Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50573.t1 | XP_003590533.2 | 97.6 | 291 | 7 | 0 | 1 | 291 | 39 | 329 | 1.90E-165 | 591.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50573.t1 | Q9SX99 | 33.3 | 243 | 149 | 5 | 39 | 277 | 20 | 253 | 3.6e-27 | 123.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50573.t1 | G7ICM6 | 97.6 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 1.4e-165 | 591.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene50573 | 0.804479 | 2.12E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene50573 | 0.807379 | 5.20E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene50573 | 0.832857 | 7.44E-56 | -1.69E-46 |
| MS.gene056497 | MS.gene50573 | 0.845276 | 4.49E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50573.t1 | MTR_1g070840 | 97.595 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 0.0 | 594 |
| MS.gene50573.t1 | MTR_1g021080 | 36.900 | 271 | 148 | 9 | 14 | 278 | 8 | 261 | 2.12e-46 | 157 |
| MS.gene50573.t1 | MTR_6g092780 | 62.500 | 48 | 16 | 1 | 210 | 257 | 422 | 467 | 8.26e-14 | 71.6 |
| MS.gene50573.t1 | MTR_6g092780 | 44.118 | 68 | 36 | 1 | 210 | 277 | 351 | 416 | 2.34e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50573.t1 | AT1G47720 | 33.784 | 222 | 136 | 4 | 60 | 277 | 39 | 253 | 2.83e-32 | 120 |
| MS.gene50573.t1 | AT4G20010 | 34.222 | 225 | 129 | 6 | 54 | 266 | 76 | 293 | 9.54e-28 | 110 |
| MS.gene50573.t1 | AT4G20010 | 57.692 | 52 | 20 | 1 | 210 | 261 | 310 | 359 | 2.45e-12 | 67.0 |
| MS.gene50573.t1 | AT4G20010 | 35.398 | 226 | 125 | 8 | 54 | 266 | 76 | 293 | 1.54e-27 | 110 |
| MS.gene50573.t1 | AT4G20010 | 57.692 | 52 | 20 | 1 | 210 | 261 | 310 | 359 | 2.47e-12 | 67.0 |
| MS.gene50573.t1 | AT5G44785 | 33.971 | 209 | 121 | 6 | 66 | 264 | 71 | 272 | 1.80e-22 | 97.1 |
| MS.gene50573.t1 | AT5G44785 | 58.182 | 55 | 21 | 1 | 210 | 264 | 380 | 432 | 6.92e-14 | 72.0 |
| MS.gene50573.t1 | AT5G44785 | 33.971 | 209 | 121 | 6 | 66 | 264 | 71 | 272 | 1.84e-22 | 96.7 |
| MS.gene50573.t1 | AT5G44785 | 58.182 | 55 | 21 | 1 | 210 | 264 | 378 | 430 | 7.28e-14 | 71.6 |
| MS.gene50573.t1 | AT1G31010 | 26.141 | 241 | 144 | 6 | 60 | 274 | 56 | 288 | 5.26e-18 | 83.6 |
Find 86 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGGATTCATTTGACATTT+TGG | 0.051547 | 1.2:-54219562 | MS.gene50573:CDS |
| TTGAATTTGGGGATGAAATT+AGG | 0.122392 | 1.2:+54219836 | None:intergenic |
| GGAAACTGGGAGTTTGAATT+TGG | 0.179246 | 1.2:+54219823 | None:intergenic |
| TCCTTGTTCCATGAAATTTC+AGG | 0.224276 | 1.2:+54219707 | None:intergenic |
| GGTCATCAGATTCATGTTTC+TGG | 0.230684 | 1.2:-54219500 | MS.gene50573:CDS |
| TGCTTAAAATCAGGAGCTTT+GGG | 0.240351 | 1.2:+54215251 | None:intergenic |
| TGGGGATGAAATTAGGGTTT+TGG | 0.282218 | 1.2:+54219843 | None:intergenic |
| GAAGAGAGTGTTGTGGAAAC+TGG | 0.307345 | 1.2:+54219809 | None:intergenic |
| TGAATTTGGGGATGAAATTA+GGG | 0.312987 | 1.2:+54219837 | None:intergenic |
| AAATCAAACACCTTCCTTCC+GGG | 0.332223 | 1.2:-54219637 | MS.gene50573:CDS |
| GAAATCAAACACCTTCCTTC+CGG | 0.332250 | 1.2:-54219638 | MS.gene50573:CDS |
| GTGCTTAAAATCAGGAGCTT+TGG | 0.338408 | 1.2:+54215250 | None:intergenic |
| GTATGATGCTGCTCCATTAT+TGG | 0.343435 | 1.2:+54219739 | None:intergenic |
| GAAACTGGGAGTTTGAATTT+GGG | 0.346880 | 1.2:+54219824 | None:intergenic |
| GGAAGGTGTTTGATTTCAAC+TGG | 0.349211 | 1.2:+54219644 | None:intergenic |
| CAAACAACAAACTTACTATA+AGG | 0.360042 | 1.2:-54219441 | MS.gene50573:intron |
| GATACCGTTGATTCTGTTGA+TGG | 0.362735 | 1.2:-54219464 | MS.gene50573:CDS |
| CTTCCGGGAAAGTTGTTGCT+TGG | 0.369233 | 1.2:-54219622 | MS.gene50573:CDS |
| CTATTGTCCCACCACTCCCC+TGG | 0.369869 | 1.2:+54218759 | None:intergenic |
| TCCAATTCCATCACCAATAA+TGG | 0.379397 | 1.2:-54219752 | MS.gene50573:CDS |
| TCATGTCTAATATTTCCAAT+TGG | 0.379808 | 1.2:+54215168 | None:intergenic |
| CAGGGGAGTGGTGGGACAAT+AGG | 0.384072 | 1.2:-54218758 | MS.gene50573:CDS |
| TCCATTATTGGTGATGGAAT+TGG | 0.384641 | 1.2:+54219751 | None:intergenic |
| GGGTCTTATACCGGTCAAAA+TGG | 0.387486 | 1.2:-54215140 | MS.gene50573:CDS |
| CATGTCTAATATTTCCAATT+GGG | 0.388324 | 1.2:+54215169 | None:intergenic |
| TGGTAGGATGCCCGTAGATA+TGG | 0.414708 | 1.2:-54215120 | MS.gene50573:CDS |
| AGTCCAAGCAACAACTTTCC+CGG | 0.430883 | 1.2:+54219619 | None:intergenic |
| AGCAGCTGAATTTCATTGAT+AGG | 0.434295 | 1.2:-54219299 | MS.gene50573:CDS |
| CCTTGTTCCATGAAATTTCA+GGG | 0.435573 | 1.2:+54219708 | None:intergenic |
| GGAGAAGCTCTGTGGATTGA+TGG | 0.439305 | 1.2:-54215218 | MS.gene50573:CDS |
| GAAATTTCTGTGGATTGGTT+TGG | 0.442612 | 1.2:+54219787 | None:intergenic |
| AAGTTGAAATTTCTGTGGAT+TGG | 0.456639 | 1.2:+54219782 | None:intergenic |
| TTGCCAACCCAGGGGAGTGG+TGG | 0.459728 | 1.2:-54218767 | MS.gene50573:CDS |
| CTGGTTCTGTGGTGGAATTA+TGG | 0.460092 | 1.2:-54218800 | MS.gene50573:CDS |
| GTATCCTTGTGCTTAAAATC+AGG | 0.463490 | 1.2:+54215242 | None:intergenic |
| ACCATGGGTCAAATCCCAAT+TGG | 0.471295 | 1.2:-54215183 | MS.gene50573:CDS |
| CAAGCTTTCTTTGCCAACCC+AGG | 0.471812 | 1.2:-54218777 | MS.gene50573:CDS |
