Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50205.t1 | XP_024640279.1 | 95.5 | 1086 | 47 | 2 | 1 | 1086 | 1 | 1084 | 0.00E+00 | 2059.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50205.t1 | P93028 | 83.4 | 1004 | 167 | 0 | 83 | 1086 | 77 | 1080 | 0.0e+00 | 1738.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50205.t1 | A0A396HXC5 | 95.5 | 1086 | 47 | 2 | 1 | 1086 | 1 | 1084 | 0.0e+00 | 2059.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070761 | MS.gene50205 | PPI |
| MS.gene070760 | MS.gene50205 | PPI |
| MS.gene006731 | MS.gene50205 | PPI |
| MS.gene045436 | MS.gene50205 | PPI |
| MS.gene070758 | MS.gene50205 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50205.t1 | MTR_5g072480 | 97.698 | 1086 | 22 | 2 | 1 | 1086 | 97 | 1179 | 0.0 | 2194 |
| MS.gene50205.t1 | MTR_5g072480 | 97.698 | 1086 | 22 | 2 | 1 | 1086 | 98 | 1180 | 0.0 | 2192 |
| MS.gene50205.t1 | MTR_5g072480 | 98.763 | 970 | 12 | 0 | 117 | 1086 | 27 | 996 | 0.0 | 1998 |
| MS.gene50205.t1 | MTR_5g057095 | 85.390 | 705 | 58 | 3 | 287 | 991 | 1 | 660 | 0.0 | 1194 |
| MS.gene50205.t1 | MTR_8g037355 | 40.761 | 184 | 101 | 2 | 496 | 679 | 6 | 181 | 2.36e-34 | 141 |
| MS.gene50205.t1 | MTR_4g131690 | 32.850 | 207 | 111 | 7 | 489 | 678 | 37 | 232 | 1.84e-22 | 102 |
| MS.gene50205.t1 | MTR_5g093580 | 28.571 | 168 | 108 | 5 | 468 | 632 | 57 | 215 | 1.26e-13 | 75.1 |
| MS.gene50205.t1 | MTR_8g096740 | 34.395 | 157 | 97 | 3 | 83 | 233 | 15 | 171 | 1.75e-13 | 72.8 |
| MS.gene50205.t1 | MTR_8g096740 | 34.395 | 157 | 97 | 3 | 83 | 233 | 71 | 227 | 3.24e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50205.t1 | AT5G06460 | 81.977 | 1032 | 184 | 1 | 56 | 1085 | 45 | 1076 | 0.0 | 1798 |
| MS.gene50205.t1 | AT2G30110 | 80.336 | 1073 | 210 | 1 | 15 | 1086 | 8 | 1080 | 0.0 | 1796 |
| MS.gene50205.t1 | AT2G21470 | 39.474 | 190 | 107 | 2 | 490 | 679 | 4 | 185 | 3.41e-33 | 137 |
| MS.gene50205.t1 | AT2G21470 | 39.474 | 190 | 107 | 2 | 490 | 679 | 4 | 185 | 3.93e-33 | 137 |
| MS.gene50205.t1 | AT2G21470 | 39.474 | 190 | 107 | 2 | 490 | 679 | 4 | 185 | 6.18e-33 | 137 |
| MS.gene50205.t1 | AT5G19180 | 31.100 | 209 | 116 | 7 | 487 | 678 | 34 | 231 | 2.42e-21 | 99.0 |
| MS.gene50205.t1 | AT5G19180 | 30.918 | 207 | 115 | 7 | 489 | 678 | 36 | 231 | 2.61e-21 | 98.2 |
| MS.gene50205.t1 | AT5G50680 | 32.704 | 159 | 97 | 3 | 83 | 233 | 13 | 169 | 6.93e-14 | 74.7 |
| MS.gene50205.t1 | AT5G50580 | 32.704 | 159 | 97 | 3 | 83 | 233 | 13 | 169 | 6.93e-14 | 74.7 |
| MS.gene50205.t1 | AT5G50680 | 32.704 | 159 | 97 | 3 | 83 | 233 | 13 | 169 | 7.77e-14 | 74.3 |
| MS.gene50205.t1 | AT5G50580 | 32.704 | 159 | 97 | 3 | 83 | 233 | 13 | 169 | 7.77e-14 | 74.3 |
| MS.gene50205.t1 | AT4G24940 | 31.210 | 157 | 102 | 2 | 83 | 233 | 13 | 169 | 7.37e-13 | 71.6 |
| MS.gene50205.t1 | AT5G55130 | 31.447 | 159 | 90 | 5 | 480 | 632 | 71 | 216 | 6.85e-12 | 69.7 |
