Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50407.t1 | AES87219.1 | 44.1 | 768 | 74 | 6 | 1 | 413 | 1 | 768 | 5.70E-142 | 514.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50407.t1 | Q7XA42 | 26.8 | 332 | 152 | 12 | 124 | 379 | 420 | 736 | 1.5e-13 | 79.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50407.t1 | G7JVR7 | 44.1 | 768 | 74 | 6 | 1 | 413 | 1 | 768 | 4.1e-142 | 514.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene50407 | 0.808935 | 2.43E-50 | -1.69E-46 |
| MS.gene049585 | MS.gene50407 | 0.821015 | 5.05E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene50407 | 0.8028 | 4.72E-49 | -1.69E-46 |
| MS.gene053189 | MS.gene50407 | 0.805066 | 1.60E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene50407 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene50407 | 0.811317 | 7.44E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50407.t1 | MTR_4g022540 | 85.897 | 156 | 21 | 1 | 252 | 407 | 659 | 813 | 1.06e-81 | 271 |
| MS.gene50407.t1 | MTR_4g022540 | 73.103 | 145 | 35 | 2 | 101 | 241 | 401 | 545 | 1.09e-58 | 207 |
| MS.gene50407.t1 | MTR_4g022540 | 82.540 | 126 | 18 | 1 | 1 | 122 | 1 | 126 | 1.13e-53 | 192 |
| MS.gene50407.t1 | MTR_4g022480 | 85.897 | 156 | 21 | 1 | 252 | 407 | 662 | 816 | 3.36e-81 | 270 |
| MS.gene50407.t1 | MTR_4g022480 | 66.242 | 157 | 50 | 1 | 101 | 254 | 401 | 557 | 3.68e-60 | 211 |
| MS.gene50407.t1 | MTR_4g022480 | 83.333 | 126 | 17 | 1 | 1 | 122 | 1 | 126 | 7.64e-53 | 190 |
| MS.gene50407.t1 | MTR_4g022960 | 81.410 | 156 | 29 | 0 | 252 | 407 | 607 | 762 | 4.96e-78 | 260 |
| MS.gene50407.t1 | MTR_4g022960 | 62.893 | 159 | 50 | 2 | 136 | 285 | 414 | 572 | 8.79e-56 | 198 |
| MS.gene50407.t1 | MTR_4g022960 | 84.127 | 126 | 16 | 1 | 1 | 122 | 1 | 126 | 5.05e-54 | 193 |
| MS.gene50407.t1 | MTR_4g022460 | 82.692 | 156 | 26 | 1 | 252 | 407 | 663 | 817 | 9.68e-78 | 260 |
| MS.gene50407.t1 | MTR_4g022460 | 66.667 | 162 | 49 | 3 | 93 | 250 | 394 | 554 | 2.36e-57 | 203 |
| MS.gene50407.t1 | MTR_4g022460 | 83.333 | 126 | 17 | 1 | 1 | 122 | 1 | 126 | 1.11e-52 | 190 |
| MS.gene50407.t1 | MTR_4g021690 | 81.481 | 162 | 27 | 2 | 252 | 413 | 664 | 822 | 4.19e-77 | 258 |
| MS.gene50407.t1 | MTR_4g021690 | 69.620 | 158 | 44 | 2 | 101 | 254 | 402 | 559 | 3.98e-62 | 217 |
| MS.gene50407.t1 | MTR_4g021690 | 78.571 | 126 | 23 | 1 | 1 | 122 | 1 | 126 | 2.38e-48 | 177 |
| MS.gene50407.t1 | MTR_4g022950 | 76.282 | 156 | 37 | 0 | 252 | 407 | 68 | 223 | 3.60e-73 | 235 |
| MS.gene50407.t1 | MTR_4g022560 | 75.000 | 156 | 39 | 0 | 252 | 407 | 664 | 819 | 1.93e-67 | 232 |
| MS.gene50407.t1 | MTR_4g022560 | 66.892 | 148 | 44 | 3 | 101 | 244 | 401 | 547 | 1.44e-53 | 192 |
| MS.gene50407.t1 | MTR_4g022560 | 80.159 | 126 | 21 | 1 | 1 | 122 | 1 | 126 | 1.89e-50 | 183 |
| MS.gene50407.t1 | MTR_8g043600 | 47.134 | 157 | 46 | 2 | 93 | 246 | 355 | 477 | 1.99e-30 | 123 |
| MS.gene50407.t1 | MTR_8g043600 | 53.763 | 93 | 32 | 2 | 31 | 122 | 13 | 95 | 1.75e-18 | 88.2 |
| MS.gene50407.t1 | MTR_4g022490 | 55.738 | 122 | 15 | 2 | 1 | 122 | 1 | 83 | 1.89e-23 | 95.1 |
| MS.gene50407.t1 | MTR_3g007190 | 26.163 | 344 | 196 | 10 | 119 | 412 | 354 | 689 | 9.36e-22 | 98.6 |
| MS.gene50407.t1 | MTR_3g015560 | 27.476 | 313 | 164 | 11 | 120 | 424 | 422 | 679 | 2.00e-20 | 94.4 |
| MS.gene50407.t1 | MTR_3g015560 | 40.000 | 120 | 66 | 2 | 3 | 118 | 2 | 119 | 2.20e-13 | 72.8 |
| MS.gene50407.t1 | MTR_3g015560 | 31.977 | 172 | 94 | 4 | 253 | 404 | 650 | 818 | 1.36e-12 | 70.1 |
| MS.gene50407.t1 | MTR_2g078070 | 40.541 | 148 | 78 | 5 | 119 | 263 | 437 | 577 | 3.18e-20 | 94.0 |
| MS.gene50407.t1 | MTR_2g078070 | 31.765 | 170 | 108 | 4 | 252 | 414 | 665 | 833 | 6.90e-15 | 77.4 |
| MS.gene50407.t1 | MTR_3g015500 | 41.322 | 121 | 62 | 4 | 120 | 238 | 460 | 573 | 2.73e-19 | 90.9 |
| MS.gene50407.t1 | MTR_3g015500 | 39.167 | 120 | 67 | 2 | 3 | 118 | 40 | 157 | 2.71e-16 | 81.6 |
| MS.gene50407.t1 | MTR_1g022380 | 25.333 | 375 | 178 | 10 | 122 | 407 | 423 | 784 | 3.95e-19 | 90.5 |
| MS.gene50407.t1 | MTR_4g050790 | 40.336 | 119 | 66 | 2 | 120 | 238 | 422 | 535 | 1.13e-18 | 89.0 |
| MS.gene50407.t1 | MTR_4g050790 | 38.333 | 120 | 68 | 2 | 3 | 118 | 2 | 119 | 2.89e-15 | 78.6 |
