Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94199.t1 | XP_003616714.2 | 97.2 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 7.10E-101 | 376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94199.t1 | Q9FLB6 | 66.0 | 209 | 66 | 1 | 1 | 209 | 2 | 205 | 1.6e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94199.t1 | G7K792 | 97.2 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 5.1e-101 | 376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76107 | MS.gene94199 | PPI |
| MS.gene49343 | MS.gene94199 | PPI |
| MS.gene036151 | MS.gene94199 | PPI |
| MS.gene51092 | MS.gene94199 | PPI |
| MS.gene94199 | MS.gene39906 | PPI |
| MS.gene49344 | MS.gene94199 | PPI |
| MS.gene50582 | MS.gene94199 | PPI |
| MS.gene020329 | MS.gene94199 | PPI |
| MS.gene50581 | MS.gene94199 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94199.t1 | MTR_5g083490 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 4.86e-147 | 408 |
| MS.gene94199.t1 | MTR_4g014060 | 62.366 | 186 | 69 | 1 | 27 | 211 | 35 | 220 | 6.94e-82 | 243 |
| MS.gene94199.t1 | MTR_0562s0010 | 62.366 | 186 | 69 | 1 | 27 | 211 | 35 | 220 | 6.94e-82 | 243 |
| MS.gene94199.t1 | MTR_7g096220 | 42.614 | 176 | 97 | 3 | 36 | 210 | 24 | 196 | 8.13e-40 | 135 |
| MS.gene94199.t1 | MTR_3g031070 | 44.767 | 172 | 90 | 1 | 20 | 191 | 2 | 168 | 4.65e-32 | 115 |
| MS.gene94199.t1 | MTR_2g100260 | 34.756 | 164 | 97 | 4 | 37 | 194 | 22 | 181 | 3.69e-29 | 107 |
| MS.gene94199.t1 | MTR_1g070480 | 39.490 | 157 | 93 | 1 | 48 | 204 | 28 | 182 | 1.55e-27 | 103 |
| MS.gene94199.t1 | MTR_2g100270 | 38.068 | 176 | 104 | 2 | 19 | 194 | 6 | 176 | 2.09e-24 | 95.5 |
| MS.gene94199.t1 | MTR_6g092690 | 29.508 | 183 | 121 | 2 | 11 | 193 | 2 | 176 | 2.20e-24 | 95.9 |
| MS.gene94199.t1 | MTR_1g080760 | 42.949 | 156 | 83 | 2 | 52 | 207 | 35 | 184 | 7.81e-24 | 94.4 |
| MS.gene94199.t1 | MTR_8g016150 | 37.126 | 167 | 103 | 1 | 19 | 185 | 2 | 166 | 1.59e-23 | 93.2 |
| MS.gene94199.t1 | MTR_1g093090 | 37.179 | 156 | 97 | 1 | 37 | 191 | 8 | 163 | 6.25e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94199.t1 | AT2G38360 | 62.562 | 203 | 75 | 1 | 2 | 203 | 4 | 206 | 1.77e-95 | 278 |
| MS.gene94199.t1 | AT5G05380 | 66.667 | 201 | 62 | 1 | 1 | 201 | 53 | 248 | 2.87e-86 | 256 |
| MS.gene94199.t1 | AT5G05380 | 66.667 | 201 | 62 | 1 | 1 | 201 | 45 | 240 | 3.18e-86 | 256 |
| MS.gene94199.t1 | AT5G05380 | 66.667 | 201 | 62 | 1 | 1 | 201 | 2 | 197 | 3.51e-86 | 254 |
| MS.gene94199.t1 | AT3G56110 | 64.677 | 201 | 64 | 1 | 1 | 201 | 1 | 194 | 6.30e-86 | 253 |
