Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49974.t1 | XP_024626385.1 | 100 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 4.00E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49974.t1 | O70333 | 67.3 | 101 | 28 | 3 | 1 | 96 | 1 | 101 | 2.1e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49974.t1 | A0A396K208 | 100.0 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 2.8e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051975 | MS.gene49974 | 0.812818 | 3.50E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene49974 | 0.810317 | 1.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49974.t1 | AT1G61780 | 88.776 | 98 | 9 | 1 | 1 | 96 | 1 | 98 | 7.45e-60 | 178 |
Find 21 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGGAACCTGTTCTTCT+TGG | 0.284589 | 1.1:-75449539 | None:intergenic |
| GCACCTTCTTTCCATTTGTC+TGG | 0.356085 | 1.1:-75449463 | None:intergenic |
| AACTCCTTTCCAAGAAGAAC+AGG | 0.405714 | 1.1:+75449530 | MS.gene49974:CDS |
| CCTTGCAGATGGACCCCTTA+CGG | 0.442126 | 1.1:+75452176 | MS.gene49974:intron |
| ATTGCTTTGTTTATAAAACT+TGG | 0.455004 | 1.1:-75452402 | None:intergenic |
| AGGTGATAGTACCAGACAAA+TGG | 0.467879 | 1.1:+75449452 | MS.gene49974:CDS |
| CACACGTGTGCTTACTCAAA+AGG | 0.468563 | 1.1:+75452254 | MS.gene49974:CDS |
| TGCACTTAGTTGTTCCGTAA+GGG | 0.517165 | 1.1:-75452190 | None:intergenic |
| TTGCAAGCAGCAAGTGCACC+AGG | 0.519611 | 1.1:+75452217 | MS.gene49974:CDS |
| ATGCACTTAGTTGTTCCGTA+AGG | 0.525449 | 1.1:-75452191 | None:intergenic |
| GGAACCTGTTCTTCTTGGAA+AGG | 0.539127 | 1.1:-75449534 | None:intergenic |
| TGTGACAGTACTTGCCATCC+TGG | 0.544753 | 1.1:-75452235 | None:intergenic |
| GCACTTAGTTGTTCCGTAAG+GGG | 0.546613 | 1.1:-75452189 | None:intergenic |
| ATAAACAAAGCAATGTGTAG+TGG | 0.551489 | 1.1:+75452411 | MS.gene49974:CDS |
| GTACCAGACAAATGGAAAGA+AGG | 0.553949 | 1.1:+75449460 | MS.gene49974:CDS |
| AGGTCAGAAGAAATTATCGA+AGG | 0.591221 | 1.1:+75449432 | MS.gene49974:intron |
| GGTGCAAGCAATACTACTGA+AGG | 0.608421 | 1.1:+75449481 | MS.gene49974:CDS |
| GCAGGGGTCTGTGCGATGTG+TGG | 0.611108 | 1.1:+75452362 | MS.gene49974:intron |
| AGCAATACTACTGAAGGCGG+TGG | 0.615667 | 1.1:+75449487 | MS.gene49974:CDS |
| AAGCAGCAAGTGCACCAGGA+TGG | 0.627659 | 1.1:+75452221 | MS.gene49974:CDS |
| GCAAGCAATACTACTGAAGG+CGG | 0.661649 | 1.1:+75449484 | MS.gene49974:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAAATTAACAATTATTT+TGG | - | chr1.1:75450478-75450497 | None:intergenic | 10.0% |
| !! | AAAAACAAATAAGAAATTGA+AGG | - | chr1.1:75449573-75449592 | None:intergenic | 15.0% |
| !! | AAAAAGAAAACTTAAAAGTT+TGG | - | chr1.1:75451699-75451718 | None:intergenic | 15.0% |
| !! | AAAACAAATAAGAAATTGAA+GGG | - | chr1.1:75449572-75449591 | None:intergenic | 15.0% |
| !! | AAAAGAAAACTTAAAAGTTT+GGG | - | chr1.1:75451698-75451717 | None:intergenic | 15.0% |