| MS.gene50407.t1 | MTR_4g050790 | 34.722 | 144 | 75 | 6 | 252 | 382 | 650 | 787 | 2.64e-11 | 66.2 |
| MS.gene50407.t1 | MTR_3g015550 | 40.336 | 119 | 66 | 2 | 120 | 238 | 422 | 535 | 1.33e-18 | 89.0 |
| MS.gene50407.t1 | MTR_3g015550 | 39.167 | 120 | 67 | 2 | 3 | 118 | 2 | 119 | 1.75e-12 | 69.7 |
| MS.gene50407.t1 | MTR_3g015550 | 32.402 | 179 | 89 | 7 | 252 | 404 | 650 | 822 | 3.24e-12 | 68.9 |
| MS.gene50407.t1 | MTR_3g015550 | 40.336 | 119 | 66 | 2 | 120 | 238 | 459 | 572 | 1.50e-18 | 88.6 |
| MS.gene50407.t1 | MTR_3g015550 | 38.525 | 122 | 69 | 2 | 1 | 118 | 37 | 156 | 1.25e-12 | 70.5 |
| MS.gene50407.t1 | MTR_3g015550 | 34.641 | 153 | 72 | 6 | 252 | 382 | 687 | 833 | 3.07e-12 | 68.9 |
| MS.gene50407.t1 | MTR_4g022940 | 72.222 | 54 | 15 | 0 | 1 | 54 | 1 | 54 | 1.93e-18 | 80.1 |
| MS.gene50407.t1 | MTR_5g072250 | 26.702 | 382 | 186 | 9 | 122 | 413 | 427 | 804 | 5.88e-18 | 87.0 |
| MS.gene50407.t1 | MTR_4g119195 | 34.545 | 165 | 98 | 4 | 1 | 156 | 1 | 164 | 1.09e-17 | 85.9 |
| MS.gene50407.t1 | MTR_4g119195 | 26.159 | 302 | 191 | 12 | 130 | 423 | 455 | 732 | 4.98e-13 | 71.6 |
| MS.gene50407.t1 | MTR_4g119195 | 34.545 | 165 | 98 | 4 | 1 | 156 | 1 | 164 | 1.18e-17 | 85.9 |
| MS.gene50407.t1 | MTR_4g119195 | 26.159 | 302 | 191 | 12 | 130 | 423 | 455 | 732 | 5.22e-13 | 71.6 |
| MS.gene50407.t1 | MTR_3g015280 | 38.843 | 121 | 65 | 4 | 120 | 238 | 422 | 535 | 3.83e-17 | 84.3 |
| MS.gene50407.t1 | MTR_3g015280 | 39.552 | 134 | 72 | 6 | 252 | 382 | 650 | 777 | 1.37e-13 | 73.2 |
| MS.gene50407.t1 | MTR_8g027540 | 27.796 | 313 | 164 | 10 | 124 | 406 | 438 | 718 | 9.09e-17 | 83.2 |
| MS.gene50407.t1 | MTR_5g071800 | 26.735 | 389 | 174 | 13 | 122 | 413 | 428 | 802 | 1.74e-16 | 82.4 |
| MS.gene50407.t1 | MTR_6g452490 | 27.451 | 306 | 174 | 11 | 124 | 406 | 436 | 716 | 4.32e-16 | 81.3 |
| MS.gene50407.t1 | MTR_5g076840 | 38.849 | 139 | 75 | 4 | 1 | 130 | 1 | 138 | 1.10e-15 | 79.7 |
| MS.gene50407.t1 | MTR_6g046440 | 27.879 | 330 | 180 | 16 | 124 | 409 | 425 | 740 | 1.60e-15 | 79.3 |
| MS.gene50407.t1 | MTR_8g011850 | 28.710 | 310 | 179 | 12 | 119 | 406 | 1482 | 1771 | 1.94e-15 | 79.3 |
| MS.gene50407.t1 | MTR_6g037690 | 38.583 | 127 | 68 | 4 | 1 | 118 | 1 | 126 | 2.61e-15 | 77.0 |
| MS.gene50407.t1 | MTR_8g038570 | 39.344 | 122 | 68 | 2 | 119 | 239 | 447 | 563 | 2.65e-15 | 79.0 |
| MS.gene50407.t1 | MTR_1g078490 | 27.541 | 305 | 186 | 12 | 128 | 423 | 443 | 721 | 2.96e-15 | 78.6 |
| MS.gene50407.t1 | MTR_1g078490 | 36.957 | 138 | 77 | 4 | 1 | 129 | 1 | 137 | 8.24e-15 | 77.0 |
| MS.gene50407.t1 | MTR_8g011320 | 25.155 | 322 | 176 | 12 | 119 | 406 | 361 | 651 | 3.57e-15 | 78.2 |
| MS.gene50407.t1 | MTR_7g078300 | 37.681 | 138 | 76 | 4 | 1 | 129 | 1 | 137 | 4.35e-15 | 77.8 |
| MS.gene50407.t1 | MTR_7g078300 | 25.157 | 318 | 183 | 10 | 126 | 403 | 448 | 750 | 1.30e-12 | 70.1 |
| MS.gene50407.t1 | MTR_8g038590 | 39.837 | 123 | 66 | 3 | 119 | 239 | 443 | 559 | 4.86e-15 | 78.2 |
| MS.gene50407.t1 | MTR_7g078640 | 37.681 | 138 | 76 | 4 | 1 | 129 | 1 | 137 | 5.15e-15 | 77.8 |
| MS.gene50407.t1 | MTR_7g078640 | 25.430 | 291 | 175 | 10 | 130 | 403 | 452 | 717 | 8.68e-12 | 67.8 |
| MS.gene50407.t1 | MTR_8g010440 | 26.752 | 314 | 178 | 10 | 119 | 406 | 431 | 718 | 6.00e-15 | 77.8 |
| MS.gene50407.t1 | MTR_0065s0100 | 25.168 | 298 | 205 | 9 | 119 | 407 | 435 | 723 | 6.50e-15 | 77.4 |
| MS.gene50407.t1 | MTR_1g030770 | 26.224 | 286 | 152 | 8 | 124 | 406 | 438 | 667 | 1.00e-14 | 77.0 |
| MS.gene50407.t1 | MTR_7g491180 | 41.237 | 97 | 52 | 2 | 119 | 214 | 452 | 544 | 1.90e-14 | 75.9 |
| MS.gene50407.t1 | MTR_7g491180 | 35.433 | 127 | 72 | 4 | 1 | 118 | 1 | 126 | 2.39e-14 | 75.9 |
| MS.gene50407.t1 | MTR_7g091190 | 41.237 | 97 | 52 | 2 | 119 | 214 | 452 | 544 | 1.90e-14 | 75.9 |
| MS.gene50407.t1 | MTR_7g091190 | 35.433 | 127 | 72 | 4 | 1 | 118 | 1 | 126 | 2.39e-14 | 75.9 |
| MS.gene50407.t1 | MTR_7g091570 | 33.594 | 128 | 75 | 4 | 1 | 119 | 1 | 127 | 2.06e-14 | 73.6 |
| MS.gene50407.t1 | MTR_8g037220 | 26.899 | 316 | 177 | 13 | 119 | 406 | 1208 | 1497 | 2.26e-14 | 75.9 |
| MS.gene50407.t1 | MTR_8g037220 | 26.899 | 316 | 177 | 13 | 119 | 406 | 1429 | 1718 | 2.29e-14 | 75.9 |