Find 254 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTTCATCCACTGTTTC+AGG | 0.145935 | 5.2:-60725186 | MS.gene50205:intron |
| CAGATTCAAGAAGTGGTTTC+TGG | 0.150804 | 5.2:+60723956 | None:intergenic |
| TTTAAAGAATCTTGCCTTAA+TGG | 0.185243 | 5.2:-60724280 | MS.gene50205:CDS |
| GCATCGTAACGACTATTTAT+TGG | 0.188335 | 5.2:+60724393 | None:intergenic |
| GCGAGTAGTGTTCTTGTTTC+CGG | 0.221823 | 5.2:-60729164 | MS.gene50205:CDS |
| CTTGATTGGCTGAAGGAAAA+AGG | 0.223345 | 5.2:-60722492 | MS.gene50205:CDS |
| TGATGAGAGACTTGAGTTTC+AGG | 0.227229 | 5.2:-60725726 | MS.gene50205:CDS |
| AGTAATATTAATGGGAATTT+AGG | 0.228702 | 5.2:-60725341 | MS.gene50205:CDS |
| CAGAAACCACTTCTTGAATC+TGG | 0.245740 | 5.2:-60723955 | MS.gene50205:CDS |
| TCTATCGCCAGTAATATTAA+TGG | 0.258312 | 5.2:-60725350 | MS.gene50205:CDS |
| ACAACTTCTGCCAACTTCAT+AGG | 0.264036 | 5.2:+60723259 | None:intergenic |
| TGATGCTTGATGACCTTTGC+TGG | 0.276583 | 5.2:+60722579 | None:intergenic |
| TTTATTAAAACTGAAGTTAG+AGG | 0.276986 | 5.2:-60725878 | MS.gene50205:CDS |
| GTTCAAAACCTTTGGTTGTT+TGG | 0.277118 | 5.2:+60725547 | None:intergenic |
| CCTTCACTAAGTCTCTTTCT+TGG | 0.277621 | 5.2:+60729458 | None:intergenic |
| ATGTGTTTCATGATACCTTT+TGG | 0.278407 | 5.2:-60724056 | MS.gene50205:CDS |
| GCCTTCAGCTTGTCAACTTC+AGG | 0.281009 | 5.2:+60722774 | None:intergenic |
| GAAATTAGAAAGTTGTTCTT+TGG | 0.281989 | 5.2:+60727599 | None:intergenic |
| TAAATTCCCATTAATATTAC+TGG | 0.282514 | 5.2:+60725343 | None:intergenic |
| AAAGTGTTTGTTGTTGGTTC+TGG | 0.291089 | 5.2:-60724321 | MS.gene50205:CDS |
| AACAGCTCAACGGAAATAAA+TGG | 0.294987 | 5.2:+60722266 | None:intergenic |
| CTCTTCCGTGATTGGAATAT+TGG | 0.300320 | 5.2:-60724177 | MS.gene50205:CDS |
| AGAACAACTTTCTAATTTCC+AGG | 0.301087 | 5.2:-60727595 | MS.gene50205:intron |
| AACTATGGTGCATATGAAAA+AGG | 0.303743 | 5.2:-60725587 | MS.gene50205:CDS |
| TGCTCAAGCAAGGGATAATT+TGG | 0.306523 | 5.2:-60723683 | MS.gene50205:CDS |
| TTAAAGAATCTTGCCTTAAT+GGG | 0.306714 | 5.2:-60724279 | MS.gene50205:CDS |
| CGAGTAGTGTTCTTGTTTCC+GGG | 0.310389 | 5.2:-60729163 | MS.gene50205:CDS |
| AAGACTTGAGTTGGACTGTT+TGG | 0.310519 | 5.2:-60722557 | MS.gene50205:CDS |
| GTTGTGTTCTCTGAAGTTCA+TGG | 0.325776 | 5.2:-60725692 | MS.gene50205:CDS |
| GGCCACTGGCCTTGTCTGTC+TGG | 0.330511 | 5.2:-60722700 | MS.gene50205:CDS |
| TTTGACTGCGGCATCGAGTA+TGG | 0.334015 | 5.2:-60729279 | MS.gene50205:CDS |
| TCATTGAGTGCTTCCCTTAG+AGG | 0.337735 | 5.2:+60725518 | None:intergenic |
| TGTTGTTGGTTCTGGTGCAC+TGG | 0.338371 | 5.2:-60724313 | MS.gene50205:CDS |
| TACCATATGGACGTGATTGC+TGG | 0.342218 | 5.2:-60722831 | MS.gene50205:CDS |
| TATACCTTCTCAAACTGAAT+TGG | 0.344295 | 5.2:+60723064 | None:intergenic |
| TTGGTATCCCTACCCCTGAC+TGG | 0.344953 | 5.2:-60723291 | MS.gene50205:CDS |
| TTGATGACCTTTGCTGGAAC+TGG | 0.346675 | 5.2:+60722585 | None:intergenic |
| CACATCGGTGCTTGTTTCTC+AGG | 0.349050 | 5.2:+60723856 | None:intergenic |
| GGCTTCTGTCAGTAAGCTTC+AGG | 0.352053 | 5.2:-60727667 | MS.gene50205:CDS |
