AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051975


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051975.t1 MTR_2g099500 99.600 250 1 0 1 250 1 250 0.0 514
MS.gene051975.t1 MTR_8g019520 80.081 246 48 1 6 250 10 255 1.42e-123 352
MS.gene051975.t1 MTR_8g019520 79.757 247 48 2 6 250 10 256 5.34e-122 348
MS.gene051975.t1 MTR_2g040990 72.177 248 58 5 6 250 13 252 1.43e-113 326
MS.gene051975.t1 MTR_4g134510 67.857 252 76 1 1 247 1 252 1.74e-111 321
MS.gene051975.t1 MTR_1g015185 68.775 253 70 3 6 250 11 262 2.56e-108 313
MS.gene051975.t1 MTR_4g015830 62.000 250 82 6 1 250 3 239 4.15e-92 271
MS.gene051975.t1 MTR_7g068590 58.607 244 91 4 1 244 3 236 2.92e-86 256
MS.gene051975.t1 MTR_1g015185 79.286 140 29 0 6 145 11 150 1.13e-70 216
MS.gene051975.t1 MTR_8g066480 51.471 136 46 5 116 250 29 145 2.23e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051975.t1 AT3G42790 72.653 245 61 3 6 250 11 249 2.36e-118 338
MS.gene051975.t1 AT5G20510 69.200 250 71 2 6 250 11 259 1.32e-113 327
MS.gene051975.t1 AT1G14510 67.755 245 76 3 6 250 10 251 6.90e-106 306
MS.gene051975.t1 AT2G02470 68.340 259 69 6 1 250 1 255 6.53e-105 304
MS.gene051975.t1 AT2G02470 68.504 254 68 6 1 250 1 246 4.64e-103 299
MS.gene051975.t1 AT5G26210 70.732 246 70 2 6 250 10 254 1.91e-93 275
MS.gene051975.t1 AT5G20510 68.519 216 62 2 40 250 4 218 5.08e-92 270
MS.gene051975.t1 AT5G05610 60.331 242 84 5 6 247 9 238 3.48e-88 261
MS.gene051975.t1 AT5G05610 60.331 242 84 5 6 247 9 238 3.48e-88 261
MS.gene051975.t1 AT3G11200 61.570 242 84 5 6 247 11 243 9.41e-86 255
MS.gene051975.t1 AT5G20510 74.194 155 40 0 6 160 11 165 9.82e-76 228
MS.gene051975.t1 AT3G11200 61.538 208 71 5 40 247 32 230 4.66e-72 220
MS.gene051975.t1 AT2G02470 72.785 158 38 2 1 154 1 157 1.00e-66 207

Find 59 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCCTCCTCATCTTT+TGG 0.240666 2.2:+3465638 None:intergenic
GGTTGTCTGCTCTGAGCTTC+AGG 0.243347 2.2:+3465677 None:intergenic
TTCTACTTTGGAGCCAGATT+TGG 0.290182 2.2:-3467757 MS.gene051975:CDS
ACGGATTGCTTAATGAGAAT+TGG 0.301755 2.2:-3467924 MS.gene051975:CDS
AAGGAGAATTTGTGCTTATA+CGG 0.310260 2.2:-3467943 MS.gene051975:CDS
AACAGGGCGAAGCCACTTGC+GGG 0.339120 2.2:-3465595 MS.gene051975:CDS
TTTGGCTGTAATGCCGCTTT+TGG 0.349429 2.2:+3465656 None:intergenic
GTAACGGGGCTGATGAGTTC+TGG 0.350703 2.2:-3465559 MS.gene051975:CDS
TGCTGGGTATCAACTTTGCC+AGG 0.351612 2.2:-3467852 MS.gene051975:CDS
CTTTGATGATTCCAGTTCTT+CGG 0.353581 2.2:+3468754 None:intergenic
AAGAAATTATACCGACGGTT+AGG 0.356361 2.2:+3468730 None:intergenic
ATTATTTACCGCTTTAGAAC+TGG 0.360765 2.2:+3466931 None:intergenic
GGGCTTGTGGTGATAGTAAC+GGG 0.362851 2.2:-3465574 MS.gene051975:CDS
AGAGATTCCTGAGCCTGTGC+TGG 0.371017 2.2:-3467869 MS.gene051975:CDS
GATTTCAAGAGCCGAAGAAC+TGG 0.371977 2.2:-3468765 MS.gene051975:CDS
ACAGTATTTGAAGTTGTAAC+TGG 0.378246 2.2:-3467019 MS.gene051975:CDS
CTTTCCCTTGCATTCTACTT+TGG 0.386606 2.2:-3467769 MS.gene051975:CDS
CGGATTGCTTAATGAGAATT+GGG 0.394937 2.2:-3467923 MS.gene051975:CDS
TTTCTCTTGCATTCCATCCC+TGG 0.397443 2.2:+3467834 None:intergenic
AGAGCAGGATGATGATGAAC+AGG 0.397479 2.2:-3465612 MS.gene051975:CDS
AGCTTTATCAAATCCAAATC+TGG 0.410286 2.2:+3467744 None:intergenic