| MS.gene50407.t1 | MTR_6g081940 | 30.741 | 270 | 135 | 13 | 119 | 372 | 125 | 358 | 3.31e-14 | 73.9 |
| MS.gene50407.t1 | MTR_8g011300 | 27.273 | 297 | 166 | 13 | 124 | 399 | 435 | 702 | 2.43e-13 | 72.8 |
| MS.gene50407.t1 | MTR_7g013560 | 28.205 | 312 | 172 | 12 | 122 | 409 | 437 | 720 | 2.62e-13 | 72.4 |
| MS.gene50407.t1 | MTR_8g445980 | 35.556 | 135 | 77 | 6 | 107 | 240 | 427 | 552 | 2.84e-13 | 72.4 |
| MS.gene50407.t1 | MTR_5g028290 | 31.361 | 169 | 111 | 3 | 252 | 416 | 668 | 835 | 2.96e-13 | 72.4 |
| MS.gene50407.t1 | MTR_8g011280 | 27.336 | 289 | 179 | 10 | 124 | 399 | 303 | 573 | 3.50e-13 | 72.0 |
| MS.gene50407.t1 | MTR_1g047910 | 28.736 | 261 | 147 | 11 | 8 | 246 | 328 | 571 | 4.31e-13 | 71.6 |
| MS.gene50407.t1 | MTR_5g071470 | 26.221 | 389 | 176 | 12 | 122 | 413 | 428 | 802 | 5.95e-13 | 71.2 |
| MS.gene50407.t1 | MTR_8g011590 | 25.000 | 336 | 160 | 11 | 119 | 406 | 317 | 608 | 6.30e-13 | 71.2 |
| MS.gene50407.t1 | MTR_7g091550 | 33.071 | 127 | 75 | 4 | 1 | 118 | 3 | 128 | 7.27e-13 | 71.2 |
| MS.gene50407.t1 | MTR_7g091140 | 41.176 | 85 | 47 | 1 | 130 | 214 | 463 | 544 | 1.14e-12 | 70.5 |
| MS.gene50407.t1 | MTR_7g091140 | 33.858 | 127 | 74 | 4 | 1 | 118 | 1 | 126 | 6.23e-12 | 68.2 |
| MS.gene50407.t1 | MTR_4g094540 | 25.743 | 202 | 118 | 5 | 127 | 317 | 454 | 634 | 1.99e-12 | 69.7 |
| MS.gene50407.t1 | MTR_4g094540 | 35.556 | 135 | 76 | 4 | 4 | 130 | 7 | 138 | 3.53e-12 | 68.9 |
| MS.gene50407.t1 | MTR_2g014840 | 31.214 | 173 | 108 | 3 | 119 | 285 | 432 | 599 | 2.06e-12 | 69.7 |
| MS.gene50407.t1 | MTR_3g019040 | 31.250 | 144 | 91 | 3 | 107 | 249 | 428 | 564 | 2.36e-12 | 69.7 |
| MS.gene50407.t1 | MTR_4g119140 | 32.298 | 161 | 90 | 4 | 1 | 156 | 1 | 147 | 3.04e-12 | 68.9 |
| MS.gene50407.t1 | MTR_7g071940 | 33.136 | 169 | 97 | 7 | 252 | 413 | 639 | 798 | 3.95e-12 | 68.9 |
| MS.gene50407.t1 | MTR_7g071940 | 37.895 | 95 | 55 | 3 | 122 | 215 | 423 | 514 | 1.94e-11 | 66.6 |
| MS.gene50407.t1 | MTR_5g071670 | 31.707 | 164 | 102 | 5 | 252 | 413 | 640 | 795 | 4.53e-12 | 68.6 |
| MS.gene50407.t1 | MTR_5g071670 | 40.816 | 98 | 55 | 3 | 122 | 218 | 422 | 517 | 6.33e-12 | 68.2 |
| MS.gene50407.t1 | MTR_3g021340 | 30.723 | 166 | 104 | 5 | 120 | 279 | 421 | 581 | 4.59e-12 | 68.6 |
| MS.gene50407.t1 | MTR_3g035810 | 30.909 | 165 | 107 | 4 | 119 | 279 | 402 | 563 | 4.60e-12 | 68.6 |
| MS.gene50407.t1 | MTR_8g011550 | 32.836 | 134 | 70 | 5 | 119 | 247 | 434 | 552 | 7.00e-12 | 68.2 |
| MS.gene50407.t1 | MTR_5g070470 | 41.053 | 95 | 53 | 3 | 122 | 215 | 428 | 520 | 7.88e-12 | 67.8 |
| MS.gene50407.t1 | MTR_7g091110 | 32.812 | 128 | 76 | 4 | 1 | 119 | 1 | 127 | 1.02e-11 | 67.4 |
| MS.gene50407.t1 | MTR_3g033110 | 33.884 | 121 | 75 | 2 | 119 | 239 | 435 | 550 | 1.23e-11 | 67.4 |
| MS.gene50407.t1 | MTR_5g039570 | 34.132 | 167 | 92 | 7 | 252 | 410 | 416 | 572 | 1.29e-11 | 67.0 |
| MS.gene50407.t1 | MTR_5g071570 | 32.317 | 164 | 105 | 4 | 252 | 413 | 648 | 807 | 1.63e-11 | 67.0 |
| MS.gene50407.t1 | MTR_5g095910 | 35.938 | 128 | 65 | 4 | 119 | 239 | 435 | 552 | 1.77e-11 | 67.0 |
| MS.gene50407.t1 | MTR_4g055630 | 29.798 | 198 | 121 | 7 | 225 | 413 | 621 | 809 | 2.74e-11 | 66.2 |
| MS.gene50407.t1 | MTR_5g071310 | 31.707 | 164 | 102 | 5 | 252 | 413 | 614 | 769 | 3.15e-11 | 65.9 |
| MS.gene50407.t1 | MTR_6g017015 | 26.165 | 279 | 145 | 11 | 146 | 403 | 1 | 239 | 4.18e-11 | 64.7 |
| MS.gene50407.t1 | MTR_6g046480 | 25.773 | 388 | 170 | 20 | 124 | 409 | 424 | 795 | 6.37e-11 | 65.1 |
| MS.gene50407.t1 | MTR_0267s0070 | 32.787 | 122 | 76 | 2 | 119 | 240 | 443 | 558 | 6.39e-11 | 65.1 |
| MS.gene50407.t1 | MTR_3g014040 | 31.618 | 136 | 68 | 6 | 119 | 251 | 439 | 552 | 6.44e-11 | 65.1 |
| MS.gene50407.t1 | MTR_1g023600 | 31.515 | 165 | 102 | 6 | 122 | 285 | 425 | 579 | 6.93e-11 | 64.7 |
| MS.gene50407.t1 | MTR_5g070490 | 29.082 | 196 | 126 | 7 | 222 | 413 | 613 | 799 | 6.94e-11 | 65.1 |
| MS.gene50407.t1 | MTR_3g032370 | 32.231 | 121 | 77 | 2 | 119 | 239 | 434 | 549 | 7.98e-11 | 64.7 |
| MS.gene50407.t1 | MTR_5g040900 | 34.959 | 123 | 66 | 5 | 122 | 238 | 387 | 501 | 9.18e-11 | 64.3 |
| MS.gene50407.t1 | MTR_3g032150 | 32.231 | 121 | 77 | 2 | 119 | 239 | 434 | 549 | 9.42e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCAATTTATTTACAAATT+TGG | 0.147121 | 4.4:-79255752 | MS.gene50407:CDS |
