Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76107.t1 | XP_003616714.2 | 97.2 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 4.20E-101 | 377.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76107.t1 | Q9FLB6 | 66.5 | 209 | 65 | 1 | 1 | 209 | 2 | 205 | 9.5e-70 | 264.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76107.t1 | G7K792 | 97.2 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 3.0e-101 | 377.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052011 | MS.gene76107 | 0.80619 | 9.28E-50 | -1.69E-46 |
MS.gene054183 | MS.gene76107 | -0.802164 | 6.39E-49 | -1.69E-46 |
MS.gene058142 | MS.gene76107 | -0.804501 | 2.10E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76107 | MS.gene036151 | PPI |
MS.gene76107 | MS.gene94199 | PPI |
MS.gene76107 | MS.gene50581 | PPI |
MS.gene76107 | MS.gene39906 | PPI |
MS.gene76107 | MS.gene020329 | PPI |
MS.gene51092 | MS.gene76107 | PPI |
MS.gene76107 | MS.gene50582 | PPI |
MS.gene76107 | MS.gene49344 | PPI |
MS.gene76107 | MS.gene49343 | PPI |
MS.gene76107 | MS.gene51092 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76107.t1 | MTR_5g083490 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 2.90e-147 | 408 |
MS.gene76107.t1 | MTR_4g014060 | 61.290 | 186 | 71 | 1 | 27 | 211 | 35 | 220 | 1.67e-80 | 240 |
MS.gene76107.t1 | MTR_0562s0010 | 61.290 | 186 | 71 | 1 | 27 | 211 | 35 | 220 | 1.67e-80 | 240 |
MS.gene76107.t1 | MTR_7g096220 | 43.182 | 176 | 96 | 3 | 36 | 210 | 24 | 196 | 3.35e-40 | 136 |
MS.gene76107.t1 | MTR_3g031070 | 45.349 | 172 | 89 | 1 | 20 | 191 | 2 | 168 | 1.34e-32 | 117 |
MS.gene76107.t1 | MTR_1g070480 | 40.764 | 157 | 91 | 1 | 48 | 204 | 28 | 182 | 1.38e-28 | 106 |
MS.gene76107.t1 | MTR_2g100260 | 34.146 | 164 | 98 | 4 | 37 | 194 | 22 | 181 | 1.88e-28 | 105 |
MS.gene76107.t1 | MTR_8g016150 | 37.725 | 167 | 102 | 1 | 19 | 185 | 2 | 166 | 3.05e-24 | 94.7 |
MS.gene76107.t1 | MTR_2g100270 | 38.068 | 176 | 104 | 2 | 19 | 194 | 6 | 176 | 8.06e-24 | 94.0 |
MS.gene76107.t1 | MTR_6g092690 | 28.962 | 183 | 122 | 2 | 11 | 193 | 2 | 176 | 2.03e-23 | 93.2 |
MS.gene76107.t1 | MTR_1g080760 | 42.949 | 156 | 83 | 2 | 52 | 207 | 35 | 184 | 2.56e-23 | 92.8 |
MS.gene76107.t1 | MTR_1g093090 | 36.538 | 156 | 98 | 1 | 37 | 191 | 8 | 163 | 4.67e-18 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76107.t1 | AT2G38360 | 62.562 | 203 | 75 | 1 | 2 | 203 | 4 | 206 | 5.50e-96 | 279 |
MS.gene76107.t1 | AT5G05380 | 67.164 | 201 | 61 | 1 | 1 | 201 | 45 | 240 | 9.55e-87 | 257 |
MS.gene76107.t1 | AT5G05380 | 67.164 | 201 | 61 | 1 | 1 | 201 | 53 | 248 | 9.96e-87 | 257 |