| MS.gene94199.t1 | AT3G56110 | 64.677 | 201 | 64 | 1 | 1 | 201 | 1 | 194 | 6.30e-86 | 253 |
| MS.gene94199.t1 | AT3G56110 | 64.677 | 201 | 64 | 1 | 1 | 201 | 1 | 194 | 6.30e-86 | 253 |
| MS.gene94199.t1 | AT3G56110 | 64.677 | 201 | 64 | 1 | 1 | 201 | 1 | 194 | 6.30e-86 | 253 |
| MS.gene94199.t1 | AT5G05380 | 66.667 | 201 | 62 | 1 | 1 | 201 | 69 | 264 | 6.83e-86 | 256 |
| MS.gene94199.t1 | AT5G01640 | 51.942 | 206 | 90 | 2 | 2 | 202 | 4 | 205 | 4.85e-77 | 231 |
| MS.gene94199.t1 | AT2G40380 | 62.871 | 202 | 69 | 1 | 2 | 203 | 3 | 198 | 6.27e-74 | 223 |
| MS.gene94199.t1 | AT5G07110 | 55.738 | 183 | 77 | 1 | 19 | 197 | 8 | 190 | 2.88e-59 | 186 |
| MS.gene94199.t1 | AT1G55190 | 38.251 | 183 | 104 | 4 | 22 | 200 | 9 | 186 | 1.53e-33 | 119 |
| MS.gene94199.t1 | AT4G00005 | 57.000 | 100 | 43 | 0 | 74 | 173 | 2 | 101 | 7.04e-32 | 112 |
| MS.gene94199.t1 | AT3G13710 | 34.659 | 176 | 109 | 2 | 19 | 194 | 8 | 177 | 2.08e-28 | 105 |
| MS.gene94199.t1 | AT1G08770 | 32.716 | 162 | 109 | 0 | 38 | 199 | 34 | 195 | 5.40e-27 | 102 |
| MS.gene94199.t1 | AT1G17700 | 36.994 | 173 | 107 | 1 | 21 | 193 | 6 | 176 | 2.07e-24 | 95.5 |
| MS.gene94199.t1 | AT3G13720 | 35.443 | 158 | 100 | 1 | 37 | 194 | 22 | 177 | 2.56e-23 | 92.8 |
| MS.gene94199.t1 | AT5G56230 | 32.967 | 182 | 115 | 3 | 22 | 198 | 2 | 181 | 3.58e-23 | 92.4 |
| MS.gene94199.t1 | AT1G04260 | 30.952 | 168 | 114 | 1 | 37 | 204 | 6 | 171 | 1.80e-21 | 87.8 |
| MS.gene94199.t1 | AT1G55640 | 31.847 | 157 | 104 | 2 | 37 | 192 | 23 | 177 | 1.77e-19 | 82.8 |
| MS.gene94199.t1 | AT4G29658 | 31.250 | 160 | 105 | 2 | 35 | 191 | 18 | 175 | 3.51e-17 | 76.6 |
Find 81 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTGCTGGTGTTGGATA+TGG | 0.240654 | 5.4:+66187643 | None:intergenic |
| TATGCTTCGGCAAAAGTTTC+GGG | 0.264586 | 5.4:+66187491 | None:intergenic |
| ACGGGATTCTTATCGTTTCT+TGG | 0.275846 | 5.4:-66187104 | MS.gene94199:CDS |
| TGGCGATCGGTGGTTGAGAT+TGG | 0.282317 | 5.4:+66187621 | None:intergenic |
| CTGCGAGAGCGAAGATGATT+AGG | 0.284772 | 5.4:+66187420 | None:intergenic |
| ATGTGAAATTCTTGCGGATT+CGG | 0.315878 | 5.4:+66187465 | None:intergenic |
| GTATGCTTCGGCAAAAGTTT+CGG | 0.329778 | 5.4:+66187490 | None:intergenic |
| TGGTCCTTGTTCGTTCTTCT+CGG | 0.331951 | 5.4:-66187377 | MS.gene94199:CDS |
| GTGGATTGGGAAGTGGAAAC+GGG | 0.332376 | 5.4:+66187665 | None:intergenic |
| GAAATGAAGGCGCGGAAAGC+GGG | 0.344583 | 5.4:+66187596 | None:intergenic |
| AGGACCATGGATGTGTGATT+AGG | 0.355218 | 5.4:+66187393 | None:intergenic |
| TGTGAAATTCTTGCGGATTC+GGG | 0.360685 | 5.4:+66187466 | None:intergenic |
| GGTGTTGGATATGGTGGATT+GGG | 0.368044 | 5.4:+66187652 | None:intergenic |