| GGCAGTTCCTCTTCCGTGAT+TGG | 0.352745 | 5.2:-60724185 | MS.gene50205:CDS |
| CAAATCTGCTACCAGGCTTC+AGG | 0.353523 | 5.2:-60723093 | MS.gene50205:CDS |
| TGATGATCTAATTGTTAAGT+TGG | 0.354367 | 5.2:-60723128 | MS.gene50205:CDS |
| AACCCTATGGCTGCCATGTT+TGG | 0.355017 | 5.2:-60725248 | MS.gene50205:CDS |
| GCAAAGAATCTTATTCTTGC+TGG | 0.359597 | 5.2:-60727792 | MS.gene50205:CDS |
| AGACTTGAGTTGGACTGTTT+GGG | 0.362387 | 5.2:-60722556 | MS.gene50205:CDS |
| GCGGCATCGAGTATGGCTTT+TGG | 0.364361 | 5.2:-60729272 | MS.gene50205:CDS |
| CTGAAGGCCAAGTTTATTGC+TGG | 0.364675 | 5.2:-60722759 | MS.gene50205:CDS |
| CTCTCAGGGAGCTTCTTGAT+TGG | 0.364777 | 5.2:-60722506 | MS.gene50205:CDS |
| TTCATATGCACCATAGTTTG+TGG | 0.370748 | 5.2:+60725592 | None:intergenic |
| CTATCGCCAGTAATATTAAT+GGG | 0.371055 | 5.2:-60725349 | MS.gene50205:CDS |
| CTTCTACAGCAATTTGCCTT+TGG | 0.378864 | 5.2:-60725287 | MS.gene50205:CDS |
| TCCTTCTTTGGCTGAAAGTC+AGG | 0.379261 | 5.2:+60723220 | None:intergenic |
| TCTACTGCATCTAGCATTCC+AGG | 0.380310 | 5.2:-60725447 | MS.gene50205:CDS |
| CTTCTTGAATCTGGAACTCT+TGG | 0.385963 | 5.2:-60723946 | MS.gene50205:CDS |
| GTTTCCGGGATGCGAGGACT+TGG | 0.393100 | 5.2:-60729149 | MS.gene50205:CDS |
| AAATATGCATTTACTTCAGC+TGG | 0.393678 | 5.2:+60723751 | None:intergenic |
| TCCACAAGAAACTCCCATTA+AGG | 0.397211 | 5.2:+60724266 | None:intergenic |
| AGCAGGCAGCTTGCTGTGTA+TGG | 0.400305 | 5.2:-60729212 | MS.gene50205:CDS |
| CGTTTCGGTGCAGACCAAAA+TGG | 0.402314 | 5.2:+60723400 | None:intergenic |
| GAAGAAGACACCACAAACTA+TGG | 0.406363 | 5.2:-60725602 | MS.gene50205:CDS |
| TAGAGGCTGCCATCAGAAAC+TGG | 0.408365 | 5.2:+60723332 | None:intergenic |
| GATAAGTTCATTTCTGAGAT+AGG | 0.408784 | 5.2:-60725419 | MS.gene50205:CDS |
| CTAAGTTGGCAAAGGTGTTT+CGG | 0.417033 | 5.2:+60722634 | None:intergenic |
| GGCAAATTGCTGTAGAAGCT+TGG | 0.417666 | 5.2:+60725292 | None:intergenic |
| TTGGGCTCGATCTGAGTTTG+AGG | 0.418168 | 5.2:-60723791 | MS.gene50205:CDS |
| TCTGGAGTTGTACAAAGCTT+TGG | 0.419529 | 5.2:-60722682 | MS.gene50205:CDS |
| GGTTTGAAGTTCAAAACCTT+TGG | 0.419591 | 5.2:+60725539 | None:intergenic |
| ACATTGACCACTGCTTGACT+TGG | 0.423197 | 5.2:-60723810 | MS.gene50205:CDS |
| GCAGTTGAGGTTGCAATCGC+TGG | 0.425831 | 5.2:+60722726 | None:intergenic |
| ATGAAGGGACTGTAGAGTTA+TGG | 0.426761 | 5.2:-60727746 | MS.gene50205:CDS |
| TGAAGGGACTGTAGAGTTAT+GGG | 0.430566 | 5.2:-60727745 | MS.gene50205:CDS |
| GTTGTTGGTTCTGGTGCACT+GGG | 0.430831 | 5.2:-60724312 | MS.gene50205:CDS |
| CTAGTACTGGAGCTCCATTT+TGG | 0.431384 | 5.2:-60723414 | MS.gene50205:CDS |
| ATACTACGCGCAGAAACATT+TGG | 0.432473 | 5.2:-60723310 | MS.gene50205:CDS |
| TTAGGTGGGGAATGACCATC+TGG | 0.432952 | 5.2:+60723908 | None:intergenic |
| GAGGTTGTCAAAGCATGCTC+TGG | 0.433486 | 5.2:-60725209 | MS.gene50205:CDS |
| GTATGAAGGGATTTCCATCT+TGG | 0.433617 | 5.2:+60722359 | None:intergenic |
| GCAAATTGCTGTAGAAGCTT+GGG | 0.434219 | 5.2:+60725293 | None:intergenic |
