AlfalfaGEDB | MS.gene50039

M. sativa cultivar XinJiangDaYe / MS.gene50039

KEGG: K09060
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50039.t1	XP_022147376.1	66.1	118	33	2	48	160	235	350	3.60E-20	108.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50039.t1	Q99142	64.7	116	34	2	50	160	144	257	9.4e-17	88.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50039.t1	A0A151TXY8	65.5	119	34	2	48	161	223	339	1.7e-19	105.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene50039.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051525	MS.gene50039	0.810642	1.04E-50	-1.69E-46
MS.gene056514	MS.gene50039	0.803561	3.29E-49	-1.69E-46
MS.gene057749	MS.gene50039	0.802372	5.79E-49	-1.69E-46
MS.gene057825	MS.gene50039	0.805155	1.53E-49	-1.69E-46
MS.gene059420	MS.gene50039	0.807838	4.16E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50039.t1	MTR_8g028150	87.288	118	13	1	44	161	229	344	3.65e-64	202
MS.gene50039.t1	MTR_7g116890	68.067	119	31	2	48	161	229	345	2.42e-44	151
MS.gene50039.t1	MTR_8g070820	41.912	136	55	4	48	161	238	371	9.40e-20	85.1
MS.gene50039.t1	MTR_8g077950	60.526	76	27	2	87	161	249	322	7.45e-19	82.0
MS.gene50039.t1	MTR_8g077950	60.526	76	27	2	87	161	251	324	8.22e-19	82.0
MS.gene50039.t1	MTR_8g077950	60.526	76	27	2	87	161	191	264	1.16e-18	80.9
MS.gene50039.t1	MTR_5g028850	60.274	73	27	1	89	161	302	372	2.95e-18	80.9
MS.gene50039.t1	MTR_5g028850	60.274	73	27	1	89	161	300	370	3.81e-18	80.5
MS.gene50039.t1	MTR_8g070820	44.915	118	51	4	48	161	238	345	1.12e-17	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50039.t1	AT2G46270	59.813	107	33	3	54	160	226	322	6.03e-30	112
MS.gene50039.t1	AT2G46270	59.813	107	33	3	54	160	226	322	6.03e-30	112
MS.gene50039.t1	AT2G46270	75.362	69	15	1	92	160	233	299	5.13e-24	96.3
MS.gene50039.t1	AT2G46270	75.362	69	15	1	92	160	233	299	5.13e-24	96.3
MS.gene50039.t1	AT4G01120	51.000	100	36	4	61	160	226	312	4.92e-20	85.5
MS.gene50039.t1	AT2G35530	51.546	97	34	3	73	161	278	369	1.02e-19	85.1
MS.gene50039.t1	AT1G32150	57.333	75	28	2	89	161	287	359	1.81e-17	78.6
MS.gene50039.t1	AT4G36730	54.167	72	31	1	90	161	215	284	4.09e-15	71.6
MS.gene50039.t1	AT4G36730	54.167	72	31	1	90	161	217	286	4.23e-15	71.6

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Find 37 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGGAACACCAACAACCAC+TGG	0.585041	2.3:-3499743	MS.gene50039:intron
ACAAGGCTGTGGAACACTGG+TGG	0.593279	2.3:+3499243	None:intergenic
ACACTGGTGGAAATAGGCGA+AGG	0.605436	2.3:+3499256	None:intergenic
ACAGGCTGAGGCTGAAGAAT+TGG	0.391234	2.3:-3498540	MS.gene50039:intron
ACCAGTGTTCCACAGCCTTG+TGG	0.495543	2.3:-3499241	MS.gene50039:CDS
ACCTGCATCCAAGCTTCAGG+AGG	0.636392	2.3:+3499211	None:intergenic
AGAGTGAGCTGAAACGTGAG+AGG	0.623183	2.3:-3499048	MS.gene50039:CDS
AGTACCTGCATCCAAGCTTC+AGG	0.494330	2.3:+3499208	None:intergenic
AGTGGTTGTTGGTGTTCCAT+TGG	0.474613	2.3:+3499745	None:intergenic
ATTACTTGAACAGATGGAGA+AGG	0.590419	2.3:-3499422	MS.gene50039:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGCTGAAAAGAGCTTA+TGG	+	chr2.3:3499393-3499412	None:intergenic	30.0%
ACTGACACTAAAGTAATTCT+TGG	-	chr2.3:3499104-3499123	MS.gene50039:intron	30.0%
AGTATTGTTTATCATACCAG+TGG	+	chr2.3:3498469-3498488	None:intergenic	30.0%
ATGTAATTAACTCTCAAACG+AGG	+	chr2.3:3498682-3498701	None:intergenic	30.0%
CAATGTTATAAACAGACCAA+TGG	-	chr2.3:3498432-3498451	MS.gene50039:CDS	30.0%
CCAATTGTTAATGCATGATA+AGG	-	chr2.3:3498596-3498615	MS.gene50039:intron	30.0%
CCTTATCATGCATTAACAAT+TGG	+	chr2.3:3498599-3498618	None:intergenic	30.0%
CTGGATTACAAATATACTTC+TGG	-	chr2.3:3498496-3498515	MS.gene50039:CDS	30.0%
GAAATCGGAAATGAATGAAT+TGG	-	chr2.3:3499716-3499735	MS.gene50039:intron	30.0%
GTACTAATTACTTGAACAGA+TGG	-	chr2.3:3498765-3498784	MS.gene50039:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	3498418	3499797	3498418	ID=MS.gene50039
chr2.3	mRNA	3498418	3499797	3498418	ID=MS.gene50039.t1;Parent=MS.gene50039
chr2.3	exon	3499744	3499797	3499744	ID=MS.gene50039.t1.exon1;Parent=MS.gene50039.t1
chr2.3	CDS	3499744	3499797	3499744	ID=cds.MS.gene50039.t1;Parent=MS.gene50039.t1
chr2.3	exon	3499213	3499431	3499213	ID=MS.gene50039.t1.exon2;Parent=MS.gene50039.t1
chr2.3	CDS	3499213	3499431	3499213	ID=cds.MS.gene50039.t1;Parent=MS.gene50039.t1
chr2.3	exon	3498991	3499074	3498991	ID=MS.gene50039.t1.exon3;Parent=MS.gene50039.t1
chr2.3	CDS	3498991	3499074	3498991	ID=cds.MS.gene50039.t1;Parent=MS.gene50039.t1
chr2.3	exon	3498418	3498558	3498418	ID=MS.gene50039.t1.exon4;Parent=MS.gene50039.t1
chr2.3	CDS	3498418	3498558	3498418	ID=cds.MS.gene50039.t1;Parent=MS.gene50039.t1

Gene Sequence

>MS.gene50039

ATGAAAATGTTTGCCAATGTTATAAACAGACCAATGGAACACCAACAACCACTGGTATGATAAACAATACTAGTTATTCTGGATTACAAATATACTTCTGGTGTCATGTCATGTCATGAATGACTGTAACCGTGGTGTCAACAATTCATTGAGTATGATCTTGATAAATAAATACTATCCAATTGTTAATGCATGATAAGGTGAAGTTACCATGCTTTTAAATTTCTGATTAATTTGAATCATTTGATACCAAGACTGGCACCTCGTTTGAGAGTTAATTACATTCAATTTTTTTGGTTTCATAAGGATGCATTTATCGATAAAACGTTATCTACTAGTAACTTAATGTACTAATTACTTGAACAGATGGAGAAGGGAAAACTGAGATGCAAGATAATCAAGTTTCCAAAGAGACTGCCGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAATGGTTGGACCTCTACTTTCTTCAGGTATGACCACATCACTGGAACTGAGGAACCCTTCGCCTATTTCCACCAGTGTTCCACAGCCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGGTACTGTAAGATTTTAGTTCTACTAATGTTTCATTTCTCACATCTAGTACATTAGAGATTCTTTTGAATCACACAACAATAATGCAGCATCCTTGTCTTTTACTGACACTAAAGTAATTCTTGGTCTGAATTCCTTAGAATGAGAGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGATCCAGGCTTAGGCTTAGGAAGCAAGTATGATTTGATGCAAATTTGCAATTTTTGTTTCACGTGTTCGTGTTTTTTTATTTGTCACGTGTTTTTATGGGTTTGTTTGGATTGGCTAATTTGAGCTTATCAACTAACATAAACACATATGAGACTGTTCGGAAGAGCATATAGAACCAGCGTATGGCATGGCCATAAGCTCTTTTCAGCTTATTTCCATAAGCTCTTCAGGATAGTTTATGAAAACAACTTATAGAATATGGAAACAATTTGACTTTAATTTATCTTTTGCTATAGTAGTTTATACATAAACACTTATATGATGAACATTTATGCTACAAGCACTCAGTTAAGTTGTTTATCCAAACACGGCCCTGATGCATGTACATGTAGCCCTTGAAAGAAAATGTTATCACAAAAGGAAAGTTCATGACAAACGTTCTTATCTCCTCTATACAGGCTGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCCGAGAATTTGGTGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCTGAGAAGCTGAAGATTGAAAATGCTACATTAAAGATAATGCACACATAA

Protein sequence

>MS.gene50039.t1

MKMFANVINRPMEHQQPLMEKGKLRCKIIKFPKRLPLPKRRCQLSQPVLQKMVGPLLSSGMTTSLELRNPSPISTSVPQPCGVLPPEAWMQNESELKRERRKQSNRESARRSRLRLRKQAEAEELARRVDALTAENLVLKSEMNELAENSEKLKIENATLKIMHT