| GGACCATGGATGTGTGATTA+GGG | 0.378240 | 5.4:+66187394 | None:intergenic |
| ATCATCAAGAAACAAATCTT+CGG | 0.379952 | 5.4:+66187142 | None:intergenic |
| GTTGTTGATCTCTGCGCTTA+TGG | 0.381739 | 5.4:-66187207 | MS.gene94199:CDS |
| AGATTTGTTTCTTGATGATC+AGG | 0.389550 | 5.4:-66187138 | MS.gene94199:CDS |
| GGCGATCGGTGGTTGAGATT+GGG | 0.393998 | 5.4:+66187622 | None:intergenic |
| GGTGGATTGGGAAGTGGAAA+CGG | 0.394090 | 5.4:+66187664 | None:intergenic |
| TGGTGTTGGATATGGTGGAT+TGG | 0.416693 | 5.4:+66187651 | None:intergenic |
| GGTGCTGGTGTTGGATATGG+TGG | 0.417359 | 5.4:+66187646 | None:intergenic |
| TGAGGAACGGTCGATGAGTT+CGG | 0.422158 | 5.4:+66187523 | None:intergenic |
| AGATTGGGTGGTGCTGGTGT+TGG | 0.426571 | 5.4:+66187637 | None:intergenic |
| GGAGGAGATGCGGGAAATGA+AGG | 0.426625 | 5.4:+66187583 | None:intergenic |
| TTCTCGGTCTTCTTGCTTCG+TGG | 0.433749 | 5.4:-66187361 | MS.gene94199:CDS |
| TCATCAAGAAACAAATCTTC+GGG | 0.436107 | 5.4:+66187143 | None:intergenic |
| TTGATCTCTGCGCTTATGGT+TGG | 0.438891 | 5.4:-66187203 | MS.gene94199:CDS |
| CTCTGCGCTTATGGTTGGAT+TGG | 0.443122 | 5.4:-66187198 | MS.gene94199:CDS |
| TTCGGACCATGGACGGCGTT+GGG | 0.443176 | 5.4:+66187541 | None:intergenic |
| GGAAATGAAGGCGCGGAAAG+CGG | 0.444594 | 5.4:+66187595 | None:intergenic |
| TGGTTGAGATTGGGTGGTGC+TGG | 0.448544 | 5.4:+66187631 | None:intergenic |
| GATCAACCTCTCGTTCTCTT+CGG | 0.458353 | 5.4:-66187311 | MS.gene94199:CDS |
| GTTGTGTTTCTTACTGCCGT+TGG | 0.462273 | 5.4:-66187233 | MS.gene94199:CDS |
| CCTTCTCCCAACGCCGTCCA+TGG | 0.472100 | 5.4:-66187547 | MS.gene94199:CDS |
| GAAGGCTTGACGGAGGGAGG+AGG | 0.474425 | 5.4:+66187565 | None:intergenic |
| GTGGAAACGGGGAGCGTCGG+TGG | 0.477416 | 5.4:+66187677 | None:intergenic |
| TGCGAGAGCGAAGATGATTA+GGG | 0.477760 | 5.4:+66187421 | None:intergenic |
| GAGCGAAGATGATTAGGGTT+AGG | 0.478271 | 5.4:+66187426 | None:intergenic |
| GACGGAGGGAGGAGGAGATG+CGG | 0.481200 | 5.4:+66187573 | None:intergenic |
| AATGAAGGCGCGGAAAGCGG+GGG | 0.481252 | 5.4:+66187598 | None:intergenic |
| ACGGAGGGAGGAGGAGATGC+GGG | 0.483044 | 5.4:+66187574 | None:intergenic |
| GCGGATTCGGGAGTATGCTT+CGG | 0.487170 | 5.4:+66187478 | None:intergenic |
| CCATGGACGGCGTTGGGAGA+AGG | 0.489766 | 5.4:+66187547 | None:intergenic |
| GGCGTTGGGAGAAGGCTTGA+CGG | 0.493276 | 5.4:+66187555 | None:intergenic |
| GGATATGGTGGATTGGGAAG+TGG | 0.503254 | 5.4:+66187658 | None:intergenic |
| GATCAGGAGGTGAGTAGTAC+GGG | 0.507080 | 5.4:-66187122 | MS.gene94199:CDS |
| TTGCAGATCGTGAAACGCTA+GGG | 0.509931 | 5.4:-66187280 | MS.gene94199:CDS |
| AGTTTCGGGACGGGAGATTG+AGG | 0.511913 | 5.4:+66187505 | None:intergenic |