| TCTTTGCCAACCCAGGGGAG+TGG | 0.478438 | 1.2:-54218770 | MS.gene50573:CDS |
| TATTGTCCCACCACTCCCCT+GGG | 0.482045 | 1.2:+54218760 | None:intergenic |
| ATCTGCGCTCACCATATCTA+CGG | 0.486147 | 1.2:+54215109 | None:intergenic |
| TCCAATTGGGATTTGACCCA+TGG | 0.496465 | 1.2:+54215182 | None:intergenic |
| GGAAATATTAGACATGAGGA+TGG | 0.508703 | 1.2:-54215162 | MS.gene50573:CDS |
| TGTTATTATTTCAGGCAAGA+AGG | 0.513408 | 1.2:-54218847 | MS.gene50573:intron |
| AAGCTTTCTTTGCCAACCCA+GGG | 0.515795 | 1.2:-54218776 | MS.gene50573:CDS |
| GACGAAGCCGATCAAATTGA+CGG | 0.517774 | 1.2:+54219673 | None:intergenic |
| ATGAGGATGGGGTCTTATAC+CGG | 0.520447 | 1.2:-54215149 | MS.gene50573:CDS |
| AGCAACTCCGTCAATTTGAT+CGG | 0.521897 | 1.2:-54219680 | MS.gene50573:CDS |
| GGGAGTGGTGGGACAATAGG+AGG | 0.525627 | 1.2:-54218755 | MS.gene50573:CDS |
| GTCCCACCACTCCCCTGGGT+TGG | 0.526435 | 1.2:+54218764 | None:intergenic |
| AAGGCGAGTTATGCTTCAAA+TGG | 0.528529 | 1.2:-54218828 | MS.gene50573:CDS |
| AAGAGAGTGTTGTGGAAACT+GGG | 0.531350 | 1.2:+54219810 | None:intergenic |
| TATGCTTCAAATGGTACGAC+TGG | 0.538035 | 1.2:-54218819 | MS.gene50573:CDS |
| TGCTGCTCCATTATTGGTGA+TGG | 0.540830 | 1.2:+54219745 | None:intergenic |
| GAAATATTAGACATGAGGAT+GGG | 0.541115 | 1.2:-54215161 | MS.gene50573:CDS |
| GCTTCTCAACATGTTCAGAA+AGG | 0.542292 | 1.2:-54219521 | MS.gene50573:CDS |
| CTTATACCGGTCAAAATGGT+AGG | 0.543946 | 1.2:-54215136 | MS.gene50573:CDS |
| AAACTGGGAGTTTGAATTTG+GGG | 0.544519 | 1.2:+54219825 | None:intergenic |
| CATTGATAGGAGTGACGCGC+CGG | 0.549062 | 1.2:-54219286 | MS.gene50573:CDS |
| TGCCAACCCAGGGGAGTGGT+GGG | 0.556445 | 1.2:-54218766 | MS.gene50573:CDS |
| CCCTGAAATTTCATGGAACA+AGG | 0.559947 | 1.2:-54219708 | MS.gene50573:CDS |
| CAACAACTTTCCCGGAAGGA+AGG | 0.564641 | 1.2:+54219627 | None:intergenic |
| CTTGTTCCATGAAATTTCAG+GGG | 0.564810 | 1.2:+54219709 | None:intergenic |
| TGGTAGATCCACTCCACCAT+GGG | 0.571714 | 1.2:-54215198 | MS.gene50573:CDS |
| TCTGCGCTCACCATATCTAC+GGG | 0.572725 | 1.2:+54215110 | None:intergenic |
| TTGTTCCATGAAATTTCAGG+GGG | 0.591210 | 1.2:+54219710 | None:intergenic |
| AATTGGGATTTGACCCATGG+TGG | 0.594769 | 1.2:+54215185 | None:intergenic |
| GCTTAAAATCAGGAGCTTTG+GGG | 0.595796 | 1.2:+54215252 | None:intergenic |
| AAAATGCTTCGCAAATGTCG+TGG | 0.602676 | 1.2:-54219580 | MS.gene50573:CDS |
| TCTTGATCATGTGACCGCAC+CGG | 0.610253 | 1.2:+54219267 | None:intergenic |
| GGATTTGACCCATGGTGGAG+TGG | 0.613322 | 1.2:+54215190 | None:intergenic |
| ACTTCAAGTTGAAATTTCTG+TGG | 0.615724 | 1.2:+54219777 | None:intergenic |
| AAATATTAGACATGAGGATG+GGG | 0.615794 | 1.2:-54215160 | MS.gene50573:CDS |
| TCAAATTGACGGAGTTGCTG+AGG | 0.622457 | 1.2:+54219684 | None:intergenic |
| TTTGCCATCAACAGAATCAA+CGG | 0.622578 | 1.2:+54219460 | None:intergenic |
| TGGTTTGGAAGAGAGTGTTG+TGG | 0.623476 | 1.2:+54219802 | None:intergenic |
| AAATGGTACGACTGGTTCTG+TGG | 0.623810 | 1.2:-54218811 | MS.gene50573:CDS |
| AATTGGAAATATTAGACATG+AGG | 0.636139 | 1.2:-54215166 | MS.gene50573:CDS |
| CAAGCAACAACTTTCCCGGA+AGG | 0.636873 | 1.2:+54219623 | None:intergenic |
| ATGGTAGATCCACTCCACCA+TGG | 0.638276 | 1.2:-54215199 | MS.gene50573:CDS |
| TTCATTATGTCTGATGACAA+TGG | 0.656636 | 1.2:-54219237 | MS.gene50573:intron |
| GAAGGTGTTTGATTTCAACT+GGG | 0.658033 | 1.2:+54219645 | None:intergenic |
| AGCTTTCTTTGCCAACCCAG+GGG | 0.662573 | 1.2:-54218775 | MS.gene50573:CDS |
| AGGATACTGGAGAAGCTCTG+TGG | 0.677895 | 1.2:-54215226 | MS.gene50573:CDS |
| ATAGGAGTGACGCGCCGGTG+CGG | 0.681821 | 1.2:-54219281 | MS.gene50573:CDS |
| TGGTACGACTGGTTCTGTGG+TGG | 0.688675 | 1.2:-54218808 | MS.gene50573:CDS |
| GTGGGACAATAGGAGGAACA+AGG | 0.691913 | 1.2:-54218748 | MS.gene50573:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAATTGAATAATAAAA+TGG | - | chr1.2:54217080-54217099 | MS.gene50573:intron | 10.0% |
| !! | ACTAAATTGAATAATAAAAT+GGG | - | chr1.2:54217081-54217100 | MS.gene50573:intron | 10.0% |
| !! | ATATGAAAAAAAATAATTTG+AGG | + | chr1.2:54216535-54216554 | None:intergenic | 10.0% |
| !! | TATGAAAAAAAATAATTTGA+GGG | + | chr1.2:54216534-54216553 | None:intergenic | 10.0% |
| !! | TATTAAAACTTATAATTAGA+TGG | - | chr1.2:54219204-54219223 | MS.gene50573:intron | 10.0% |
| !!! | AAGTTTTTATTTTAAAAACT+TGG | - | chr1.2:54218413-54218432 | MS.gene50573:intron | 10.0% |
| !!! | AGTTTTTATTTTAAAAACTT+GGG | - | chr1.2:54218414-54218433 | MS.gene50573:intron | 10.0% |
| !!! | CAATTTTTTATAAAATGAAA+TGG | + | chr1.2:54219666-54219685 | None:intergenic | 10.0% |
| !!! | TCATTAATTCTTTAAAAAAA+TGG | + | chr1.2:54217121-54217140 | None:intergenic | 10.0% |
| !!! | TTTTATTTATATAATGATCT+GGG | + | chr1.2:54218095-54218114 | None:intergenic | 10.0% |
| !!! | TTTTTATTTATATAATGATC+TGG | + | chr1.2:54218096-54218115 | None:intergenic | 10.0% |
| !! | AAGAGATATTAAAATAATCT+TGG | + | chr1.2:54217779-54217798 | None:intergenic | 15.0% |
| !! | ACAATATTCAATTTACATAT+TGG | + | chr1.2:54217330-54217349 | None:intergenic | 15.0% |
| !! | AGAAAGATACAATAAATAAA+TGG | - | chr1.2:54218771-54218790 | MS.gene50573:CDS | 15.0% |
| !! | TTTAAATAACTTATCCATTA+AGG | - | chr1.2:54217565-54217584 | MS.gene50573:intron | 15.0% |
