACAACTGGTGTTGGTCATCAACAACATGGAGATAATAGAGGAGCTGCGGACAAGATTAAGGAGAAGATTCCTGGTACTGAACAAAATATTTATGGGACAGGAACAGGAACTGGAACTGGAACTGGAACTGGACATGGGACAGGAACTGGAACTGGACATGGACATGGAACAACTACTGGCTATGGAAGCACTGGACAAGAGTATGGAAAAGAGGGTCATCATGGACATGATGAGCAACACCTTGGTGAGAAAAAAGGGATTATGGAAAAGATTAAGGAGAAGATTCCTGGTACTGGATCATGTACTGGACATGGACAAACTAAACCATAA

Protein sequence

>MS.gene05474.t1

MSQYQQGGDQTGRVDEYGNPLSQGQVDQYGNPISGGGMTGATGHGHHQQHHGVDTGVGSNTGTGTGYGTHAGSGGAPTGGGYGGNDIDGTGYGTGTGTGTTGYGATGGGTGHDNRGVVDKIKEKIPGTGTGTGTGTGRGTTGYGDTGVGQGTTGVGHQQHGENRGVVDKIKEKIPGTGTGTGTGTGRGTTGYGDTGVGQGTTGVGHQQHGDNRGAADKIKEKIPGTEQNIYGTGTGTGTGTGTGHGTGTGTGHGHGTTTGYGSTGQEYGKEGHHGHDEQHLGEKKGIMEKIKEKIPGTGSCTGHGQTKP