| CAAATTCGTCATGTCTCTTT+TGG | 0.173844 | 4.4:-79256543 | MS.gene50407:CDS |
| AACCAAATTTGTAAATAAAT+TGG | 0.180338 | 4.4:+79255750 | None:intergenic |
| GCTAAGCATATGAATTTAAT+AGG | 0.202808 | 4.4:-79255937 | MS.gene50407:CDS |
| ATCAAGGATTTAGAAATAAA+TGG | 0.228453 | 4.4:-79255802 | MS.gene50407:CDS |
| TTCTCAATGCTCACAAATTA+AGG | 0.231814 | 4.4:-79256482 | MS.gene50407:CDS |
| TATTTCTAAATCCTTGATAT+TGG | 0.264443 | 4.4:+79255807 | None:intergenic |
| CAAAATGGTTCAGAAAATTA+AGG | 0.272920 | 4.4:-79257741 | MS.gene50407:CDS |
| ATTTACAAATTTGGTTGAAT+TGG | 0.274681 | 4.4:-79255743 | MS.gene50407:CDS |
| TGAGATCAAGGCTGTGGTTT+TGG | 0.283133 | 4.4:-79257951 | MS.gene50407:CDS |
| AGGGGACAACTCGTGATAAA+TGG | 0.284375 | 4.4:-79255991 | MS.gene50407:CDS |
| GCTTTGAATTGGATTCTTCC+TGG | 0.326722 | 4.4:-79256521 | MS.gene50407:CDS |
| GATTTAGAAATAAATGGATT+TGG | 0.356682 | 4.4:-79255796 | MS.gene50407:CDS |
| AAGAGAAGTTGGAACTTTCC+AGG | 0.361598 | 4.4:+79256503 | None:intergenic |
| AGTACAAGTTTAGAAGATAT+TGG | 0.364805 | 4.4:-79256741 | MS.gene50407:CDS |
| TTCATATGCTTAGCTTCTGT+TGG | 0.369235 | 4.4:+79255946 | None:intergenic |
| CATTTCTATTACCAAAAGAT+TGG | 0.374852 | 4.4:-79256458 | MS.gene50407:CDS |
| CATGCACAATATCATGCATT+TGG | 0.378434 | 4.4:+79256634 | None:intergenic |
| AAACAACATTGATTCGACTT+TGG | 0.388310 | 4.4:-79256797 | MS.gene50407:CDS |
| TGAGAAGCTGATCGGGAAGC+TGG | 0.390191 | 4.4:-79258038 | MS.gene50407:CDS |
| TATTGGTGATAAGTACTTCA+TGG | 0.391664 | 4.4:-79256724 | MS.gene50407:CDS |
| TTGATCGGTTATCATTGAAA+TGG | 0.398990 | 4.4:-79255903 | MS.gene50407:CDS |
| CTGGGCTCCACGGTTGTTGA+AGG | 0.424728 | 4.4:-79258019 | MS.gene50407:CDS |
| GAGTTGAACTTGATTGTTGT+TGG | 0.427079 | 4.4:+79257907 | None:intergenic |
| ATATTGTAATCTTGTGCAAT+TGG | 0.436788 | 4.4:+79255714 | None:intergenic |
| CACCTGTCGCCTCAAGTCTT+CGG | 0.441003 | 4.4:+79257835 | None:intergenic |
| TAGGAGGATTACATAATTTG+AGG | 0.448803 | 4.4:-79256011 | MS.gene50407:CDS |
| TGAGCATTGAGAAGAGAAGT+TGG | 0.451834 | 4.4:+79256492 | None:intergenic |
| TTTGGATGCAGAGGAGCAGC+AGG | 0.459111 | 4.4:-79257933 | MS.gene50407:CDS |
| TGGTGTGACATTATCTAGTT+CGG | 0.466640 | 4.4:-79255773 | MS.gene50407:CDS |
| TTAGAAATAAATGGATTTGG+TGG | 0.468753 | 4.4:-79255793 | MS.gene50407:CDS |
| ACATGATTGAGAAGCTGATC+GGG | 0.473979 | 4.4:-79258045 | MS.gene50407:CDS |
| CATGTATAAATTGCCTCGCC+TGG | 0.480939 | 4.4:-79255656 | MS.gene50407:CDS |
| AGTGCTAAAACTAGTGAGCT+AGG | 0.490632 | 4.4:-79256030 | MS.gene50407:CDS |
| CTAAGCATATGAATTTAATA+GGG | 0.492693 | 4.4:-79255936 | MS.gene50407:CDS |
| AGGAGGATTACATAATTTGA+GGG | 0.512700 | 4.4:-79256010 | MS.gene50407:CDS |
| GCTCCACGGTTGTTGAAGGC+TGG | 0.516515 | 4.4:-79258015 | MS.gene50407:CDS |
| GTAAGAAAAGAGAAGGTGGT+TGG | 0.516760 | 4.4:+79257763 | None:intergenic |
| ACAACTCGTGATAAATGGCT+TGG | 0.523415 | 4.4:-79255986 | MS.gene50407:CDS |
| GAGAAGCTGATCGGGAAGCT+GGG | 0.533759 | 4.4:-79258037 | MS.gene50407:CDS |
| GAGAGAAGATCTTGACAAGC+TGG | 0.534854 | 4.4:-79257987 | MS.gene50407:CDS |
| AACATGATTGAGAAGCTGAT+CGG | 0.540420 | 4.4:-79258046 | MS.gene50407:CDS |
| CTATTACCAAAAGATTGGAA+TGG | 0.546031 | 4.4:-79256453 | MS.gene50407:CDS |
| AGTTCTGCACTCCAATATCA+AGG | 0.549703 | 4.4:-79255818 | MS.gene50407:CDS |
| GATCGGGAAGCTGGGCTCCA+CGG | 0.553325 | 4.4:-79258029 | MS.gene50407:CDS |
| TATCATTGACTATGTACTCC+AGG | 0.554501 | 4.4:+79255638 | None:intergenic |
| CAATCTATCAAAATGGCTGA+AGG | 0.557303 | 4.4:-79258079 | None:intergenic |
| TAGGGATGTCACATCTTGAT+CGG | 0.557783 | 4.4:-79255918 | MS.gene50407:CDS |
| CACAATATCATGCATTTGGA+AGG | 0.559531 | 4.4:+79256638 | None:intergenic |
| CACCGAAGACTTGAGGCGAC+AGG | 0.568811 | 4.4:-79257837 | MS.gene50407:CDS |
| TCATTCTTACATTCGCGACA+TGG | 0.570285 | 4.4:-79256664 | MS.gene50407:CDS |
| GGATAATATGTCTGAGATCA+AGG | 0.570546 | 4.4:-79257963 | MS.gene50407:CDS |
| TGATGGCAATGAGTTTGAAA+AGG | 0.577183 | 4.4:-79255863 | MS.gene50407:CDS |
| ACAACAATCAAGTTCAACTC+TGG | 0.577800 | 4.4:-79257904 | MS.gene50407:CDS |
| ACTCTGGCTGCAAAAGCTCA+AGG | 0.579276 | 4.4:-79257888 | MS.gene50407:CDS |
| TATGTCTGAGATCAAGGCTG+TGG | 0.592076 | 4.4:-79257957 | MS.gene50407:CDS |