| TTCGGCAAAAGTTTCGGGAC+GGG | 0.512057 | 5.4:+66187496 | None:intergenic |
| TTGGCGATTGTGTGTGCGCA+TGG | 0.516927 | 5.4:-66187179 | MS.gene94199:CDS |
| GAAGAGAACGAGAGGTTGAT+CGG | 0.520068 | 5.4:+66187313 | None:intergenic |
| GGATTCTTATCGTTTCTTGG+TGG | 0.523419 | 5.4:-66187101 | MS.gene94199:CDS |
| TGATCAGGAGGTGAGTAGTA+CGG | 0.525246 | 5.4:-66187123 | MS.gene94199:CDS |
| AACGGGGAGCGTCGGTGGAG+AGG | 0.526183 | 5.4:+66187682 | None:intergenic |
| TTGAATCGCGGCGTTAGCAG+CGG | 0.532993 | 5.4:+66187073 | None:intergenic |
| AAATGAAGGCGCGGAAAGCG+GGG | 0.549250 | 5.4:+66187597 | None:intergenic |
| TTTGCAGATCGTGAAACGCT+AGG | 0.552729 | 5.4:-66187281 | MS.gene94199:CDS |
| GTTGATCGGAAGGACGGAAG+AGG | 0.556915 | 5.4:+66187327 | None:intergenic |
| GTTCGGACCATGGACGGCGT+TGG | 0.557893 | 5.4:+66187540 | None:intergenic |
| TTGGGAGAAGGCTTGACGGA+GGG | 0.564649 | 5.4:+66187559 | None:intergenic |
| GATCGGTGGTTGAGATTGGG+TGG | 0.577090 | 5.4:+66187625 | None:intergenic |
| CGATGAGTTCGGACCATGGA+CGG | 0.577381 | 5.4:+66187534 | None:intergenic |
| GGAGAAGGCTTGACGGAGGG+AGG | 0.578616 | 5.4:+66187562 | None:intergenic |
| AAGACCGAGAAGAACGAACA+AGG | 0.583542 | 5.4:+66187373 | None:intergenic |
| AGAACGAGAGGTTGATCGGA+AGG | 0.584166 | 5.4:+66187317 | None:intergenic |
| GAAGTGGAAACGGGGAGCGT+CGG | 0.585554 | 5.4:+66187674 | None:intergenic |
| CGAGAGGTTGATCGGAAGGA+CGG | 0.591390 | 5.4:+66187321 | None:intergenic |
| GAAAGTATGTGAAATTCTTG+CGG | 0.592085 | 5.4:+66187459 | None:intergenic |
| TTTGTTTCTTGATGATCAGG+AGG | 0.597146 | 5.4:-66187135 | MS.gene94199:CDS |
| CAATTACACGCGTTGAATCG+CGG | 0.603845 | 5.4:+66187061 | None:intergenic |
| CTTCGGCAAAAGTTTCGGGA+CGG | 0.611941 | 5.4:+66187495 | None:intergenic |
| TTTCCCTAATCACACATCCA+TGG | 0.630889 | 5.4:-66187397 | MS.gene94199:CDS |
| CGGTCGATGAGTTCGGACCA+TGG | 0.637245 | 5.4:+66187530 | None:intergenic |
| AGAAGAACGAACAAGGACCA+TGG | 0.638113 | 5.4:+66187380 | None:intergenic |
| GTTGGGAGAAGGCTTGACGG+AGG | 0.642320 | 5.4:+66187558 | None:intergenic |
| GTGCGTCCGAAGAGAACGAG+AGG | 0.644143 | 5.4:+66187305 | None:intergenic |
| TGAAACGCTAGGGATTCTTG+TGG | 0.657877 | 5.4:-66187270 | MS.gene94199:CDS |
| AGAGATCAACAACGATCCAA+CGG | 0.666421 | 5.4:+66187217 | None:intergenic |
| TGGATTGGGAAGTGGAAACG+GGG | 0.667490 | 5.4:+66187666 | None:intergenic |
| AGATGCGGGAAATGAAGGCG+CGG | 0.688209 | 5.4:+66187588 | None:intergenic |
| CGGGACGGGAGATTGAGGAA+CGG | 0.722451 | 5.4:+66187510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATCAAGAAACAAATCTT+CGG | + | chr5.4:66187611-66187630 | None:intergenic | 25.0% |