| !!! | GAATAATTATAAGTTTTTAG+GGG | + | chr1.2:54219154-54219173 | None:intergenic | 15.0% |
| !!! | GGAATAATTATAAGTTTTTA+GGG | + | chr1.2:54219155-54219174 | None:intergenic | 15.0% |
| !!! | GTTTTTATTTTAAAAACTTG+GGG | - | chr1.2:54218415-54218434 | MS.gene50573:intron | 15.0% |
| !!! | TATCAATATGTTGATTTTTT+TGG | - | chr1.2:54216737-54216756 | MS.gene50573:intron | 15.0% |
| !!! | TGGAATAATTATAAGTTTTT+AGG | + | chr1.2:54217759-54217778 | None:intergenic | 15.0% |
| !!! | TTATATATTAAGTGTACTTT+TGG | - | chr1.2:54215786-54215805 | MS.gene50573:intron | 15.0% |
| !!! | TTTTTTATAAAATGAAATGG+AGG | + | chr1.2:54219663-54219682 | None:intergenic | 15.0% |
| !! | AAAAAAAATAATTTGAGGGT+TGG | + | chr1.2:54216530-54216549 | None:intergenic | 20.0% |
| !! | AAGAGATATTAAAACAGTAT+TGG | + | chr1.2:54219176-54219195 | None:intergenic | 20.0% |
| !! | AAGTTGAATTAAATGTAAAG+TGG | - | chr1.2:54215854-54215873 | MS.gene50573:intron | 20.0% |
| !! | AGAAAAAGATCAAAGTTATA+TGG | + | chr1.2:54216130-54216149 | None:intergenic | 20.0% |
| !! | AGTTGAATTAAATGTAAAGT+GGG | - | chr1.2:54215855-54215874 | MS.gene50573:intron | 20.0% |
| !! | TATCTTCAAATTATCAATTC+TGG | - | chr1.2:54215961-54215980 | MS.gene50573:intron | 20.0% |
| !! | TATTACACTAATGAATTCTA+TGG | - | chr1.2:54216807-54216826 | MS.gene50573:intron | 20.0% |
| !! | TCATTAGTGTAATAACAAAA+CGG | + | chr1.2:54216801-54216820 | None:intergenic | 20.0% |
| !! | TGCAAAAAAATAAAATTAGG+AGG | + | chr1.2:54216587-54216606 | None:intergenic | 20.0% |
| !! | TGGTGCAAAAAAATAAAATT+AGG | + | chr1.2:54216590-54216609 | None:intergenic | 20.0% |
| !! | TTCAAAATGCAAAAACAATA+GGG | + | chr1.2:54216564-54216583 | None:intergenic | 20.0% |
| !! | TTTATATAGTCAAAATTGAG+TGG | - | chr1.2:54216775-54216794 | MS.gene50573:intron | 20.0% |
| !!! | AAAAATTTCTTTTCTGAACA+AGG | - | chr1.2:54217904-54217923 | MS.gene50573:intron | 20.0% |
| !!! | AAATTCTGTTCAAATTTTAC+AGG | + | chr1.2:54216055-54216074 | None:intergenic | 20.0% |
| !!! | AATTTTCTCATTAATGCAAA+AGG | + | chr1.2:54219246-54219265 | None:intergenic | 20.0% |
| !!! | AGAATTATCTGAAATTATGA+TGG | - | chr1.2:54218888-54218907 | MS.gene50573:intron | 20.0% |
| !!! | ATTTTCTCATTAATGCAAAA+GGG | + | chr1.2:54219245-54219264 | None:intergenic | 20.0% |
| !!! | CTGAAAAGGTTTTTATTTTT+TGG | + | chr1.2:54219277-54219296 | None:intergenic | 20.0% |
| !!! | GAATTGATTTTGACATTATT+TGG | + | chr1.2:54216015-54216034 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTGTTATTATTTC+AGG | - | chr1.2:54216141-54216160 | MS.gene50573:intron | 20.0% |
| !!! | TGATTTTGAATGAATTGATT+CGG | - | chr1.2:54215827-54215846 | MS.gene50573:intron | 20.0% |
| !!! | TTTTATTTTTTAATGGCAGT+TGG | + | chr1.2:54218537-54218556 | None:intergenic | 20.0% |
| ! | AACAAAATCTTATTCATCAG+TGG | + | chr1.2:54219631-54219650 | None:intergenic | 25.0% |
| ! | AATTGGAAATATTAGACATG+AGG | - | chr1.2:54219830-54219849 | MS.gene50573:CDS | 25.0% |
| ! | AATTTATAGTTCTTCACGTT+TGG | - | chr1.2:54218299-54218318 | MS.gene50573:intron | 25.0% |
| ! | AGAATTAACTCCAAATACAA+TGG | + | chr1.2:54216414-54216433 | None:intergenic | 25.0% |
| ! | ATCTAACCTATATGCAATTT+GGG | - | chr1.2:54216665-54216684 | MS.gene50573:intron | 25.0% |
| ! | CAAACAACAAACTTACTATA+AGG | - | chr1.2:54215555-54215574 | MS.gene50573:intron | 25.0% |
| ! | CATGTCTAATATTTCCAATT+GGG | + | chr1.2:54219830-54219849 | None:intergenic | 25.0% |
| ! | GAAAAGCTTACGATAATAAT+AGG | - | chr1.2:54218941-54218960 | MS.gene50573:intron | 25.0% |
| ! | GTTCAAAATGCAAAAACAAT+AGG | + | chr1.2:54216565-54216584 | None:intergenic | 25.0% |
| ! | TAAAAAAGAAATGGAGGAAA+CGG | + | chr1.2:54218173-54218192 | None:intergenic | 25.0% |
| ! | TATCTAACCTATATGCAATT+TGG | - | chr1.2:54216664-54216683 | MS.gene50573:intron | 25.0% |
| ! | TATTCATCAGTGGTTATAAA+CGG | + | chr1.2:54219621-54219640 | None:intergenic | 25.0% |
| ! | TCATGTCTAATATTTCCAAT+TGG | + | chr1.2:54219831-54219850 | None:intergenic | 25.0% |
| ! | TGTCTACTACAAAATTAGAT+GGG | - | chr1.2:54219095-54219114 | MS.gene50573:intron | 25.0% |
| ! | TTCAGTGCATAAAAAAGAAA+TGG | + | chr1.2:54218182-54218201 | None:intergenic | 25.0% |
| !! | AAAATTTGCTTATCTGAACA+AGG | + | chr1.2:54217619-54217638 | None:intergenic | 25.0% |
| !! | AAATTTGCTTATCTGAACAA+GGG | + | chr1.2:54217618-54217637 | None:intergenic | 25.0% |
| !! | ATAAAAACCTTTTCAGAACA+TGG | - | chr1.2:54219281-54219300 | MS.gene50573:CDS | 25.0% |
| !! | TTTTCTCATTAATGCAAAAG+GGG | + | chr1.2:54219244-54219263 | None:intergenic | 25.0% |
| !!! | ACTGTTTTAATATCTCTTTC+TGG | - | chr1.2:54219178-54219197 | MS.gene50573:intron | 25.0% |
| !!! | TATATGATTTGTTCTGAACA+TGG | + | chr1.2:54218726-54218745 | None:intergenic | 25.0% |
| !!! | TCATTTCTAGAATGGTAAAA+AGG | + | chr1.2:54218580-54218599 | None:intergenic | 25.0% |
| !!! | TGAGTTGAACAATAATTTTG+AGG | - | chr1.2:54215902-54215921 | MS.gene50573:intron | 25.0% |
| !!! | TGATTTTTTTGGATATGCAA+TGG | - | chr1.2:54216748-54216767 | MS.gene50573:intron | 25.0% |
| !!! | TTTTTTATGCACTGAAGTTT+AGG | - | chr1.2:54218186-54218205 | MS.gene50573:intron | 25.0% |
| AAAGCACATATCAAAAGTGA+AGG | - | chr1.2:54219386-54219405 | MS.gene50573:intron | 30.0% | |
| AAAGTTCTCATTAATGCAGA+AGG | + | chr1.2:54217867-54217886 | None:intergenic | 30.0% | |
| AAATATTAGACATGAGGATG+GGG | - | chr1.2:54219836-54219855 | MS.gene50573:CDS | 30.0% | |
| AAGTATCAAGAATGTATCGT+AGG | - | chr1.2:54216866-54216885 | MS.gene50573:intron | 30.0% | |
| AAGTTGAAATTTCTGTGGAT+TGG | + | chr1.2:54215217-54215236 | None:intergenic | 30.0% | |
| AATTGAATGTCAATGTGTTG+TGG | - | chr1.2:54215652-54215671 | MS.gene50573:intron | 30.0% | |
| AGACATTCGTAAAGTATGTT+TGG | - | chr1.2:54217237-54217256 | MS.gene50573:intron | 30.0% | |
| AGCTTCAATAGAATAGCTAA+CGG | - | chr1.2:54219004-54219023 | MS.gene50573:intron | 30.0% | |
| AGGCATCTATCTATTTGAAA+AGG | - | chr1.2:54219056-54219075 | MS.gene50573:intron | 30.0% | |
| AGTATCAAGAATGTATCGTA+GGG | - | chr1.2:54216867-54216886 | MS.gene50573:intron | 30.0% | |
| AGTGCATAAAAAAGAAATGG+AGG | + | chr1.2:54218179-54218198 | None:intergenic | 30.0% | |
| ATCCAATATTATCGTTACCT+TGG | - | chr1.2:54219535-54219554 | MS.gene50573:CDS | 30.0% | |
| ATCTATTTGAAAAGGCCTTA+GGG | - | chr1.2:54219064-54219083 | MS.gene50573:intron | 30.0% | |
| ATTGTGAAATAGTTGAGATG+CGG | - | chr1.2:54218370-54218389 | MS.gene50573:intron | 30.0% | |
| ATTTGAACAGAATTTACCAG+TGG | - | chr1.2:54216060-54216079 | MS.gene50573:intron | 30.0% | |
| CACAACACAAACATATCATT+AGG | + | chr1.2:54216693-54216712 | None:intergenic | 30.0% | |
| CTTCAAATTATCAATTCTGG+AGG | - | chr1.2:54215964-54215983 | MS.gene50573:intron | 30.0% | |
| CTTGCATTATATTTGGTCAA+TGG | - | chr1.2:54219431-54219450 | MS.gene50573:intron | 30.0% | |
| GAAATATTAGACATGAGGAT+GGG | - | chr1.2:54219835-54219854 | MS.gene50573:CDS | 30.0% | |
| GAATGAAGAGAAAGTTGTTT+GGG | + | chr1.2:54216625-54216644 | None:intergenic | 30.0% | |
| GATACATTCTTGATACTTAG+TGG | + | chr1.2:54216864-54216883 | None:intergenic | 30.0% | |
| GTGTCTACTACAAAATTAGA+TGG | - | chr1.2:54219094-54219113 | MS.gene50573:intron | 30.0% | |
| TAATGCAAGCTGCAAAATAT+TGG | + | chr1.2:54219420-54219439 | None:intergenic | 30.0% | |
| TATACCAAGAGATATGTGTT+CGG | - | chr1.2:54217159-54217178 | MS.gene50573:intron | 30.0% | |
| TATCTATTTGAAAAGGCCTT+AGG | - | chr1.2:54219063-54219082 | MS.gene50573:intron | 30.0% | |
| TCAGTGCATGAAAAATGAAA+TGG | + | chr1.2:54217465-54217484 | None:intergenic | 30.0% | |
| TCTAACCTATATGCAATTTG+GGG | - | chr1.2:54216666-54216685 | MS.gene50573:intron | 30.0% | |
| TGAATGAAGAGAAAGTTGTT+TGG | + | chr1.2:54216626-54216645 | None:intergenic | 30.0% | |
| TGAATTTGGGGATGAAATTA+GGG | + | chr1.2:54215162-54215181 | None:intergenic | 30.0% | |
| TGCAATCTTTATCTGATTCT+TGG | - | chr1.2:54216939-54216958 | MS.gene50573:intron | 30.0% | |
| TGTTAACATGCCATTGTATT+TGG | - | chr1.2:54216401-54216420 | MS.gene50573:intron | 30.0% | |
| TGTTATTATTTCAGGCAAGA+AGG | - | chr1.2:54216149-54216168 | MS.gene50573:intron | 30.0% | |
| TTCATTATGTCTGATGACAA+TGG | - | chr1.2:54215759-54215778 | MS.gene50573:intron | 30.0% | |
| TTGAATTTGGGGATGAAATT+AGG | + | chr1.2:54215163-54215182 | None:intergenic | 30.0% | |
| TTGTCAATAAAACTGTGCTT+TGG | - | chr1.2:54219330-54219349 | MS.gene50573:intron | 30.0% | |
| TTTCTTTATCTGGATCAACA+TGG | - | chr1.2:54219559-54219578 | MS.gene50573:CDS | 30.0% | |
| TTTGCAGCTTGCATTATATT+TGG | - | chr1.2:54219424-54219443 | MS.gene50573:intron | 30.0% | |
| TTTGTTTGTATGATATGTGC+TGG | - | chr1.2:54216983-54217002 | MS.gene50573:intron | 30.0% | |
| ! | AATGTAAAGTGGGTATTGTT+TGG | - | chr1.2:54215865-54215884 | MS.gene50573:intron | 30.0% |
| ! | CATTGGGTTTCAAGTATTAT+CGG | - | chr1.2:54218670-54218689 | MS.gene50573:intron | 30.0% |
| ! | CCATTCTAGAAATGATACTT+AGG | - | chr1.2:54218585-54218604 | MS.gene50573:intron | 30.0% |
| ! | CCTAAGTATCATTTCTAGAA+TGG | + | chr1.2:54218588-54218607 | None:intergenic | 30.0% |
| ! | GAAATGATACTTAGGCTTTT+CGG | - | chr1.2:54218593-54218612 | MS.gene50573:intron | 30.0% |
| ! | GGGTGTATATGTTGTTTAAT+AGG | + | chr1.2:54218466-54218485 | None:intergenic | 30.0% |
| ! | GTGGATTCATTTGACATTTT+GGG | - | chr1.2:54215435-54215454 | MS.gene50573:intron | 30.0% |
| ! | GTTAATTAGGTGTTAAGTTG+AGG | - | chr1.2:54219029-54219048 | MS.gene50573:intron | 30.0% |
| ! | TCATAAACTTGCTTCAAACA+AGG | + | chr1.2:54216909-54216928 | None:intergenic | 30.0% |
| ! | TTAGTTCTTTATGTTTGCAG+AGG | - | chr1.2:54217638-54217657 | MS.gene50573:intron | 30.0% |
| ! | TTTAGAACATTAAACCTCGT+AGG | - | chr1.2:54217214-54217233 | MS.gene50573:intron | 30.0% |
| ! | TTTTTCATGCACTGAAGTTT+AGG | - | chr1.2:54217470-54217489 | MS.gene50573:intron | 30.0% |
| !! | AAAAGAACCATGTTCTGAAA+AGG | + | chr1.2:54219291-54219310 | None:intergenic | 30.0% |
| !! | ACTTCAAGTTGAAATTTCTG+TGG | + | chr1.2:54215222-54215241 | None:intergenic | 30.0% |
| !! | ATCCATTAAGGATTAGTTTC+TGG | - | chr1.2:54217577-54217596 | MS.gene50573:intron | 30.0% |
| !! | CATAAGTGGGTTATAGATTT+GGG | + | chr1.2:54218628-54218647 | None:intergenic | 30.0% |
| !! | TTGCGAAGCATTTTTCTTAA+CGG | + | chr1.2:54215410-54215429 | None:intergenic | 30.0% |
| !!! | ATTTTTTAATGGCAGTTGGA+TGG | + | chr1.2:54218533-54218552 | None:intergenic | 30.0% |
| !!! | GGTTCTTTTGATTTCATTCT+TGG | - | chr1.2:54219302-54219321 | MS.gene50573:CDS | 30.0% |
| !!! | TGTGTTGTGGTTTTTTGTTT+AGG | - | chr1.2:54215665-54215684 | MS.gene50573:intron | 30.0% |
| AAAACTGTGCTTTGGTACAT+TGG | - | chr1.2:54219338-54219357 | MS.gene50573:intron | 35.0% | |
| AAACTGGGAGTTTGAATTTG+GGG | + | chr1.2:54215174-54215193 | None:intergenic | 35.0% | |
| AATTAGCTCGAAACTCCATA+GGG | - | chr1.2:54217031-54217050 | MS.gene50573:intron | 35.0% | |
| AGCAGCTGAATTTCATTGAT+AGG | - | chr1.2:54215697-54215716 | MS.gene50573:intron | 35.0% | |
| AGCCAAGGTAACGATAATAT+TGG | + | chr1.2:54219540-54219559 | None:intergenic | 35.0% | |
| ATACTTGAAACCCAATGCTA+TGG | + | chr1.2:54218667-54218686 | None:intergenic | 35.0% | |
| ATGAAATTTCAGGGGGTTTA+GGG | + | chr1.2:54215282-54215301 | None:intergenic | 35.0% | |
| ATGTAGTATCTACCTTTAGC+TGG | - | chr1.2:54216091-54216110 | MS.gene50573:intron | 35.0% | |
| CACAATCTTCATAGCAAAAG+AGG | + | chr1.2:54217058-54217077 | None:intergenic | 35.0% | |
| CCAAAGGATGAGATTTATGT+CGG | - | chr1.2:54218246-54218265 | MS.gene50573:intron | 35.0% | |
| CCAAATCTATAACCCACTTA+TGG | - | chr1.2:54218626-54218645 | MS.gene50573:intron | 35.0% | |
| CCTTGTTCCATGAAATTTCA+GGG | + | chr1.2:54215291-54215310 | None:intergenic | 35.0% | |
| CTCCAGAAACTAATCCTTAA+TGG | + | chr1.2:54217582-54217601 | None:intergenic | 35.0% | |
| CTTCAATAGAATAGCTAACG+GGG | - | chr1.2:54219006-54219025 | MS.gene50573:intron | 35.0% | |
| CTTGTTCCATGAAATTTCAG+GGG | + | chr1.2:54215290-54215309 | None:intergenic | 35.0% | |
| GAAACTGGGAGTTTGAATTT+GGG | + | chr1.2:54215175-54215194 | None:intergenic | 35.0% | |
| GAATATTCAGTGTTCGTCAA+TGG | - | chr1.2:54218963-54218982 | MS.gene50573:intron | 35.0% | |
| GCTTCAATAGAATAGCTAAC+GGG | - | chr1.2:54219005-54219024 | MS.gene50573:intron | 35.0% | |
| GGAAATATTAGACATGAGGA+TGG | - | chr1.2:54219834-54219853 | MS.gene50573:CDS | 35.0% | |
| GTATCCTTGTGCTTAAAATC+AGG | + | chr1.2:54219757-54219776 | None:intergenic | 35.0% | |
| GTGCATGAAAAATGAAATGG+AGG | + | chr1.2:54217462-54217481 | None:intergenic | 35.0% | |
| GTTATAAACGGAGTTAGACA+TGG | + | chr1.2:54219609-54219628 | None:intergenic | 35.0% | |
| TACTACATACTACAATCCAC+TGG | + | chr1.2:54216079-54216098 | None:intergenic | 35.0% | |
| TACTTGAAACCCAATGCTAT+GGG | + | chr1.2:54218666-54218685 | None:intergenic | 35.0% | |
| TATGATATGTGCTGGAAACA+TGG | - | chr1.2:54216991-54217010 | MS.gene50573:intron | 35.0% | |
| TATTGGAATTGTTCCCTTCA+CGG | + | chr1.2:54218018-54218037 | None:intergenic | 35.0% | |
| TCCAATTCCATCACCAATAA+TGG | - | chr1.2:54215244-54215263 | MS.gene50573:CDS | 35.0% | |
| TCCTTGTTCCATGAAATTTC+AGG | + | chr1.2:54215292-54215311 | None:intergenic | 35.0% | |
| TCTATTTGAAAAGGCCTTAG+GGG | - | chr1.2:54219065-54219084 | MS.gene50573:intron | 35.0% | |
| TGCTTAAAATCAGGAGCTTT+GGG | + | chr1.2:54219748-54219767 | None:intergenic | 35.0% | |
| TGGTATCTTCATTCGTTATG+TGG | + | chr1.2:54218706-54218725 | None:intergenic | 35.0% | |
| TGTAGTATCTACCTTTAGCT+GGG | - | chr1.2:54216092-54216111 | MS.gene50573:intron | 35.0% | |
| TTCAATAGAATAGCTAACGG+GGG | - | chr1.2:54219007-54219026 | MS.gene50573:intron | 35.0% | |
| TTGGATGGAATTTAACAGCA+GGG | + | chr1.2:54218518-54218537 | None:intergenic | 35.0% | |
| TTGTTCCATGAAATTTCAGG+GGG | + | chr1.2:54215289-54215308 | None:intergenic | 35.0% | |
| TTTGCCATCAACAGAATCAA+CGG | + | chr1.2:54215539-54215558 | None:intergenic | 35.0% | |
| ! | ATGCACTGAAGTTTAGGATT+AGG | - | chr1.2:54217476-54217495 | MS.gene50573:intron | 35.0% |
| ! | ATGGGTTGTTTATACCTCAA+GGG | - | chr1.2:54219113-54219132 | MS.gene50573:intron | 35.0% |
| ! | ATGTTGTTTAATAGGACCTC+AGG | + | chr1.2:54218458-54218477 | None:intergenic | 35.0% |
| ! | ATTAATGCAAAAGGGGTACA+CGG | + | chr1.2:54219237-54219256 | None:intergenic | 35.0% |
| ! | CGTGGATTCATTTGACATTT+TGG | - | chr1.2:54215434-54215453 | MS.gene50573:intron | 35.0% |
| ! | GAAGTTTAGGATTAGGAAGA+GGG | - | chr1.2:54217483-54217502 | MS.gene50573:intron | 35.0% |
| ! | GATTTTAAGCACAAGGATAC+TGG | - | chr1.2:54219757-54219776 | MS.gene50573:CDS | 35.0% |
| ! | TAGCTGACTCAATACAATAC+AGG | + | chr1.2:54218049-54218068 | None:intergenic | 35.0% |
| ! | TCTGAACAAGGTTTTTACGT+CGG | - | chr1.2:54217916-54217935 | MS.gene50573:intron | 35.0% |
| ! | TGAAGTTTAGGATTAGGAAG+AGG | - | chr1.2:54217482-54217501 | MS.gene50573:intron | 35.0% |
| ! | TGTTGTTTAATAGGACCTCA+GGG | + | chr1.2:54218457-54218476 | None:intergenic | 35.0% |
| ! | TTACCTTGGCTTTCTTTATC+TGG | - | chr1.2:54219549-54219568 | MS.gene50573:CDS | 35.0% |
| ! | TTGTGCTCTTTTCCATAAGT+GGG | + | chr1.2:54218641-54218660 | None:intergenic | 35.0% |
| !! | AATTAGGTGTTAAGTTGAGG+AGG | - | chr1.2:54219032-54219051 | MS.gene50573:intron | 35.0% |
| !! | ATTAGGTGTTAAGTTGAGGA+GGG | - | chr1.2:54219033-54219052 | MS.gene50573:intron | 35.0% |
| !! | CCATAAGTGGGTTATAGATT+TGG | + | chr1.2:54218629-54218648 | None:intergenic | 35.0% |
| !! | GAAATTTCTGTGGATTGGTT+TGG | + | chr1.2:54215212-54215231 | None:intergenic | 35.0% |
| !! | GAAGGTGTTTGATTTCAACT+GGG | + | chr1.2:54215354-54215373 | None:intergenic | 35.0% |
| !! | GAGAAAGTTGTTTGGGTTTT+TGG | + | chr1.2:54216618-54216637 | None:intergenic | 35.0% |
| !! | TCCATTATTGGTGATGGAAT+TGG | + | chr1.2:54215248-54215267 | None:intergenic | 35.0% |
| AAAAAGCGAAACCCAGCTAA+AGG | + | chr1.2:54216106-54216125 | None:intergenic | 40.0% | |
| AAAATGCTTCGCAAATGTCG+TGG | - | chr1.2:54215416-54215435 | MS.gene50573:intron | 40.0% | |
| AAAGCACATATCAACCGTGA+AGG | - | chr1.2:54218001-54218020 | MS.gene50573:intron | 40.0% | |
| AAATCAAACACCTTCCTTCC+GGG | - | chr1.2:54215359-54215378 | MS.gene50573:intron | 40.0% | |
| AAGCACATATCAACCGTGAA+GGG | - | chr1.2:54218002-54218021 | MS.gene50573:intron | 40.0% | |
| AAGGCGAGTTATGCTTCAAA+TGG | - | chr1.2:54216168-54216187 | MS.gene50573:intron | 40.0% | |
| AATGGAGGAAACGGCAATAT+TGG | + | chr1.2:54218164-54218183 | None:intergenic | 40.0% | |
| AGCAACTCCGTCAATTTGAT+CGG | - | chr1.2:54215316-54215335 | MS.gene50573:intron | 40.0% | |
| AGGTTTCTCTATGACAAGGT+TGG | - | chr1.2:54218217-54218236 | MS.gene50573:intron | 40.0% | |
| AGTGTTCGTCAATGGAAAAC+TGG | - | chr1.2:54218971-54218990 | MS.gene50573:intron | 40.0% | |
| AGTGTTTGCATGAGACATCT+GGG | - | chr1.2:54218815-54218834 | MS.gene50573:CDS | 40.0% | |
| ATAGCTAACGGGGGTTAATT+AGG | - | chr1.2:54219016-54219035 | MS.gene50573:intron | 40.0% | |
| CAATACAGGCAGCAAGATAT+TGG | + | chr1.2:54218035-54218054 | None:intergenic | 40.0% | |
| CAATTAGCTCGAAACTCCAT+AGG | - | chr1.2:54217030-54217049 | MS.gene50573:intron | 40.0% | |
| CATGAAATTTCAGGGGGTTT+AGG | + | chr1.2:54215283-54215302 | None:intergenic | 40.0% | |
| CCACAGTACAAGGTTTATGT+CGG | - | chr1.2:54217539-54217558 | MS.gene50573:intron | 40.0% | |
| CCCTGAAATTTCATGGAACA+AGG | - | chr1.2:54215288-54215307 | MS.gene50573:intron | 40.0% | |
| CCGACATAAATCTCATCCTT+TGG | + | chr1.2:54218249-54218268 | None:intergenic | 40.0% | |
| CTAAACCCCCTGAAATTTCA+TGG | - | chr1.2:54215281-54215300 | MS.gene50573:intron | 40.0% | |
| CTTATACCGGTCAAAATGGT+AGG | - | chr1.2:54219860-54219879 | MS.gene50573:CDS | 40.0% | |
| GAAATCAAACACCTTCCTTC+CGG | - | chr1.2:54215358-54215377 | MS.gene50573:intron | 40.0% | |
| GAGGAAATCATTGAAAGCAG+TGG | + | chr1.2:54217443-54217462 | None:intergenic | 40.0% | |
| GATCCAGATAAAGAAAGCCA+AGG | + | chr1.2:54219555-54219574 | None:intergenic | 40.0% | |
| GCTTAAAATCAGGAGCTTTG+GGG | + | chr1.2:54219747-54219766 | None:intergenic | 40.0% | |
| GCTTCTCAACATGTTCAGAA+AGG | - | chr1.2:54215475-54215494 | MS.gene50573:intron | 40.0% | |
| GGAAACTGGGAGTTTGAATT+TGG | + | chr1.2:54215176-54215195 | None:intergenic | 40.0% | |
| GGTCATCAGATTCATGTTTC+TGG | - | chr1.2:54215496-54215515 | MS.gene50573:intron | 40.0% | |
| GGTTTCTCTATGACAAGGTT+GGG | - | chr1.2:54218218-54218237 | MS.gene50573:intron | 40.0% | |
| GTACATTGGCCAATAAGAAC+TGG | - | chr1.2:54219352-54219371 | MS.gene50573:intron | 40.0% | |
| GTATGATGCTGCTCCATTAT+TGG | + | chr1.2:54215260-54215279 | None:intergenic | 40.0% | |
| GTGCTTAAAATCAGGAGCTT+TGG | + | chr1.2:54219749-54219768 | None:intergenic | 40.0% | |
| GTGTCTACTGTGAAAGTAGA+GGG | + | chr1.2:54218488-54218507 | None:intergenic | 40.0% | |
| GTTGGATGGAATTTAACAGC+AGG | + | chr1.2:54218519-54218538 | None:intergenic | 40.0% | |
| GTTGTTTAATAGGACCTCAG+GGG | + | chr1.2:54218456-54218475 | None:intergenic | 40.0% | |
| TAGGACCCCAAATTGCATAT+AGG | + | chr1.2:54216674-54216693 | None:intergenic | 40.0% | |
| TAGTGTTTGCATGAGACATC+TGG | - | chr1.2:54218814-54218833 | MS.gene50573:CDS | 40.0% | |
| TATGCTTCAAATGGTACGAC+TGG | - | chr1.2:54216177-54216196 | MS.gene50573:intron | 40.0% | |
| TGAAATAGTTGAGATGCGGA+AGG | - | chr1.2:54218374-54218393 | MS.gene50573:intron | 40.0% | |
| TGCAAGTAGCCAGTTCTTAT+TGG | + | chr1.2:54219364-54219383 | None:intergenic | 40.0% | |
| TGCGTCTTCACAAACATTTC+TGG | - | chr1.2:54219705-54219724 | MS.gene50573:CDS | 40.0% | |
| TGGAGTTTCGAGCTAATTGA+AGG | + | chr1.2:54217029-54217048 | None:intergenic | 40.0% | |
| TGGATGGAATTTAACAGCAG+GGG | + | chr1.2:54218517-54218536 | None:intergenic | 40.0% | |
| TGGTAGGTTTCTCTATGACA+AGG | - | chr1.2:54218213-54218232 | MS.gene50573:intron | 40.0% | |
| TGTCTACTGTGAAAGTAGAG+GGG | + | chr1.2:54218487-54218506 | None:intergenic | 40.0% | |
| TGTGTCTACTGTGAAAGTAG+AGG | + | chr1.2:54218489-54218508 | None:intergenic | 40.0% | |
| ! | AGCTCCTGATTTTAAGCACA+AGG | - | chr1.2:54219750-54219769 | MS.gene50573:CDS | 40.0% |
| ! | ATGAGACATCTGGGATTAAG+AGG | - | chr1.2:54218824-54218843 | MS.gene50573:CDS | 40.0% |
| ! | CAGCTGACTCTTAATGGAAA+AGG | + | chr1.2:54217967-54217986 | None:intergenic | 40.0% |
| ! | CTGAAGTTTAGGACAATGGT+AGG | - | chr1.2:54218197-54218216 | MS.gene50573:intron | 40.0% |
| ! | CTTGTGCTCTTTTCCATAAG+TGG | + | chr1.2:54218642-54218661 | None:intergenic | 40.0% |
| ! | GGGATGAAATTAGGGTTTTG+GGG | + | chr1.2:54215154-54215173 | None:intergenic | 40.0% |