AGCACAGGCTCAGGAATCTC+TGG 0.425752 2.2:+3467871 None:intergenic
AAAAGATGAGGAGGAAGAAC+TGG 0.426868 2.2:-3465636 MS.gene051975:CDS
TCTTGTTACTGCTGCATGAT+GGG 0.433135 2.2:+3465447 None:intergenic
TCTGGAGGAACTTCTTCAAC+AGG 0.445499 2.2:+3467889 None:intergenic
AGAAATTATACCGACGGTTA+GGG 0.452362 2.2:+3468731 None:intergenic
GGAGGAAGAACTGGAAGAGC+AGG 0.470600 2.2:-3465627 MS.gene051975:CDS
CTCTTGTTACTGCTGCATGA+TGG 0.480424 2.2:+3465446 None:intergenic
TTCTACAGACAATGTGATCC+TGG 0.488698 2.2:-3468544 MS.gene051975:intron
TTGATACCCAGCACAGGCTC+AGG 0.497706 2.2:+3467862 None:intergenic
ATCACTGTGAACAGCAACTA+AGG 0.498800 2.2:+3467801 None:intergenic
TTGCTGTTCACAGTGATACA+TGG 0.507689 2.2:-3467795 MS.gene051975:CDS
ATCTGCGAGAAGTGGTTCCA+TGG 0.517485 2.2:-3465524 MS.gene051975:CDS
GGTATCAACTTTGCCAGGGA+TGG 0.520071 2.2:-3467847 MS.gene051975:CDS
GAGATTCCTGAGCCTGTGCT+GGG 0.523852 2.2:-3467868 MS.gene051975:CDS
ATGGAATGCAAGAGAAAGAC+TGG 0.533268 2.2:-3467828 MS.gene051975:CDS
GAAGCCACTTGCGGGGCTTG+TGG 0.543776 2.2:-3465587 MS.gene051975:CDS
TTGATATGCTCAGCACGAGC+AGG 0.552258 2.2:+3465482 None:intergenic
GAATCGAATTGAACAATGGA+AGG 0.552287 2.2:-3468819 None:intergenic
TTGGATTTGATAAAGCTGAC+AGG 0.552742 2.2:-3467738 MS.gene051975:intron
GGGGCTTGTGGTGATAGTAA+CGG 0.558893 2.2:-3465575 MS.gene051975:CDS
GTTACAACTTCAAATACTGT+TGG 0.565683 2.2:+3467022 None:intergenic
GCTGCGACATCTGCGAGAAG+TGG 0.566172 2.2:-3465532 MS.gene051975:CDS
GAACAGGGCGAAGCCACTTG+CGG 0.571946 2.2:-3465596 MS.gene051975:CDS
TGGCTCCAAAGTAGAATGCA+AGG 0.572860 2.2:+3467764 None:intergenic
ATCTAAGTCCAGTTCTAAAG+CGG 0.587642 2.2:-3466939 MS.gene051975:intron
ATCACCACAAGCCCCGCAAG+TGG 0.598002 2.2:+3465583 None:intergenic
TCAGAGCAGACAACCAAAAG+CGG 0.606960 2.2:-3465669 MS.gene051975:CDS
GCTGGGTATCAACTTTGCCA+GGG 0.620748 2.2:-3467851 MS.gene051975:CDS
GCAAAGTTGATACCCAGCAC+AGG 0.629760 2.2:+3467856 None:intergenic
ATCATCAAAGCCCTAACCGT+CGG 0.634254 2.2:-3468741 MS.gene051975:intron
GGCATTACAGCCAAAAGATG+AGG 0.636479 2.2:-3465648 MS.gene051975:CDS
GGCTCCAAAGTAGAATGCAA+GGG 0.639786 2.2:+3467765 None:intergenic
ACAGGGCGAAGCCACTTGCG+GGG 0.643480 2.2:-3465594 MS.gene051975:CDS
ACAGGCTCAGGAATCTCTGG+AGG 0.651339 2.2:+3467874 None:intergenic
ATTACAGCCAAAAGATGAGG+AGG 0.661732 2.2:-3465645 MS.gene051975:CDS
GAGCAGGATGATGATGAACA+GGG 0.682274 2.2:-3465611 MS.gene051975:CDS
GGCTTGTGGTGATAGTAACG+GGG 0.707309 2.2:-3465573 MS.gene051975:CDS
TCTTCAGTCTCAAACAACAG+TGG 0.724521 2.2:-3466968 MS.gene051975:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGAAAATGATATTATT+AGG + chr2.2:3468155-3468174 None:intergenic 10.0%
!!! AAATAAATACAACTATTTTA+AGG + chr2.2:3466239-3466258 None:intergenic 10.0%
!!! AATAAATACAACTATTTTAA+GGG + chr2.2:3466238-3466257 None:intergenic 10.0%
!! AAATAAATAAGTTAACAATG+TGG - chr2.2:3467815-3467834 MS.gene051975:CDS 15.0%
!! ATTTGTGAATAAAAAAGTAA+AGG - chr2.2:3467688-3467707 MS.gene051975:intron 15.0%
!! GTATATAAACATAACTTATT+TGG + chr2.2:3468423-3468442 None:intergenic 15.0%
!! TAAATAAAATTCAAAAACCT+TGG + chr2.2:3465622-3465641 None:intergenic 15.0%
!!! AAAATGCCTTAATTTTAAAA+AGG + chr2.2:3467637-3467656 None:intergenic 15.0%
!!! AAATGCCTTAATTTTAAAAA+GGG + chr2.2:3467636-3467655 None:intergenic 15.0%
!!! TTCAATCTTTTTCAAAATTT+TGG - chr2.2:3465534-3465553 MS.gene051975:CDS 15.0%