| TCATCAAGAAACAAATCTTC+GGG | + | chr5.4:66187610-66187629 | None:intergenic | 30.0% | |
| ! | AGATTTGTTTCTTGATGATC+AGG | - | chr5.4:66187612-66187631 | MS.gene94199:CDS | 30.0% |
| ! | GAAAGTATGTGAAATTCTTG+CGG | + | chr5.4:66187294-66187313 | None:intergenic | 30.0% |
| ATGTGAAATTCTTGCGGATT+CGG | + | chr5.4:66187288-66187307 | None:intergenic | 35.0% | |
| ! | TTTGTTTCTTGATGATCAGG+AGG | - | chr5.4:66187615-66187634 | MS.gene94199:CDS | 35.0% |
| ACGGGATTCTTATCGTTTCT+TGG | - | chr5.4:66187646-66187665 | MS.gene94199:CDS | 40.0% | |
| AGAGATCAACAACGATCCAA+CGG | + | chr5.4:66187536-66187555 | None:intergenic | 40.0% | |
| GGATTCTTATCGTTTCTTGG+TGG | - | chr5.4:66187649-66187668 | MS.gene94199:CDS | 40.0% | |
| GTATGCTTCGGCAAAAGTTT+CGG | + | chr5.4:66187263-66187282 | None:intergenic | 40.0% | |
| TATGCTTCGGCAAAAGTTTC+GGG | + | chr5.4:66187262-66187281 | None:intergenic | 40.0% | |
| TGTGAAATTCTTGCGGATTC+GGG | + | chr5.4:66187287-66187306 | None:intergenic | 40.0% | |
| TTTCCCTAATCACACATCCA+TGG | - | chr5.4:66187353-66187372 | MS.gene94199:CDS | 40.0% | |
| AAGACCGAGAAGAACGAACA+AGG | + | chr5.4:66187380-66187399 | None:intergenic | 45.0% | |
| AGAAGAACGAACAAGGACCA+TGG | + | chr5.4:66187373-66187392 | None:intergenic | 45.0% | |
| AGGACCATGGATGTGTGATT+AGG | + | chr5.4:66187360-66187379 | None:intergenic | 45.0% | |
| GAGCGAAGATGATTAGGGTT+AGG | + | chr5.4:66187327-66187346 | None:intergenic | 45.0% | |
| GATCAACCTCTCGTTCTCTT+CGG | - | chr5.4:66187439-66187458 | MS.gene94199:CDS | 45.0% | |
| GGACCATGGATGTGTGATTA+GGG | + | chr5.4:66187359-66187378 | None:intergenic | 45.0% | |
| GTTGTGTTTCTTACTGCCGT+TGG | - | chr5.4:66187517-66187536 | MS.gene94199:CDS | 45.0% | |
| GTTGTTGATCTCTGCGCTTA+TGG | - | chr5.4:66187543-66187562 | MS.gene94199:CDS | 45.0% | |
| TGAAACGCTAGGGATTCTTG+TGG | - | chr5.4:66187480-66187499 | MS.gene94199:CDS | 45.0% | |
| TGATCAGGAGGTGAGTAGTA+CGG | - | chr5.4:66187627-66187646 | MS.gene94199:CDS | 45.0% | |
| TGCGAGAGCGAAGATGATTA+GGG | + | chr5.4:66187332-66187351 | None:intergenic | 45.0% | |
| TGGTCCTTGTTCGTTCTTCT+CGG | - | chr5.4:66187373-66187392 | MS.gene94199:CDS | 45.0% | |
| TTGATCTCTGCGCTTATGGT+TGG | - | chr5.4:66187547-66187566 | MS.gene94199:CDS | 45.0% | |
| TTGCAGATCGTGAAACGCTA+GGG | - | chr5.4:66187470-66187489 | MS.gene94199:CDS | 45.0% | |
| TTTGCAGATCGTGAAACGCT+AGG | - | chr5.4:66187469-66187488 | MS.gene94199:CDS | 45.0% | |
| ! | GAAGAGAACGAGAGGTTGAT+CGG | + | chr5.4:66187440-66187459 | None:intergenic | 45.0% |
| !! | GGTGTTGGATATGGTGGATT+GGG | + | chr5.4:66187101-66187120 | None:intergenic | 45.0% |