| ! | GGGGATGAAATTAGGGTTTT+GGG | + | chr1.2:54215155-54215174 | None:intergenic | 40.0% |
| ! | TACAGTCAGCTGACTCTTAA+TGG | + | chr1.2:54217973-54217992 | None:intergenic | 40.0% |
| ! | TGCACTGAAGTTTAGGACAA+TGG | - | chr1.2:54218193-54218212 | MS.gene50573:intron | 40.0% |
| ! | TGGGGATGAAATTAGGGTTT+TGG | + | chr1.2:54215156-54215175 | None:intergenic | 40.0% |
| ! | TTTAGGATTAGGAAGAGGGT+AGG | - | chr1.2:54217487-54217506 | MS.gene50573:intron | 40.0% |
| !! | AAGAGAGTGTTGTGGAAACT+GGG | + | chr1.2:54215189-54215208 | None:intergenic | 40.0% |
| !! | AAGTGGGTTATAGATTTGGG+TGG | + | chr1.2:54218625-54218644 | None:intergenic | 40.0% |
| !! | GATACCGTTGATTCTGTTGA+TGG | - | chr1.2:54215532-54215551 | MS.gene50573:intron | 40.0% |
| !! | GATGGGTTGTTTATACCTCA+AGG | - | chr1.2:54219112-54219131 | MS.gene50573:intron | 40.0% |
| !! | GGAAGGTGTTTGATTTCAAC+TGG | + | chr1.2:54215355-54215374 | None:intergenic | 40.0% |
| !! | GGATGAAATTAGGGTTTTGG+GGG | + | chr1.2:54215153-54215172 | None:intergenic | 40.0% |
| !! | TCTACTAGCCTTTCAATCAG+TGG | - | chr1.2:54216472-54216491 | MS.gene50573:intron | 40.0% |
| AAAGGCTAGTAGAATGAGCG+TGG | + | chr1.2:54216465-54216484 | None:intergenic | 45.0% | |
| AAGCTTTCTTTGCCAACCCA+GGG | - | chr1.2:54216220-54216239 | MS.gene50573:intron | 45.0% | |
| AAGTCCTAAGCCTAGAAACC+GGG | + | chr1.2:54217516-54217535 | None:intergenic | 45.0% | |
| AATTACACTGACCTCCCTTG+AGG | + | chr1.2:54219130-54219149 | None:intergenic | 45.0% | |
| AATTGGGATTTGACCCATGG+TGG | + | chr1.2:54219814-54219833 | None:intergenic | 45.0% | |
| ACCATGGGTCAAATCCCAAT+TGG | - | chr1.2:54219813-54219832 | MS.gene50573:CDS | 45.0% | |
| AGCACAAGACCCATAGCATT+GGG | - | chr1.2:54218654-54218673 | MS.gene50573:intron | 45.0% | |
| AGTAGAATGAGCGTGGTTGA+GGG | + | chr1.2:54216458-54216477 | None:intergenic | 45.0% | |
| AGTCCAAGCAACAACTTTCC+CGG | + | chr1.2:54215380-54215399 | None:intergenic | 45.0% | |
| ATCTGCGCTCACCATATCTA+CGG | + | chr1.2:54219890-54219909 | None:intergenic | 45.0% | |
| CAAGTCCTAAGCCTAGAAAC+CGG | + | chr1.2:54217517-54217536 | None:intergenic | 45.0% | |
| CATAGCAAAAGAGGTCCCTA+TGG | + | chr1.2:54217049-54217068 | None:intergenic | 45.0% | |
| CCGACATAAACCTTGTACTG+TGG | + | chr1.2:54217542-54217561 | None:intergenic | 45.0% | |
| CTTTACGAATGTCTCCTACG+AGG | + | chr1.2:54217231-54217250 | None:intergenic | 45.0% | |
| GACGAAGCCGATCAAATTGA+CGG | + | chr1.2:54215326-54215345 | None:intergenic | 45.0% | |
| GAGTATGCAGTATGCCAACA+GGG | + | chr1.2:54217845-54217864 | None:intergenic | 45.0% | |
| GGTTGTTTATACCTCAAGGG+AGG | - | chr1.2:54219116-54219135 | MS.gene50573:intron | 45.0% | |
| GTCTACTGTGAAAGTAGAGG+GGG | + | chr1.2:54218486-54218505 | None:intergenic | 45.0% | |
| GTTGCCGAACACATATCTCT+TGG | + | chr1.2:54217166-54217185 | None:intergenic | 45.0% | |
| TAGTAGAATGAGCGTGGTTG+AGG | + | chr1.2:54216459-54216478 | None:intergenic | 45.0% | |
| TCAAATTGACGGAGTTGCTG+AGG | + | chr1.2:54215315-54215334 | None:intergenic | 45.0% | |
| TCCAATTGGGATTTGACCCA+TGG | + | chr1.2:54219817-54219836 | None:intergenic | 45.0% | |
| TGCTGCTCCATTATTGGTGA+TGG | + | chr1.2:54215254-54215273 | None:intergenic | 45.0% | |
| ! | ATGAGGATGGGGTCTTATAC+CGG | - | chr1.2:54219847-54219866 | MS.gene50573:CDS | 45.0% |
| ! | GGGTCTTATACCGGTCAAAA+TGG | - | chr1.2:54219856-54219875 | MS.gene50573:CDS | 45.0% |
| !! | AAATGGTACGACTGGTTCTG+TGG | - | chr1.2:54216185-54216204 | MS.gene50573:intron | 45.0% |
| !! | AATTACACTGACTTCCCCTG+AGG | - | chr1.2:54218439-54218458 | MS.gene50573:intron | 45.0% |
| !! | ACTAGCCTTTCAATCAGTGG+CGG | - | chr1.2:54216475-54216494 | MS.gene50573:intron | 45.0% |
| !! | CATTTCTGGTAACTTCGCAG+AGG | - | chr1.2:54219719-54219738 | MS.gene50573:CDS | 45.0% |
| !! | CTGGTTCTGTGGTGGAATTA+TGG | - | chr1.2:54216196-54216215 | MS.gene50573:intron | 45.0% |
| !! | GAAGAGAGTGTTGTGGAAAC+TGG | + | chr1.2:54215190-54215209 | None:intergenic | 45.0% |
| !! | TGGTTTGGAAGAGAGTGTTG+TGG | + | chr1.2:54215197-54215216 | None:intergenic | 45.0% |
| !!! | ATTAGGGTTTTGGGGGAAAG+TGG | + | chr1.2:54215146-54215165 | None:intergenic | 45.0% |
| !!! | TGTTTGGGTTTTTGGCTAGC+TGG | + | chr1.2:54216610-54216629 | None:intergenic | 45.0% |
| !! | TTGAATATAATATTATTATA+AGG | - | chr1.2:54217302-54217321 | MS.gene50573:intron | 5.0% |
| !!! | TTTTTGTTTTTATTTTTTAA+TGG | + | chr1.2:54218544-54218563 | None:intergenic | 5.0% |
| AAATCGAACCCCCTGATCCA+AGG | - | chr1.2:54217406-54217425 | MS.gene50573:intron | 50.0% | |
| AATCGAACCCCCTGATCCAA+GGG | - | chr1.2:54217407-54217426 | MS.gene50573:intron | 50.0% | |
| ACAAGGTTGGGACTTGCCAA+AGG | - | chr1.2:54218230-54218249 | MS.gene50573:intron | 50.0% | |
| AGCTTTCTTTGCCAACCCAG+GGG | - | chr1.2:54216221-54216240 | MS.gene50573:intron | 50.0% | |
| AGGATACTGGAGAAGCTCTG+TGG | - | chr1.2:54219770-54219789 | MS.gene50573:CDS | 50.0% | |
| ATGGTAGATCCACTCCACCA+TGG | - | chr1.2:54219797-54219816 | MS.gene50573:CDS | 50.0% | |
| CAACAACTTTCCCGGAAGGA+AGG | + | chr1.2:54215372-54215391 | None:intergenic | 50.0% | |
| CAAGCAACAACTTTCCCGGA+AGG | + | chr1.2:54215376-54215395 | None:intergenic | 50.0% | |
| CAAGCTTTCTTTGCCAACCC+AGG | - | chr1.2:54216219-54216238 | MS.gene50573:intron | 50.0% | |
| CAGTATGCCAACAGGGTTGA+CGG | + | chr1.2:54217838-54217857 | None:intergenic | 50.0% | |
| CTTCCGGGAAAGTTGTTGCT+TGG | - | chr1.2:54215374-54215393 | MS.gene50573:intron | 50.0% | |
| GAGCACAAGACCCATAGCAT+TGG | - | chr1.2:54218653-54218672 | MS.gene50573:intron | 50.0% | |
| GGAGTATGCAGTATGCCAAC+AGG | + | chr1.2:54217846-54217865 | None:intergenic | 50.0% | |
| GTGGGACAATAGGAGGAACA+AGG | - | chr1.2:54216248-54216267 | MS.gene50573:intron | 50.0% | |
| TCTGCGCTCACCATATCTAC+GGG | + | chr1.2:54219889-54219908 | None:intergenic | 50.0% | |
| TCTTGATCATGTGACCGCAC+CGG | + | chr1.2:54215732-54215751 | None:intergenic | 50.0% | |
| TGGTAGATCCACTCCACCAT+GGG | - | chr1.2:54219798-54219817 | MS.gene50573:CDS | 50.0% | |
| TGGTAGGATGCCCGTAGATA+TGG | - | chr1.2:54219876-54219895 | MS.gene50573:CDS | 50.0% | |
| ! | GGAGAAGCTCTGTGGATTGA+TGG | - | chr1.2:54219778-54219797 | MS.gene50573:CDS | 50.0% |
| !! | AGGTGTTAAGTTGAGGAGGG+AGG | - | chr1.2:54219036-54219055 | MS.gene50573:intron | 50.0% |
| !! | GGGCATCCTACCATTTTGAC+CGG | + | chr1.2:54219869-54219888 | None:intergenic | 50.0% |
| !!! | GGTTTTGGGGGAAAGTGGTA+AGG | + | chr1.2:54215141-54215160 | None:intergenic | 50.0% |
| AGGACTTGCGCCACAGTACA+AGG | - | chr1.2:54217529-54217548 | MS.gene50573:intron | 55.0% | |
| CAAACAGCCGTCAACCCTGT+TGG | - | chr1.2:54217828-54217847 | MS.gene50573:intron | 55.0% | |
| CATTGATAGGAGTGACGCGC+CGG | - | chr1.2:54215710-54215729 | MS.gene50573:intron | 55.0% | |
| TAGGAAGAGGGTAGGTTGCC+CGG | - | chr1.2:54217495-54217514 | MS.gene50573:intron | 55.0% | |
| TATTGTCCCACCACTCCCCT+GGG | + | chr1.2:54216239-54216258 | None:intergenic | 55.0% | |
| TGCATCCCCTCACCACAATG+TGG | + | chr1.2:54216503-54216522 | None:intergenic | 55.0% | |
| TTGAAAGCAGTGGCGTTGCC+AGG | + | chr1.2:54217433-54217452 | None:intergenic | 55.0% | |
| ! | GGATTTGACCCATGGTGGAG+TGG | + | chr1.2:54219809-54219828 | None:intergenic | 55.0% |
| ! | GTTGCCCGGTTTCTAGGCTT+AGG | - | chr1.2:54217509-54217528 | MS.gene50573:intron | 55.0% |
| ! | TGGCTCCGCCACTGATTGAA+AGG | + | chr1.2:54216483-54216502 | None:intergenic | 55.0% |
| !! | TGGTACGACTGGTTCTGTGG+TGG | - | chr1.2:54216188-54216207 | MS.gene50573:intron | 55.0% |
| CGGAGCCACATTGTGGTGAG+GGG | - | chr1.2:54216495-54216514 | MS.gene50573:intron | 60.0% | |
| CTATTGTCCCACCACTCCCC+TGG | + | chr1.2:54216240-54216259 | None:intergenic | 60.0% | |
| GCGGAGCCACATTGTGGTGA+GGG | - | chr1.2:54216494-54216513 | MS.gene50573:intron | 60.0% | |
| GGGTAGGTTGCCCGGTTTCT+AGG | - | chr1.2:54217503-54217522 | MS.gene50573:intron | 60.0% | |
| GTTGCCAGGCCCTTGGATCA+GGG | + | chr1.2:54217419-54217438 | None:intergenic | 60.0% | |
| TCTTTGCCAACCCAGGGGAG+TGG | - | chr1.2:54216226-54216245 | MS.gene50573:intron | 60.0% | |
| TTGCCAGGCCCTTGGATCAG+GGG | + | chr1.2:54217418-54217437 | None:intergenic | 60.0% | |
| ! | CAGGGGAGTGGTGGGACAAT+AGG | - | chr1.2:54216238-54216257 | MS.gene50573:intron | 60.0% |
| ! | GGGAGTGGTGGGACAATAGG+AGG | - | chr1.2:54216241-54216260 | MS.gene50573:intron | 60.0% |
| ! | TCAGTGGCGGAGCCACATTG+TGG | - | chr1.2:54216488-54216507 | MS.gene50573:intron | 60.0% |
| AACCCCCTGATCCAAGGGCC+TGG | - | chr1.2:54217412-54217431 | MS.gene50573:intron | 65.0% | |
| CGTTGCCAGGCCCTTGGATC+AGG | + | chr1.2:54217420-54217439 | None:intergenic | 65.0% | |
| GGCGGAGCCACATTGTGGTG+AGG | - | chr1.2:54216493-54216512 | MS.gene50573:intron | 65.0% | |
| TGCCAACCCAGGGGAGTGGT+GGG | - | chr1.2:54216230-54216249 | MS.gene50573:intron | 65.0% | |
| TGCCAGGCCCTTGGATCAGG+GGG | + | chr1.2:54217417-54217436 | None:intergenic | 65.0% | |
| TTGCCAACCCAGGGGAGTGG+TGG | - | chr1.2:54216229-54216248 | MS.gene50573:intron | 65.0% | |
| ! | ATAGGAGTGACGCGCCGGTG+CGG | - | chr1.2:54215715-54215734 | MS.gene50573:intron | 65.0% |
| CAGTGGCGTTGCCAGGCCCT+TGG | + | chr1.2:54217426-54217445 | None:intergenic | 70.0% | |
| GTCCCACCACTCCCCTGGGT+TGG | + | chr1.2:54216235-54216254 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 54215091 | 54219927 | 54215091 | ID=MS.gene50573 |
| chr1.2 | mRNA | 54215091 | 54219927 | 54215091 | ID=MS.gene50573.t1;Parent=MS.gene50573 |
| chr1.2 | exon | 54219442 | 54219927 | 54219442 | ID=MS.gene50573.t1.exon1;Parent=MS.gene50573.t1 |
| chr1.2 | CDS | 54219442 | 54219927 | 54219442 | ID=cds.MS.gene50573.t1;Parent=MS.gene50573.t1 |
| chr1.2 | exon | 54219238 | 54219331 | 54219238 | ID=MS.gene50573.t1.exon2;Parent=MS.gene50573.t1 |
| chr1.2 | CDS | 54219238 | 54219331 | 54219238 | ID=cds.MS.gene50573.t1;Parent=MS.gene50573.t1 |
| chr1.2 | exon | 54218749 | 54218855 | 54218749 | ID=MS.gene50573.t1.exon3;Parent=MS.gene50573.t1 |
| chr1.2 | CDS | 54218749 | 54218855 | 54218749 | ID=cds.MS.gene50573.t1;Parent=MS.gene50573.t1 |
| chr1.2 | exon | 54215091 | 54215279 | 54215091 | ID=MS.gene50573.t1.exon4;Parent=MS.gene50573.t1 |
| chr1.2 | CDS | 54215091 | 54215279 | 54215091 | ID=cds.MS.gene50573.t1;Parent=MS.gene50573.t1 |
| Gene Sequence |
| Protein sequence |
