Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49949.t1 | XP_024641259.1 | 80.6 | 644 | 24 | 4 | 8 | 581 | 475 | 1087 | 8.00E-280 | 972.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49949.t1 | Q9SMV7 | 52.1 | 685 | 216 | 10 | 8 | 580 | 421 | 1105 | 1.0e-179 | 631.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49949.t1 | G7KNH7 | 77.4 | 678 | 49 | 6 | 8 | 581 | 475 | 1152 | 1.4e-278 | 968.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05191 | MS.gene49949 | 0.804033 | 2.62E-49 | -1.69E-46 |
| MS.gene05265 | MS.gene49949 | 0.814033 | 1.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49949.t1 | MTR_6g086270 | 77.581 | 678 | 48 | 6 | 8 | 581 | 475 | 1152 | 0.0 | 1023 |
| MS.gene49949.t1 | MTR_7g109470 | 37.618 | 319 | 143 | 6 | 279 | 550 | 933 | 1242 | 3.58e-52 | 193 |
| MS.gene49949.t1 | MTR_7g109470 | 32.685 | 257 | 130 | 9 | 2 | 221 | 494 | 744 | 1.70e-21 | 99.8 |
| MS.gene49949.t1 | MTR_4g111945 | 35.000 | 280 | 128 | 7 | 292 | 522 | 587 | 861 | 1.07e-37 | 149 |
| MS.gene49949.t1 | MTR_1g100683 | 33.813 | 278 | 126 | 8 | 287 | 514 | 719 | 988 | 1.90e-32 | 134 |
| MS.gene49949.t1 | MTR_1g100683 | 33.813 | 278 | 126 | 8 | 287 | 514 | 719 | 988 | 1.90e-32 | 134 |
| MS.gene49949.t1 | MTR_5g093110 | 30.292 | 274 | 133 | 10 | 323 | 547 | 527 | 791 | 3.18e-20 | 95.5 |
| MS.gene49949.t1 | MTR_1g045670 | 29.187 | 209 | 111 | 3 | 368 | 540 | 765 | 972 | 8.09e-16 | 81.6 |
| MS.gene49949.t1 | MTR_5g068600 | 29.412 | 153 | 88 | 3 | 341 | 492 | 409 | 542 | 6.34e-13 | 72.4 |
| MS.gene49949.t1 | MTR_5g068600 | 29.412 | 153 | 88 | 3 | 341 | 492 | 309 | 442 | 6.37e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49949.t1 | AT3G24495 | 52.117 | 685 | 216 | 10 | 8 | 580 | 421 | 1105 | 0.0 | 667 |
| MS.gene49949.t1 | AT3G24495 | 48.879 | 446 | 160 | 7 | 8 | 385 | 421 | 866 | 4.40e-132 | 407 |
| MS.gene49949.t1 | AT4G02070 | 40.678 | 295 | 126 | 6 | 287 | 535 | 993 | 1284 | 6.27e-51 | 189 |
| MS.gene49949.t1 | AT4G02070 | 30.620 | 258 | 134 | 6 | 8 | 221 | 540 | 796 | 8.53e-20 | 94.7 |
| MS.gene49949.t1 | AT4G02070 | 40.678 | 295 | 126 | 6 | 287 | 535 | 990 | 1281 | 7.13e-51 | 189 |
| MS.gene49949.t1 | AT4G02070 | 30.620 | 258 | 134 | 6 | 8 | 221 | 537 | 793 | 9.72e-20 | 94.4 |
| MS.gene49949.t1 | AT3G18524 | 33.117 | 308 | 147 | 8 | 261 | 522 | 564 | 858 | 5.28e-37 | 147 |
| MS.gene49949.t1 | AT4G25540 | 31.595 | 326 | 157 | 10 | 287 | 558 | 730 | 1043 | 2.23e-32 | 133 |
| MS.gene49949.t1 | AT4G17380 | 31.955 | 266 | 132 | 7 | 306 | 528 | 491 | 750 | 1.67e-29 | 124 |
| MS.gene49949.t1 | AT4G17380 | 40.000 | 165 | 91 | 3 | 306 | 468 | 491 | 649 | 3.13e-27 | 117 |
| MS.gene49949.t1 | AT3G20475 | 29.057 | 265 | 132 | 8 | 299 | 515 | 497 | 753 | 7.38e-22 | 100 |
| MS.gene49949.t1 | AT3G20475 | 28.897 | 263 | 131 | 8 | 299 | 513 | 497 | 751 | 3.99e-20 | 95.1 |
| MS.gene49949.t1 | AT3G24320 | 31.285 | 179 | 91 | 2 | 368 | 514 | 519 | 697 | 2.39e-16 | 83.2 |
| MS.gene49949.t1 | AT3G24320 | 31.285 | 179 | 91 | 2 | 368 | 514 | 764 | 942 | 2.48e-16 | 83.6 |
| MS.gene49949.t1 | AT3G20475 | 27.530 | 247 | 123 | 8 | 299 | 497 | 497 | 735 | 7.31e-16 | 81.6 |
| MS.gene49949.t1 | AT5G54090 | 33.600 | 125 | 77 | 2 | 345 | 468 | 419 | 538 | 5.14e-14 | 75.9 |
| MS.gene49949.t1 | AT1G65070 | 25.850 | 294 | 188 | 10 | 198 | 466 | 209 | 497 | 2.67e-12 | 70.5 |
| MS.gene49949.t1 | AT1G65070 | 25.676 | 296 | 190 | 10 | 198 | 468 | 209 | 499 | 3.95e-12 | 69.7 |
| MS.gene49949.t1 | AT1G65070 | 25.850 | 294 | 188 | 10 | 198 | 466 | 209 | 497 | 4.02e-12 | 69.7 |
| MS.gene49949.t1 | AT1G65070 | 25.850 | 294 | 188 | 10 | 198 | 466 | 209 | 497 | 9.55e-12 | 68.2 |
Find 122 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTGTAACATCATGATTT+TGG | 0.212608 | 6.4:+59565198 | None:intergenic |
| TTTAGAAAATTCTCTTTAAA+TGG | 0.212617 | 6.4:-59566879 | MS.gene49949:intron |
| CGGATTGCAGGTTGCACTTA+TGG | 0.237284 | 6.4:-59563808 | MS.gene49949:CDS |
| TATATGTCCGATCTTATATT+TGG | 0.239021 | 6.4:-59565223 | MS.gene49949:CDS |
| CATCTGGAAAGCGGCTTCTT+AGG | 0.241950 | 6.4:-59565567 | MS.gene49949:CDS |
| GCAATATGAGACACAATTTC+AGG | 0.255684 | 6.4:+59565466 | None:intergenic |
| TACCTGTCTGGCTGTTATTA+TGG | 0.274141 | 6.4:-59564810 | MS.gene49949:CDS |
| TTATCCATACCAGGTTTATA+AGG | 0.280087 | 6.4:-59565797 | MS.gene49949:CDS |
| AAATGCTTTCTCAGCTTCTT+TGG | 0.283229 | 6.4:+59566899 | None:intergenic |
| TCTTCGTAAGCTTCCAGATT+TGG | 0.287142 | 6.4:-59565437 | MS.gene49949:CDS |
| AACTAGTTCCTGATCTTGTT+TGG | 0.297603 | 6.4:+59563872 | None:intergenic |
| CTTGTTATCCTTGATGAATT+AGG | 0.318697 | 6.4:-59564274 | MS.gene49949:CDS |
| CCCTATCTTACTGCCCTTGT+TGG | 0.326443 | 6.4:-59565371 | MS.gene49949:CDS |
| TTATAAGGGTTGCCTCAAAA+TGG | 0.333696 | 6.4:-59565782 | MS.gene49949:CDS |
| GATGCGTCATGTTCTGCTTT+GGG | 0.334144 | 6.4:-59567189 | MS.gene49949:CDS |
| AAAGATTTCTAGATTTATAT+AGG | 0.335192 | 6.4:+59565750 | None:intergenic |
| ATGCTGAAGGAATTAATAAT+AGG | 0.341205 | 6.4:-59565519 | MS.gene49949:CDS |
| ACATGACGCATCATCATCTA+TGG | 0.347807 | 6.4:+59567200 | None:intergenic |
| TATATAAATCTAGAAATCTT+TGG | 0.357312 | 6.4:-59565748 | MS.gene49949:CDS |
| TTCCTATACCGGCTTGCCTC+TGG | 0.357602 | 6.4:-59563849 | MS.gene49949:CDS |
| GATAACTGTGTTACTTCATC+TGG | 0.369132 | 6.4:-59565583 | MS.gene49949:CDS |
| ACCAACAAGGGCAGTAAGAT+AGG | 0.377519 | 6.4:+59565370 | None:intergenic |
| TCCGGAGAGCTACGGATTGC+AGG | 0.382813 | 6.4:-59563820 | MS.gene49949:CDS |
| AGCAAGTATTGTGAGTGTTT+CGG | 0.384001 | 6.4:+59565169 | None:intergenic |
| CCAAGTAATAGTTCCAAATC+TGG | 0.384149 | 6.4:+59565424 | None:intergenic |
| CCAGATTTGGAACTATTACT+TGG | 0.384918 | 6.4:-59565424 | MS.gene49949:CDS |
| TTTCAAATCTTCATGAAGAA+TGG | 0.394863 | 6.4:-59563683 | MS.gene49949:CDS |
| CCATTTGCTCTTGGTGAGAC+TGG | 0.398517 | 6.4:-59564947 | MS.gene49949:CDS |
| TGATGCGTCATGTTCTGCTT+TGG | 0.402454 | 6.4:-59567190 | MS.gene49949:CDS |
| TCGCCAAGGATCATGTCATT+TGG | 0.404349 | 6.4:+59564911 | None:intergenic |
| TAGTACATCAATGCAATTGA+TGG | 0.407084 | 6.4:+59565100 | None:intergenic |
| CGTTCATATATAATTTCCTT+GGG | 0.410145 | 6.4:+59567030 | None:intergenic |
| GCGTTCATATATAATTTCCT+TGG | 0.421583 | 6.4:+59567029 | None:intergenic |
| TATCCATACCAGGTTTATAA+GGG | 0.422687 | 6.4:-59565796 | MS.gene49949:CDS |
| GCTTGCCTCTGGAGCATGTC+CGG | 0.423670 | 6.4:-59563838 | MS.gene49949:CDS |
| TTACGGCATCCATTTGCTCT+TGG | 0.431817 | 6.4:-59564956 | MS.gene49949:CDS |
| TCTGGCTGTTATTATGGCCC+AGG | 0.438091 | 6.4:-59564804 | MS.gene49949:intron |
| TGCTCAAAATGAAGGGATTA+CGG | 0.439720 | 6.4:-59564973 | MS.gene49949:CDS |
| ATTTCTAGATTTATATAGGT+TGG | 0.440815 | 6.4:+59565754 | None:intergenic |
| TTCCTGATCTTGTTTGGAAA+GGG | 0.445769 | 6.4:+59563878 | None:intergenic |
| ATTCCTTCAGCATCTTTCAA+TGG | 0.446375 | 6.4:+59565529 | None:intergenic |
| AGGATCATGTCATTTGGAAT+AGG | 0.450282 | 6.4:+59564917 | None:intergenic |
| CTCCAGAGGCAAGCCGGTAT+AGG | 0.450586 | 6.4:+59563847 | None:intergenic |
| CCTCGCACGATGCTTCTGAC+AGG | 0.454092 | 6.4:-59564869 | MS.gene49949:CDS |
| AACTGTGAACATTGCTTCAA+AGG | 0.457861 | 6.4:-59563769 | MS.gene49949:CDS |
| TCTGCTCTTGGTGGACTGAT+AGG | 0.461211 | 6.4:-59565955 | MS.gene49949:CDS |
| CAACAGATGAAAATATCAAT+TGG | 0.461934 | 6.4:-59563741 | MS.gene49949:CDS |
| TAGATACATTGGTCTGTTTG+CGG | 0.463023 | 6.4:-59563599 | MS.gene49949:CDS |
| GAAAGCGGCTTCTTAGGAAC+TGG | 0.463529 | 6.4:-59565561 | MS.gene49949:CDS |
| TAGATGAGGTCCTTCAGAAT+GGG | 0.465325 | 6.4:-59565825 | MS.gene49949:CDS |
| CCAGTCTCACCAAGAGCAAA+TGG | 0.468441 | 6.4:+59564947 | None:intergenic |
| ATGCGTCATGTTCTGCTTTG+GGG | 0.471188 | 6.4:-59567188 | MS.gene49949:CDS |
| AGCGAGGATGGTGGAAAAGC+AGG | 0.472404 | 6.4:-59565721 | MS.gene49949:intron |
| CACCTATATGAAAGTTATCA+AGG | 0.476231 | 6.4:-59567235 | None:intergenic |
| TATTCTTGTGATAGACATCA+AGG | 0.477306 | 6.4:+59563653 | None:intergenic |
| TATCCTTGATGAATTAGGTC+GGG | 0.479062 | 6.4:-59564269 | MS.gene49949:CDS |
| GAAATCACGTTATCTGCTCT+TGG | 0.480437 | 6.4:-59565967 | MS.gene49949:CDS |
| TTTCAGGGGAAGCTATTAGA+TGG | 0.480963 | 6.4:+59565482 | None:intergenic |
| TACCCTTTCCAAACAAGATC+AGG | 0.483605 | 6.4:-59563880 | MS.gene49949:CDS |
| CAACCCTTATAAACCTGGTA+TGG | 0.486371 | 6.4:+59565793 | None:intergenic |
| TTGCAGGTTGCACTTATGGC+TGG | 0.487304 | 6.4:-59563804 | MS.gene49949:CDS |
| GATATCATCTTCACACGCCT+TGG | 0.488497 | 6.4:-59564581 | MS.gene49949:CDS |
| GGCCATAATAACAGCCAGAC+AGG | 0.493847 | 6.4:+59564808 | None:intergenic |
| ACCTGCAATCCGTAGCTCTC+CGG | 0.497939 | 6.4:+59563819 | None:intergenic |
| GTTCCTGATCTTGTTTGGAA+AGG | 0.503305 | 6.4:+59563877 | None:intergenic |
| GAGCAGATAACGTGATTTCA+CGG | 0.503954 | 6.4:+59565971 | None:intergenic |
| CCAACAAGGGCAGTAAGATA+GGG | 0.504056 | 6.4:+59565371 | None:intergenic |
| AGGTCATCTGAATAGATTGA+TGG | 0.514484 | 6.4:-59565935 | MS.gene49949:intron |
| TGGTAAAGAAAATATTGAAA+CGG | 0.515566 | 6.4:-59565351 | MS.gene49949:CDS |
| ATGATCCTTGGCGAGAATGA+AGG | 0.518625 | 6.4:-59564902 | MS.gene49949:CDS |
| AGCACCTGTGCTCAAAATGA+AGG | 0.520226 | 6.4:-59564981 | MS.gene49949:CDS |
| GATTTCACGGTGAATCACTT+TGG | 0.520935 | 6.4:+59565984 | None:intergenic |
| GAATTGTGTTCTTTCAGTTG+TGG | 0.526845 | 6.4:-59564603 | MS.gene49949:CDS |
| CTAGATGAGGTCCTTCAGAA+TGG | 0.527326 | 6.4:-59565826 | MS.gene49949:CDS |
| ATTCCAAATGACATGATCCT+TGG | 0.529480 | 6.4:-59564914 | MS.gene49949:CDS |