| TCTCAGAAATGAACTTATCC+AGG | 0.437517 | 5.2:+60725423 | None:intergenic |
| AGCAATTTGCCTTTGGTGCT+AGG | 0.439721 | 5.2:-60725280 | MS.gene50205:CDS |
| ACTCTTGTCACTCTCGTTCA+CGG | 0.440613 | 5.2:+60729343 | None:intergenic |
| CAGCAACTGTGGACTTCGCC+TGG | 0.443178 | 5.2:+60724154 | None:intergenic |
| AGTGGACGAGGGAACCGTTT+CGG | 0.444508 | 5.2:+60723385 | None:intergenic |
| GCCTTAATGGGAGTTTCTTG+TGG | 0.450723 | 5.2:-60724267 | MS.gene50205:CDS |
| ATAGGCCGCTTCCCCGTCGC+TGG | 0.451628 | 5.2:-60725401 | MS.gene50205:CDS |
| TAAAAGACAATCCTACTCTC+AGG | 0.451668 | 5.2:-60722521 | MS.gene50205:CDS |
| GGAGCGCGTTCTTGAATGCT+TGG | 0.453147 | 5.2:-60723662 | MS.gene50205:CDS |
| TGGGCTCGATCTGAGTTTGA+GGG | 0.454796 | 5.2:-60723790 | MS.gene50205:CDS |
| TCTGTAACCTTGCACGATGA+AGG | 0.460758 | 5.2:-60727762 | MS.gene50205:CDS |
| CCGTGATTGGAATATTGGCC+AGG | 0.460888 | 5.2:-60724172 | MS.gene50205:CDS |
| CAACTTCTGCCAACTTCATA+GGG | 0.461246 | 5.2:+60723260 | None:intergenic |
| CGATGCCGCAGTCAAATTCC+CGG | 0.461721 | 5.2:+60729286 | None:intergenic |
| GATGCTAAAGTGTTTGTTGT+TGG | 0.462634 | 5.2:-60724327 | MS.gene50205:CDS |
| GCCCAGCAATCACGTCCATA+TGG | 0.464394 | 5.2:+60722829 | None:intergenic |
| CGAGGACTTGGTGCTGAGAT+TGG | 0.465948 | 5.2:-60729137 | MS.gene50205:intron |
| GCCATGTTTGGTGGAATTGT+AGG | 0.467732 | 5.2:-60725236 | MS.gene50205:CDS |
| GAGCTTCAATATTCAGTTGA+GGG | 0.468390 | 5.2:+60724109 | None:intergenic |
| TCCATCCGCTCTTTGTGCCT+AGG | 0.470744 | 5.2:+60722414 | None:intergenic |
| GCAATTTGCCTTTGGTGCTA+GGG | 0.471795 | 5.2:-60725279 | MS.gene50205:CDS |
| AAAGAGAGGCAGTGCTAAGT+TGG | 0.472731 | 5.2:+60722620 | None:intergenic |
| TCTTCCTCTGAACCAGCGAC+GGG | 0.473013 | 5.2:+60725389 | None:intergenic |
| GACGGAGAGGAACCACATAC+TGG | 0.474327 | 5.2:-60725800 | MS.gene50205:CDS |
| GAAACATGCTATTGAAAAGC+AGG | 0.474711 | 5.2:+60722436 | None:intergenic |
| CAAGCAAACATACTTAAGTC+TGG | 0.475068 | 5.2:+60723597 | None:intergenic |
| GGAAATAAATGGATACTTGA+GGG | 0.475547 | 5.2:+60722277 | None:intergenic |
| GAGGAGAACTGCAGTGGACG+AGG | 0.475825 | 5.2:+60723373 | None:intergenic |
| AAATGAACTTATCCAGGGCC+TGG | 0.478545 | 5.2:+60725429 | None:intergenic |
| GAGGATGCTGCAACTAGTAC+TGG | 0.479266 | 5.2:-60723427 | MS.gene50205:CDS |
| CGACTTAGGTTCTGTTAAGA+AGG | 0.480387 | 5.2:-60729384 | MS.gene50205:CDS |
| GAAGTGGTTTCTGGAAATAC+AGG | 0.480601 | 5.2:+60723965 | None:intergenic |
| TTGATGAGGATCTGCATAGC+AGG | 0.483115 | 5.2:-60729229 | MS.gene50205:CDS |
| TTTGAACTTCAAACCTCTAA+GGG | 0.484104 | 5.2:-60725531 | MS.gene50205:CDS |
| TGATGATACAAACTACCATA+TGG | 0.487832 | 5.2:-60722844 | MS.gene50205:CDS |
| TTCTGTTAAGAAGGCGCGGA+TGG | 0.488070 | 5.2:-60729375 | MS.gene50205:CDS |
| ATCAGAAACTGGAGATGACT+TGG | 0.488848 | 5.2:+60723343 | None:intergenic |
| CACAGAAGCAGTAGAGAGAC+TGG | 0.489594 | 5.2:+60723168 | None:intergenic |
| CAGTCTCTCTACTGCTTCTG+TGG | 0.491243 | 5.2:-60723167 | MS.gene50205:CDS |