!!! TTTATTGTCATTTTGAATTT+CGG - chr2.2:3468170-3468189 MS.gene051975:intron 15.0%
!!! TTTATTTTCCATCAATTTTA+GGG - chr2.2:3465790-3465809 MS.gene051975:intron 15.0%
!!! TTTTATTTTCCATCAATTTT+AGG - chr2.2:3465789-3465808 MS.gene051975:intron 15.0%
!! AAGAAAAATCTTATTCAACA+AGG + chr2.2:3466676-3466695 None:intergenic 20.0%
!! AAGTATACATATCATTAACA+GGG + chr2.2:3468257-3468276 None:intergenic 20.0%
!! AGAAAAATCTTATTCAACAA+GGG + chr2.2:3466675-3466694 None:intergenic 20.0%
!! AGATAAAAATAGTTATGCTT+CGG + chr2.2:3466538-3466557 None:intergenic 20.0%
!! TATCTAATTGATATCTTGTT+TGG - chr2.2:3468475-3468494 MS.gene051975:intron 20.0%
!! TCTATTGTTTATCCTATAAT+GGG - chr2.2:3467528-3467547 MS.gene051975:intron 20.0%
!! TGATAATTCATTGTTCTTTA+TGG - chr2.2:3465874-3465893 MS.gene051975:intron 20.0%
!! TTAACAATTAGATAAGAACA+CGG + chr2.2:3468525-3468544 None:intergenic 20.0%
!!! AAATTAAGGCATTTTTCAAA+TGG - chr2.2:3467642-3467661 MS.gene051975:intron 20.0%
!!! AGAATCCCTTTTTAAAATTA+AGG - chr2.2:3467628-3467647 MS.gene051975:intron 20.0%
!!! ATAAAAGAGCATTCAAATAT+CGG + chr2.2:3465775-3465794 None:intergenic 20.0%
!!! ATCATCAAAAATTTGTTCAA+CGG + chr2.2:3465458-3465477 None:intergenic 20.0%
!!! ATCTAATTGATATCTTGTTT+GGG - chr2.2:3468476-3468495 MS.gene051975:intron 20.0%
!!! CGCTATTATTATTTTAAACA+GGG + chr2.2:3467448-3467467 None:intergenic 20.0%
!!! TCGCTATTATTATTTTAAAC+AGG + chr2.2:3467449-3467468 None:intergenic 20.0%
!!! TTATTGTCATTTTGAATTTC+GGG - chr2.2:3468171-3468190 MS.gene051975:intron 20.0%
!!! TTTCATTAAATTTTCTACCA+AGG - chr2.2:3465602-3465621 MS.gene051975:CDS 20.0%
!!! TTTTCAAAATTTTGGCAAAA+GGG - chr2.2:3465542-3465561 MS.gene051975:CDS 20.0%
!!! TTTTTCAAAATTTTGGCAAA+AGG - chr2.2:3465541-3465560 MS.gene051975:CDS 20.0%
!!! TTTTTTTGCAATAAACAACA+AGG + chr2.2:3467793-3467812 None:intergenic 20.0%
! AAACATAACTTATTTGGAAG+TGG + chr2.2:3468417-3468436 None:intergenic 25.0%
! ACATTGAAATTAAACTAACC+AGG + chr2.2:3465717-3465736 None:intergenic 25.0%
! ATTGACTGATAAATAAAAGG+CGG + chr2.2:3465942-3465961 None:intergenic 25.0%
! CAAGTATACATATCATTAAC+AGG + chr2.2:3468258-3468277 None:intergenic 25.0%
! CTGTTAATGATATGTATACT+TGG - chr2.2:3468256-3468275 MS.gene051975:intron 25.0%
! GAATTTGGACTGAATATTTA+TGG - chr2.2:3468070-3468089 MS.gene051975:intron 25.0%
! GATAAAAATAGTTATGCTTC+GGG + chr2.2:3466537-3466556 None:intergenic 25.0%
! GCAAATAAAATTGCAAATCA+AGG + chr2.2:3466749-3466768 None:intergenic 25.0%
! GTCTATTGTTTATCCTATAA+TGG - chr2.2:3467527-3467546 MS.gene051975:intron 25.0%
! GTGAAGTATGATGAATATAT+TGG - chr2.2:3468006-3468025 MS.gene051975:intron 25.0%
! TAAAGAAAAAACCACTTGAT+AGG + chr2.2:3467039-3467058 None:intergenic 25.0%
! TAATGATATGTATACTTGGT+TGG - chr2.2:3468260-3468279 MS.gene051975:intron 25.0%
! TAATTGAACCCTAAAATTGA+TGG + chr2.2:3465801-3465820 None:intergenic 25.0%
! TATCTCTCATCATTATTAAG+CGG + chr2.2:3468368-3468387 None:intergenic 25.0%
! TATTCTTGCACTAAAATGTT+TGG - chr2.2:3465640-3465659 MS.gene051975:CDS 25.0%
! TTGCTTATAAATCATTGTTG+AGG - chr2.2:3466765-3466784 MS.gene051975:intron 25.0%
! TTGTCTCCTTCTTTATTAAT+CGG - chr2.2:3467873-3467892 MS.gene051975:CDS 25.0%
!! AAAGGAACAACTAGTTTAAT+TGG - chr2.2:3467706-3467725 MS.gene051975:intron 25.0%