MS.gene76107.t1 | AT5G05380 | 67.164 | 201 | 61 | 1 | 1 | 201 | 2 | 197 | 1.02e-86 | 255 |
MS.gene76107.t1 | AT3G56110 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.79e-86 | 254 |
MS.gene76107.t1 | AT3G56110 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.79e-86 | 254 |
MS.gene76107.t1 | AT3G56110 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.79e-86 | 254 |
MS.gene76107.t1 | AT3G56110 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.79e-86 | 254 |
MS.gene76107.t1 | AT5G05380 | 67.164 | 201 | 61 | 1 | 1 | 201 | 69 | 264 | 2.27e-86 | 257 |
MS.gene76107.t1 | AT5G01640 | 52.427 | 206 | 89 | 2 | 2 | 202 | 4 | 205 | 1.05e-77 | 233 |
MS.gene76107.t1 | AT2G40380 | 63.366 | 202 | 68 | 1 | 2 | 203 | 3 | 198 | 1.62e-74 | 224 |
MS.gene76107.t1 | AT5G07110 | 55.738 | 183 | 77 | 1 | 19 | 197 | 8 | 190 | 2.22e-59 | 186 |
MS.gene76107.t1 | AT1G55190 | 37.705 | 183 | 105 | 4 | 22 | 200 | 9 | 186 | 1.60e-32 | 116 |
MS.gene76107.t1 | AT4G00005 | 57.000 | 100 | 43 | 0 | 74 | 173 | 2 | 101 | 5.74e-32 | 112 |
MS.gene76107.t1 | AT3G13710 | 34.659 | 176 | 109 | 2 | 19 | 194 | 8 | 177 | 1.00e-28 | 106 |
MS.gene76107.t1 | AT1G08770 | 33.333 | 162 | 108 | 0 | 38 | 199 | 34 | 195 | 2.80e-26 | 100 |
MS.gene76107.t1 | AT1G17700 | 36.994 | 173 | 107 | 1 | 21 | 193 | 6 | 176 | 1.50e-24 | 95.9 |
MS.gene76107.t1 | AT3G13720 | 35.443 | 158 | 100 | 1 | 37 | 194 | 22 | 177 | 9.67e-24 | 94.0 |
MS.gene76107.t1 | AT5G56230 | 32.418 | 182 | 116 | 3 | 22 | 198 | 2 | 181 | 1.87e-22 | 90.5 |
MS.gene76107.t1 | AT1G04260 | 31.548 | 168 | 113 | 1 | 37 | 204 | 6 | 171 | 4.96e-22 | 89.4 |
MS.gene76107.t1 | AT1G55640 | 31.210 | 157 | 105 | 2 | 37 | 192 | 23 | 177 | 1.60e-18 | 80.1 |
MS.gene76107.t1 | AT4G29658 | 30.625 | 160 | 106 | 2 | 35 | 191 | 18 | 175 | 2.72e-16 | 74.3 |
Find 82 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGGTGCTGGTGTTGGATA+TGG | 0.240654 | 5.2:+71468754 | None:intergenic |
TATGCTTCGGCAAGAGTTTC+GGG | 0.244120 | 5.2:+71468602 | None:intergenic |
ACGGGATTCTTATCGTTTCT+TGG | 0.275846 | 5.2:-71468215 | MS.gene76107:CDS |
TGGCGATCGGTGGTTGAGAT+TGG | 0.282317 | 5.2:+71468732 | None:intergenic |
CTGCGAGAGCGAAGATGATT+AGG | 0.284772 | 5.2:+71468531 | None:intergenic |
ATGTGAAATTCTTGCGGATT+CGG | 0.315878 | 5.2:+71468576 | None:intergenic |
GTATGCTTCGGCAAGAGTTT+CGG | 0.325212 | 5.2:+71468601 | None:intergenic |
TGGTCCTTGTTCGTTCTTCT+CGG | 0.331951 | 5.2:-71468488 | MS.gene76107:CDS |
GTGGATTGGGAAGTGGAAAC+GGG | 0.332376 | 5.2:+71468776 | None:intergenic |
AGGACCATGGATGTGTGATT+AGG | 0.355218 | 5.2:+71468504 | None:intergenic |