| !! | TGGTGTTGGATATGGTGGAT+TGG | + | chr5.4:66187102-66187121 | None:intergenic | 45.0% |
| CTCTGCGCTTATGGTTGGAT+TGG | - | chr5.4:66187552-66187571 | MS.gene94199:CDS | 50.0% | |
| CTGCGAGAGCGAAGATGATT+AGG | + | chr5.4:66187333-66187352 | None:intergenic | 50.0% | |
| CTTCGGCAAAAGTTTCGGGA+CGG | + | chr5.4:66187258-66187277 | None:intergenic | 50.0% | |
| GATCAGGAGGTGAGTAGTAC+GGG | - | chr5.4:66187628-66187647 | MS.gene94199:CDS | 50.0% | |
| TGAGGAACGGTCGATGAGTT+CGG | + | chr5.4:66187230-66187249 | None:intergenic | 50.0% | |
| TTCGGCAAAAGTTTCGGGAC+GGG | + | chr5.4:66187257-66187276 | None:intergenic | 50.0% | |
| TTCTCGGTCTTCTTGCTTCG+TGG | - | chr5.4:66187389-66187408 | MS.gene94199:CDS | 50.0% | |
| ! | AGAACGAGAGGTTGATCGGA+AGG | + | chr5.4:66187436-66187455 | None:intergenic | 50.0% |
| ! | TGGATTGGGAAGTGGAAACG+GGG | + | chr5.4:66187087-66187106 | None:intergenic | 50.0% |
| !! | GGATATGGTGGATTGGGAAG+TGG | + | chr5.4:66187095-66187114 | None:intergenic | 50.0% |
| !! | GGTGGATTGGGAAGTGGAAA+CGG | + | chr5.4:66187089-66187108 | None:intergenic | 50.0% |
| !! | GTGGATTGGGAAGTGGAAAC+GGG | + | chr5.4:66187088-66187107 | None:intergenic | 50.0% |
| AGATGCGGGAAATGAAGGCG+CGG | + | chr5.4:66187165-66187184 | None:intergenic | 55.0% | |
| AGTTTCGGGACGGGAGATTG+AGG | + | chr5.4:66187248-66187267 | None:intergenic | 55.0% | |
| CGATGAGTTCGGACCATGGA+CGG | + | chr5.4:66187219-66187238 | None:intergenic | 55.0% | |
| GATCGGTGGTTGAGATTGGG+TGG | + | chr5.4:66187128-66187147 | None:intergenic | 55.0% | |
| GGAGGAGATGCGGGAAATGA+AGG | + | chr5.4:66187170-66187189 | None:intergenic | 55.0% | |
| GGCGATCGGTGGTTGAGATT+GGG | + | chr5.4:66187131-66187150 | None:intergenic | 55.0% | |
| GTTGATCGGAAGGACGGAAG+AGG | + | chr5.4:66187426-66187445 | None:intergenic | 55.0% | |
| TGGCGATCGGTGGTTGAGAT+TGG | + | chr5.4:66187132-66187151 | None:intergenic | 55.0% | |
| TGGTTGAGATTGGGTGGTGC+TGG | + | chr5.4:66187122-66187141 | None:intergenic | 55.0% | |
| TTGAATCGCGGCGTTAGCAG+CGG | + | chr5.4:66187680-66187699 | None:intergenic | 55.0% | |
| TTGGCGATTGTGTGTGCGCA+TGG | - | chr5.4:66187571-66187590 | MS.gene94199:CDS | 55.0% | |
| TTGGGAGAAGGCTTGACGGA+GGG | + | chr5.4:66187194-66187213 | None:intergenic | 55.0% | |
| ! | AAATGAAGGCGCGGAAAGCG+GGG | + | chr5.4:66187156-66187175 | None:intergenic | 55.0% |
| ! | CGAGAGGTTGATCGGAAGGA+CGG | + | chr5.4:66187432-66187451 | None:intergenic | 55.0% |
| ! | GAAATGAAGGCGCGGAAAGC+GGG | + | chr5.4:66187157-66187176 | None:intergenic | 55.0% |
| ! | GCGGATTCGGGAGTATGCTT+CGG | + | chr5.4:66187275-66187294 | None:intergenic | 55.0% |