!! AATCATCTGTGTATTTGTTT+TGG - chr2.2:3467093-3467112 MS.gene051975:intron 25.0%
!! ACTAAAGAATCGTTTCATTT+TGG + chr2.2:3467747-3467766 None:intergenic 25.0%
!!! AATAATTTGCTTATCCAAAC+AGG - chr2.2:3466212-3466231 MS.gene051975:intron 25.0%
!!! ATACCATTTTTTCCTGAAAA+AGG - chr2.2:3466834-3466853 MS.gene051975:intron 25.0%
!!! CTTTTATTTATCAGTCAATG+CGG - chr2.2:3465943-3465962 MS.gene051975:intron 25.0%
!!! TAAGCTATTTCTAAGGAAAA+TGG + chr2.2:3466140-3466159 None:intergenic 25.0%
!!! TACCATTTTTTCCTGAAAAA+GGG - chr2.2:3466835-3466854 MS.gene051975:intron 25.0%
AAGGAGAATTTGTGCTTATA+CGG - chr2.2:3466297-3466316 MS.gene051975:intron 30.0%
AAGGTATGCAGAAATAAAAG+AGG - chr2.2:3468117-3468136 MS.gene051975:intron 30.0%
AATTGAAGATTCCTATCAAG+TGG - chr2.2:3467025-3467044 MS.gene051975:CDS 30.0%
ACTCCTGAAAAAGTTATATC+AGG - chr2.2:3466565-3466584 MS.gene051975:intron 30.0%
ACTTTCAATGCAAAATTGTG+TGG - chr2.2:3468441-3468460 MS.gene051975:intron 30.0%
AGGGTTCAATTATTTGCAAT+TGG - chr2.2:3465809-3465828 MS.gene051975:intron 30.0%
AGTTTCCACTAACTATGATA+TGG - chr2.2:3468340-3468359 MS.gene051975:intron 30.0%
ATATCAGGATGAGTATGTTA+AGG - chr2.2:3466580-3466599 MS.gene051975:intron 30.0%
CAAAATTTGTAGATCAAGCA+AGG + chr2.2:3465578-3465597 None:intergenic 30.0%
CTGTTGTATTCTTTCAGAAA+AGG - chr2.2:3466278-3466297 MS.gene051975:intron 30.0%
GTTACAACTTCAAATACTGT+TGG + chr2.2:3467221-3467240 None:intergenic 30.0%
TAGACTCCGATTAATAAAGA+AGG + chr2.2:3467882-3467901 None:intergenic 30.0%
TATACATATCATTAACAGGG+TGG + chr2.2:3468254-3468273 None:intergenic 30.0%
TATGTATACTTGGTTGGAAA+TGG - chr2.2:3468266-3468285 MS.gene051975:intron 30.0%
TGAACAAGAAATTATACCGA+CGG + chr2.2:3465518-3465537 None:intergenic 30.0%
TTCAAGTGTAGACTGTATAT+AGG - chr2.2:3467604-3467623 MS.gene051975:intron 30.0%
TTGTCGCATTTCTATGATTT+AGG - chr2.2:3465988-3466007 MS.gene051975:intron 30.0%
! AATCGGAGTCTAAAATACTT+TGG - chr2.2:3467890-3467909 MS.gene051975:CDS 30.0%
! ACAGTATTTGAAGTTGTAAC+TGG - chr2.2:3467221-3467240 MS.gene051975:intron 30.0%
! AGCTTTATCAAATCCAAATC+TGG + chr2.2:3466499-3466518 None:intergenic 30.0%
! CTTGCTTGATCTACAAATTT+TGG - chr2.2:3465576-3465595 MS.gene051975:CDS 30.0%
! TGCGACAAATTTTGCATTAT+AGG + chr2.2:3465976-3465995 None:intergenic 30.0%
! TGTACTTGTATGATGGAATT+TGG - chr2.2:3468055-3468074 MS.gene051975:intron 30.0%
! TTAATTGGTTTCTTTGAGCA+AGG - chr2.2:3467721-3467740 MS.gene051975:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr2.2:3466049-3466068 MS.gene051975:intron 30.0%
!! ATTATTTACCGCTTTAGAAC+TGG + chr2.2:3467312-3467331 None:intergenic 30.0%
!! CATCCTGATATAACTTTTTC+AGG + chr2.2:3466571-3466590 None:intergenic 30.0%
!! CGCATTGACTGATAAATAAA+AGG + chr2.2:3465945-3465964 None:intergenic 30.0%
!! GCTTACATAAGCTATTTCTA+AGG + chr2.2:3466147-3466166 None:intergenic 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr2.2:3466050-3466069 MS.gene051975:intron 30.0%
!! TTGGTGTTTCGTTACATTTT+GGG - chr2.2:3467909-3467928 MS.gene051975:CDS 30.0%
!!! ACCATTTTTTCCTGAAAAAG+GGG - chr2.2:3466836-3466855 MS.gene051975:intron 30.0%
!!! TGTTTTAAGATAGTGCAAGA+AGG - chr2.2:3466970-3466989 MS.gene051975:CDS 30.0%
!!! TTTGGTGTTTCGTTACATTT+TGG - chr2.2:3467908-3467927 MS.gene051975:CDS 30.0%