| GGAGTTTCTTGTGGAGGTCA+AGG | 0.491274 | 5.2:-60724258 | MS.gene50205:CDS |
| GCATCTAGCATTCCAGGCCC+TGG | 0.491544 | 5.2:-60725441 | MS.gene50205:CDS |
| CCCCACCTAACAGAAAACTA+TGG | 0.494247 | 5.2:-60723895 | MS.gene50205:CDS |
| AGCAAGGGATATTGCCAAGA+TGG | 0.494470 | 5.2:-60722373 | MS.gene50205:CDS |
| TAGAGAAGAGTAACTTAAGC+AGG | 0.497531 | 5.2:-60724206 | MS.gene50205:CDS |
| ATTAGTATATTCACTTGGGT+TGG | 0.501780 | 5.2:+60723726 | None:intergenic |
| TTTACTGTTGTTGATGTTGA+CGG | 0.502308 | 5.2:-60725818 | MS.gene50205:CDS |
| CCACCAAACATGGCAGCCAT+AGG | 0.502484 | 5.2:+60725245 | None:intergenic |
| GAATTTAGGTGATGGAAGGT+TGG | 0.502910 | 5.2:-60725327 | MS.gene50205:CDS |
| TGTTTCTGCGCGTAGTATAG+AGG | 0.504143 | 5.2:+60723315 | None:intergenic |
| TCAAGCATCAAGACTTGAGT+TGG | 0.506455 | 5.2:-60722566 | MS.gene50205:CDS |
| GTACTAGTTGCAGCATCCTC+AGG | 0.507340 | 5.2:+60723430 | None:intergenic |
| ACCATATGGACGTGATTGCT+GGG | 0.507365 | 5.2:-60722830 | MS.gene50205:CDS |
| AGAGTTCCAGATTCAAGAAG+TGG | 0.510671 | 5.2:+60723949 | None:intergenic |
| ACCTCAACTGCTATGGCCAC+TGG | 0.513534 | 5.2:-60722714 | MS.gene50205:CDS |
| TTTCTCAGGTGGATCTCTTG+AGG | 0.516110 | 5.2:+60723870 | None:intergenic |
| CCTATGGCTGCCATGTTTGG+TGG | 0.517240 | 5.2:-60725245 | MS.gene50205:CDS |
| TTTAAATCATTAGGATGCAA+TGG | 0.518509 | 5.2:+60724417 | None:intergenic |
| CTGAACCAGCGACGGGGAAG+CGG | 0.519190 | 5.2:+60725396 | None:intergenic |
| CATTGACCACTGCTTGACTT+GGG | 0.525222 | 5.2:-60723809 | MS.gene50205:CDS |
| GTTGGACTGTTTGGGACAGA+TGG | 0.525287 | 5.2:-60722548 | MS.gene50205:CDS |
| AGCAGGGTTGTCATTGCTGA+TGG | 0.525509 | 5.2:+60725766 | None:intergenic |
| TCTATGTGACGACGGTATGA+AGG | 0.525866 | 5.2:+60722345 | None:intergenic |
| TGGTATCCCTACCCCTGACT+GGG | 0.529089 | 5.2:-60723290 | MS.gene50205:CDS |
| AGTAACAGTAACAACGACTT+AGG | 0.530616 | 5.2:-60729398 | MS.gene50205:CDS |
| CTTCCCCGTCGCTGGTTCAG+AGG | 0.532088 | 5.2:-60725393 | MS.gene50205:CDS |
| AGGGAAGCACTCAATGATCC+TGG | 0.532641 | 5.2:-60725512 | MS.gene50205:CDS |
| GACGCAATTATTCCAGTATG+TGG | 0.534184 | 5.2:+60725788 | None:intergenic |
| TTGCATTAGTATATTCACTT+GGG | 0.538332 | 5.2:+60723722 | None:intergenic |
| TGTACAAAGCTTTGGATGGA+GGG | 0.538756 | 5.2:-60722674 | MS.gene50205:CDS |
| CGGAAATAAATGGATACTTG+AGG | 0.538825 | 5.2:+60722276 | None:intergenic |
| GGCAGCTTGCTGTGTATGGT+AGG | 0.539353 | 5.2:-60729208 | MS.gene50205:CDS |
| ATTAATGGGAATTTAGGTGA+TGG | 0.540459 | 5.2:-60725335 | MS.gene50205:CDS |
| ATTGCATTAGTATATTCACT+TGG | 0.541152 | 5.2:+60723721 | None:intergenic |
| ATGGGAATTTAGGTGATGGA+AGG | 0.541258 | 5.2:-60725331 | MS.gene50205:CDS |
| GCCAGTGGCCATAGCAGTTG+AGG | 0.541357 | 5.2:+60722713 | None:intergenic |
| ACCTGACTTTCAGCCAAAGA+AGG | 0.541490 | 5.2:-60723221 | MS.gene50205:CDS |
| TGCTGGAACTGGCTCAGCCA+TGG | 0.542249 | 5.2:+60722596 | None:intergenic |
| ATCGGTGCTTGTTTCTCAGG+TGG | 0.542256 | 5.2:+60723859 | None:intergenic |