| !! | AACAAGTTACAATATAAAAA+AGG | - | chr1.1:75452098-75452117 | None:intergenic | 15.0% |
| !! | TAAACAATTACAAAAAGTAA+TGG | - | chr1.1:75452020-75452039 | None:intergenic | 15.0% |
| !!! | ATATTCTTTGATTTCTTTTT+TGG | + | chr1.1:75451375-75451394 | MS.gene49974:intron | 15.0% |
| !! | AAATATTTGACATGTGAAAT+TGG | - | chr1.1:75450687-75450706 | None:intergenic | 20.0% |
| !! | AACTAAGAAACAAATTATGA+AGG | - | chr1.1:75449601-75449620 | None:intergenic | 20.0% |
| !! | AACTAGAAAATTACAGAATA+TGG | - | chr1.1:75450523-75450542 | None:intergenic | 20.0% |
| !! | AATGACTATTAGTATTAGTA+TGG | + | chr1.1:75451892-75451911 | MS.gene49974:intron | 20.0% |
| !! | AATTGTTAATTTCAATAGCT+GGG | + | chr1.1:75450482-75450501 | MS.gene49974:intron | 20.0% |
| !! | ACTAGAAAATTACAGAATAT+GGG | - | chr1.1:75450522-75450541 | None:intergenic | 20.0% |
| !! | ACTAGAAATATTGAAGAAAA+AGG | - | chr1.1:75449365-75449384 | None:intergenic | 20.0% |
| !! | CAAAGTCTATTTATTTGTTT+AGG | - | chr1.1:75449849-75449868 | None:intergenic | 20.0% |
| !! | TAATTGTTAATTTCAATAGC+TGG | + | chr1.1:75450481-75450500 | MS.gene49974:intron | 20.0% |
| !! | TCTATCATTTACTTTGAATT+CGG | - | chr1.1:75450748-75450767 | None:intergenic | 20.0% |
| !!! | AATGTTATTTTTCTTTCAGA+TGG | - | chr1.1:75451001-75451020 | None:intergenic | 20.0% |
| !!! | ATTGCTTTGTTTATAAAACT+TGG | - | chr1.1:75452405-75452424 | None:intergenic | 20.0% |
| !!! | GAAAATTCAATTGATCTTTT+TGG | + | chr1.1:75449389-75449408 | MS.gene49974:intron | 20.0% |
| !!! | TTGTTTCTTAGTTTTTAAGT+AGG | + | chr1.1:75449608-75449627 | MS.gene49974:intron | 20.0% |
| !!! | TTTAAACTTACTCTTTTGTA+GGG | + | chr1.1:75449986-75450005 | MS.gene49974:intron | 20.0% |
| ! | AAAAAAAAACTGAATTGTCG+AGG | - | chr1.1:75451669-75451688 | None:intergenic | 25.0% |
| ! | AAAAAAAACTGAATTGTCGA+GGG | - | chr1.1:75451668-75451687 | None:intergenic | 25.0% |
| ! | AATAAGAAATTGAAGGGTTT+AGG | - | chr1.1:75449566-75449585 | None:intergenic | 25.0% |
| ! | AATTGGAAATAGATAACACT+AGG | + | chr1.1:75450165-75450184 | MS.gene49974:intron | 25.0% |
| ! | ACAAATTCATACAAAGTTTG+AGG | + | chr1.1:75450597-75450616 | MS.gene49974:intron | 25.0% |
| ! | ACTAAGTTCAAATGGAAAAT+TGG | + | chr1.1:75450148-75450167 | MS.gene49974:intron | 25.0% |
| ! | ATAGATACAATGAATTCACT+AGG | + | chr1.1:75451060-75451079 | MS.gene49974:intron | 25.0% |
| ! | ATGGAAAAACTAAGTTCAAA+TGG | + | chr1.1:75450140-75450159 | MS.gene49974:intron | 25.0% |
| ! | ATTAGAAAACCATTTACCAA+TGG | + | chr1.1:75450832-75450851 | MS.gene49974:intron | 25.0% |
| ! | CTAGAAAATTACAGAATATG+GGG | - | chr1.1:75450521-75450540 | None:intergenic | 25.0% |
| ! | CTATCATTTACTTTGAATTC+GGG | - | chr1.1:75450747-75450766 | None:intergenic | 25.0% |
| ! | GTCATTTAAACAAAAGATCA+AGG | - | chr1.1:75452065-75452084 | None:intergenic | 25.0% |