AAGAAATTATACCGACGGTT+AGG + chr2.2:3465513-3465532 None:intergenic 35.0%
AATGGCAAATTAGGACAAGA+AGG + chr2.2:3467157-3467176 None:intergenic 35.0%
AGAAATTATACCGACGGTTA+GGG + chr2.2:3465512-3465531 None:intergenic 35.0%
AGTATGTTAAGGCAGTAGTT+TGG - chr2.2:3466591-3466610 MS.gene051975:intron 35.0%
AGTTAGTGGAAACTTGTGAA+GGG + chr2.2:3468334-3468353 None:intergenic 35.0%
ATAGTGCAAGAAGGAAAAGT+TGG - chr2.2:3466979-3466998 MS.gene051975:CDS 35.0%
CAATGCATGAAAGATAACCA+TGG + chr2.2:3467508-3467527 None:intergenic 35.0%
CATGGACAAAAGACAATACA+TGG + chr2.2:3467490-3467509 None:intergenic 35.0%
CGGATTGCTTAATGAGAATT+GGG - chr2.2:3466317-3466336 MS.gene051975:intron 35.0%
GAAGAACTTTACCTTAAGCT+TGG - chr2.2:3467939-3467958 MS.gene051975:CDS 35.0%
GCTAGAAAGCAGTTATAAAG+TGG + chr2.2:3466721-3466740 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG - chr2.2:3466025-3466044 MS.gene051975:intron 35.0%
GTCTACACTTGAAAAACCAT+AGG + chr2.2:3467597-3467616 None:intergenic 35.0%
TAGTTAGTGGAAACTTGTGA+AGG + chr2.2:3468335-3468354 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr2.2:3466015-3466034 None:intergenic 35.0%
TCAATGCAAAATTGTGTGGA+AGG - chr2.2:3468445-3468464 MS.gene051975:intron 35.0%
TGAATCGCAGTGTAAAACTT+AGG - chr2.2:3467387-3467406 MS.gene051975:intron 35.0%
TGCAATAAACAACAAGGTCT+TGG + chr2.2:3467787-3467806 None:intergenic 35.0%
TGCATCACAAATGGCAAATT+AGG + chr2.2:3467166-3467185 None:intergenic 35.0%
TTCAAGTGTAGACTGTTCAT+AGG - chr2.2:3467416-3467435 MS.gene051975:intron 35.0%
TTGCAGAATAACCAAGCTTA+AGG + chr2.2:3467953-3467972 None:intergenic 35.0%
TTGGATTTGATAAAGCTGAC+AGG - chr2.2:3466502-3466521 MS.gene051975:intron 35.0%
! ACGGATTGCTTAATGAGAAT+TGG - chr2.2:3466316-3466335 MS.gene051975:intron 35.0%
! CAAGCTTTGTACTTGTATGA+TGG - chr2.2:3468048-3468067 MS.gene051975:intron 35.0%
! CACTTGAATTGCTACTTGTA+AGG - chr2.2:3468098-3468117 MS.gene051975:intron 35.0%
! CATGTATTGTCTTTTGTCCA+TGG - chr2.2:3467488-3467507 MS.gene051975:intron 35.0%
! CTTTGATGATTCCAGTTCTT+CGG + chr2.2:3465489-3465508 None:intergenic 35.0%
! TAATTTGCCATTTGTGATGC+AGG - chr2.2:3467165-3467184 MS.gene051975:intron 35.0%
! TCTATGATTTAGGACCTGTT+TGG - chr2.2:3465998-3466017 MS.gene051975:intron 35.0%
! TGATCTTCACACATTTTCCA+TGG + chr2.2:3468736-3468755 None:intergenic 35.0%
! TGGTGTTTCGTTACATTTTG+GGG - chr2.2:3467910-3467929 MS.gene051975:CDS 35.0%
!! AACTATTTTAAGGGCCTGTT+TGG + chr2.2:3466229-3466248 None:intergenic 35.0%
!! ATCTAAGTCCAGTTCTAAAG+CGG - chr2.2:3467301-3467320 MS.gene051975:intron 35.0%
!! CTTGTAGCTTTGAATTCTGA+TGG - chr2.2:3465902-3465921 MS.gene051975:intron 35.0%
!! TACCAAAAGAGCATCAATTG+TGG + chr2.2:3467066-3467085 None:intergenic 35.0%
!! TCGTTACATTTTGGGGATAA+TGG - chr2.2:3467917-3467936 MS.gene051975:CDS 35.0%
!! TGAATTTCGGGTTTAGAATG+TGG - chr2.2:3468183-3468202 MS.gene051975:intron 35.0%
!!! TCCCCTTTTTCAGGAAAAAA+TGG + chr2.2:3466840-3466859 None:intergenic 35.0%
AAAAGATGAGGAGGAAGAAC+TGG - chr2.2:3468604-3468623 MS.gene051975:intron 40.0%
AAACAACAAGGTCTTGGATG+AGG + chr2.2:3467781-3467800 None:intergenic 40.0%
ACGAAAATCCAACACAACGA+TGG + chr2.2:3466648-3466667 None:intergenic 40.0%
ATCACTGTGAACAGCAACTA+AGG + chr2.2:3466442-3466461 None:intergenic 40.0%