| ! | GGAAATGAAGGCGCGGAAAG+CGG | + | chr5.4:66187158-66187177 | None:intergenic | 55.0% |
| !! | AGATTGGGTGGTGCTGGTGT+TGG | + | chr5.4:66187116-66187135 | None:intergenic | 55.0% |
| !! | GGTGCTGGTGTTGGATATGG+TGG | + | chr5.4:66187107-66187126 | None:intergenic | 55.0% |
| !! | GGTGGTGCTGGTGTTGGATA+TGG | + | chr5.4:66187110-66187129 | None:intergenic | 55.0% |
| CGGGACGGGAGATTGAGGAA+CGG | + | chr5.4:66187243-66187262 | None:intergenic | 60.0% | |
| CGGTCGATGAGTTCGGACCA+TGG | + | chr5.4:66187223-66187242 | None:intergenic | 60.0% | |
| GTGCGTCCGAAGAGAACGAG+AGG | + | chr5.4:66187448-66187467 | None:intergenic | 60.0% | |
| GTTGGGAGAAGGCTTGACGG+AGG | + | chr5.4:66187195-66187214 | None:intergenic | 60.0% | |
| TTCGGACCATGGACGGCGTT+GGG | + | chr5.4:66187212-66187231 | None:intergenic | 60.0% | |
| ! | AATGAAGGCGCGGAAAGCGG+GGG | + | chr5.4:66187155-66187174 | None:intergenic | 60.0% |
| ! | GAAGTGGAAACGGGGAGCGT+CGG | + | chr5.4:66187079-66187098 | None:intergenic | 60.0% |
| ! | GGCGTTGGGAGAAGGCTTGA+CGG | + | chr5.4:66187198-66187217 | None:intergenic | 60.0% |
| ACGGAGGGAGGAGGAGATGC+GGG | + | chr5.4:66187179-66187198 | None:intergenic | 65.0% | |
| CCTTCTCCCAACGCCGTCCA+TGG | - | chr5.4:66187203-66187222 | MS.gene94199:CDS | 65.0% | |
| GAAGGCTTGACGGAGGGAGG+AGG | + | chr5.4:66187188-66187207 | None:intergenic | 65.0% | |
| GACGGAGGGAGGAGGAGATG+CGG | + | chr5.4:66187180-66187199 | None:intergenic | 65.0% | |
| GGAGAAGGCTTGACGGAGGG+AGG | + | chr5.4:66187191-66187210 | None:intergenic | 65.0% | |
| GTTCGGACCATGGACGGCGT+TGG | + | chr5.4:66187213-66187232 | None:intergenic | 65.0% | |
| ! | CCATGGACGGCGTTGGGAGA+AGG | + | chr5.4:66187206-66187225 | None:intergenic | 65.0% |
| AAAGCGGGGGTGGCGATCGG+TGG | + | chr5.4:66187142-66187161 | None:intergenic | 70.0% | |
| CGGAAAGCGGGGGTGGCGAT+CGG | + | chr5.4:66187145-66187164 | None:intergenic | 70.0% | |
| !! | AACGGGGAGCGTCGGTGGAG+AGG | + | chr5.4:66187071-66187090 | None:intergenic | 70.0% |
| !! | GTGGAAACGGGGAGCGTCGG+TGG | + | chr5.4:66187076-66187095 | None:intergenic | 70.0% |
| ! | GAAGGCGCGGAAAGCGGGGG+TGG | + | chr5.4:66187152-66187171 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66187064 | 66187708 | 66187064 | ID=MS.gene94199 |
| chr5.4 | mRNA | 66187064 | 66187708 | 66187064 | ID=MS.gene94199.t1;Parent=MS.gene94199 |
| chr5.4 | exon | 66187064 | 66187708 | 66187064 | ID=MS.gene94199.t1.exon1;Parent=MS.gene94199.t1 |
| chr5.4 | CDS | 66187064 | 66187708 | 66187064 | ID=cds.MS.gene94199.t1;Parent=MS.gene94199.t1 |
| Gene Sequence |
| Protein sequence |