| TTTCATGTGGAACTATGTCT+AGG | 0.532162 | 6.4:-59565052 | MS.gene49949:CDS |
| ATCTTTGGCAATAGCGAGGA+TGG | 0.534732 | 6.4:-59565733 | MS.gene49949:CDS |
| ATCCTTGATGAATTAGGTCG+GGG | 0.540679 | 6.4:-59564268 | MS.gene49949:CDS |
| GCTTCTGACAGGGCCAAACA+TGG | 0.541218 | 6.4:-59564858 | MS.gene49949:CDS |
| TGAGGCAACCCTTATAAACC+TGG | 0.542198 | 6.4:+59565788 | None:intergenic |
| TGGGGACATTTATCCATACC+AGG | 0.550123 | 6.4:-59565806 | MS.gene49949:CDS |
| AGGAGTCAATTGAAGTGTTG+TGG | 0.551700 | 6.4:+59566107 | None:intergenic |
| GACATGCTCCAGAGGCAAGC+CGG | 0.553896 | 6.4:+59563841 | None:intergenic |
| TTCTGTACACTCAATAAAGA+AGG | 0.555038 | 6.4:+59564333 | None:intergenic |
| TATGCGGTCGATCACTGACT+TGG | 0.556182 | 6.4:-59566085 | MS.gene49949:CDS |
| ATCACGTTATCTGCTCTTGG+TGG | 0.556374 | 6.4:-59565964 | MS.gene49949:CDS |
| CAATATGAGACACAATTTCA+GGG | 0.558536 | 6.4:+59565467 | None:intergenic |
| TTCCCCGACCTAATTCATCA+AGG | 0.560248 | 6.4:+59564266 | None:intergenic |
| CTCGCACGATGCTTCTGACA+GGG | 0.560352 | 6.4:-59564868 | MS.gene49949:CDS |
| GATGTCTATCACAAGAATAG+AGG | 0.565644 | 6.4:-59563649 | MS.gene49949:CDS |
| TTTGGCACCAAATATAAGAT+CGG | 0.566329 | 6.4:+59565216 | None:intergenic |
| GCCCGCCTTCATTCTCGCCA+AGG | 0.570412 | 6.4:+59564897 | None:intergenic |
| GCCTGCCATGATTCTATCTG+TGG | 0.571781 | 6.4:+59564556 | None:intergenic |
| TTATCCTTGATGAATTAGGT+CGG | 0.572163 | 6.4:-59564270 | MS.gene49949:CDS |
| GATAAATGTCCCCATTCTGA+AGG | 0.577149 | 6.4:+59565815 | None:intergenic |
| ACGTTGGCACTAACTATGAC+AGG | 0.577173 | 6.4:+59565029 | None:intergenic |
| TGATTCTATCTGTGGCTCCA+AGG | 0.577889 | 6.4:+59564564 | None:intergenic |
| TGCGTCATGTTCTGCTTTGG+GGG | 0.580650 | 6.4:-59567187 | MS.gene49949:CDS |
| GGAGCATGTCCGGAGAGCTA+CGG | 0.584126 | 6.4:-59563828 | MS.gene49949:CDS |
| GCCACAGATAGAATCATGGC+AGG | 0.585562 | 6.4:-59564557 | MS.gene49949:CDS |
| TCCTTGGCGAGAATGAAGGC+GGG | 0.589673 | 6.4:-59564898 | MS.gene49949:CDS |
| TGGAGCCACAGATAGAATCA+TGG | 0.594387 | 6.4:-59564561 | MS.gene49949:CDS |
| ATCCTTGGCGAGAATGAAGG+CGG | 0.599023 | 6.4:-59564899 | MS.gene49949:CDS |
| AAGGGTTGCCTCAAAATGGA+TGG | 0.610093 | 6.4:-59565778 | MS.gene49949:CDS |
| GCACCTGTGCTCAAAATGAA+GGG | 0.611305 | 6.4:-59564980 | MS.gene49949:CDS |
| GTGTTACTTCATCTGGAAAG+CGG | 0.623048 | 6.4:-59565576 | MS.gene49949:CDS |
| AATTAATAATAGGCTTGATG+TGG | 0.629197 | 6.4:-59565509 | MS.gene49949:CDS |
| AAGTCAGTGATCGACCGCAT+AGG | 0.633221 | 6.4:+59566087 | None:intergenic |
| GCTCTCCGGACATGCTCCAG+AGG | 0.634093 | 6.4:+59563833 | None:intergenic |
| GAAAGAACACAATTCTCGCA+CGG | 0.639273 | 6.4:+59564611 | None:intergenic |
| AGATGAGGTCCTTCAGAATG+GGG | 0.642652 | 6.4:-59565824 | MS.gene49949:CDS |
| TGTCCATTGAAAGATGCTGA+AGG | 0.643808 | 6.4:-59565532 | MS.gene49949:CDS |
| CTTCTGACAGGGCCAAACAT+GGG | 0.644124 | 6.4:-59564857 | MS.gene49949:CDS |
| CCTGTCAGAAGCATCGTGCG+AGG | 0.646554 | 6.4:+59564869 | None:intergenic |
| TTTGGCAATAGCGAGGATGG+TGG | 0.651475 | 6.4:-59565730 | MS.gene49949:CDS |
| AAGTCTTACAGCATATGCAA+TGG | 0.657089 | 6.4:+59564222 | None:intergenic |
| AGAAATCTTTGGCAATAGCG+AGG | 0.662140 | 6.4:-59565737 | MS.gene49949:CDS |
| CTGACAGGGCCAAACATGGG+TGG | 0.662756 | 6.4:-59564854 | MS.gene49949:CDS |
| AATATGAGACACAATTTCAG+GGG | 0.688820 | 6.4:+59565468 | None:intergenic |
| AATTTCAAAGATAATACACA+TGG | 0.709003 | 6.4:+59565259 | None:intergenic |
| GAAATTATATATGAACGCAG+AGG | 0.710487 | 6.4:-59567024 | MS.gene49949:intron |
| CACTTCAATTGACTCCTATG+CGG | 0.716062 | 6.4:-59566101 | MS.gene49949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATAACAAACATTTT+GGG | - | chr6.4:59564107-59564126 | MS.gene49949:intron | 10.0% |
| !! | TATATAAATCTAGAAATCTT+TGG | - | chr6.4:59565052-59565071 | MS.gene49949:CDS | 15.0% |
| !! | TTTAGAAAATTCTCTTTAAA+TGG | - | chr6.4:59563921-59563940 | MS.gene49949:intron | 15.0% |
| !!! | AAAGATTTCTAGATTTATAT+AGG | + | chr6.4:59565053-59565072 | None:intergenic | 15.0% |
| !!! | ATTTAATAACAAACATTTTG+GGG | - | chr6.4:59564108-59564127 | MS.gene49949:intron | 15.0% |
| !!! | CAATTTAATAACAAACATTT+TGG | - | chr6.4:59564106-59564125 | MS.gene49949:intron | 15.0% |
| !!! | TTAAATGATATTTTTGATTC+TGG | - | chr6.4:59566631-59566650 | MS.gene49949:intron | 15.0% |
| !! | AATGAATAACATACAGTAAT+TGG | + | chr6.4:59564137-59564156 | None:intergenic | 20.0% |
| !! | AATTACTGTATGTTATTCAT+TGG | - | chr6.4:59564136-59564155 | MS.gene49949:intron | 20.0% |
| !! | AATTTCAAAGATAATACACA+TGG | + | chr6.4:59565544-59565563 | None:intergenic | 20.0% |
| !! | ATAAGAAATAATCCTATACA+AGG | + | chr6.4:59563852-59563871 | None:intergenic | 20.0% |
| !! | ATACATATTCAACATAGAAA+AGG | + | chr6.4:59564602-59564621 | None:intergenic | 20.0% |