ATGGAATGCAAGAGAAAGAC+TGG - chr2.2:3466412-3466431 MS.gene051975:intron 40.0%
ATTACAGCCAAAAGATGAGG+AGG - chr2.2:3468595-3468614 MS.gene051975:intron 40.0%
CAATACATGGAGAGTTTGTC+AGG + chr2.2:3467477-3467496 None:intergenic 40.0%
CACAGACTAAACAATCTGCA+TGG + chr2.2:3467560-3467579 None:intergenic 40.0%
CCATGTATGATGTGACTAAG+AGG + chr2.2:3466912-3466931 None:intergenic 40.0%
CCTCTTAGTCACATCATACA+TGG - chr2.2:3466909-3466928 MS.gene051975:intron 40.0%
CTTTCCCTTGCATTCTACTT+TGG - chr2.2:3466471-3466490 MS.gene051975:intron 40.0%
TCTTCAGTCTCAAACAACAG+TGG - chr2.2:3467272-3467291 MS.gene051975:intron 40.0%
TCTTGTTACTGCTGCATGAT+GGG + chr2.2:3468796-3468815 None:intergenic 40.0%
TGATGTGACTAAGAGGTCAT+AGG + chr2.2:3466905-3466924 None:intergenic 40.0%
TGTTCTCATCTATCTGCCTA+TGG - chr2.2:3467578-3467597 MS.gene051975:intron 40.0%
TTCTACAGACAATGTGATCC+TGG - chr2.2:3465696-3465715 MS.gene051975:intron 40.0%
TTGTTTAGCCATCGTTGTGT+TGG - chr2.2:3466637-3466656 MS.gene051975:intron 40.0%
! AGCCACAATTGATGCTCTTT+TGG - chr2.2:3467061-3467080 MS.gene051975:intron 40.0%
! AGTTCTTCCTCCTCATCTTT+TGG + chr2.2:3468605-3468624 None:intergenic 40.0%
! GATTTAGGACCTGTTTGGAT+TGG - chr2.2:3466003-3466022 MS.gene051975:intron 40.0%
! GCACAAGTTTTCAACATGAG+AGG - chr2.2:3468389-3468408 MS.gene051975:intron 40.0%
! TTGCTGTTCACAGTGATACA+TGG - chr2.2:3466445-3466464 MS.gene051975:intron 40.0%
!! GTAGCTTTGAATTCTGATGG+AGG - chr2.2:3465905-3465924 MS.gene051975:intron 40.0%
!! TTCTACTTTGGAGCCAGATT+TGG - chr2.2:3466483-3466502 MS.gene051975:intron 40.0%
ATCATCAAAGCCCTAACCGT+CGG - chr2.2:3465499-3465518 MS.gene051975:CDS 45.0%
CATGGCAGCATTTCTATAGC+AGG - chr2.2:3466927-3466946 MS.gene051975:intron 45.0%
CCTCTTGCAGATGCAAAGTA+AGG + chr2.2:3466864-3466883 None:intergenic 45.0%
CCTTACTTTGCATCTGCAAG+AGG - chr2.2:3466861-3466880 MS.gene051975:intron 45.0%
CTCTTGTTACTGCTGCATGA+TGG + chr2.2:3468797-3468816 None:intergenic 45.0%
GAAGGAGACAAGCTGTAAAC+TGG + chr2.2:3467864-3467883 None:intergenic 45.0%
GACGTTTCCTGCATCACAAA+TGG + chr2.2:3467175-3467194 None:intergenic 45.0%
GATTTCAAGAGCCGAAGAAC+TGG - chr2.2:3465475-3465494 MS.gene051975:CDS 45.0%
GGCATTACAGCCAAAAGATG+AGG - chr2.2:3468592-3468611 MS.gene051975:intron 45.0%
GGCTCCAAAGTAGAATGCAA+GGG + chr2.2:3466478-3466497 None:intergenic 45.0%
GTTGAGGCAGTATTCCAACA+CGG - chr2.2:3466781-3466800 MS.gene051975:intron 45.0%
TCAGAGCAGACAACCAAAAG+CGG - chr2.2:3468571-3468590 MS.gene051975:intron 45.0%
TCTGGAGGAACTTCTTCAAC+AGG + chr2.2:3466354-3466373 None:intergenic 45.0%
TGGAAACTTGTGAAGGGAGA+TGG + chr2.2:3468328-3468347 None:intergenic 45.0%
TGGCTCCAAAGTAGAATGCA+AGG + chr2.2:3466479-3466498 None:intergenic 45.0%
TTTCTCTTGCATTCCATCCC+TGG + chr2.2:3466409-3466428 None:intergenic 45.0%
! AAGTAAGGCTCCCCTTTTTC+AGG + chr2.2:3466849-3466868 None:intergenic 45.0%
! AGAGCAGGATGATGATGAAC+AGG - chr2.2:3468628-3468647 MS.gene051975:intron 45.0%
! GAGCAGGATGATGATGAACA+GGG - chr2.2:3468629-3468648 MS.gene051975:intron 45.0%
!! CGGTGCCATATCATAGTTAG+TGG + chr2.2:3468348-3468367 None:intergenic 45.0%
!! GCATGGAGAGTACCCATTAT+AGG + chr2.2:3467543-3467562 None:intergenic 45.0%
!!! TTTGGCTGTAATGCCGCTTT+TGG + chr2.2:3468587-3468606 None:intergenic 45.0%
ATCTGCGAGAAGTGGTTCCA+TGG - chr2.2:3468716-3468735 MS.gene051975:intron 50.0%