| ! | TATTGACAATGGAATTGATA+AGG | + | chr1.1:75450017-75450036 | MS.gene49974:intron | 25.0% |
| ! | TCAAAGTAAAGTCAACAAAT+TGG | - | chr1.1:75451323-75451342 | None:intergenic | 25.0% |
| ! | TTGACTTTACTTTGATGAAT+TGG | + | chr1.1:75451328-75451347 | MS.gene49974:intron | 25.0% |
| ! | TTTAATTAATTCCTTGCAGA+TGG | + | chr1.1:75452165-75452184 | MS.gene49974:intron | 25.0% |
| ! | TTTCAATAGTAGGTTTGATA+TGG | + | chr1.1:75451408-75451427 | MS.gene49974:intron | 25.0% |
| !! | ATATCTTTGGTGTATATATG+TGG | + | chr1.1:75451780-75451799 | MS.gene49974:intron | 25.0% |
| !! | CTTTAAACTTACTCTTTTGT+AGG | + | chr1.1:75449985-75450004 | MS.gene49974:intron | 25.0% |
| !! | GAAAGAAACCTAATGTTTTT+AGG | + | chr1.1:75451451-75451470 | MS.gene49974:intron | 25.0% |
| !! | GGTAAATGGTTTTCTAATTT+TGG | - | chr1.1:75450830-75450849 | None:intergenic | 25.0% |
| !! | TAATTTTGGATTTCAGTTCA+TGG | - | chr1.1:75450816-75450835 | None:intergenic | 25.0% |
| !! | TACTTCAAATTTGAGATACT+TGG | + | chr1.1:75449742-75449761 | MS.gene49974:intron | 25.0% |
| !!! | AGCTTTATTCCTTGAATTAT+TGG | + | chr1.1:75451268-75451287 | MS.gene49974:intron | 25.0% |
| !!! | CAAATATTTTTGAGAAAGCA+TGG | + | chr1.1:75450698-75450717 | MS.gene49974:intron | 25.0% |
| !!! | CAATTATTTTGGTACTTTGA+TGG | - | chr1.1:75450467-75450486 | None:intergenic | 25.0% |
| !!! | TCTGTAATTTTCTAGTTTAG+TGG | + | chr1.1:75450526-75450545 | MS.gene49974:intron | 25.0% |
| AAACTAGTAAGTAGCAATCA+TGG | - | chr1.1:75450788-75450807 | None:intergenic | 30.0% | |
| AAAGTCAACAAATTGGTTAG+AGG | - | chr1.1:75451316-75451335 | None:intergenic | 30.0% | |
| AACTACCACCTAAAAACATT+AGG | - | chr1.1:75451462-75451481 | None:intergenic | 30.0% | |
| AGTTAATTGGCATATAGCTT+GGG | - | chr1.1:75450416-75450435 | None:intergenic | 30.0% | |
| ATAAGTGCAGAACTAGTAAA+TGG | - | chr1.1:75451862-75451881 | None:intergenic | 30.0% | |
| ATGACTATCATGCAGTTAAT+TGG | - | chr1.1:75450429-75450448 | None:intergenic | 30.0% | |
| CTGTTCTTGGAAAATATCTT+TGG | + | chr1.1:75451767-75451786 | MS.gene49974:intron | 30.0% | |
| GAAAGTCATTTCTCAAACTA+AGG | - | chr1.1:75450927-75450946 | None:intergenic | 30.0% | |
| GTGAGAATGAGAAAGATATA+AGG | - | chr1.1:75450949-75450968 | None:intergenic | 30.0% | |
| GTTATATACAGTGAATCACT+AGG | + | chr1.1:75450095-75450114 | MS.gene49974:intron | 30.0% | |
| TCGTAGTTGTATTGTTTCAT+TGG | - | chr1.1:75450067-75450086 | None:intergenic | 30.0% | |
| TCTCTGAACCTTCTATAAAA+GGG | - | chr1.1:75451238-75451257 | None:intergenic | 30.0% | |
| TCTGAACAAATAACATGAAC+AGG | - | chr1.1:75451990-75452009 | None:intergenic | 30.0% | |
| TGAACAAGTGAATCAAATGT+TGG | + | chr1.1:75451521-75451540 | MS.gene49974:intron | 30.0% | |
| TGAATTGGCAATTTCTCTAT+TGG | + | chr1.1:75451343-75451362 | MS.gene49974:intron | 30.0% | |