| !! | TAAATTGTTATACAAAACTG+TGG | + | chr6.4:59564093-59564112 | None:intergenic | 20.0% |
| !! | TGGTAAAGAAAATATTGAAA+CGG | - | chr6.4:59565449-59565468 | MS.gene49949:CDS | 20.0% |
| !! | TTAGGCTATTAATAATTCTA+TGG | - | chr6.4:59566754-59566773 | MS.gene49949:intron | 20.0% |
| !!! | AATACTTGCTAAACTATTTT+TGG | - | chr6.4:59565644-59565663 | MS.gene49949:intron | 20.0% |
| !!! | AATATTTTCTTTACCAACAA+GGG | + | chr6.4:59565445-59565464 | None:intergenic | 20.0% |
| !!! | ATGCATTGAAAAACATTTTT+AGG | - | chr6.4:59566736-59566755 | MS.gene49949:intron | 20.0% |
| !!! | ATTTCTAGATTTATATAGGT+TGG | + | chr6.4:59565049-59565068 | None:intergenic | 20.0% |
| !!! | TAAAAATGTTTTTCAATGCA+TGG | + | chr6.4:59566737-59566756 | None:intergenic | 20.0% |
| !!! | TAAAGATACATGATGTTTTA+TGG | - | chr6.4:59564181-59564200 | MS.gene49949:intron | 20.0% |
| !!! | TGAAGTACAATATTTTTACA+GGG | - | chr6.4:59563874-59563893 | MS.gene49949:CDS | 20.0% |
| ! | AAAACAGAATATCTCAAATG+TGG | + | chr6.4:59564358-59564377 | None:intergenic | 25.0% |
| ! | AATTAATAATAGGCTTGATG+TGG | - | chr6.4:59565291-59565310 | MS.gene49949:intron | 25.0% |
| ! | AATTCCATTGGAAAAATTGA+TGG | + | chr6.4:59566332-59566351 | None:intergenic | 25.0% |
| ! | ATAAGTACAAGTAATGATAG+TGG | - | chr6.4:59565796-59565815 | MS.gene49949:CDS | 25.0% |
| ! | ATATCAGCTTAATTTCAAAG+GGG | + | chr6.4:59564290-59564309 | None:intergenic | 25.0% |
| ! | ATATTTACATACAACTTCCA+AGG | + | chr6.4:59564046-59564065 | None:intergenic | 25.0% |
| ! | ATGATATCTGGAAATAGATA+TGG | - | chr6.4:59564233-59564252 | MS.gene49949:CDS | 25.0% |
| ! | ATGCTGAAGGAATTAATAAT+AGG | - | chr6.4:59565281-59565300 | MS.gene49949:intron | 25.0% |
| ! | CAACAGATGAAAATATCAAT+TGG | - | chr6.4:59567059-59567078 | MS.gene49949:intron | 25.0% |
| ! | CAGTTTACTTCATGAATTTA+TGG | - | chr6.4:59566409-59566428 | MS.gene49949:intron | 25.0% |
| ! | CATATCAGCTTAATTTCAAA+GGG | + | chr6.4:59564291-59564310 | None:intergenic | 25.0% |
| ! | CGTTCATATATAATTTCCTT+GGG | + | chr6.4:59563773-59563792 | None:intergenic | 25.0% |
| ! | GAAGTTGTATGTAAATATCA+AGG | - | chr6.4:59564048-59564067 | MS.gene49949:intron | 25.0% |
| ! | TATATGTCCGATCTTATATT+TGG | - | chr6.4:59565577-59565596 | MS.gene49949:CDS | 25.0% |
| ! | TATCAATTGGCAAAAACTTT+AGG | - | chr6.4:59567072-59567091 | MS.gene49949:intron | 25.0% |
| ! | TGTATGTAAATATCAAGGTT+AGG | - | chr6.4:59564053-59564072 | MS.gene49949:intron | 25.0% |
| ! | TTTCAAATCTTCATGAAGAA+TGG | - | chr6.4:59567117-59567136 | MS.gene49949:intron | 25.0% |
| !! | CAATATTTTCTTTACCAACA+AGG | + | chr6.4:59565446-59565465 | None:intergenic | 25.0% |
| !! | CAATTGATATTTTCATCTGT+TGG | + | chr6.4:59567061-59567080 | None:intergenic | 25.0% |
| !! | TATCTGTAACATCATGATTT+TGG | + | chr6.4:59565605-59565624 | None:intergenic | 25.0% |
| !!! | CTAACTATGTTTTTGTTTTC+AGG | - | chr6.4:59566442-59566461 | MS.gene49949:intron | 25.0% |
| !!! | GAAGTACAATATTTTTACAG+GGG | - | chr6.4:59563875-59563894 | MS.gene49949:CDS | 25.0% |
| !!! | GTGAAGTACAATATTTTTAC+AGG | - | chr6.4:59563873-59563892 | MS.gene49949:CDS | 25.0% |
| !!! | TGATGATGTTTTAGATACAT+TGG | - | chr6.4:59567190-59567209 | MS.gene49949:CDS | 25.0% |
| AAAATTACAGGATAAGGAAG+TGG | + | chr6.4:59566711-59566730 | None:intergenic | 30.0% | |
| AACCCTCTAACATATTACAT+CGG | - | chr6.4:59565134-59565153 | MS.gene49949:CDS | 30.0% | |
| AATATGAGACACAATTTCAG+GGG | + | chr6.4:59565335-59565354 | None:intergenic | 30.0% | |
| AGTGATTTAATTCACTCGAA+AGG | - | chr6.4:59564752-59564771 | MS.gene49949:intron | 30.0% | |
| AGTTTAGTAATACACCAACA+TGG | - | chr6.4:59563965-59563984 | MS.gene49949:intron | 30.0% | |
| CAATACTTTCAATACCATGT+TGG | + | chr6.4:59563982-59564001 | None:intergenic | 30.0% | |
| CAATATGAGACACAATTTCA+GGG | + | chr6.4:59565336-59565355 | None:intergenic | 30.0% | |
| CACTCGAAAGGATAATTTAA+GGG | - | chr6.4:59564764-59564783 | MS.gene49949:intron | 30.0% | |
| CAGAAACTACATCCAAAAAT+AGG | + | chr6.4:59563684-59563703 | None:intergenic | 30.0% | |
| CCATATCAGCTTAATTTCAA+AGG | + | chr6.4:59564292-59564311 | None:intergenic | 30.0% | |
| GAAATAGATATGGAACAAAG+TGG | - | chr6.4:59564243-59564262 | MS.gene49949:CDS | 30.0% | |
| GAAATTATATATGAACGCAG+AGG | - | chr6.4:59563776-59563795 | MS.gene49949:CDS | 30.0% | |
| GCGTTCATATATAATTTCCT+TGG | + | chr6.4:59563774-59563793 | None:intergenic | 30.0% | |
| GCTAAAAAAAGCTAGTAGAA+TGG | + | chr6.4:59566035-59566054 | None:intergenic | 30.0% | |
| GTGCTTTATGATTACATTAG+AGG | - | chr6.4:59566296-59566315 | MS.gene49949:intron | 30.0% | |
| TAGTACATCAATGCAATTGA+TGG | + | chr6.4:59565703-59565722 | None:intergenic | 30.0% | |
| TATCAGCTTAATTTCAAAGG+GGG | + | chr6.4:59564289-59564308 | None:intergenic | 30.0% | |