| GTCTTCGGTGTTGAAGTCAT+CGG | 0.600053 | 4.4:+79257850 | None:intergenic |
| ATTCGACTTTGGATTGCACA+AGG | 0.604919 | 4.4:-79256786 | MS.gene50407:CDS |
| AAATGGAATAAACATACTGT+TGG | 0.616236 | 4.4:-79255886 | MS.gene50407:CDS |
| AGAAGATCTTGACAAGCTGG+TGG | 0.621166 | 4.4:-79257984 | MS.gene50407:CDS |
| ACTTCAACACCGAAGACTTG+AGG | 0.622617 | 4.4:-79257844 | MS.gene50407:CDS |
| AATAAACATACTGTTGGTGA+TGG | 0.631699 | 4.4:-79255880 | MS.gene50407:CDS |
| GTAAACAAATTAATTACAGT+AGG | 0.634686 | 4.4:-79255594 | MS.gene50407:CDS |
| ACAGGTGATGACCAGTAACA+AGG | 0.636267 | 4.4:-79257819 | MS.gene50407:CDS |
| GAGGCAATTTATACATGCTG+AGG | 0.640205 | 4.4:+79255662 | None:intergenic |
| TTGACTATGTACTCCAGGCG+AGG | 0.656166 | 4.4:+79255643 | None:intergenic |
| TTCGACTTTGGATTGCACAA+GGG | 0.656489 | 4.4:-79256785 | MS.gene50407:CDS |
| GGAGGATTACATAATTTGAG+GGG | 0.667543 | 4.4:-79256009 | MS.gene50407:CDS |
| GTTCCAGCCTTCAACAACCG+TGG | 0.668267 | 4.4:+79258012 | None:intergenic |
| TTGGATGCAGAGGAGCAGCA+GGG | 0.680480 | 4.4:-79257932 | MS.gene50407:CDS |
| GCTAAAACTAGTGAGCTAGG+AGG | 0.691878 | 4.4:-79256027 | MS.gene50407:CDS |
| GGTGATGACCAGTAACAAGG+CGG | 0.778782 | 4.4:-79257816 | MS.gene50407:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCAAATTTGTAAATAAAT+TGG | + | chr4.4:79257911-79257930 | None:intergenic | 15.0% |
| !! | ATTATATCTATAATTGGAAT+TGG | - | chr4.4:79256143-79256162 | MS.gene50407:intron | 15.0% |
| !! | GTTTCAATTATATCTATAAT+TGG | - | chr4.4:79256137-79256156 | MS.gene50407:intron | 15.0% |
| !!! | CTATCTTTTAGTTAATAAAA+AGG | - | chr4.4:79257075-79257094 | MS.gene50407:intron | 15.0% |
| !! | AATGGAAAAAGTTATTATAC+AGG | - | chr4.4:79257223-79257242 | MS.gene50407:intron | 20.0% |
| !! | ATCAAGGATTTAGAAATAAA+TGG | - | chr4.4:79257856-79257875 | MS.gene50407:CDS | 20.0% |
| !! | ATTTACAAATTTGGTTGAAT+TGG | - | chr4.4:79257915-79257934 | MS.gene50407:CDS | 20.0% |
| !! | CTAAGCATATGAATTTAATA+GGG | - | chr4.4:79257722-79257741 | MS.gene50407:intron | 20.0% |
| !! | GTAAACAAATTAATTACAGT+AGG | - | chr4.4:79258064-79258083 | MS.gene50407:CDS | 20.0% |
| !! | TATAACTGAATTACTTAACT+TGG | - | chr4.4:79257420-79257439 | MS.gene50407:intron | 20.0% |
| !!! | AACATTTTGAGTTGAAAAAA+TGG | - | chr4.4:79256222-79256241 | MS.gene50407:intron | 20.0% |
| !!! | ACATTTTGAGTTGAAAAAAT+GGG | - | chr4.4:79256223-79256242 | MS.gene50407:intron | 20.0% |
| !!! | GATTTAGAAATAAATGGATT+TGG | - | chr4.4:79257862-79257881 | MS.gene50407:CDS | 20.0% |
| !!! | TATTTCTAAATCCTTGATAT+TGG | + | chr4.4:79257854-79257873 | None:intergenic | 20.0% |
| !!! | TTTGGAATTAAATAGTCTTT+TGG | + | chr4.4:79256842-79256861 | None:intergenic | 20.0% |
| ! | AAACTCTCTTATCAACATTA+AGG | + | chr4.4:79255965-79255984 | None:intergenic | 25.0% |
| ! | AAATGGAATAAACATACTGT+TGG | - | chr4.4:79257772-79257791 | MS.gene50407:CDS | 25.0% |
| ! | AACTCTCTTATCAACATTAA+GGG | + | chr4.4:79255964-79255983 | None:intergenic | 25.0% |
| ! | AGTACAAGTTTAGAAGATAT+TGG | - | chr4.4:79256917-79256936 | MS.gene50407:intron | 25.0% |
| ! | ATATCTATAATTGGAATTGG+AGG | - | chr4.4:79256146-79256165 | MS.gene50407:intron | 25.0% |
| ! | ATATTGTAATCTTGTGCAAT+TGG | + | chr4.4:79257947-79257966 | None:intergenic | 25.0% |
| ! | CAAAATGGTTCAGAAAATTA+AGG | - | chr4.4:79255917-79255936 | MS.gene50407:CDS | 25.0% |
| ! | CATTTCTATTACCAAAAGAT+TGG | - | chr4.4:79257200-79257219 | MS.gene50407:intron | 25.0% |
| ! | CTTATGAAAATTGATGAACA+AGG | - | chr4.4:79256728-79256747 | MS.gene50407:CDS | 25.0% |
| ! | GCTAAGCATATGAATTTAAT+AGG | - | chr4.4:79257721-79257740 | MS.gene50407:intron | 25.0% |
| ! | GGCCAATTTATTTACAAATT+TGG | - | chr4.4:79257906-79257925 | MS.gene50407:CDS | 25.0% |
| ! | TTATTATACAGGTAATTCAC+TGG | - | chr4.4:79257234-79257253 | MS.gene50407:intron | 25.0% |
| ! | TTTAGATTCTATGATCTTTG+CGG | + | chr4.4:79256285-79256304 | None:intergenic | 25.0% |
| !! | ACCTTTTACATCAAAATCAT+CGG | + | chr4.4:79256258-79256277 | None:intergenic | 25.0% |
| !! | ATCTTTTATCTTCCGTTTAA+AGG | - | chr4.4:79256505-79256524 | MS.gene50407:CDS | 25.0% |
| !! | TTAGAAATAAATGGATTTGG+TGG | - | chr4.4:79257865-79257884 | MS.gene50407:CDS | 25.0% |