| ! | AGTTTTTCCATTCAACGAAT+TGG | - | chr1.1:75450131-75450150 | None:intergenic | 30.0% |
| ! | GATTTTAAATGGAGAGGTAA+TGG | - | chr1.1:75450268-75450287 | None:intergenic | 30.0% |
| ! | TGATTTGAATTCGTGGTTTT+AGG | + | chr1.1:75449412-75449431 | MS.gene49974:intron | 30.0% |
| !! | AAGGTTGATTTTAAATGGAG+AGG | - | chr1.1:75450274-75450293 | None:intergenic | 30.0% |
| !! | AGGACAAGGTTGATTTTAAA+TGG | - | chr1.1:75450279-75450298 | None:intergenic | 30.0% |
| !! | GATTAGTAGCTTTAACTTTC+CGG | + | chr1.1:75450882-75450901 | MS.gene49974:intron | 30.0% |
| !! | TTTTTGGTGATTTGAATTCG+TGG | + | chr1.1:75449405-75449424 | MS.gene49974:intron | 30.0% |
| !!! | AGAAACCTAATGTTTTTAGG+TGG | + | chr1.1:75451454-75451473 | MS.gene49974:intron | 30.0% |
| !!! | AGCAATGCTTTTTCAATAGT+AGG | + | chr1.1:75451398-75451417 | MS.gene49974:intron | 30.0% |
| !!! | ATTTTGATTGACACTGTTCT+TGG | + | chr1.1:75451754-75451773 | MS.gene49974:intron | 30.0% |
| !!! | CATTCTCACATTTTAACTTG+AGG | + | chr1.1:75450960-75450979 | MS.gene49974:intron | 30.0% |
| AAAACCATTTACCAATGGCA+AGG | + | chr1.1:75450837-75450856 | MS.gene49974:intron | 35.0% | |
| AGGGGTAATAAAAATTTCCC+TGG | + | chr1.1:75450307-75450326 | MS.gene49974:intron | 35.0% | |
| AGGTCAGAAGAAATTATCGA+AGG | + | chr1.1:75449432-75449451 | MS.gene49974:intron | 35.0% | |
| AGGTTTGATATGGTACTGTA+TGG | + | chr1.1:75451418-75451437 | MS.gene49974:intron | 35.0% | |
| CAACAAATTGGTTAGAGGAA+AGG | - | chr1.1:75451311-75451330 | None:intergenic | 35.0% | |
| CAGTTAATTGGCATATAGCT+TGG | - | chr1.1:75450417-75450436 | None:intergenic | 35.0% | |
| CTCTCTGAACCTTCTATAAA+AGG | - | chr1.1:75451239-75451258 | None:intergenic | 35.0% | |
| GACATGTGAAATTGGAACAT+GGG | - | chr1.1:75450679-75450698 | None:intergenic | 35.0% | |
| GGGTTCGAAAATATTGACAA+TGG | + | chr1.1:75450006-75450025 | MS.gene49974:intron | 35.0% | |
| GTACATAACTCAATTCCTGA+TGG | + | chr1.1:75452329-75452348 | MS.gene49974:intron | 35.0% | |
| TAATACAGTAGTGAACCCAA+GGG | + | chr1.1:75451159-75451178 | MS.gene49974:intron | 35.0% | |
| TATACAGTGAATCACTAGGA+TGG | + | chr1.1:75450099-75450118 | MS.gene49974:intron | 35.0% | |
| TCAGCTGATCCAATAATTCA+AGG | - | chr1.1:75451280-75451299 | None:intergenic | 35.0% | |
| TCATTTACTTTGAATTCGGG+AGG | - | chr1.1:75450744-75450763 | None:intergenic | 35.0% | |
| TCTCTATCACCATTTGTACT+TGG | - | chr1.1:75451117-75451136 | None:intergenic | 35.0% | |
| TGACATGTGAAATTGGAACA+TGG | - | chr1.1:75450680-75450699 | None:intergenic | 35.0% | |
| TTCAGCCCTTACAATACAAA+TGG | - | chr1.1:75450339-75450358 | None:intergenic | 35.0% | |
| TTTATTACCCCTTGTCAAGT+AGG | - | chr1.1:75450299-75450318 | None:intergenic | 35.0% | |
| TTTGTATGCTGCAGTTTAGA+AGG | + | chr1.1:75449872-75449891 | MS.gene49974:intron | 35.0% | |
| ! | GCATATTTGGTCTCTGTTTT+GGG | + | chr1.1:75449901-75449920 | MS.gene49974:intron | 35.0% |