| TGAAGGCCAAGTTTATTGCT+GGG | 0.544977 | 5.2:-60722758 | MS.gene50205:CDS |
| AGCACCAAGTCCTCGCATCC+CGG | 0.545712 | 5.2:+60729145 | None:intergenic |
| CGTTCTTGAATGCTTGGACA+AGG | 0.549794 | 5.2:-60723656 | MS.gene50205:CDS |
| CAATATTCCAATCACGGAAG+AGG | 0.549876 | 5.2:+60724178 | None:intergenic |
| AACATACTTAAGTCTGGCCC+AGG | 0.550964 | 5.2:+60723603 | None:intergenic |
| TTAATGGGAGTTTCTTGTGG+AGG | 0.551450 | 5.2:-60724264 | MS.gene50205:CDS |
| AGCTTTCTCAAGACTGACTT+CGG | 0.552709 | 5.2:+60725946 | None:intergenic |
| GATCCGCCCAGCAATAAACT+TGG | 0.553499 | 5.2:+60722752 | None:intergenic |
| ATCTTCCTCTGAACCAGCGA+CGG | 0.553654 | 5.2:+60725388 | None:intergenic |
| AATGCTTATAGTATTTCTTG+TGG | 0.555880 | 5.2:-60722465 | MS.gene50205:CDS |
| CTGTAACCTTGCACGATGAA+GGG | 0.556726 | 5.2:-60727761 | MS.gene50205:CDS |
| TCCTACAATTCCACCAAACA+TGG | 0.558580 | 5.2:+60725235 | None:intergenic |
| TCGCTAAGAAGAAATTCGCC+AGG | 0.558615 | 5.2:+60725494 | None:intergenic |
| AACAGTAACAGTAACAGCAC+CGG | 0.558645 | 5.2:-60729305 | MS.gene50205:CDS |
| CACCAAACATGGCAGCCATA+GGG | 0.558852 | 5.2:+60725246 | None:intergenic |
| TACAGTCCCTTCATCGTGCA+AGG | 0.559502 | 5.2:+60727755 | None:intergenic |
| GATTGCAACCTCAACTGCTA+TGG | 0.560816 | 5.2:-60722721 | MS.gene50205:CDS |
| TTGTACAAAGCTTTGGATGG+AGG | 0.561407 | 5.2:-60722675 | MS.gene50205:CDS |
| ATTGGCTTCATCCTGAAGCC+TGG | 0.563639 | 5.2:+60723082 | None:intergenic |
| GAGTTGTACAAAGCTTTGGA+TGG | 0.564658 | 5.2:-60722678 | MS.gene50205:CDS |
| GGAGCTTCTTGATTGGCTGA+AGG | 0.564907 | 5.2:-60722499 | MS.gene50205:CDS |
| CAATACTGCCCTAGCACCAA+AGG | 0.568311 | 5.2:+60725271 | None:intergenic |
| GGCTGAGCCAGTTCCAGCAA+AGG | 0.569400 | 5.2:-60722592 | MS.gene50205:CDS |
| TTGTTAAGTTGGAGAGATTG+CGG | 0.569445 | 5.2:-60723117 | MS.gene50205:CDS |
| ATATCAAATACCTGAAACAG+TGG | 0.571836 | 5.2:+60725176 | None:intergenic |
| TCAACGCAAGATACTACAGC+AGG | 0.572004 | 5.2:+60725749 | None:intergenic |
| ACGCTGGTGATGCTCAAGCA+AGG | 0.575260 | 5.2:-60723693 | MS.gene50205:CDS |
| CTGGAGATGACTTGGATCAG+AGG | 0.578510 | 5.2:+60723351 | None:intergenic |
| TTGCGGTCAAATCTGCTACC+AGG | 0.579074 | 5.2:-60723100 | MS.gene50205:CDS |
| GAGTTTCTTGTGGAGGTCAA+GGG | 0.579278 | 5.2:-60724257 | MS.gene50205:CDS |
| CTATGTGACGACGGTATGAA+GGG | 0.583308 | 5.2:+60722346 | None:intergenic |
| AGGTTGTCAAAGCATGCTCT+GGG | 0.583903 | 5.2:-60725208 | MS.gene50205:CDS |
| AAAAGACAATCCTACTCTCA+GGG | 0.588461 | 5.2:-60722520 | MS.gene50205:CDS |
| GTTCTTGTTTCCGGGATGCG+AGG | 0.588608 | 5.2:-60729155 | MS.gene50205:CDS |
| AGGCAGTGCTAAGTTGGCAA+AGG | 0.588629 | 5.2:+60722626 | None:intergenic |
| AAGTCATCTCCAGTTTCTGA+TGG | 0.589571 | 5.2:-60723341 | MS.gene50205:CDS |
| TCCTAGGCACAAAGAGCGGA+TGG | 0.590716 | 5.2:-60722415 | MS.gene50205:CDS |
| AAAAGTTGTAGATTTAGCAA+GGG | 0.591947 | 5.2:-60722388 | MS.gene50205:CDS |
| CGCTGGTGATGCTCAAGCAA+GGG | 0.592180 | 5.2:-60723692 | MS.gene50205:CDS |