TGTGAAATTCTTGCGGATTC+GGG | 0.360685 | 5.2:+71468577 | None:intergenic |
GAGATGAATGCGCGGAAAGC+GGG | 0.362977 | 5.2:+71468707 | None:intergenic |
GGTGTTGGATATGGTGGATT+GGG | 0.368044 | 5.2:+71468763 | None:intergenic |
GGACCATGGATGTGTGATTA+GGG | 0.378240 | 5.2:+71468505 | None:intergenic |
ATCATCAAGAAACAAATCTT+CGG | 0.379952 | 5.2:+71468253 | None:intergenic |
GTTGTTGATCTCTGCGCTTA+TGG | 0.381739 | 5.2:-71468318 | MS.gene76107:CDS |
AGATTTGTTTCTTGATGATC+AGG | 0.389550 | 5.2:-71468249 | MS.gene76107:CDS |
GGCGATCGGTGGTTGAGATT+GGG | 0.393998 | 5.2:+71468733 | None:intergenic |
GGTGGATTGGGAAGTGGAAA+CGG | 0.394090 | 5.2:+71468775 | None:intergenic |
TTCGGACCAGGGACGGCGTT+GGG | 0.405527 | 5.2:+71468652 | None:intergenic |
CCTTCTCCCAACGCCGTCCC+TGG | 0.410509 | 5.2:-71468658 | MS.gene76107:CDS |
TGGTGTTGGATATGGTGGAT+TGG | 0.416693 | 5.2:+71468762 | None:intergenic |
GGTGCTGGTGTTGGATATGG+TGG | 0.417359 | 5.2:+71468757 | None:intergenic |
TGAGGAACGGTCGATGAGTT+CGG | 0.422158 | 5.2:+71468634 | None:intergenic |
AGATTGGGTGGTGCTGGTGT+TGG | 0.426571 | 5.2:+71468748 | None:intergenic |
TTCTCGGTCTTCTTGCTTCG+TGG | 0.433749 | 5.2:-71468472 | MS.gene76107:CDS |
TCATCAAGAAACAAATCTTC+GGG | 0.436107 | 5.2:+71468254 | None:intergenic |
TTGATCTCTGCGCTTATGGT+TGG | 0.438891 | 5.2:-71468314 | MS.gene76107:CDS |
CTCTGCGCTTATGGTTGGAT+TGG | 0.443122 | 5.2:-71468309 | MS.gene76107:CDS |
TGGTTGAGATTGGGTGGTGC+TGG | 0.448544 | 5.2:+71468742 | None:intergenic |
GATCAACCTCTCGTTCTCTT+CGG | 0.458353 | 5.2:-71468422 | MS.gene76107:CDS |
GTTGTGTTTCTTACTGCCGT+TGG | 0.462273 | 5.2:-71468344 | MS.gene76107:CDS |
CCAGGGACGGCGTTGGGAGA+AGG | 0.465648 | 5.2:+71468658 | None:intergenic |
GAAGGCTTGACGGAGGGAGG+AGG | 0.474425 | 5.2:+71468676 | None:intergenic |
TGCGAGAGCGAAGATGATTA+GGG | 0.477760 | 5.2:+71468532 | None:intergenic |
GAGCGAAGATGATTAGGGTT+AGG | 0.478271 | 5.2:+71468537 | None:intergenic |
GACGGAGGGAGGAGGAGATG+CGG | 0.481200 | 5.2:+71468684 | None:intergenic |
ACGGAGGGAGGAGGAGATGC+GGG | 0.483044 | 5.2:+71468685 | None:intergenic |
GCGGATTCGGGAGTATGCTT+CGG | 0.487170 | 5.2:+71468589 | None:intergenic |
GAGTGTCGGTGGAGAGGACA+TGG | 0.489018 | 5.2:+71468799 | None:intergenic |
GGCGTTGGGAGAAGGCTTGA+CGG | 0.493276 | 5.2:+71468666 | None:intergenic |
ACGGTCGATGAGTTCGGACC+AGG | 0.497627 | 5.2:+71468640 | None:intergenic |
AGTTTCGGGACGGGAGATTG+AGG | 0.502283 | 5.2:+71468616 | None:intergenic |
GGATATGGTGGATTGGGAAG+TGG | 0.503254 | 5.2:+71468769 | None:intergenic |
GATCAGGAGGTGAGTAGTAC+GGG | 0.507080 | 5.2:-71468233 | MS.gene76107:CDS |