| ! | TCATTGCTCCCTTTTATAGA+AGG | + | chr1.1:75451227-75451246 | MS.gene49974:intron | 35.0% |
| ! | TGCATATTTGGTCTCTGTTT+TGG | + | chr1.1:75449900-75449919 | MS.gene49974:intron | 35.0% |
| ! | TGGCTTGACATTTTCTCTAT+TGG | + | chr1.1:75450235-75450254 | MS.gene49974:intron | 35.0% |
| !! | ATTGAAGGGTTTAGGTTGAA+AGG | - | chr1.1:75449558-75449577 | None:intergenic | 35.0% |
| !! | ATTTTTGAGAAAGCATGGCA+AGG | + | chr1.1:75450703-75450722 | MS.gene49974:intron | 35.0% |
| !! | GTTTAGTGGATTTAGTTGCT+CGG | + | chr1.1:75450540-75450559 | MS.gene49974:intron | 35.0% |
| !! | TAGAAGGTGCTATGCATATT+TGG | + | chr1.1:75449888-75449907 | MS.gene49974:intron | 35.0% |
| !! | TTTAGTGGATTTAGTTGCTC+GGG | + | chr1.1:75450541-75450560 | MS.gene49974:intron | 35.0% |
| !! | TTTTAGGTGGTAGTTAGTGA+TGG | + | chr1.1:75451467-75451486 | MS.gene49974:intron | 35.0% |
| !! | TTTTTGAGAAAGCATGGCAA+GGG | + | chr1.1:75450704-75450723 | MS.gene49974:intron | 35.0% |
| !!! | GTTTGTTCTCGTTGATTTTG+CGG | - | chr1.1:75449513-75449532 | None:intergenic | 35.0% |
| AAAGGGAGCAATGATTGACA+TGG | - | chr1.1:75451221-75451240 | None:intergenic | 40.0% | |
| AAATCCTCTCATTCTCCCTT+GGG | - | chr1.1:75451177-75451196 | None:intergenic | 40.0% | |
| AACATCTCTCCAAACTGTCA+AGG | + | chr1.1:75451918-75451937 | MS.gene49974:intron | 40.0% | |
| AACCCAAAACCTTGACAGTT+TGG | - | chr1.1:75451930-75451949 | None:intergenic | 40.0% | |
| AACCTTGTCCTACTTGACAA+GGG | + | chr1.1:75450288-75450307 | MS.gene49974:intron | 40.0% | |
| AACTCCTTTCCAAGAAGAAC+AGG | + | chr1.1:75449530-75449549 | MS.gene49974:CDS | 40.0% | |
| AAGTGACCATGGTGAAGTTA+TGG | - | chr1.1:75451622-75451641 | None:intergenic | 40.0% | |
| AGCCCACCATTTGTATTGTA+AGG | + | chr1.1:75450330-75450349 | MS.gene49974:intron | 40.0% | |
| AGCCCTTACAATACAAATGG+TGG | - | chr1.1:75450336-75450355 | None:intergenic | 40.0% | |
| AGGTGATAGTACCAGACAAA+TGG | + | chr1.1:75449452-75449471 | MS.gene49974:CDS | 40.0% | |
| AGTGACCATGGTGAAGTTAT+GGG | - | chr1.1:75451621-75451640 | None:intergenic | 40.0% | |
| ATCATGGAACATGCACATGA+TGG | - | chr1.1:75450772-75450791 | None:intergenic | 40.0% | |
| ATGCACTTAGTTGTTCCGTA+AGG | - | chr1.1:75452194-75452213 | None:intergenic | 40.0% | |
| ATGGGAAGACCAAGTACAAA+TGG | + | chr1.1:75451105-75451124 | MS.gene49974:intron | 40.0% | |
| ATTCTCCCATAACTTCACCA+TGG | + | chr1.1:75451613-75451632 | MS.gene49974:intron | 40.0% | |
| ATTGGCATATAGCTTGGGTT+TGG | - | chr1.1:75450411-75450430 | None:intergenic | 40.0% | |
| ATTGTAAGGGCTGAACATGT+GGG | + | chr1.1:75450344-75450363 | MS.gene49974:intron | 40.0% | |
| CCACATGATGCAAAAATGCA+GGG | - | chr1.1:75452133-75452152 | None:intergenic | 40.0% | |
| CTAATACAGTAGTGAACCCA+AGG | + | chr1.1:75451158-75451177 | MS.gene49974:intron | 40.0% | |