| !!! | AAATTGTGAAAAAGTGTTCA+GGG | - | chr4.4:79256624-79256643 | MS.gene50407:CDS | 25.0% |
| !!! | AAGCACTTTTTCAAATGAAA+TGG | + | chr4.4:79256800-79256819 | None:intergenic | 25.0% |
| AAGAAGATATTTGCTTGTCT+TGG | - | chr4.4:79256358-79256377 | MS.gene50407:intron | 30.0% | |
| AGAAGTTATTGGAAGAGATA+AGG | - | chr4.4:79256058-79256077 | MS.gene50407:CDS | 30.0% | |
| AGGAGGATTACATAATTTGA+GGG | - | chr4.4:79257648-79257667 | MS.gene50407:intron | 30.0% | |
| AGTAATTCAGTTATAGACCT+TGG | + | chr4.4:79257415-79257434 | None:intergenic | 30.0% | |
| ATCTCGATGAAAAACAATCT+TGG | - | chr4.4:79256528-79256547 | MS.gene50407:CDS | 30.0% | |
| CTATTACCAAAAGATTGGAA+TGG | - | chr4.4:79257205-79257224 | MS.gene50407:intron | 30.0% | |
| GTAATTCAGTTATAGACCTT+GGG | + | chr4.4:79257414-79257433 | None:intergenic | 30.0% | |
| TAGGAGGATTACATAATTTG+AGG | - | chr4.4:79257647-79257666 | MS.gene50407:intron | 30.0% | |
| TGATCTTTCTCATTGTTACA+AGG | - | chr4.4:79257378-79257397 | MS.gene50407:intron | 30.0% | |
| TGCTGAATCTTAACTACATA+GGG | - | chr4.4:79257305-79257324 | MS.gene50407:intron | 30.0% | |
| TTCTCAATGCTCACAAATTA+AGG | - | chr4.4:79257176-79257195 | MS.gene50407:intron | 30.0% | |
| TTGATCGGTTATCATTGAAA+TGG | - | chr4.4:79257755-79257774 | MS.gene50407:CDS | 30.0% | |
| TTTCATCGAGATCCTTTAAA+CGG | + | chr4.4:79256520-79256539 | None:intergenic | 30.0% | |
| ! | AATAAACATACTGTTGGTGA+TGG | - | chr4.4:79257778-79257797 | MS.gene50407:CDS | 30.0% |
| ! | CCATTTTGTAAGAAAAGAGA+AGG | + | chr4.4:79255905-79255924 | None:intergenic | 30.0% |
| ! | CCTTCTCTTTTCTTACAAAA+TGG | - | chr4.4:79255902-79255921 | MS.gene50407:CDS | 30.0% |
| ! | CTTTTTCCATTCCAATCTTT+TGG | + | chr4.4:79257214-79257233 | None:intergenic | 30.0% |
| ! | TATTGGTGATAAGTACTTCA+TGG | - | chr4.4:79256934-79256953 | MS.gene50407:intron | 30.0% |
| ! | TTTTGTAAGAAAAGAGAAGG+TGG | + | chr4.4:79255902-79255921 | None:intergenic | 30.0% |
| !! | AAACAACATTGATTCGACTT+TGG | - | chr4.4:79256861-79256880 | MS.gene50407:intron | 30.0% |
| !! | AATTGTGAAAAAGTGTTCAG+GGG | - | chr4.4:79256625-79256644 | MS.gene50407:CDS | 30.0% |
| !! | GAAATTGTGAAAAAGTGTTC+AGG | - | chr4.4:79256623-79256642 | MS.gene50407:CDS | 30.0% |
| !! | TCCGATGATTTTGATGTAAA+AGG | - | chr4.4:79256254-79256273 | MS.gene50407:intron | 30.0% |
| !!! | AGTCGAATCAATGTTGTTTT+TGG | + | chr4.4:79256860-79256879 | None:intergenic | 30.0% |
| AAAAGATTTACCACTTGCCT+TGG | + | chr4.4:79256492-79256511 | None:intergenic | 35.0% | |
| AACATGATTGAGAAGCTGAT+CGG | - | chr4.4:79255612-79255631 | MS.gene50407:CDS | 35.0% | |
| AACTTAACTTCTATGCCACT+TGG | - | chr4.4:79257541-79257560 | MS.gene50407:intron | 35.0% | |
| AACTTCTTCCTCACGAATAA+AGG | + | chr4.4:79256045-79256064 | None:intergenic | 35.0% | |
| AAGTCTTAGACATCTTGAGT+TGG | - | chr4.4:79257507-79257526 | MS.gene50407:intron | 35.0% | |
| ACAACAATCAAGTTCAACTC+TGG | - | chr4.4:79255754-79255773 | MS.gene50407:CDS | 35.0% | |
| ACCAACTTCCAAAGATCTTT+GGG | + | chr4.4:79257487-79257506 | None:intergenic | 35.0% | |
| ATAATTGGAATTGGAGGACT+TGG | - | chr4.4:79256152-79256171 | MS.gene50407:intron | 35.0% | |
| ATCTTAACTACATAGGGTCA+AGG | - | chr4.4:79257311-79257330 | MS.gene50407:intron | 35.0% | |
| ATTCGTGAGGAAGAAGTTAT+TGG | - | chr4.4:79256047-79256066 | MS.gene50407:CDS | 35.0% | |
| CACAATATCATGCATTTGGA+AGG | + | chr4.4:79257023-79257042 | None:intergenic | 35.0% | |
| CATGCACAATATCATGCATT+TGG | + | chr4.4:79257027-79257046 | None:intergenic | 35.0% | |
| CGAGATAGATAAAGTGCAAT+TGG | - | chr4.4:79256313-79256332 | MS.gene50407:intron | 35.0% | |
| CTTAATGTATTCCATGGAGA+AGG | - | chr4.4:79256676-79256695 | MS.gene50407:CDS | 35.0% | |
| GAGTTGAACTTGATTGTTGT+TGG | + | chr4.4:79255754-79255773 | None:intergenic | 35.0% | |
| GGAACTTAGTAAGAGAATTG+AGG | - | chr4.4:79255938-79255957 | MS.gene50407:CDS | 35.0% | |
| GGAGGATTACATAATTTGAG+GGG | - | chr4.4:79257649-79257668 | MS.gene50407:intron | 35.0% | |
| GTGCTGAATCTTAACTACAT+AGG | - | chr4.4:79257304-79257323 | MS.gene50407:intron | 35.0% | |
| TACCAACTTCCAAAGATCTT+TGG | + | chr4.4:79257488-79257507 | None:intergenic | 35.0% | |
| TGATGGCAATGAGTTTGAAA+AGG | - | chr4.4:79257795-79257814 | MS.gene50407:CDS | 35.0% | |