GCAGTATTCCAACACGGAGA+CGG - chr2.2:3466787-3466806 MS.gene051975:intron 50.0%
GCTGGGTATCAACTTTGCCA+GGG - chr2.2:3466389-3466408 MS.gene051975:intron 50.0%
GGCTTGTGGTGATAGTAACG+GGG - chr2.2:3468667-3468686 MS.gene051975:intron 50.0%
GGGCTTGTGGTGATAGTAAC+GGG - chr2.2:3468666-3468685 MS.gene051975:intron 50.0%
GGGGCTTGTGGTGATAGTAA+CGG - chr2.2:3468665-3468684 MS.gene051975:intron 50.0%
GGTATCAACTTTGCCAGGGA+TGG - chr2.2:3466393-3466412 MS.gene051975:intron 50.0%
TGCTGGGTATCAACTTTGCC+AGG - chr2.2:3466388-3466407 MS.gene051975:intron 50.0%
TTCAACATCCGTCTCCGTGT+TGG + chr2.2:3466798-3466817 None:intergenic 50.0%
TTGATATGCTCAGCACGAGC+AGG + chr2.2:3468761-3468780 None:intergenic 50.0%
!! GCAAAGTTGATACCCAGCAC+AGG + chr2.2:3466387-3466406 None:intergenic 50.0%
ACAGGCTCAGGAATCTCTGG+AGG + chr2.2:3466369-3466388 None:intergenic 55.0%
AGAGATTCCTGAGCCTGTGC+TGG - chr2.2:3466371-3466390 MS.gene051975:intron 55.0%
AGCACAGGCTCAGGAATCTC+TGG + chr2.2:3466372-3466391 None:intergenic 55.0%
GAGATTCCTGAGCCTGTGCT+GGG - chr2.2:3466372-3466391 MS.gene051975:intron 55.0%
GAGGTCATAGGCTCAAGTCG+TGG + chr2.2:3466893-3466912 None:intergenic 55.0%
GGAGGAAGAACTGGAAGAGC+AGG - chr2.2:3468613-3468632 MS.gene051975:intron 55.0%
TTGATACCCAGCACAGGCTC+AGG + chr2.2:3466381-3466400 None:intergenic 55.0%
! GGTTGTCTGCTCTGAGCTTC+AGG + chr2.2:3468566-3468585 None:intergenic 55.0%
! GTAACGGGGCTGATGAGTTC+TGG - chr2.2:3468681-3468700 MS.gene051975:intron 55.0%
AACAGGGCGAAGCCACTTGC+GGG - chr2.2:3468645-3468664 MS.gene051975:intron 60.0%
ATCACCACAAGCCCCGCAAG+TGG + chr2.2:3468660-3468679 None:intergenic 60.0%
GAACAGGGCGAAGCCACTTG+CGG - chr2.2:3468644-3468663 MS.gene051975:intron 60.0%
GCTGCGACATCTGCGAGAAG+TGG - chr2.2:3468708-3468727 MS.gene051975:intron 60.0%
ACAGGGCGAAGCCACTTGCG+GGG - chr2.2:3468646-3468665 MS.gene051975:intron 65.0%
GAAGCCACTTGCGGGGCTTG+TGG - chr2.2:3468653-3468672 MS.gene051975:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3465436 3468826 3465436 ID=MS.gene051975
chr2.2 mRNA 3465436 3468826 3465436 ID=MS.gene051975.t1;Parent=MS.gene051975
chr2.2 exon 3468742 3468826 3468742 ID=MS.gene051975.t1.exon1;Parent=MS.gene051975.t1
chr2.2 CDS 3468742 3468826 3468742 ID=cds.MS.gene051975.t1;Parent=MS.gene051975.t1
chr2.2 exon 3468545 3468577 3468545 ID=MS.gene051975.t1.exon2;Parent=MS.gene051975.t1
chr2.2 CDS 3468545 3468577 3468545 ID=cds.MS.gene051975.t1;Parent=MS.gene051975.t1
chr2.2 exon 3467739 3467967 3467739 ID=MS.gene051975.t1.exon3;Parent=MS.gene051975.t1
chr2.2 CDS 3467739 3467967 3467739 ID=cds.MS.gene051975.t1;Parent=MS.gene051975.t1
chr2.2 exon 3466940 3467075 3466940 ID=MS.gene051975.t1.exon4;Parent=MS.gene051975.t1
chr2.2 CDS 3466940 3467075 3466940 ID=cds.MS.gene051975.t1;Parent=MS.gene051975.t1
chr2.2 exon 3465436 3465705 3465436 ID=MS.gene051975.t1.exon5;Parent=MS.gene051975.t1
chr2.2 CDS 3465436 3465705 3465436 ID=cds.MS.gene051975.t1;Parent=MS.gene051975.t1
Gene Sequence

>MS.gene051975