| CTTGGGTTTGGAAAAATGCT+AGG | - | chr1.1:75450399-75450418 | None:intergenic | 40.0% | |
| GCAATGATTGACATGGAAAG+TGG | - | chr1.1:75451214-75451233 | None:intergenic | 40.0% | |
| GCCCACCATTTGTATTGTAA+GGG | + | chr1.1:75450331-75450350 | MS.gene49974:intron | 40.0% | |
| GCCCTTACAATACAAATGGT+GGG | - | chr1.1:75450335-75450354 | None:intergenic | 40.0% | |
| GTACCAGACAAATGGAAAGA+AGG | + | chr1.1:75449460-75449479 | MS.gene49974:CDS | 40.0% | |
| TATTGTAAGGGCTGAACATG+TGG | + | chr1.1:75450343-75450362 | MS.gene49974:intron | 40.0% | |
| TCAACGTAGAGTCGACAAAT+TGG | - | chr1.1:75450215-75450234 | None:intergenic | 40.0% | |
| TCCACATGATGCAAAAATGC+AGG | - | chr1.1:75452134-75452153 | None:intergenic | 40.0% | |
| TCTTTCAGATGGATCTGTTG+TGG | - | chr1.1:75450990-75451009 | None:intergenic | 40.0% | |
| TGAAAGGAACCTGTTCTTCT+TGG | - | chr1.1:75449542-75449561 | None:intergenic | 40.0% | |
| TGCACTTAGTTGTTCCGTAA+GGG | - | chr1.1:75452193-75452212 | None:intergenic | 40.0% | |
| TTACTCACAGAATCAAGTGC+TGG | - | chr1.1:75451553-75451572 | None:intergenic | 40.0% | |
| ! | AGGAAACAGTTGAGCTTGTT+AGG | + | chr1.1:75449811-75449830 | MS.gene49974:intron | 40.0% |
| ! | CTACTCATGTTACTTCGTTG+GGG | + | chr1.1:75449773-75449792 | MS.gene49974:intron | 40.0% |
| ! | CTCCAAACTGTCAAGGTTTT+GGG | + | chr1.1:75451925-75451944 | MS.gene49974:intron | 40.0% |
| ! | GCTACTCATGTTACTTCGTT+GGG | + | chr1.1:75449772-75449791 | MS.gene49974:intron | 40.0% |
| ! | GTACTTTGATGGCACATCAT+GGG | - | chr1.1:75450456-75450475 | None:intergenic | 40.0% |
| ! | TCTCCAAACTGTCAAGGTTT+TGG | + | chr1.1:75451924-75451943 | MS.gene49974:intron | 40.0% |
| ! | TGCTACTCATGTTACTTCGT+TGG | + | chr1.1:75449771-75449790 | MS.gene49974:intron | 40.0% |
| !! | ATTTGTCGACTCTACGTTGA+TGG | + | chr1.1:75450215-75450234 | MS.gene49974:intron | 40.0% |
| !! | TAGTAGCTTTAACTTTCCGG+CGG | + | chr1.1:75450885-75450904 | MS.gene49974:intron | 40.0% |
| !! | TTGGCTTTGTACAGAGGATA+TGG | + | chr1.1:75450372-75450391 | MS.gene49974:intron | 40.0% |
| !!! | CTGATGGTTTTGTACTTGCA+GGG | + | chr1.1:75452345-75452364 | MS.gene49974:intron | 40.0% |
| !!! | GGTCTCTGTTTTGGGAATAT+TGG | + | chr1.1:75449909-75449928 | MS.gene49974:intron | 40.0% |
| !!! | TGATGGTTTTGTACTTGCAG+GGG | + | chr1.1:75452346-75452365 | MS.gene49974:intron | 40.0% |
| ACCTTGTCCTACTTGACAAG+GGG | + | chr1.1:75450289-75450308 | MS.gene49974:intron | 45.0% | |
| AGAGCCTTGCCATTGGTAAA+TGG | - | chr1.1:75450844-75450863 | None:intergenic | 45.0% | |
| AGAGTAGCCAATTCGTGGAA+TGG | + | chr1.1:75451086-75451105 | MS.gene49974:intron | 45.0% | |
| CAACCTTGTCCTACTTGACA+AGG | + | chr1.1:75450287-75450306 | MS.gene49974:intron | 45.0% | |
| CACACGTGTGCTTACTCAAA+AGG | + | chr1.1:75452254-75452273 | MS.gene49974:CDS | 45.0% | |
| CCTGCAAGTACAAAACCATC+AGG | - | chr1.1:75452347-75452366 | None:intergenic | 45.0% | |