| TATCCATACCAGGTTTATAA+GGG | - | chr6.4:59565004-59565023 | MS.gene49949:intron | 30.0% | |
| TATTCTTGTGATAGACATCA+AGG | + | chr6.4:59567150-59567169 | None:intergenic | 30.0% | |
| TCACTCGAAAGGATAATTTA+AGG | - | chr6.4:59564763-59564782 | MS.gene49949:intron | 30.0% | |
| TGGAACAGAAACAAATAATG+AGG | + | chr6.4:59564663-59564682 | None:intergenic | 30.0% | |
| TTACTTGTACTTATTGACGT+TGG | + | chr6.4:59565790-59565809 | None:intergenic | 30.0% | |
| TTATCCATACCAGGTTTATA+AGG | - | chr6.4:59565003-59565022 | MS.gene49949:intron | 30.0% | |
| TTATCCTTGATGAATTAGGT+CGG | - | chr6.4:59566530-59566549 | MS.gene49949:intron | 30.0% | |
| TTCAAATCTGTACCTTGTAT+AGG | - | chr6.4:59563837-59563856 | MS.gene49949:CDS | 30.0% | |
| TTCCGATGTAATATGTTAGA+GGG | + | chr6.4:59565139-59565158 | None:intergenic | 30.0% | |
| TTCTGTACACTCAATAAAGA+AGG | + | chr6.4:59566470-59566489 | None:intergenic | 30.0% | |
| TTTCCGATGTAATATGTTAG+AGG | + | chr6.4:59565140-59565159 | None:intergenic | 30.0% | |
| TTTGGCACCAAATATAAGAT+CGG | + | chr6.4:59565587-59565606 | None:intergenic | 30.0% | |
| ! | AAAGTGCTCAAAAATTCCAT+TGG | + | chr6.4:59566344-59566363 | None:intergenic | 30.0% |
| ! | AGATAGGGTTTGATACTTTT+AGG | + | chr6.4:59565417-59565436 | None:intergenic | 30.0% |
| ! | CATTGGAAAAATTGATGGAT+AGG | + | chr6.4:59566327-59566346 | None:intergenic | 30.0% |
| ! | CTATCCATCAATTTTTCCAA+TGG | - | chr6.4:59566325-59566344 | MS.gene49949:intron | 30.0% |
| ! | CTTGTTATCCTTGATGAATT+AGG | - | chr6.4:59566526-59566545 | MS.gene49949:intron | 30.0% |
| ! | TAACCTTTTCAATCAGATGT+CGG | + | chr6.4:59566795-59566814 | None:intergenic | 30.0% |
| ! | TTTCCAAGCTTTTGATACAA+AGG | - | chr6.4:59566105-59566124 | MS.gene49949:CDS | 30.0% |
| !! | CCTTTGAAATTAAGCTGATA+TGG | - | chr6.4:59564289-59564308 | MS.gene49949:CDS | 30.0% |
| !! | TAATAACAAACATTTTGGGG+TGG | - | chr6.4:59564111-59564130 | MS.gene49949:intron | 30.0% |
| !!! | CAATGTTCACAGTTTTTTCT+GGG | + | chr6.4:59567025-59567044 | None:intergenic | 30.0% |
| !!! | CTACTAGCTTTTTTTAGCTT+AGG | - | chr6.4:59566037-59566056 | MS.gene49949:intron | 30.0% |
| !!! | TTTTGAGCACTTTGAAATTC+AGG | - | chr6.4:59566351-59566370 | MS.gene49949:intron | 30.0% |
| AAAAGCTAGTAGAATGGAGA+AGG | + | chr6.4:59566029-59566048 | None:intergenic | 35.0% | |
| AAATAGGAACCAGTTAAGGA+AGG | + | chr6.4:59563668-59563687 | None:intergenic | 35.0% | |
| AAATGCTTTCTCAGCTTCTT+TGG | + | chr6.4:59563904-59563923 | None:intergenic | 35.0% | |
| AACTAGTTCCTGATCTTGTT+TGG | + | chr6.4:59566931-59566950 | None:intergenic | 35.0% | |
| AACTGTGAACATTGCTTCAA+AGG | - | chr6.4:59567031-59567050 | MS.gene49949:CDS | 35.0% | |
| AAGTCTTACAGCATATGCAA+TGG | + | chr6.4:59566581-59566600 | None:intergenic | 35.0% | |
| AATAGGAACCAGTTAAGGAA+GGG | + | chr6.4:59563667-59563686 | None:intergenic | 35.0% | |
| AATGCATGGAGCAAAATTAC+AGG | + | chr6.4:59566723-59566742 | None:intergenic | 35.0% | |
| AGGTCATCTGAATAGATTGA+TGG | - | chr6.4:59564865-59564884 | MS.gene49949:CDS | 35.0% | |
| ATAATTCTATGGATGCTCAC+AGG | - | chr6.4:59566765-59566784 | MS.gene49949:intron | 35.0% | |
| ATATCATAGAGATGCAGGAA+AGG | + | chr6.4:59564220-59564239 | None:intergenic | 35.0% | |
| ATTCCAAATGACATGATCCT+TGG | - | chr6.4:59565886-59565905 | MS.gene49949:intron | 35.0% | |
| ATTCCGACATCTGATTGAAA+AGG | - | chr6.4:59566789-59566808 | MS.gene49949:intron | 35.0% | |
| ATTCCTTCAGCATCTTTCAA+TGG | + | chr6.4:59565274-59565293 | None:intergenic | 35.0% | |
| CCAAAAATAGGAACCAGTTA+AGG | + | chr6.4:59563672-59563691 | None:intergenic | 35.0% | |
| CCAAGTAATAGTTCCAAATC+TGG | + | chr6.4:59565379-59565398 | None:intergenic | 35.0% | |
| CTTCCTTTGTATCAAAAGCT+TGG | + | chr6.4:59566111-59566130 | None:intergenic | 35.0% | |
| GAATTGTGTTCTTTCAGTTG+TGG | - | chr6.4:59566197-59566216 | MS.gene49949:intron | 35.0% | |
| GAGATGCAAATTCTTGTTAG+CGG | + | chr6.4:59566850-59566869 | None:intergenic | 35.0% | |
| GATGTCTATCACAAGAATAG+AGG | - | chr6.4:59567151-59567170 | MS.gene49949:intron | 35.0% | |
| GCAATATGAGACACAATTTC+AGG | + | chr6.4:59565337-59565356 | None:intergenic | 35.0% | |
| TACTTCATGAATTTATGGCG+TGG | - | chr6.4:59566414-59566433 | MS.gene49949:intron | 35.0% | |
| TATCCTTGATGAATTAGGTC+GGG | - | chr6.4:59566531-59566550 | MS.gene49949:intron | 35.0% | |
| TCAAAATACCCTTCCTTAAC+TGG | - | chr6.4:59563656-59563675 | MS.gene49949:CDS | 35.0% | |
| TCTCAAATGTGGAGATGTTA+CGG | + | chr6.4:59564347-59564366 | None:intergenic | 35.0% | |
| TGCTCAAAATGAAGGGATTA+CGG | - | chr6.4:59565827-59565846 | MS.gene49949:CDS | 35.0% | |
| TGGAGCAAAATTACAGGATA+AGG | + | chr6.4:59566717-59566736 | None:intergenic | 35.0% | |
| TTATAAGGGTTGCCTCAAAA+TGG | - | chr6.4:59565018-59565037 | MS.gene49949:intron | 35.0% | |
| TTCTTTACTATGCTTTGCCT+TGG | - | chr6.4:59564026-59564045 | MS.gene49949:intron | 35.0% | |
| TTGAAGTGTGTTCAAGCTAA+AGG | + | chr6.4:59563822-59563841 | None:intergenic | 35.0% | |
| TTTCATGTGGAACTATGTCT+AGG | - | chr6.4:59565748-59565767 | MS.gene49949:CDS | 35.0% | |
| ! | AGCAAGTATTGTGAGTGTTT+CGG | + | chr6.4:59565634-59565653 | None:intergenic | 35.0% |
| ! | AGGATCATGTCATTTGGAAT+AGG | + | chr6.4:59565886-59565905 | None:intergenic | 35.0% |
| ! | ATGGTTCTATACTTACCATG+AGG | - | chr6.4:59566665-59566684 | MS.gene49949:intron | 35.0% |
| ! | CCAGATTTGGAACTATTACT+TGG | - | chr6.4:59565376-59565395 | MS.gene49949:CDS | 35.0% |
| ! | TAGATACATTGGTCTGTTTG+CGG | - | chr6.4:59567201-59567220 | MS.gene49949:CDS | 35.0% |
| ! | TCTTTTCATACAGCTAGATG+AGG | - | chr6.4:59564961-59564980 | MS.gene49949:CDS | 35.0% |
| ! | TTCCTGATCTTGTTTGGAAA+GGG | + | chr6.4:59566925-59566944 | None:intergenic | 35.0% |
| !! | CACTTTGAAATTCAGGATTG+TGG | - | chr6.4:59566358-59566377 | MS.gene49949:intron | 35.0% |
| !! | CCTTAACTGGTTCCTATTTT+TGG | - | chr6.4:59563669-59563688 | MS.gene49949:CDS | 35.0% |
| !! | GATAACTGTGTTACTTCATC+TGG | - | chr6.4:59565217-59565236 | MS.gene49949:CDS | 35.0% |
| !! | GATTCTGGTTTAGAGTACAA+TGG | - | chr6.4:59566646-59566665 | MS.gene49949:intron | 35.0% |
| !! | TTTTGGAGAAAGCTAGTCAA+TGG | - | chr6.4:59565661-59565680 | MS.gene49949:intron | 35.0% |
| !!! | AGGAACTAGTTTTCCTATAC+CGG | - | chr6.4:59566940-59566959 | MS.gene49949:intron | 35.0% |
| !!! | GCAATGTTCACAGTTTTTTC+TGG | + | chr6.4:59567026-59567045 | None:intergenic | 35.0% |
| !!! | GTTACTTCTAGCTTTTCATG+TGG | - | chr6.4:59565735-59565754 | MS.gene49949:CDS | 35.0% |
| AAGTGGTCTCTTAGGAATTC+AGG | - | chr6.4:59564260-59564279 | MS.gene49949:CDS | 40.0% | |
| AATGGAGAAGGATAAGAACC+TGG | + | chr6.4:59566017-59566036 | None:intergenic | 40.0% | |
| ACATGACGCATCATCATCTA+TGG | + | chr6.4:59563603-59563622 | None:intergenic | 40.0% | |
| AGAAATCTTTGGCAATAGCG+AGG | - | chr6.4:59565063-59565082 | MS.gene49949:CDS | 40.0% | |
| AGTTGCACACTGCTCAAAAA+AGG | + | chr6.4:59564913-59564932 | None:intergenic | 40.0% | |
| ATCCTTGATGAATTAGGTCG+GGG | - | chr6.4:59566532-59566551 | MS.gene49949:intron | 40.0% | |
| ATGGAACAAAGTGGTCTCTT+AGG | - | chr6.4:59564252-59564271 | MS.gene49949:CDS | 40.0% | |
| ATGGAGAAGGATAAGAACCT+GGG | + | chr6.4:59566016-59566035 | None:intergenic | 40.0% | |
| CAACCCTTATAAACCTGGTA+TGG | + | chr6.4:59565010-59565029 | None:intergenic | 40.0% | |
| CACGCAAATTAGCTAACAGT+AGG | + | chr6.4:59563727-59563746 | None:intergenic | 40.0% | |
| GAAAGAACACAATTCTCGCA+CGG | + | chr6.4:59566192-59566211 | None:intergenic | 40.0% | |
| GAAATCACGTTATCTGCTCT+TGG | - | chr6.4:59564833-59564852 | MS.gene49949:CDS | 40.0% | |
| GAGCAGATAACGTGATTTCA+CGG | + | chr6.4:59564832-59564851 | None:intergenic | 40.0% | |
| GATAAATGTCCCCATTCTGA+AGG | + | chr6.4:59564988-59565007 | None:intergenic | 40.0% | |
| GATTTCACGGTGAATCACTT+TGG | + | chr6.4:59564819-59564838 | None:intergenic | 40.0% | |
| GCTTAGGTATCTCTGATGAA+AGG | - | chr6.4:59566053-59566072 | MS.gene49949:intron | 40.0% | |
| GTAAACTGCATGAGTACACA+AGG | + | chr6.4:59566397-59566416 | None:intergenic | 40.0% | |
| GTTCTATACTTACCATGAGG+TGG | - | chr6.4:59566668-59566687 | MS.gene49949:intron | 40.0% | |
| TACCCTTTCCAAACAAGATC+AGG | - | chr6.4:59566920-59566939 | MS.gene49949:intron | 40.0% | |
| TACCTGTCTGGCTGTTATTA+TGG | - | chr6.4:59565990-59566009 | MS.gene49949:CDS | 40.0% | |
| TAGATGAGGTCCTTCAGAAT+GGG | - | chr6.4:59564975-59564994 | MS.gene49949:CDS | 40.0% | |
| TCCAGATATCATAGAGATGC+AGG | + | chr6.4:59564225-59564244 | None:intergenic | 40.0% | |
| TCCTGCATCTCTATGATATC+TGG | - | chr6.4:59564221-59564240 | MS.gene49949:intron | 40.0% | |
| TCTTCGTAAGCTTCCAGATT+TGG | - | chr6.4:59565363-59565382 | MS.gene49949:CDS | 40.0% | |
| TGCAAATTCTTGTTAGCGGA+TGG | + | chr6.4:59566846-59566865 | None:intergenic | 40.0% | |
| TGTCCATTGAAAGATGCTGA+AGG | - | chr6.4:59565268-59565287 | MS.gene49949:intron | 40.0% | |
| TTTCAGGGGAAGCTATTAGA+TGG | + | chr6.4:59565321-59565340 | None:intergenic | 40.0% | |
| ! | AATCCCTTCATTTTGAGCAC+AGG | + | chr6.4:59565826-59565845 | None:intergenic | 40.0% |
| ! | AGGGTTTGATACTTTTAGGC+TGG | + | chr6.4:59565413-59565432 | None:intergenic | 40.0% |
| ! | CACTTCAATTGACTCCTATG+CGG | - | chr6.4:59564699-59564718 | MS.gene49949:intron | 40.0% |
| ! | CGTCAGAGGCATATTATAAG+AGG | + | chr6.4:59566145-59566164 | None:intergenic | 40.0% |
| ! | GCGTGTGTGAATGCAATTTT+AGG | - | chr6.4:59563742-59563761 | MS.gene49949:CDS | 40.0% |
| ! | GTTCCTGATCTTGTTTGGAA+AGG | + | chr6.4:59566926-59566945 | None:intergenic | 40.0% |
| ! | TGATACTTTTAGGCTGGACT+TGG | + | chr6.4:59565407-59565426 | None:intergenic | 40.0% |
| !! | AGGAGTCAATTGAAGTGTTG+TGG | + | chr6.4:59564696-59564715 | None:intergenic | 40.0% |
| !! | GTGTTACTTCATCTGGAAAG+CGG | - | chr6.4:59565224-59565243 | MS.gene49949:CDS | 40.0% |
| !! | TTTGTTTCTGTTCCACTTGC+AGG | - | chr6.4:59564668-59564687 | MS.gene49949:intron | 40.0% |
| AAGGGTTGCCTCAAAATGGA+TGG | - | chr6.4:59565022-59565041 | MS.gene49949:intron | 45.0% | |
| ACCAACAAGGGCAGTAAGAT+AGG | + | chr6.4:59565433-59565452 | None:intergenic | 45.0% | |
| ACGTTGGCACTAACTATGAC+AGG | + | chr6.4:59565774-59565793 | None:intergenic | 45.0% | |
| AGATGAGGTCCTTCAGAATG+GGG | - | chr6.4:59564976-59564995 | MS.gene49949:CDS | 45.0% | |
| AGCACCTGTGCTCAAAATGA+AGG | - | chr6.4:59565819-59565838 | MS.gene49949:CDS | 45.0% | |
| ATCACGTTATCTGCTCTTGG+TGG | - | chr6.4:59564836-59564855 | MS.gene49949:CDS | 45.0% | |
| ATCTTTGGCAATAGCGAGGA+TGG | - | chr6.4:59565067-59565086 | MS.gene49949:CDS | 45.0% | |
| ATGATCCTTGGCGAGAATGA+AGG | - | chr6.4:59565898-59565917 | MS.gene49949:intron | 45.0% | |
| ATGCGTCATGTTCTGCTTTG+GGG | - | chr6.4:59563612-59563631 | MS.gene49949:CDS | 45.0% | |
| CCAACAAGGGCAGTAAGATA+GGG | + | chr6.4:59565432-59565451 | None:intergenic | 45.0% | |
| CCACGTTACAATGCAACACA+TGG | - | chr6.4:59566872-59566891 | MS.gene49949:intron | 45.0% | |
| CCATGTGTTGCATTGTAACG+TGG | + | chr6.4:59566875-59566894 | None:intergenic | 45.0% | |
| CTAGATGAGGTCCTTCAGAA+TGG | - | chr6.4:59564974-59564993 | MS.gene49949:CDS | 45.0% | |
| GATATCATCTTCACACGCCT+TGG | - | chr6.4:59566219-59566238 | MS.gene49949:intron | 45.0% | |
| GATGCGTCATGTTCTGCTTT+GGG | - | chr6.4:59563611-59563630 | MS.gene49949:CDS | 45.0% | |
| GCACCTGTGCTCAAAATGAA+GGG | - | chr6.4:59565820-59565839 | MS.gene49949:CDS | 45.0% | |
| GTCTGTTCTGCTTGTGTTTC+AGG | - | chr6.4:59565175-59565194 | MS.gene49949:CDS | 45.0% | |
| TCGCCAAGGATCATGTCATT+TGG | + | chr6.4:59565892-59565911 | None:intergenic | 45.0% | |
| TGAGGCAACCCTTATAAACC+TGG | + | chr6.4:59565015-59565034 | None:intergenic | 45.0% | |
| TGATGCGTCATGTTCTGCTT+TGG | - | chr6.4:59563610-59563629 | MS.gene49949:CDS | 45.0% | |
| TGATTCTATCTGTGGCTCCA+AGG | + | chr6.4:59566239-59566258 | None:intergenic | 45.0% | |
| TGGAGCCACAGATAGAATCA+TGG | - | chr6.4:59566239-59566258 | MS.gene49949:intron | 45.0% | |
| TGGGGACATTTATCCATACC+AGG | - | chr6.4:59564994-59565013 | MS.gene49949:intron | 45.0% | |
| TTACGGCATCCATTTGCTCT+TGG | - | chr6.4:59565844-59565863 | MS.gene49949:intron | 45.0% | |
| TTCCCCGACCTAATTCATCA+AGG | + | chr6.4:59566537-59566556 | None:intergenic | 45.0% | |
| TTCTCAGTATGTCCACCTCA+TGG | + | chr6.4:59566683-59566702 | None:intergenic | 45.0% | |
| ! | AGGTTGGACCATCCATTTTG+AGG | + | chr6.4:59565033-59565052 | None:intergenic | 45.0% |
| !! | CTTTTAGGCTGGACTTGGTT+CGG | + | chr6.4:59565402-59565421 | None:intergenic | 45.0% |
| !! | GCAATTTTAGGTGTCACCCA+AGG | - | chr6.4:59563754-59563773 | MS.gene49949:CDS | 45.0% |
| !! | GCTGATTTTCCACCCATGTT+TGG | + | chr6.4:59565958-59565977 | None:intergenic | 45.0% |
| !! | TAAATTTAAAAAAACATAAT+CGG | - | chr6.4:59564636-59564655 | MS.gene49949:intron | 5.0% |
| AAGTCAGTGATCGACCGCAT+AGG | + | chr6.4:59564716-59564735 | None:intergenic | 50.0% | |
| AGCTCAATACAAGCTGCACG+TGG | - | chr6.4:59564474-59564493 | MS.gene49949:intron | 50.0% | |
| AGTGTTGTGGAACCTGCAAG+TGG | + | chr6.4:59564683-59564702 | None:intergenic | 50.0% | |
| ATCCTTGGCGAGAATGAAGG+CGG | - | chr6.4:59565901-59565920 | MS.gene49949:intron | 50.0% | |
| CATCTGGAAAGCGGCTTCTT+AGG | - | chr6.4:59565233-59565252 | MS.gene49949:CDS | 50.0% | |
| CCAGTCTCACCAAGAGCAAA+TGG | + | chr6.4:59565856-59565875 | None:intergenic | 50.0% | |
| CCATTTGCTCTTGGTGAGAC+TGG | - | chr6.4:59565853-59565872 | MS.gene49949:intron | 50.0% | |
| CCCTATCTTACTGCCCTTGT+TGG | - | chr6.4:59565429-59565448 | MS.gene49949:CDS | 50.0% | |
| CGGATTGCAGGTTGCACTTA+TGG | - | chr6.4:59566992-59567011 | MS.gene49949:intron | 50.0% | |
| CTTCTGACAGGGCCAAACAT+GGG | - | chr6.4:59565943-59565962 | MS.gene49949:CDS | 50.0% | |
| GAAAGCGGCTTCTTAGGAAC+TGG | - | chr6.4:59565239-59565258 | MS.gene49949:CDS | 50.0% | |
| GCCACAGATAGAATCATGGC+AGG | - | chr6.4:59566243-59566262 | MS.gene49949:intron | 50.0% | |
| GCCTGCCATGATTCTATCTG+TGG | + | chr6.4:59566247-59566266 | None:intergenic | 50.0% | |
| GGCCATAATAACAGCCAGAC+AGG | + | chr6.4:59565995-59566014 | None:intergenic | 50.0% | |
| TCTGGCTGTTATTATGGCCC+AGG | - | chr6.4:59565996-59566015 | MS.gene49949:CDS | 50.0% | |
| TGCGTCATGTTCTGCTTTGG+GGG | - | chr6.4:59563613-59563632 | MS.gene49949:CDS | 50.0% | |
| TTGCAGGTTGCACTTATGGC+TGG | - | chr6.4:59566996-59567015 | MS.gene49949:intron | 50.0% | |
| TTTGGCAATAGCGAGGATGG+TGG | - | chr6.4:59565070-59565089 | MS.gene49949:CDS | 50.0% | |
| ! | ACTTTTGCGTGCTACCTGTC+TGG | - | chr6.4:59565978-59565997 | MS.gene49949:CDS | 50.0% |
| ! | CGGGGAACAAGCACTTTTGA+TGG | - | chr6.4:59566550-59566569 | MS.gene49949:intron | 50.0% |
| ! | TATGCGGTCGATCACTGACT+TGG | - | chr6.4:59564715-59564734 | MS.gene49949:intron | 50.0% |
| !! | TCTGCTCTTGGTGGACTGAT+AGG | - | chr6.4:59564845-59564864 | MS.gene49949:CDS | 50.0% |
| ACCTGCAATCCGTAGCTCTC+CGG | + | chr6.4:59566984-59567003 | None:intergenic | 55.0% | |
| CCTAACTGCAGAGACGTCAG+AGG | + | chr6.4:59566159-59566178 | None:intergenic | 55.0% | |
| CCTCTGACGTCTCTGCAGTT+AGG | - | chr6.4:59566156-59566175 | MS.gene49949:intron | 55.0% | |
| CTCGCACGATGCTTCTGACA+GGG | - | chr6.4:59565932-59565951 | MS.gene49949:intron | 55.0% | |
| GCTTCTGACAGGGCCAAACA+TGG | - | chr6.4:59565942-59565961 | MS.gene49949:CDS | 55.0% | |
| TCCTTGGCGAGAATGAAGGC+GGG | - | chr6.4:59565902-59565921 | MS.gene49949:intron | 55.0% | |
| !! | AGCGAGGATGGTGGAAAAGC+AGG | - | chr6.4:59565079-59565098 | MS.gene49949:CDS | 55.0% |
| !! | TTCCTATACCGGCTTGCCTC+TGG | - | chr6.4:59566951-59566970 | MS.gene49949:intron | 55.0% |
| CCTCGCACGATGCTTCTGAC+AGG | - | chr6.4:59565931-59565950 | MS.gene49949:intron | 60.0% | |
| CTCCAGAGGCAAGCCGGTAT+AGG | + | chr6.4:59566956-59566975 | None:intergenic | 60.0% | |
| CTGACAGGGCCAAACATGGG+TGG | - | chr6.4:59565946-59565965 | MS.gene49949:CDS | 60.0% | |
| GACATGCTCCAGAGGCAAGC+CGG | + | chr6.4:59566962-59566981 | None:intergenic | 60.0% | |
| GGAGCATGTCCGGAGAGCTA+CGG | - | chr6.4:59566972-59566991 | MS.gene49949:intron | 60.0% | |
| ! | TCCGGAGAGCTACGGATTGC+AGG | - | chr6.4:59566980-59566999 | MS.gene49949:intron | 60.0% |
| !! | CCTGTCAGAAGCATCGTGCG+AGG | + | chr6.4:59565934-59565953 | None:intergenic | 60.0% |
| !! | GCTTGCCTCTGGAGCATGTC+CGG | - | chr6.4:59566962-59566981 | MS.gene49949:intron | 60.0% |
| GCCCGCCTTCATTCTCGCCA+AGG | + | chr6.4:59565906-59565925 | None:intergenic | 65.0% | |
| GCTCTCCGGACATGCTCCAG+AGG | + | chr6.4:59566970-59566989 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 59563572 | 59567250 | 59563572 | ID=MS.gene49949 |
| chr6.4 | mRNA | 59563572 | 59567250 | 59563572 | ID=MS.gene49949.t1;Parent=MS.gene49949 |
| chr6.4 | exon | 59567173 | 59567250 | 59567173 | ID=MS.gene49949.t1.exon1;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59567173 | 59567250 | 59567173 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59567025 | 59567058 | 59567025 | ID=MS.gene49949.t1.exon2;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59567025 | 59567058 | 59567025 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59566880 | 59566927 | 59566880 | ID=MS.gene49949.t1.exon3;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59566880 | 59566927 | 59566880 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59566070 | 59566132 | 59566070 | ID=MS.gene49949.t1.exon4;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59566070 | 59566132 | 59566070 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59565936 | 59566018 | 59565936 | ID=MS.gene49949.t1.exon5;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59565936 | 59566018 | 59565936 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59565722 | 59565848 | 59565722 | ID=MS.gene49949.t1.exon6;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59565722 | 59565848 | 59565722 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59565324 | 59565625 | 59565324 | ID=MS.gene49949.t1.exon7;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59565324 | 59565625 | 59565324 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59565039 | 59565285 | 59565039 | ID=MS.gene49949.t1.exon8;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59565039 | 59565285 | 59565039 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59564805 | 59565001 | 59564805 | ID=MS.gene49949.t1.exon9;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59564805 | 59565001 | 59564805 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59564552 | 59564648 | 59564552 | ID=MS.gene49949.t1.exon10;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59564552 | 59564648 | 59564552 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59564231 | 59564358 | 59564231 | ID=MS.gene49949.t1.exon11;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59564231 | 59564358 | 59564231 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| chr6.4 | exon | 59563572 | 59563913 | 59563572 | ID=MS.gene49949.t1.exon12;Parent=MS.gene49949.t1 |
| chr6.4 | CDS | 59563572 | 59563913 | 59563572 | ID=cds.MS.gene49949.t1;Parent=MS.gene49949.t1 |
| Gene Sequence |
| Protein sequence |