TTGGCGATTGTGTGTGCGCA+TGG | 0.516927 | 5.2:-71468290 | MS.gene76107:CDS |
GAAGAGAACGAGAGGTTGAT+CGG | 0.520068 | 5.2:+71468424 | None:intergenic |
GGATTCTTATCGTTTCTTGG+TGG | 0.523419 | 5.2:-71468212 | MS.gene76107:CDS |
TGATCAGGAGGTGAGTAGTA+CGG | 0.525246 | 5.2:-71468234 | MS.gene76107:CDS |
TTCGGCAAGAGTTTCGGGAC+GGG | 0.525477 | 5.2:+71468607 | None:intergenic |
AACGGGGAGTGTCGGTGGAG+AGG | 0.530414 | 5.2:+71468793 | None:intergenic |
TTGAATCGCGGCGTTAGCAG+CGG | 0.532993 | 5.2:+71468184 | None:intergenic |
GTGGAAACGGGGAGTGTCGG+TGG | 0.534371 | 5.2:+71468788 | None:intergenic |
TTTGCAGATCGTGAAACGCT+AGG | 0.550246 | 5.2:-71468392 | MS.gene76107:CDS |
TTGCAGATCGTGAAACGCTA+GGG | 0.553499 | 5.2:-71468391 | MS.gene76107:CDS |
GTTGATCGGAAGGACGGAAG+AGG | 0.556915 | 5.2:+71468438 | None:intergenic |
GGAGATGAATGCGCGGAAAG+CGG | 0.557009 | 5.2:+71468706 | None:intergenic |
AGATGAATGCGCGGAAAGCG+GGG | 0.561715 | 5.2:+71468708 | None:intergenic |
TTGGGAGAAGGCTTGACGGA+GGG | 0.564649 | 5.2:+71468670 | None:intergenic |
GTTCGGACCAGGGACGGCGT+TGG | 0.573205 | 5.2:+71468651 | None:intergenic |
GATCGGTGGTTGAGATTGGG+TGG | 0.577090 | 5.2:+71468736 | None:intergenic |
CGATGAGTTCGGACCAGGGA+CGG | 0.577381 | 5.2:+71468645 | None:intergenic |
GAAGTGGAAACGGGGAGTGT+CGG | 0.578014 | 5.2:+71468785 | None:intergenic |
GGAGAAGGCTTGACGGAGGG+AGG | 0.578616 | 5.2:+71468673 | None:intergenic |
AAGACCGAGAAGAACGAACA+AGG | 0.583542 | 5.2:+71468484 | None:intergenic |
AGAACGAGAGGTTGATCGGA+AGG | 0.584166 | 5.2:+71468428 | None:intergenic |
GATGAATGCGCGGAAAGCGG+GGG | 0.585413 | 5.2:+71468709 | None:intergenic |
CGAGAGGTTGATCGGAAGGA+CGG | 0.591390 | 5.2:+71468432 | None:intergenic |
GAAAGTATGTGAAATTCTTG+CGG | 0.592085 | 5.2:+71468570 | None:intergenic |
TTTGTTTCTTGATGATCAGG+AGG | 0.597146 | 5.2:-71468246 | MS.gene76107:CDS |
TGGATTGGGAAGTGGAAACG+GGG | 0.599442 | 5.2:+71468777 | None:intergenic |
CAATTACACGCGTTGAATCG+CGG | 0.603845 | 5.2:+71468172 | None:intergenic |
CTTCGGCAAGAGTTTCGGGA+CGG | 0.630250 | 5.2:+71468606 | None:intergenic |
TTTCCCTAATCACACATCCA+TGG | 0.630889 | 5.2:-71468508 | MS.gene76107:CDS |
AGAAGAACGAACAAGGACCA+TGG | 0.638113 | 5.2:+71468491 | None:intergenic |
GTTGGGAGAAGGCTTGACGG+AGG | 0.642320 | 5.2:+71468669 | None:intergenic |
GTGCGTCCGAAGAGAACGAG+AGG | 0.644143 | 5.2:+71468416 | None:intergenic |
CGGTCGATGAGTTCGGACCA+GGG | 0.648946 | 5.2:+71468641 | None:intergenic |
TGAAACGCTAGGGCTTCTTG+TGG | 0.652168 | 5.2:-71468381 | MS.gene76107:CDS |
AGAGATCAACAACGATCCAA+CGG | 0.666421 | 5.2:+71468328 | None:intergenic |
AGATGCGGGAGATGAATGCG+CGG | 0.678556 | 5.2:+71468699 | None:intergenic |