| GAAATCCTCTCATTCTCCCT+TGG | - | chr1.1:75451178-75451197 | None:intergenic | 45.0% | |
| GAGTAGCCAATTCGTGGAAT+GGG | + | chr1.1:75451087-75451106 | MS.gene49974:intron | 45.0% | |
| GCAAGCAATACTACTGAAGG+CGG | + | chr1.1:75449484-75449503 | MS.gene49974:CDS | 45.0% | |
| GCACCTTCTTTCCATTTGTC+TGG | - | chr1.1:75449466-75449485 | None:intergenic | 45.0% | |
| GCACTTAGTTGTTCCGTAAG+GGG | - | chr1.1:75452192-75452211 | None:intergenic | 45.0% | |
| GGAACCTGTTCTTCTTGGAA+AGG | - | chr1.1:75449537-75449556 | None:intergenic | 45.0% | |
| GGTGCAAGCAATACTACTGA+AGG | + | chr1.1:75449481-75449500 | MS.gene49974:CDS | 45.0% | |
| GTAACGTGAAGAGGGAAACT+GGG | - | chr1.1:75451646-75451665 | None:intergenic | 45.0% | |
| TCGGGATCAAAACAGAAACG+TGG | + | chr1.1:75450559-75450578 | MS.gene49974:intron | 45.0% | |
| TTGTAAGGGCTGAACATGTG+GGG | + | chr1.1:75450345-75450364 | MS.gene49974:intron | 45.0% | |
| ! | AAAGCACCAAACCAAGTACG+AGG | - | chr1.1:75449969-75449988 | None:intergenic | 45.0% |
| ! | CCCTGCATTTTTGCATCATG+TGG | + | chr1.1:75452130-75452149 | MS.gene49974:intron | 45.0% |
| ! | GGTACTTTGATGGCACATCA+TGG | - | chr1.1:75450457-75450476 | None:intergenic | 45.0% |
| !! | AATACAAATGGTGGGCTCCA+GGG | - | chr1.1:75450327-75450346 | None:intergenic | 45.0% |
| !!! | CCTGATGGTTTTGTACTTGC+AGG | + | chr1.1:75452344-75452363 | MS.gene49974:intron | 45.0% |
| AACCTGAAGAGCCTTGCCAT+TGG | - | chr1.1:75450851-75450870 | None:intergenic | 50.0% | |
| ACCAAACCAAGTACGAGGAG+TGG | - | chr1.1:75449964-75449983 | None:intergenic | 50.0% | |
| ACCACTCCTCGTACTTGGTT+TGG | + | chr1.1:75449960-75449979 | MS.gene49974:intron | 50.0% | |
| ACCCCTTGTCAAGTAGGACA+AGG | - | chr1.1:75450293-75450312 | None:intergenic | 50.0% | |
| AGCAATACTACTGAAGGCGG+TGG | + | chr1.1:75449487-75449506 | MS.gene49974:CDS | 50.0% | |
| AGTGGTGACATAATGCGTGC+AGG | - | chr1.1:75449946-75449965 | None:intergenic | 50.0% | |
| ATGTCACCACTCCTCGTACT+TGG | + | chr1.1:75449955-75449974 | MS.gene49974:intron | 50.0% | |
| CACATGTGTGCACATCGCTT+GGG | + | chr1.1:75451819-75451838 | MS.gene49974:intron | 50.0% | |
| GCAGTGGCCAATTCGTTGAA+TGG | + | chr1.1:75450121-75450140 | MS.gene49974:intron | 50.0% | |
| GGAAACTGGGAAAGTGACCA+TGG | - | chr1.1:75451633-75451652 | None:intergenic | 50.0% | |
| GGATGAGAGTAGCCAATTCG+TGG | + | chr1.1:75451081-75451100 | MS.gene49974:intron | 50.0% | |
| GGTAACGTGAAGAGGGAAAC+TGG | - | chr1.1:75451647-75451666 | None:intergenic | 50.0% | |
| GGTCTTCCCATTCCACGAAT+TGG | - | chr1.1:75451096-75451115 | None:intergenic | 50.0% | |
| GTGAATCACTAGGATGGCAG+TGG | + | chr1.1:75450105-75450124 | MS.gene49974:intron | 50.0% | |
| GTGGTGACATAATGCGTGCA+GGG | - | chr1.1:75449945-75449964 | None:intergenic | 50.0% | |
| TACCAATGGCAAGGCTCTTC+AGG | + | chr1.1:75450846-75450865 | MS.gene49974:intron | 50.0% | |
| TCACATGTGTGCACATCGCT+TGG | + | chr1.1:75451818-75451837 | MS.gene49974:intron | 50.0% | |
| TGAACCCAAGGGAGAATGAG+AGG | + | chr1.1:75451170-75451189 | MS.gene49974:intron | 50.0% | |
| TGGGGAGGATCGATGTTCTT+AGG | + | chr1.1:75449791-75449810 | MS.gene49974:intron | 50.0% | |
| TGTCGAGGGTAACGTGAAGA+GGG | - | chr1.1:75451654-75451673 | None:intergenic | 50.0% | |
| TGTGACAGTACTTGCCATCC+TGG | - | chr1.1:75452238-75452257 | None:intergenic | 50.0% | |
| TTGTCGAGGGTAACGTGAAG+AGG | - | chr1.1:75451655-75451674 | None:intergenic | 50.0% | |
| ! | CTCATGTTACTTCGTTGGGG+AGG | + | chr1.1:75449776-75449795 | MS.gene49974:intron | 50.0% |
| !! | CAATACAAATGGTGGGCTCC+AGG | - | chr1.1:75450328-75450347 | None:intergenic | 50.0% |
| AAGCAGCAAGTGCACCAGGA+TGG | + | chr1.1:75452221-75452240 | MS.gene49974:CDS | 55.0% | |
| CCTTGCAGATGGACCCCTTA+CGG | + | chr1.1:75452176-75452195 | MS.gene49974:intron | 55.0% | |
| GAATTCGGGAGGCAGTTTGC+AGG | - | chr1.1:75450733-75450752 | None:intergenic | 55.0% | |
| TAAGGGCTGAACATGTGGGG+AGG | + | chr1.1:75450348-75450367 | MS.gene49974:intron | 55.0% | |
| TTGCAAGCAGCAAGTGCACC+AGG | + | chr1.1:75452217-75452236 | MS.gene49974:CDS | 55.0% | |
| !! | GGAGGCTTGGCTTTGTACAG+AGG | + | chr1.1:75450366-75450385 | MS.gene49974:intron | 55.0% |
| CCGTAAGGGGTCCATCTGCA+AGG | - | chr1.1:75452179-75452198 | None:intergenic | 60.0% | |
| GCTGAACATGTGGGGAGGCT+TGG | + | chr1.1:75450353-75450372 | MS.gene49974:intron | 60.0% | |
| GCAGGGGTCTGTGCGATGTG+TGG | + | chr1.1:75452362-75452381 | MS.gene49974:intron | 65.0% | |
| TCCTACTTGCTCGCGTCCGC+CGG | - | chr1.1:75450904-75450923 | None:intergenic | 65.0% | |
| TCCGGCGGACGCGAGCAAGT+AGG | + | chr1.1:75450900-75450919 | MS.gene49974:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 75449333 | 75452430 | 75449333 | ID=MS.gene49974 |
| chr1.1 | mRNA | 75449333 | 75452430 | 75449333 | ID=MS.gene49974.t1;Parent=MS.gene49974 |
| chr1.1 | exon | 75449333 | 75449348 | 75449333 | ID=MS.gene49974.t1.exon1;Parent=MS.gene49974.t1 |
| chr1.1 | CDS | 75449333 | 75449348 | 75449333 | ID=cds.MS.gene49974.t1;Parent=MS.gene49974.t1 |
| chr1.1 | exon | 75449434 | 75449551 | 75449434 | ID=MS.gene49974.t1.exon2;Parent=MS.gene49974.t1 |
| chr1.1 | CDS | 75449434 | 75449551 | 75449434 | ID=cds.MS.gene49974.t1;Parent=MS.gene49974.t1 |
| chr1.1 | exon | 75452184 | 75452275 | 75452184 | ID=MS.gene49974.t1.exon3;Parent=MS.gene49974.t1 |
| chr1.1 | CDS | 75452184 | 75452275 | 75452184 | ID=cds.MS.gene49974.t1;Parent=MS.gene49974.t1 |
| chr1.1 | exon | 75452366 | 75452430 | 75452366 | ID=MS.gene49974.t1.exon4;Parent=MS.gene49974.t1 |
| chr1.1 | CDS | 75452366 | 75452430 | 75452366 | ID=cds.MS.gene49974.t1;Parent=MS.gene49974.t1 |
| Gene Sequence |
| Protein sequence |