| CCTGGCCAATATTCCAATCA+CGG | 0.596475 | 5.2:+60724172 | None:intergenic |
| TGGTGGAATTGTAGGACAAG+AGG | 0.596531 | 5.2:-60725228 | MS.gene50205:CDS |
| GCAGCTTGCTGTGTATGGTA+GGG | 0.598555 | 5.2:-60729207 | MS.gene50205:CDS |
| CACACAGGCCAAACAACCAA+AGG | 0.598610 | 5.2:-60725555 | MS.gene50205:CDS |
| TCTGTTAAGAAGGCGCGGAT+GGG | 0.598951 | 5.2:-60729374 | MS.gene50205:CDS |
| TCGTCACATAGATGTTGTTG+TGG | 0.599771 | 5.2:-60722334 | MS.gene50205:CDS |
| TTAGGATGCAATGGTTCTGT+CGG | 0.600075 | 5.2:+60724426 | None:intergenic |
| GAAGCCAATTCAGTTTGAGA+AGG | 0.601502 | 5.2:-60723068 | MS.gene50205:intron |
| AGCTAAATGCAATACCCAGA+TGG | 0.602057 | 5.2:-60723923 | MS.gene50205:CDS |
| AGAGCTTCAATATTCAGTTG+AGG | 0.602807 | 5.2:+60724108 | None:intergenic |
| ATGCTAGATGCAGTAGAGGT+GGG | 0.606083 | 5.2:+60725453 | None:intergenic |
| TCAAGAAGCTCCCTGAGAGT+AGG | 0.607687 | 5.2:+60722510 | None:intergenic |
| AATGCTAGATGCAGTAGAGG+TGG | 0.608189 | 5.2:+60725452 | None:intergenic |
| TAGGGCAGTATTGAACCCTA+TGG | 0.608225 | 5.2:-60725261 | MS.gene50205:CDS |
| TGTATGGTAGGGAGACTATG+AGG | 0.608486 | 5.2:-60729196 | MS.gene50205:CDS |
| CCAAGAAAGAGACTTAGTGA+AGG | 0.609360 | 5.2:-60729458 | MS.gene50205:CDS |
| AGATGTTGTTGTGGCTTGTG+AGG | 0.611793 | 5.2:-60722325 | MS.gene50205:CDS |
| TCCTGAAGTTGACAAGCTGA+AGG | 0.613866 | 5.2:-60722775 | MS.gene50205:CDS |
| CTCAGAAATGAACTTATCCA+GGG | 0.613872 | 5.2:+60725424 | None:intergenic |
| GGTATGAAAGAGTTGAATGA+CGG | 0.614542 | 5.2:-60725671 | MS.gene50205:CDS |
| TGGAATGCTAGATGCAGTAG+AGG | 0.618576 | 5.2:+60725449 | None:intergenic |
| AGCAGCTGTTGCAGCAACTG+TGG | 0.622684 | 5.2:+60724143 | None:intergenic |
| GTAATTGCGTGCTCTCATGT+TGG | 0.625010 | 5.2:+60722803 | None:intergenic |
| TAGGTTCTGTTAAGAAGGCG+CGG | 0.626293 | 5.2:-60729379 | MS.gene50205:CDS |
| TCAGAGGAGGAGAACTGCAG+TGG | 0.627364 | 5.2:+60723367 | None:intergenic |
| ACTAATGCAATGAAGAACGC+TGG | 0.628383 | 5.2:-60723709 | MS.gene50205:CDS |
| ACAGTAACAGTAACAGCACC+GGG | 0.632524 | 5.2:-60729304 | MS.gene50205:CDS |
| GGATGGAGGGCACAAACTCG+AGG | 0.634174 | 5.2:-60722661 | MS.gene50205:CDS |
| ATCGAGCCCAAGTCAAGCAG+TGG | 0.639227 | 5.2:+60723803 | None:intergenic |
| AAAAGGTGGTATTGTCACAC+AGG | 0.640867 | 5.2:-60725570 | MS.gene50205:CDS |
| GAGAGACTTGAGTTTCAGGA+CGG | 0.642912 | 5.2:-60725722 | MS.gene50205:CDS |
| TATAAGCTAACTGCTTCACT+CGG | 0.644091 | 5.2:+60723458 | None:intergenic |
| AGGAGAACTGCAGTGGACGA+GGG | 0.645043 | 5.2:+60723374 | None:intergenic |
| TTTCAGTTTCAGAGCTAACA+CGG | 0.652120 | 5.2:+60724079 | None:intergenic |
| TGTCAAGCTTAGTACAAGCA+CGG | 0.654017 | 5.2:+60727632 | None:intergenic |
| GAGATGACTTGGATCAGAGG+AGG | 0.659455 | 5.2:+60723354 | None:intergenic |
| GGCTCAGCCATGGAAAAGAG+AGG | 0.660682 | 5.2:+60722606 | None:intergenic |
| CAACAACATCTATGTGACGA+CGG | 0.662935 | 5.2:+60722337 | None:intergenic |
| TGTGAATGCAAGACTATACG+TGG | 0.663201 | 5.2:-60723998 | MS.gene50205:CDS |
| CAATAGGAGGCTGATGACTG+TGG | 0.671941 | 5.2:+60725903 | None:intergenic |
| ACATCAACAACAGTAAACTC+AGG | 0.672812 | 5.2:+60725824 | None:intergenic |
| AAGCAGTGGTCAATGTTGTG+TGG | 0.675358 | 5.2:+60723817 | None:intergenic |
| TGTACAACTCCAGACAGACA+AGG | 0.675587 | 5.2:+60722691 | None:intergenic |
| TGTTTCCTAGGCACAAAGAG+CGG | 0.681256 | 5.2:-60722419 | MS.gene50205:CDS |
| CTTCCTCTGAACCAGCGACG+GGG | 0.682309 | 5.2:+60725390 | None:intergenic |
| TAGGTGGGGAATGACCATCT+GGG | 0.685278 | 5.2:+60723909 | None:intergenic |
| CTCCAGACAGACAAGGCCAG+TGG | 0.687437 | 5.2:+60722698 | None:intergenic |
| AAACTCGCAGGAGATTGATG+AGG | 0.689254 | 5.2:-60729243 | MS.gene50205:CDS |
| CTTGGACAAGGAGAAGTGTG+AGG | 0.693103 | 5.2:-60723644 | MS.gene50205:CDS |
| GTTGTGTGGAAATGAATGCA+CGG | 0.701496 | 5.2:+60723831 | None:intergenic |
| AGGCCAAGTTTATTGCTGGG+CGG | 0.703125 | 5.2:-60722755 | MS.gene50205:CDS |
| TGTTGTTGATGTTGACGGAG+AGG | 0.708009 | 5.2:-60725813 | MS.gene50205:CDS |
| GAACTTCAGAGAACACAACA+AGG | 0.710208 | 5.2:+60725696 | None:intergenic |
| CAACGCAAGATACTACAGCA+GGG | 0.714305 | 5.2:+60725750 | None:intergenic |
| AGTGACAAGAGTTTCAGTAG+CGG | 0.717098 | 5.2:-60729332 | MS.gene50205:CDS |
| AATGAATGCACGGTGCACAT+CGG | 0.731357 | 5.2:+60723841 | None:intergenic |
| TTGTTGGTTCTGGTGCACTG+GGG | 0.742108 | 5.2:-60724311 | MS.gene50205:CDS |
| ATGGTAGGGAGACTATGAGG+AGG | 0.751101 | 5.2:-60729193 | MS.gene50205:CDS |
| CAGCACCGGGAATTTGACTG+CGG | 0.755702 | 5.2:-60729291 | MS.gene50205:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 60722272 | 60729486 | 60722272 | ID=MS.gene50205 |
| chr5.2 | mRNA | 60722272 | 60729486 | 60722272 | ID=MS.gene50205.t1;Parent=MS.gene50205 |
| chr5.2 | exon | 60729138 | 60729486 | 60729138 | ID=MS.gene50205.t1.exon1;Parent=MS.gene50205.t1 |
| chr5.2 | CDS | 60729138 | 60729486 | 60729138 | ID=cds.MS.gene50205.t1;Parent=MS.gene50205.t1 |
| chr5.2 | exon | 60727596 | 60727813 | 60727596 | ID=MS.gene50205.t1.exon2;Parent=MS.gene50205.t1 |
| chr5.2 | CDS | 60727596 | 60727813 | 60727596 | ID=cds.MS.gene50205.t1;Parent=MS.gene50205.t1 |
| chr5.2 | exon | 60725187 | 60725981 | 60725187 | ID=MS.gene50205.t1.exon3;Parent=MS.gene50205.t1 |
| chr5.2 | CDS | 60725187 | 60725981 | 60725187 | ID=cds.MS.gene50205.t1;Parent=MS.gene50205.t1 |
| chr5.2 | exon | 60723610 | 60724478 | 60723610 | ID=MS.gene50205.t1.exon4;Parent=MS.gene50205.t1 |
| chr5.2 | CDS | 60723610 | 60724478 | 60723610 | ID=cds.MS.gene50205.t1;Parent=MS.gene50205.t1 |
| chr5.2 | exon | 60723069 | 60723501 | 60723069 | ID=MS.gene50205.t1.exon5;Parent=MS.gene50205.t1 |
| chr5.2 | CDS | 60723069 | 60723501 | 60723069 | ID=cds.MS.gene50205.t1;Parent=MS.gene50205.t1 |
| chr5.2 | exon | 60722272 | 60722868 | 60722272 | ID=MS.gene50205.t1.exon6;Parent=MS.gene50205.t1 |
| chr5.2 | CDS | 60722272 | 60722868 | 60722272 | ID=cds.MS.gene50205.t1;Parent=MS.gene50205.t1 |
| Gene Sequence |
| Protein sequence |