ATGGAAGGTCGAAGTCGCACCGTTGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACTGGAATCATCAAAGCCCTAACCGTCGGTATAATTTCTTGTTCAATCTTTTTCAAAATTTTGGCAAAAGGGTTTTTCATTTCCTTGCTTGATCTACAAATTTTGGATTTTTCATTAAATTTTCTACCAAGGTTTTTGAATTTTATTTATTCTTGCACTAAAATGTTTGGTTTTATTGTCATGTTGTTGCAGATGTTGAAGATTTCTACAGACAATGTGATCCTGGTTAGTTTAATTTCAATGTTTTCTCTCAAAAAAATTATGAATTTCATTTTGTTGCCGATATTTGAATGCTCTTTTATTTTCCATCAATTTTAGGGTTCAATTATTTGCAATTGGTATCACTGATTTGTGTAATTTAGATGTGTTGCGTATGTTAATTGATAATTCATTGTTCTTTATGGCTTTACTTGTAGCTTTGAATTCTGATGGAGGAGATTTTTCAGCCGCCTTTTATTTATCAGTCAATGCGGCTATAAGCCTATAATGCAAAATTTGTCGCATTTCTATGATTTAGGACCTGTTTGGATTGGCTTATTTGAGCTTATCTACTGGCATAAGTTTTGTGAGACTGTTTGGGAGAAGTTTTGAAAACAGCTTATGACATCTTATAGCATATACAAAAACAATTTAACTTTATTTTACCATTTTCCTTAGAAATAGCTTATGTAAGCTTATACATAAGCGCTTATCATGACAAGTGTGTGCTATTAGCTGCAAATAATTTGCTTATCCAAACAGGCCCTTAAAATAGTTGTATTTATTTCATATACAAGTTTTCATATCTGTTGTATTCTTTCAGAAAAGGAGAATTTGTGCTTATACGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCAGAGATTCCTGAGCCTGTGCTGGGTATCAACTTTGCCAGGGATGGAATGCAAGAGAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTGGATTTGATAAAGCTGACAGGTATATATTACCCGAAGCATAACTATTTTTATCTGATATTAACTCCTGAAAAAGTTATATCAGGATGAGTATGTTAAGGCAGTAGTTTGGATCATACTTTTCTTATCTTACATTTGTTTAGCCATCGTTGTGTTGGATTTTCGTTACACCCTTGTTGAATAAGATTTTTCTTGTTTAGCATGAAGCAATTGTCTCCACTTTATAACTGCTTTCTAGCATCAGCCTTGATTTGCAATTTTATTTGCTTATAAATCATTGTTGAGGCAGTATTCCAACACGGAGACGGATGTTGAAGCATAGAAAAAAATGTATACCATTTTTTCCTGAAAAAGGGGAGCCTTACTTTGCATCTGCAAGAGGCTGATTCCACGACTTGAGCCTATGACCTCTTAGTCACATCATACATGGCAGCATTTCTATAGCAGGTTATCTGCTGAGTATCAACTTGTTTTAAGATAGTGCAAGAAGGAAAAGTTGGACTTGTATATTGATTATCATGTGAATTGAAGATTCCTATCAAGTGGTTTTTTCTTTAGCAGCCACAATTGATGCTCTTTTGGTATTAATGTAATCATCTGTGTATTTGTTTTGGATACTTGTTGTTAATGTCACATGCATTTTATCATGCATCCTTCTTGTCCTAATTTGCCATTTGTGATGCAGGAAACGTCTATTCAATTTGATCAATGAACTGCCAACAGTATTTGAAGTTGTAACTGGTGCTGCAAAGAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGGTAAATAATTCTTGACAAACATTCATCACAAATAGATACATCTGTTCATAAGTATTTGTCTATCTGAATCGCAGTGTAAAACTTAGGATGTTTTTCAAGTGTAGACTGTTCATAGGTAGAAACCCTGTTTAAAATAATAATAGCGATCTATCCTGACAAACTCTCCATGTATTGTCTTTTGTCCATGGTTATCTTTCATGCATTGTCTATTGTTTATCCTATAATGGGTACTCTCCATGCAGATTGTTTAGTCTGTGTTCTCATCTATCTGCCTATGGTTTTTCAAGTGTAGACTGTATATAGGTAGAATCCCTTTTTAAAATTAAGGCATTTTTCAAATGGTTATTATTATTTGTCTGTTAAGCATTTGTGAATAAAAAAGTAAAGGAACAACTAGTTTAATTGGTTTCTTTGAGCAAGGCCAAAATGAAACGATTCTTTAGTATAAAGTTCTTCCTCATCCAAGACCTTGTTGTTTATTGCAAAAAAAATAAATAAATAAGTTAACAATGTGGTAAACAATCTCTTGATCTTTGAACCAGTTTACAGCTTGTCTCCTTCTTTATTAATCGGAGTCTAAAATACTTTGGTGTTTCGTTACATTTTGGGGATAATGGAAGAACTTTACCTTAAGCTTGGTTATTCTGCAATTGTTTTGACATTGCTTATACATTCAAATGAAAGTGAAGTATGATGAATATATTGGTTGCACTGATTAATTGTTGCAAGCTTTGTACTTGTATGATGGAATTTGGACTGAATATTTATGGCATAACACTTGAATTGCTACTTGTAAGGTATGCAGAAATAAAAGAGGAGAGTAGAACATCCTAATAATATCATTTTCTTTATTGTCATTTTGAATTTCGGGTTTAGAATGTGGATAAGTATAGTATCACATTATTGTTTTCGAAGCATATGATTGAAGCCACCCTGTTAATGATATGTATACTTGGTTGGAAATGGATCATCTCGTGTTGAACTTTCATAATAAAATCGCGTCCATCTCCCTTCACAAGTTTCCACTAACTATGATATGGCACCGCTTAATAATGATGAGAGATATGCACAAGTTTTCAACATGAGAGGATCCACTTCCAAATAAGTTATGTTTATATACTTTCAATGCAAAATTGTGTGGAAGGTTAAGAATATCTAATTGATATCTTGTTTGGGTTCTGTTCTAATTCTGAGATAGTCCGTGTTCTTATCTAATTGTTAACTGTTTGAGCAGCGAGCTCCTGAAGCTCAGAGCAGACAACCAAAAGCGGCATTACAGCCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGCGAAGCCACTTGCGGGGCTTGTGGTGATAGTAACGGGGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAG

Protein sequence

>MS.gene051975.t1

MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALQPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR