Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50581.t1 | XP_013468576.1 | 88.1 | 193 | 23 | 0 | 1 | 193 | 1 | 193 | 5.60E-81 | 310.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50581.t1 | P93829 | 41.4 | 174 | 102 | 0 | 18 | 191 | 7 | 180 | 2.6e-26 | 120.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50581.t1 | A0A072VMF6 | 88.1 | 193 | 23 | 0 | 1 | 193 | 1 | 193 | 4.1e-81 | 310.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76107 | MS.gene50581 | PPI |
MS.gene51092 | MS.gene50581 | PPI |
MS.gene50581 | MS.gene94199 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50581.t1 | MTR_1g070480 | 88.601 | 193 | 22 | 0 | 1 | 193 | 1 | 193 | 5.29e-111 | 315 |
MS.gene50581.t1 | MTR_7g096220 | 53.846 | 182 | 83 | 1 | 11 | 191 | 18 | 199 | 5.65e-62 | 191 |
MS.gene50581.t1 | MTR_3g012070 | 80.000 | 95 | 18 | 1 | 97 | 191 | 34 | 127 | 6.05e-36 | 124 |
MS.gene50581.t1 | MTR_2g100260 | 46.853 | 143 | 70 | 2 | 33 | 170 | 38 | 179 | 4.97e-34 | 119 |
MS.gene50581.t1 | MTR_1g080760 | 48.125 | 160 | 78 | 2 | 35 | 193 | 38 | 193 | 1.08e-31 | 114 |
MS.gene50581.t1 | MTR_6g092690 | 39.024 | 164 | 94 | 2 | 11 | 168 | 11 | 174 | 4.24e-31 | 112 |
MS.gene50581.t1 | MTR_4g014060 | 38.849 | 139 | 83 | 1 | 33 | 169 | 61 | 199 | 2.02e-28 | 106 |
MS.gene50581.t1 | MTR_0562s0010 | 38.849 | 139 | 83 | 1 | 33 | 169 | 61 | 199 | 2.02e-28 | 106 |
MS.gene50581.t1 | MTR_5g083490 | 33.163 | 196 | 111 | 2 | 6 | 181 | 8 | 203 | 1.45e-26 | 101 |
MS.gene50581.t1 | MTR_2g100270 | 45.614 | 171 | 83 | 2 | 9 | 169 | 3 | 173 | 2.77e-25 | 97.1 |
MS.gene50581.t1 | MTR_8g016150 | 37.576 | 165 | 95 | 1 | 7 | 163 | 2 | 166 | 9.74e-24 | 92.8 |
MS.gene50581.t1 | MTR_1g093090 | 45.679 | 81 | 42 | 1 | 33 | 111 | 24 | 104 | 6.58e-16 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50581.t1 | AT1G04260 | 40.909 | 176 | 104 | 0 | 18 | 193 | 7 | 182 | 8.18e-45 | 147 |
MS.gene50581.t1 | AT1G55190 | 51.049 | 143 | 70 | 0 | 26 | 168 | 31 | 173 | 2.07e-39 | 133 |
MS.gene50581.t1 | AT3G13710 | 41.566 | 166 | 83 | 1 | 17 | 168 | 8 | 173 | 5.89e-38 | 129 |
MS.gene50581.t1 | AT3G13720 | 49.219 | 128 | 65 | 0 | 41 | 168 | 46 | 173 | 7.63e-33 | 116 |
MS.gene50581.t1 | AT1G08770 | 40.678 | 177 | 101 | 2 | 17 | 191 | 33 | 207 | 1.68e-32 | 116 |
MS.gene50581.t1 | AT5G01640 | 38.667 | 150 | 90 | 1 | 33 | 180 | 56 | 205 | 2.14e-28 | 106 |
MS.gene50581.t1 | AT2G40380 | 42.553 | 141 | 79 | 1 | 42 | 180 | 57 | 197 | 2.78e-26 | 100 |
MS.gene50581.t1 | AT2G38360 | 34.965 | 143 | 91 | 1 | 41 | 181 | 64 | 206 | 2.90e-26 | 100 |
MS.gene50581.t1 | AT5G56230 | 34.078 | 179 | 109 | 4 | 6 | 177 | 6 | 182 | 5.29e-24 | 94.0 |
MS.gene50581.t1 | AT1G17700 | 39.583 | 144 | 87 | 0 | 26 | 169 | 31 | 174 | 1.04e-23 | 92.8 |
MS.gene50581.t1 | AT3G56110 | 38.095 | 147 | 89 | 1 | 33 | 177 | 46 | 192 | 3.75e-23 | 92.0 |
MS.gene50581.t1 | AT3G56110 | 38.095 | 147 | 89 | 1 | 33 | 177 | 46 | 192 | 3.75e-23 | 92.0 |
MS.gene50581.t1 | AT3G56110 | 38.095 | 147 | 89 | 1 | 33 | 177 | 46 | 192 | 3.75e-23 | 92.0 |
MS.gene50581.t1 | AT3G56110 | 38.095 | 147 | 89 | 1 | 33 | 177 | 46 | 192 | 3.75e-23 | 92.0 |
MS.gene50581.t1 | AT5G07110 | 35.172 | 145 | 92 | 1 | 33 | 175 | 46 | 190 | 1.50e-21 | 88.2 |
MS.gene50581.t1 | AT5G05380 | 42.029 | 138 | 78 | 1 | 42 | 177 | 58 | 195 | 3.87e-21 | 87.0 |
MS.gene50581.t1 | AT5G05380 | 42.029 | 138 | 78 | 1 | 42 | 177 | 101 | 238 | 8.40e-21 | 87.0 |
MS.gene50581.t1 | AT5G05380 | 42.029 | 138 | 78 | 1 | 42 | 177 | 109 | 246 | 8.89e-21 | 87.0 |
MS.gene50581.t1 | AT5G05380 | 42.029 | 138 | 78 | 1 | 42 | 177 | 125 | 262 | 1.50e-20 | 87.0 |
MS.gene50581.t1 | AT1G55640 | 30.147 | 136 | 95 | 0 | 35 | 170 | 42 | 177 | 5.32e-16 | 72.8 |
MS.gene50581.t1 | AT4G29658 | 32.394 | 142 | 92 | 1 | 33 | 170 | 36 | 177 | 6.56e-13 | 64.7 |
Find 71 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGAAGAAGAGATCTTTGA+TGG | 0.279860 | 1.2:+54074693 | MS.gene50581:CDS |
TTGGAAGGTGGGGTGGCTCG+TGG | 0.316077 | 1.2:-54074255 | None:intergenic |
GTGAGGGAGAGTGAAGGATT+GGG | 0.331674 | 1.2:-54074316 | None:intergenic |
GGTAGAGGAGGCTGAGGAAG+AGG | 0.352812 | 1.2:-54074419 | None:intergenic |
GAAGGGAGAGAGTTGTAAGT+TGG | 0.355663 | 1.2:-54074219 | None:intergenic |
TCCTCGCCGTCTTCGCCGCT+TGG | 0.362575 | 1.2:+54074463 | MS.gene50581:CDS |
CACGTGGGGTAGTTGGAAGG+TGG | 0.378025 | 1.2:-54074267 | None:intergenic |
TGAGGGAGAGAGGGTGGTAG+AGG | 0.379952 | 1.2:-54074434 | None:intergenic |
GGTGATTTACTTTCAGTTGT+TGG | 0.381427 | 1.2:+54074714 | MS.gene50581:CDS |
GTAAGTTGGAGTGGGATAGA+TGG | 0.383602 | 1.2:-54074205 | None:intergenic |
GGAAGGTGGGGTGGCTCGTG+GGG | 0.389846 | 1.2:-54074253 | None:intergenic |
AGTGAGGGAGAGTGAAGGAT+TGG | 0.391419 | 1.2:-54074317 | None:intergenic |
CACTCGTCTTCACCGGCGTC+TGG | 0.418391 | 1.2:+54074586 | MS.gene50581:CDS |
GGAGGCTGAGGAAGAGGATG+AGG | 0.423523 | 1.2:-54074413 | None:intergenic |
GAAGAACCAAGCGGCGAAGA+CGG | 0.427174 | 1.2:-54074469 | None:intergenic |
GGGGTAGTTGGAAGGTGGGG+TGG | 0.431865 | 1.2:-54074262 | None:intergenic |
GAGGGTGGTAGAGGAGGCTG+AGG | 0.433438 | 1.2:-54074425 | None:intergenic |
TGGAAGGTGGGGTGGCTCGT+GGG | 0.446589 | 1.2:-54074254 | None:intergenic |
TGGGAGGCACGTGGGGTAGT+TGG | 0.454379 | 1.2:-54074274 | None:intergenic |
GGGAGAGAGGGTGGTAGAGG+AGG | 0.457006 | 1.2:-54074431 | None:intergenic |
AGGAAGACGATGAGGGAGAG+AGG | 0.457920 | 1.2:-54074444 | None:intergenic |
TGAGGGAGAGTGAAGGATTG+GGG | 0.470927 | 1.2:-54074315 | None:intergenic |
CGTGGGGAAGTTGAGTTTGA+AGG | 0.471719 | 1.2:-54074237 | None:intergenic |
GGCTGAGGAAGAGGATGAGG+AGG | 0.474629 | 1.2:-54074410 | None:intergenic |
CGTGGGGTAGTTGGAAGGTG+GGG | 0.481724 | 1.2:-54074265 | None:intergenic |
GTCCTCGTGTCGGTGCTCTT+CGG | 0.484352 | 1.2:+54074615 | MS.gene50581:CDS |
CACTCTCCCTCACTCCCTCT+CGG | 0.500333 | 1.2:+54074326 | MS.gene50581:CDS |
GAGAGAGTTGTAAGTTGGAG+TGG | 0.502950 | 1.2:-54074214 | None:intergenic |
AGTTGATGCGGAAGTGGTTG+AGG | 0.503368 | 1.2:-54074374 | None:intergenic |
AGACGATGAGGGAGAGAGGG+TGG | 0.503783 | 1.2:-54074440 | None:intergenic |
GTGGTTTCCGAGAGGGAGTG+AGG | 0.506581 | 1.2:-54074333 | None:intergenic |
CTTCTTCTTCCGTGACCACC+CGG | 0.507928 | 1.2:+54074494 | MS.gene50581:CDS |
TGGTTTCCGAGAGGGAGTGA+GGG | 0.512955 | 1.2:-54074332 | None:intergenic |
AGAGAGTTGTAAGTTGGAGT+GGG | 0.514057 | 1.2:-54074213 | None:intergenic |
ACGTGGGGTAGTTGGAAGGT+GGG | 0.516248 | 1.2:-54074266 | None:intergenic |
GAGGATGAGGAGGATGATGA+TGG | 0.521356 | 1.2:-54074400 | None:intergenic |
AGAGTAGAATGAGGAGGAAG+CGG | 0.522523 | 1.2:-54074545 | None:intergenic |
AGCGGTTGTCGATGGTGAAA+CGG | 0.524582 | 1.2:-54074527 | None:intergenic |
GTCGTCGCACTCGTCTTCAC+CGG | 0.525854 | 1.2:+54074579 | MS.gene50581:CDS |
TCTAGTGTACCTCGTTCGCT+TGG | 0.528961 | 1.2:-54074751 | None:intergenic |
GTGAAACGGAAGAGGACGAC+CGG | 0.538948 | 1.2:-54074513 | None:intergenic |
AGGCACGTGGGGTAGTTGGA+AGG | 0.547236 | 1.2:-54074270 | None:intergenic |
AGAGGACGACCGGGTGGTCA+CGG | 0.547677 | 1.2:-54074503 | None:intergenic |
GTGGGGAAGTTGAGTTTGAA+GGG | 0.558559 | 1.2:-54074236 | None:intergenic |
TGTCGATGGTGAAACGGAAG+AGG | 0.559389 | 1.2:-54074521 | None:intergenic |
ACGGAGGGTGGTTTCCGAGA+GGG | 0.561374 | 1.2:-54074340 | None:intergenic |
GTCGGTGCTCTTCGGTGCTG+CGG | 0.562357 | 1.2:+54074623 | MS.gene50581:CDS |
GAGGAGGAAGCGGTTGTCGA+TGG | 0.562502 | 1.2:-54074535 | None:intergenic |
CTGGCTTAACGTCCTCGTGT+CGG | 0.579627 | 1.2:+54074605 | MS.gene50581:CDS |
GGTGCTCTTCGGTGCTGCGG+TGG | 0.582059 | 1.2:+54074626 | MS.gene50581:CDS |
TGGCGTAGTTGATGCGGAAG+TGG | 0.582115 | 1.2:-54074380 | None:intergenic |
GAGGGAGTGAGGGAGAGTGA+AGG | 0.592200 | 1.2:-54074322 | None:intergenic |
GGAAGACGATGAGGGAGAGA+GGG | 0.595788 | 1.2:-54074443 | None:intergenic |
GGGCAGAGAGTAGAATGAGG+AGG | 0.599319 | 1.2:-54074551 | None:intergenic |
CACCGAAGAGCACCGACACG+AGG | 0.603948 | 1.2:-54074617 | None:intergenic |
TTTGACATGGGAGGCACGTG+GGG | 0.604972 | 1.2:-54074281 | None:intergenic |
GGTGGTCACGGAAGAAGAAG+AGG | 0.608401 | 1.2:-54074491 | None:intergenic |
ACCAAGCGGCGAAGACGGCG+AGG | 0.613183 | 1.2:-54074464 | None:intergenic |
TGAGGGCAGAGAGTAGAATG+AGG | 0.616996 | 1.2:-54074554 | None:intergenic |
GACGAGTGCGACGACTGTGA+GGG | 0.618599 | 1.2:-54074571 | None:intergenic |
GATTTACTTTCAGTTGTTGG+TGG | 0.624407 | 1.2:+54074717 | MS.gene50581:CDS |
AGACGGCGAGGAAGACGATG+AGG | 0.634290 | 1.2:-54074452 | None:intergenic |
GACGGCGAGGAAGACGATGA+GGG | 0.639915 | 1.2:-54074451 | None:intergenic |
TGAAACGGAAGAGGACGACC+GGG | 0.651587 | 1.2:-54074512 | None:intergenic |
TACGGAGGGTGGTTTCCGAG+AGG | 0.666716 | 1.2:-54074341 | None:intergenic |
AGACGAGTGCGACGACTGTG+AGG | 0.671808 | 1.2:-54074572 | None:intergenic |
TGATGATGGCGTAGTTGATG+CGG | 0.679858 | 1.2:-54074386 | None:intergenic |
GCTTCAATACCAAGCGAACG+AGG | 0.681179 | 1.2:+54074742 | MS.gene50581:CDS |
GAAGAAGAGGAAGAACCAAG+CGG | 0.686040 | 1.2:-54074478 | None:intergenic |
GAGGACGTTAAGCCAGACGC+CGG | 0.719336 | 1.2:-54074598 | None:intergenic |
AACGGAAGAGGACGACCGGG+TGG | 0.723292 | 1.2:-54074509 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
GATGAAGAAGAGATCTTTGA+TGG | + | chr1.2:54074693-54074712 | MS.gene50581:CDS | 35.0% | |
GATTTACTTTCAGTTGTTGG+TGG | + | chr1.2:54074717-54074736 | MS.gene50581:CDS | 35.0% | |
GGTGATTTACTTTCAGTTGT+TGG | + | chr1.2:54074714-54074733 | MS.gene50581:CDS | 35.0% | |
!! | GAGTGAAGAAGTTTTGACAT+GGG | - | chr1.2:54074296-54074315 | None:intergenic | 35.0% |
! | AGAGAGTTGTAAGTTGGAGT+GGG | - | chr1.2:54074216-54074235 | None:intergenic | 40.0% |
! | GGTTGAGGTTGCGTTTTATA+CGG | - | chr1.2:54074362-54074381 | None:intergenic | 40.0% |
!! | GGAGTGAAGAAGTTTTGACA+TGG | - | chr1.2:54074297-54074316 | None:intergenic | 40.0% |
!! | TGAAGAAGTTTTGACATGGG+AGG | - | chr1.2:54074293-54074312 | None:intergenic | 40.0% |
AGAGTAGAATGAGGAGGAAG+CGG | - | chr1.2:54074548-54074567 | None:intergenic | 45.0% | |
GAAGAAGAGGAAGAACCAAG+CGG | - | chr1.2:54074481-54074500 | None:intergenic | 45.0% | |
GAAGGGAGAGAGTTGTAAGT+TGG | - | chr1.2:54074222-54074241 | None:intergenic | 45.0% | |
GTGGGGAAGTTGAGTTTGAA+GGG | - | chr1.2:54074239-54074258 | None:intergenic | 45.0% | |
! | GAGAGAGTTGTAAGTTGGAG+TGG | - | chr1.2:54074217-54074236 | None:intergenic | 45.0% |
! | GAGGTTGCGTTTTATACGGA+GGG | - | chr1.2:54074358-54074377 | None:intergenic | 45.0% |
! | GTAAGTTGGAGTGGGATAGA+TGG | - | chr1.2:54074208-54074227 | None:intergenic | 45.0% |
! | TGAGGTTGCGTTTTATACGG+AGG | - | chr1.2:54074359-54074378 | None:intergenic | 45.0% |
!! | TGATGATGGCGTAGTTGATG+CGG | - | chr1.2:54074389-54074408 | None:intergenic | 45.0% |
!! | TTGTTTTGCATGCGGCGTTT+CGG | + | chr1.2:54074649-54074668 | MS.gene50581:CDS | 45.0% |
AGCGGTTGTCGATGGTGAAA+CGG | - | chr1.2:54074530-54074549 | None:intergenic | 50.0% | |
AGTGAGGGAGAGTGAAGGAT+TGG | - | chr1.2:54074320-54074339 | None:intergenic | 50.0% | |
CGTGGGGAAGTTGAGTTTGA+AGG | - | chr1.2:54074240-54074259 | None:intergenic | 50.0% | |
GAGGATGAGGAGGATGATGA+TGG | - | chr1.2:54074403-54074422 | None:intergenic | 50.0% | |
GCTTCAATACCAAGCGAACG+AGG | + | chr1.2:54074742-54074761 | MS.gene50581:CDS | 50.0% | |
GTGAGGGAGAGTGAAGGATT+GGG | - | chr1.2:54074319-54074338 | None:intergenic | 50.0% | |
TCTAGTGTACCTCGTTCGCT+TGG | - | chr1.2:54074754-54074773 | None:intergenic | 50.0% | |
TGAGGGAGAGTGAAGGATTG+GGG | - | chr1.2:54074318-54074337 | None:intergenic | 50.0% | |
TGAGGGCAGAGAGTAGAATG+AGG | - | chr1.2:54074557-54074576 | None:intergenic | 50.0% | |
TGTCGATGGTGAAACGGAAG+AGG | - | chr1.2:54074524-54074543 | None:intergenic | 50.0% | |
! | AGTTGATGCGGAAGTGGTTG+AGG | - | chr1.2:54074377-54074396 | None:intergenic | 50.0% |
! | GTTGCGTTTTATACGGAGGG+TGG | - | chr1.2:54074355-54074374 | None:intergenic | 50.0% |
!! | TGCGGTGGTTGTTTTGCATG+CGG | + | chr1.2:54074641-54074660 | MS.gene50581:CDS | 50.0% |
!! | TTTTGACATGGGAGGCACGT+GGG | - | chr1.2:54074285-54074304 | None:intergenic | 50.0% |
ACGTGGGGTAGTTGGAAGGT+GGG | - | chr1.2:54074269-54074288 | None:intergenic | 55.0% | |
AGGAAGACGATGAGGGAGAG+AGG | - | chr1.2:54074447-54074466 | None:intergenic | 55.0% | |
CTGGCTTAACGTCCTCGTGT+CGG | + | chr1.2:54074605-54074624 | MS.gene50581:CDS | 55.0% | |
CTTCTTCTTCCGTGACCACC+CGG | + | chr1.2:54074494-54074513 | MS.gene50581:CDS | 55.0% | |
GAAGAACCAAGCGGCGAAGA+CGG | - | chr1.2:54074472-54074491 | None:intergenic | 55.0% | |
GGAAGACGATGAGGGAGAGA+GGG | - | chr1.2:54074446-54074465 | None:intergenic | 55.0% | |
GGGCAGAGAGTAGAATGAGG+AGG | - | chr1.2:54074554-54074573 | None:intergenic | 55.0% | |
GGTGGTCACGGAAGAAGAAG+AGG | - | chr1.2:54074494-54074513 | None:intergenic | 55.0% | |
GTGAAACGGAAGAGGACGAC+CGG | - | chr1.2:54074516-54074535 | None:intergenic | 55.0% | |
TGAAACGGAAGAGGACGACC+GGG | - | chr1.2:54074515-54074534 | None:intergenic | 55.0% | |
TGGTTTCCGAGAGGGAGTGA+GGG | - | chr1.2:54074335-54074354 | None:intergenic | 55.0% | |
! | TGGCGTAGTTGATGCGGAAG+TGG | - | chr1.2:54074383-54074402 | None:intergenic | 55.0% |
! | TTTGACATGGGAGGCACGTG+GGG | - | chr1.2:54074284-54074303 | None:intergenic | 55.0% |
!! | GTTTTGACATGGGAGGCACG+TGG | - | chr1.2:54074286-54074305 | None:intergenic | 55.0% |
ACGGAGGGTGGTTTCCGAGA+GGG | - | chr1.2:54074343-54074362 | None:intergenic | 60.0% | |
AGACGAGTGCGACGACTGTG+AGG | - | chr1.2:54074575-54074594 | None:intergenic | 60.0% | |
AGACGATGAGGGAGAGAGGG+TGG | - | chr1.2:54074443-54074462 | None:intergenic | 60.0% | |
AGACGGCGAGGAAGACGATG+AGG | - | chr1.2:54074455-54074474 | None:intergenic | 60.0% | |
AGGCACGTGGGGTAGTTGGA+AGG | - | chr1.2:54074273-54074292 | None:intergenic | 60.0% | |
CACGTGGGGTAGTTGGAAGG+TGG | - | chr1.2:54074270-54074289 | None:intergenic | 60.0% | |
CACTCTCCCTCACTCCCTCT+CGG | + | chr1.2:54074326-54074345 | MS.gene50581:CDS | 60.0% | |
CGTGGGGTAGTTGGAAGGTG+GGG | - | chr1.2:54074268-54074287 | None:intergenic | 60.0% | |
GACGAGTGCGACGACTGTGA+GGG | - | chr1.2:54074574-54074593 | None:intergenic | 60.0% | |
GACGGCGAGGAAGACGATGA+GGG | - | chr1.2:54074454-54074473 | None:intergenic | 60.0% | |
GAGGACGTTAAGCCAGACGC+CGG | - | chr1.2:54074601-54074620 | None:intergenic | 60.0% | |
GAGGAGGAAGCGGTTGTCGA+TGG | - | chr1.2:54074538-54074557 | None:intergenic | 60.0% | |
GAGGGAGTGAGGGAGAGTGA+AGG | - | chr1.2:54074325-54074344 | None:intergenic | 60.0% | |
GGAGGCTGAGGAAGAGGATG+AGG | - | chr1.2:54074416-54074435 | None:intergenic | 60.0% | |