| TGGAAGCTTAATGTATTCCA+TGG | - | chr4.4:79256670-79256689 | MS.gene50407:CDS | 35.0% | |
| TGGTGTGACATTATCTAGTT+CGG | - | chr4.4:79257885-79257904 | MS.gene50407:CDS | 35.0% | |
| TGTAGTTAAGATTCAGCACA+CGG | + | chr4.4:79257303-79257322 | None:intergenic | 35.0% | |
| TTCATATGCTTAGCTTCTGT+TGG | + | chr4.4:79257715-79257734 | None:intergenic | 35.0% | |
| TTCATTCTACCAATACTAGC+TGG | + | chr4.4:79257343-79257362 | None:intergenic | 35.0% | |
| ! | ACCGTATACAAGTTGAGTAA+GGG | + | chr4.4:79256186-79256205 | None:intergenic | 35.0% |
| ! | CAAATTCGTCATGTCTCTTT+TGG | - | chr4.4:79257115-79257134 | MS.gene50407:intron | 35.0% |
| ! | GGATAATATGTCTGAGATCA+AGG | - | chr4.4:79255695-79255714 | MS.gene50407:CDS | 35.0% |
| ! | TATCATTGACTATGTACTCC+AGG | + | chr4.4:79258023-79258042 | None:intergenic | 35.0% |
| !! | AATGAGGAATTGGTGTCAAT+TGG | - | chr4.4:79256596-79256615 | MS.gene50407:CDS | 35.0% |
| !!! | AACTAGCTTTTGAGAATGAG+AGG | - | chr4.4:79256564-79256583 | MS.gene50407:CDS | 35.0% |
| !!! | ACTAGCTTTTGAGAATGAGA+GGG | - | chr4.4:79256565-79256584 | MS.gene50407:CDS | 35.0% |
| !!! | TGTCTCTTTTGGCTTTGAAT+TGG | - | chr4.4:79257126-79257145 | MS.gene50407:intron | 35.0% |
| AACTCACTCCTTTATTCGTG+AGG | - | chr4.4:79256034-79256053 | MS.gene50407:CDS | 40.0% | |
| AAGAGAAGTTGGAACTTTCC+AGG | + | chr4.4:79257158-79257177 | None:intergenic | 40.0% | |
| AATGTATTCCATGGAGAAGG+AGG | - | chr4.4:79256679-79256698 | MS.gene50407:CDS | 40.0% | |
| ACAACTCGTGATAAATGGCT+TGG | - | chr4.4:79257672-79257691 | MS.gene50407:intron | 40.0% | |
| ACATGATTGAGAAGCTGATC+GGG | - | chr4.4:79255613-79255632 | MS.gene50407:CDS | 40.0% | |
| AGGAAGATTCCAGCTAGTAT+TGG | - | chr4.4:79257331-79257350 | MS.gene50407:intron | 40.0% | |
| AGTGCTAAAACTAGTGAGCT+AGG | - | chr4.4:79257628-79257647 | MS.gene50407:intron | 40.0% | |
| AGTTCTGCACTCCAATATCA+AGG | - | chr4.4:79257840-79257859 | MS.gene50407:CDS | 40.0% | |
| ATTCGACTTTGGATTGCACA+AGG | - | chr4.4:79256872-79256891 | MS.gene50407:intron | 40.0% | |
| CCAATGCTTCTAATGACAAG+AGG | + | chr4.4:79256653-79256672 | None:intergenic | 40.0% | |
| GAGCTTCGTGAAAAAGTTGA+AGG | - | chr4.4:79256335-79256354 | MS.gene50407:intron | 40.0% | |
| GAGGCAATTTATACATGCTG+AGG | + | chr4.4:79257999-79258018 | None:intergenic | 40.0% | |
| GCCCTTACTCAACTTGTATA+CGG | - | chr4.4:79256182-79256201 | MS.gene50407:intron | 40.0% | |
| GGAACTAGAGAATGAGGAAT+TGG | - | chr4.4:79256586-79256605 | MS.gene50407:CDS | 40.0% | |
| GTAAGAAAAGAGAAGGTGGT+TGG | + | chr4.4:79255898-79255917 | None:intergenic | 40.0% | |
| GTCATCTTTCCTATTCCAAG+TGG | + | chr4.4:79257559-79257578 | None:intergenic | 40.0% | |
| TAGGGATGTCACATCTTGAT+CGG | - | chr4.4:79257740-79257759 | MS.gene50407:CDS | 40.0% | |
| TATCACCACAAGAAGTGAGA+AGG | - | chr4.4:79256463-79256482 | MS.gene50407:CDS | 40.0% | |
| TCATTCTTACATTCGCGACA+TGG | - | chr4.4:79256994-79257013 | MS.gene50407:intron | 40.0% | |
| TGCTTGTCTTGGATGACAAT+TGG | - | chr4.4:79256369-79256388 | MS.gene50407:intron | 40.0% | |
| TGGAGACTCTTCTACTCAAT+AGG | - | chr4.4:79257440-79257459 | MS.gene50407:intron | 40.0% | |
| TGTTTCAAAACTCGTTGCTC+AGG | + | chr4.4:79256008-79256027 | None:intergenic | 40.0% | |
| TTCGACTTTGGATTGCACAA+GGG | - | chr4.4:79256873-79256892 | MS.gene50407:intron | 40.0% | |
| ! | ACTTCTATGCCACTTGGAAT+AGG | - | chr4.4:79257547-79257566 | MS.gene50407:intron | 40.0% |
| ! | CAATTGATGACACTGCTGAA+AGG | - | chr4.4:79256416-79256435 | MS.gene50407:intron | 40.0% |
| ! | CACCGTATACAAGTTGAGTA+AGG | + | chr4.4:79256187-79256206 | None:intergenic | 40.0% |
| ! | CCTCTTGTCATTAGAAGCAT+TGG | - | chr4.4:79256650-79256669 | MS.gene50407:CDS | 40.0% |
| ! | GCTTTGAATTGGATTCTTCC+TGG | - | chr4.4:79257137-79257156 | MS.gene50407:intron | 40.0% |
| ! | GGAATTGTCTAGAACTTGAC+AGG | + | chr4.4:79257282-79257301 | None:intergenic | 40.0% |
| ! | TTGTCTAGAACTTGACAGGA+TGG | + | chr4.4:79257278-79257297 | None:intergenic | 40.0% |
| !! | TGAGCATTGAGAAGAGAAGT+TGG | + | chr4.4:79257169-79257188 | None:intergenic | 40.0% |
| AAGAAGTGAGAAGGTTGCCA+AGG | - | chr4.4:79256472-79256491 | MS.gene50407:CDS | 45.0% | |
| ACAGGTGATGACCAGTAACA+AGG | - | chr4.4:79255839-79255858 | MS.gene50407:CDS | 45.0% | |
| ACTTCAACACCGAAGACTTG+AGG | - | chr4.4:79255814-79255833 | MS.gene50407:CDS | 45.0% | |
| AGAAGATCTTGACAAGCTGG+TGG | - | chr4.4:79255674-79255693 | MS.gene50407:CDS | 45.0% | |
| AGGGGACAACTCGTGATAAA+TGG | - | chr4.4:79257667-79257686 | MS.gene50407:intron | 45.0% | |
| ATTCCATGGAGAAGGAGGAT+TGG | - | chr4.4:79256684-79256703 | MS.gene50407:CDS | 45.0% | |
| CATGTATAAATTGCCTCGCC+TGG | - | chr4.4:79258002-79258021 | MS.gene50407:CDS | 45.0% | |
| CTTGGATGACAATTGGAACG+AGG | - | chr4.4:79256376-79256395 | MS.gene50407:intron | 45.0% | |
| GAGAGAAGATCTTGACAAGC+TGG | - | chr4.4:79255671-79255690 | MS.gene50407:CDS | 45.0% | |
| GAGAGTTGCCCAAAGATCTT+TGG | - | chr4.4:79257476-79257495 | MS.gene50407:intron | 45.0% | |
| GCTAAAACTAGTGAGCTAGG+AGG | - | chr4.4:79257631-79257650 | MS.gene50407:intron | 45.0% | |
| TGAGAGGGAACTAGAGAATG+AGG | - | chr4.4:79256580-79256599 | MS.gene50407:CDS | 45.0% | |
| ! | GCCCAAAGATCTTTGGAAGT+TGG | - | chr4.4:79257483-79257502 | MS.gene50407:intron | 45.0% |
| ! | TATGTCTGAGATCAAGGCTG+TGG | - | chr4.4:79255701-79255720 | MS.gene50407:CDS | 45.0% |
| ! | TGAGATCAAGGCTGTGGTTT+TGG | - | chr4.4:79255707-79255726 | MS.gene50407:CDS | 45.0% |
| ! | TTGATGACACTGCTGAAAGG+CGG | - | chr4.4:79256419-79256438 | MS.gene50407:intron | 45.0% |
| !! | CTTTTTAGCCGCCTTGTTAC+TGG | + | chr4.4:79255853-79255872 | None:intergenic | 45.0% |
| !! | GGAATTGGTGTCAATTGGCA+AGG | - | chr4.4:79256601-79256620 | MS.gene50407:CDS | 45.0% |
| !! | GTCTTCGGTGTTGAAGTCAT+CGG | + | chr4.4:79255811-79255830 | None:intergenic | 45.0% |
| ACAAGGTTGAAGAGCTCCCA+AGG | - | chr4.4:79257395-79257414 | MS.gene50407:intron | 50.0% | |
| ACTCTGGCTGCAAAAGCTCA+AGG | - | chr4.4:79255770-79255789 | MS.gene50407:CDS | 50.0% | |
| GGAACGAGGATCGTGATCTT+TGG | - | chr4.4:79256390-79256409 | MS.gene50407:intron | 50.0% | |
| GGCAACCTTCTCACTTCTTG+TGG | + | chr4.4:79256471-79256490 | None:intergenic | 50.0% | |
| GGTGATGACCAGTAACAAGG+CGG | - | chr4.4:79255842-79255861 | MS.gene50407:CDS | 50.0% | |
| TGACCAATCCTCCTTCTCCA+TGG | + | chr4.4:79256690-79256709 | None:intergenic | 50.0% | |
| TTGACTATGTACTCCAGGCG+AGG | + | chr4.4:79258018-79258037 | None:intergenic | 50.0% | |
| CACCTGTCGCCTCAAGTCTT+CGG | + | chr4.4:79255826-79255845 | None:intergenic | 55.0% | |
| CTGCTGAAAGGCGGAGCAAA+AGG | - | chr4.4:79256428-79256447 | MS.gene50407:intron | 55.0% | |
| GAGAAGCTGATCGGGAAGCT+GGG | - | chr4.4:79255621-79255640 | MS.gene50407:CDS | 55.0% | |
| GAGAAGGTTGCCAAGGCAAG+TGG | - | chr4.4:79256479-79256498 | MS.gene50407:CDS | 55.0% | |
| GTTCCAGCCTTCAACAACCG+TGG | + | chr4.4:79255649-79255668 | None:intergenic | 55.0% | |
| TGAGAAGCTGATCGGGAAGC+TGG | - | chr4.4:79255620-79255639 | MS.gene50407:CDS | 55.0% | |
| TTGGATGCAGAGGAGCAGCA+GGG | - | chr4.4:79255726-79255745 | MS.gene50407:CDS | 55.0% | |
| TTTGGATGCAGAGGAGCAGC+AGG | - | chr4.4:79255725-79255744 | MS.gene50407:CDS | 55.0% | |
| !!! | GGCTGTGGTTTTGGATGCAG+AGG | - | chr4.4:79255716-79255735 | MS.gene50407:CDS | 55.0% |
| CACCGAAGACTTGAGGCGAC+AGG | - | chr4.4:79255821-79255840 | MS.gene50407:CDS | 60.0% | |
| CTGGGCTCCACGGTTGTTGA+AGG | - | chr4.4:79255639-79255658 | MS.gene50407:CDS | 60.0% | |
| GCTCCACGGTTGTTGAAGGC+TGG | - | chr4.4:79255643-79255662 | MS.gene50407:CDS | 60.0% | |
| GATCGGGAAGCTGGGCTCCA+CGG | - | chr4.4:79255629-79255648 | MS.gene50407:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 79255591 | 79258089 | 79255591 | ID=MS.gene50407 |
| chr4.4 | mRNA | 79255591 | 79258089 | 79255591 | ID=MS.gene50407.t1;Parent=MS.gene50407 |
| chr4.4 | exon | 79257735 | 79258089 | 79257735 | ID=MS.gene50407.t1.exon1;Parent=MS.gene50407.t1 |
| chr4.4 | CDS | 79257735 | 79258089 | 79257735 | ID=cds.MS.gene50407.t1;Parent=MS.gene50407.t1 |
| chr4.4 | exon | 79256436 | 79256834 | 79256436 | ID=MS.gene50407.t1.exon2;Parent=MS.gene50407.t1 |
| chr4.4 | CDS | 79256436 | 79256834 | 79256436 | ID=cds.MS.gene50407.t1;Parent=MS.gene50407.t1 |
| chr4.4 | exon | 79255591 | 79256111 | 79255591 | ID=MS.gene50407.t1.exon3;Parent=MS.gene50407.t1 |
| chr4.4 | CDS | 79255591 | 79256111 | 79255591 | ID=cds.MS.gene50407.t1;Parent=MS.gene50407.t1 |
| Gene Sequence |
| Protein sequence |