CGGGACGGGAGATTGAGGAA+CGG | 0.722451 | 5.2:+71468621 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATCATCAAGAAACAAATCTT+CGG | + | chr5.2:71468722-71468741 | None:intergenic | 25.0% |
TCATCAAGAAACAAATCTTC+GGG | + | chr5.2:71468721-71468740 | None:intergenic | 30.0% | |
! | AGATTTGTTTCTTGATGATC+AGG | - | chr5.2:71468723-71468742 | MS.gene76107:CDS | 30.0% |
! | GAAAGTATGTGAAATTCTTG+CGG | + | chr5.2:71468405-71468424 | None:intergenic | 30.0% |
ATGTGAAATTCTTGCGGATT+CGG | + | chr5.2:71468399-71468418 | None:intergenic | 35.0% | |
! | TTTGTTTCTTGATGATCAGG+AGG | - | chr5.2:71468726-71468745 | MS.gene76107:CDS | 35.0% |
ACGGGATTCTTATCGTTTCT+TGG | - | chr5.2:71468757-71468776 | MS.gene76107:CDS | 40.0% | |
AGAGATCAACAACGATCCAA+CGG | + | chr5.2:71468647-71468666 | None:intergenic | 40.0% | |
GGATTCTTATCGTTTCTTGG+TGG | - | chr5.2:71468760-71468779 | MS.gene76107:CDS | 40.0% | |
TGTGAAATTCTTGCGGATTC+GGG | + | chr5.2:71468398-71468417 | None:intergenic | 40.0% | |
TTTCCCTAATCACACATCCA+TGG | - | chr5.2:71468464-71468483 | MS.gene76107:CDS | 40.0% | |
AAGACCGAGAAGAACGAACA+AGG | + | chr5.2:71468491-71468510 | None:intergenic | 45.0% | |
AGAAGAACGAACAAGGACCA+TGG | + | chr5.2:71468484-71468503 | None:intergenic | 45.0% | |
AGGACCATGGATGTGTGATT+AGG | + | chr5.2:71468471-71468490 | None:intergenic | 45.0% | |
GAGCGAAGATGATTAGGGTT+AGG | + | chr5.2:71468438-71468457 | None:intergenic | 45.0% | |
GATCAACCTCTCGTTCTCTT+CGG | - | chr5.2:71468550-71468569 | MS.gene76107:CDS | 45.0% | |
GGACCATGGATGTGTGATTA+GGG | + | chr5.2:71468470-71468489 | None:intergenic | 45.0% | |
GTATGCTTCGGCAAGAGTTT+CGG | + | chr5.2:71468374-71468393 | None:intergenic | 45.0% | |
GTTGTGTTTCTTACTGCCGT+TGG | - | chr5.2:71468628-71468647 | MS.gene76107:CDS | 45.0% | |
GTTGTTGATCTCTGCGCTTA+TGG | - | chr5.2:71468654-71468673 | MS.gene76107:CDS | 45.0% | |
TATGCTTCGGCAAGAGTTTC+GGG | + | chr5.2:71468373-71468392 | None:intergenic | 45.0% | |
TGATCAGGAGGTGAGTAGTA+CGG | - | chr5.2:71468738-71468757 | MS.gene76107:CDS | 45.0% | |
TGCGAGAGCGAAGATGATTA+GGG | + | chr5.2:71468443-71468462 | None:intergenic | 45.0% | |
TGGTCCTTGTTCGTTCTTCT+CGG | - | chr5.2:71468484-71468503 | MS.gene76107:CDS | 45.0% | |
TTGATCTCTGCGCTTATGGT+TGG | - | chr5.2:71468658-71468677 | MS.gene76107:CDS | 45.0% | |
TTGCAGATCGTGAAACGCTA+GGG | - | chr5.2:71468581-71468600 | MS.gene76107:CDS | 45.0% | |
TTTGCAGATCGTGAAACGCT+AGG | - | chr5.2:71468580-71468599 | MS.gene76107:CDS | 45.0% | |
! | GAAGAGAACGAGAGGTTGAT+CGG | + | chr5.2:71468551-71468570 | None:intergenic | 45.0% |