GGCTGAGGAAGAGGATGAGG+AGG | - | chr1.2:54074413-54074432 | None:intergenic | 60.0% | |
GGTAGAGGAGGCTGAGGAAG+AGG | - | chr1.2:54074422-54074441 | None:intergenic | 60.0% | |
GTCGTCGCACTCGTCTTCAC+CGG | + | chr1.2:54074579-54074598 | MS.gene50581:CDS | 60.0% | |
GTGGTTTCCGAGAGGGAGTG+AGG | - | chr1.2:54074336-54074355 | None:intergenic | 60.0% | |
TACGGAGGGTGGTTTCCGAG+AGG | - | chr1.2:54074344-54074363 | None:intergenic | 60.0% | |
TGAGGGAGAGAGGGTGGTAG+AGG | - | chr1.2:54074437-54074456 | None:intergenic | 60.0% | |
! | GTCCTCGTGTCGGTGCTCTT+CGG | + | chr1.2:54074615-54074634 | MS.gene50581:CDS | 60.0% |
AACGGAAGAGGACGACCGGG+TGG | - | chr1.2:54074512-54074531 | None:intergenic | 65.0% | |
AGAGGACGACCGGGTGGTCA+CGG | - | chr1.2:54074506-54074525 | None:intergenic | 65.0% | |
CACTCGTCTTCACCGGCGTC+TGG | + | chr1.2:54074586-54074605 | MS.gene50581:CDS | 65.0% | |
GAGGGTGGTAGAGGAGGCTG+AGG | - | chr1.2:54074428-54074447 | None:intergenic | 65.0% | |
GGGAGAGAGGGTGGTAGAGG+AGG | - | chr1.2:54074434-54074453 | None:intergenic | 65.0% | |
GGGGTAGTTGGAAGGTGGGG+TGG | - | chr1.2:54074265-54074284 | None:intergenic | 65.0% | |
TGGAAGGTGGGGTGGCTCGT+GGG | - | chr1.2:54074257-54074276 | None:intergenic | 65.0% | |
TTGGAAGGTGGGGTGGCTCG+TGG | - | chr1.2:54074258-54074277 | None:intergenic | 65.0% | |
! | TGGGAGGCACGTGGGGTAGT+TGG | - | chr1.2:54074277-54074296 | None:intergenic | 65.0% |
!! | CACCGAAGAGCACCGACACG+AGG | - | chr1.2:54074620-54074639 | None:intergenic | 65.0% |
!! | GTCGGTGCTCTTCGGTGCTG+CGG | + | chr1.2:54074623-54074642 | MS.gene50581:CDS | 65.0% |
ACCAAGCGGCGAAGACGGCG+AGG | - | chr1.2:54074467-54074486 | None:intergenic | 70.0% | |
GGAAGGTGGGGTGGCTCGTG+GGG | - | chr1.2:54074256-54074275 | None:intergenic | 70.0% | |
TCCTCGCCGTCTTCGCCGCT+TGG | + | chr1.2:54074463-54074482 | MS.gene50581:CDS | 70.0% | |
!! | GGTGCTCTTCGGTGCTGCGG+TGG | + | chr1.2:54074626-54074645 | MS.gene50581:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 54074198 | 54074779 | 54074198 | ID=MS.gene50581 |
chr1.2 | mRNA | 54074198 | 54074779 | 54074198 | ID=MS.gene50581.t1;Parent=MS.gene50581 |
chr1.2 | exon | 54074198 | 54074779 | 54074198 | ID=MS.gene50581.t1.exon1;Parent=MS.gene50581.t1 |
chr1.2 | CDS | 54074198 | 54074779 | 54074198 | ID=cds.MS.gene50581.t1;Parent=MS.gene50581.t1 |
Gene Sequence |
Protein sequence |