!! | GGTGTTGGATATGGTGGATT+GGG | + | chr5.2:71468212-71468231 | None:intergenic | 45.0% |
!! | TGGTGTTGGATATGGTGGAT+TGG | + | chr5.2:71468213-71468232 | None:intergenic | 45.0% |
CTCTGCGCTTATGGTTGGAT+TGG | - | chr5.2:71468663-71468682 | MS.gene76107:CDS | 50.0% | |
CTGCGAGAGCGAAGATGATT+AGG | + | chr5.2:71468444-71468463 | None:intergenic | 50.0% | |
GATCAGGAGGTGAGTAGTAC+GGG | - | chr5.2:71468739-71468758 | MS.gene76107:CDS | 50.0% | |
TGAAACGCTAGGGCTTCTTG+TGG | - | chr5.2:71468591-71468610 | MS.gene76107:CDS | 50.0% | |
TGAGGAACGGTCGATGAGTT+CGG | + | chr5.2:71468341-71468360 | None:intergenic | 50.0% | |
TTCTCGGTCTTCTTGCTTCG+TGG | - | chr5.2:71468500-71468519 | MS.gene76107:CDS | 50.0% | |
! | AGAACGAGAGGTTGATCGGA+AGG | + | chr5.2:71468547-71468566 | None:intergenic | 50.0% |
! | TGGATTGGGAAGTGGAAACG+GGG | + | chr5.2:71468198-71468217 | None:intergenic | 50.0% |
!! | GGATATGGTGGATTGGGAAG+TGG | + | chr5.2:71468206-71468225 | None:intergenic | 50.0% |
!! | GGTGGATTGGGAAGTGGAAA+CGG | + | chr5.2:71468200-71468219 | None:intergenic | 50.0% |
!! | GTGGATTGGGAAGTGGAAAC+GGG | + | chr5.2:71468199-71468218 | None:intergenic | 50.0% |
AGATGAATGCGCGGAAAGCG+GGG | + | chr5.2:71468267-71468286 | None:intergenic | 55.0% | |
AGATGCGGGAGATGAATGCG+CGG | + | chr5.2:71468276-71468295 | None:intergenic | 55.0% | |
AGTTTCGGGACGGGAGATTG+AGG | + | chr5.2:71468359-71468378 | None:intergenic | 55.0% | |
CTTCGGCAAGAGTTTCGGGA+CGG | + | chr5.2:71468369-71468388 | None:intergenic | 55.0% | |
GAGATGAATGCGCGGAAAGC+GGG | + | chr5.2:71468268-71468287 | None:intergenic | 55.0% | |
GATCGGTGGTTGAGATTGGG+TGG | + | chr5.2:71468239-71468258 | None:intergenic | 55.0% | |
GGAGATGAATGCGCGGAAAG+CGG | + | chr5.2:71468269-71468288 | None:intergenic | 55.0% | |
GGCGATCGGTGGTTGAGATT+GGG | + | chr5.2:71468242-71468261 | None:intergenic | 55.0% | |
GTTGATCGGAAGGACGGAAG+AGG | + | chr5.2:71468537-71468556 | None:intergenic | 55.0% | |
TGGCGATCGGTGGTTGAGAT+TGG | + | chr5.2:71468243-71468262 | None:intergenic | 55.0% | |
TGGTTGAGATTGGGTGGTGC+TGG | + | chr5.2:71468233-71468252 | None:intergenic | 55.0% | |
TTCGGCAAGAGTTTCGGGAC+GGG | + | chr5.2:71468368-71468387 | None:intergenic | 55.0% | |
TTGAATCGCGGCGTTAGCAG+CGG | + | chr5.2:71468791-71468810 | None:intergenic | 55.0% | |
TTGGCGATTGTGTGTGCGCA+TGG | - | chr5.2:71468682-71468701 | MS.gene76107:CDS | 55.0% | |
TTGGGAGAAGGCTTGACGGA+GGG | + | chr5.2:71468305-71468324 | None:intergenic | 55.0% | |
! | CGAGAGGTTGATCGGAAGGA+CGG | + | chr5.2:71468543-71468562 | None:intergenic | 55.0% |
! | GAAGTGGAAACGGGGAGTGT+CGG | + | chr5.2:71468190-71468209 | None:intergenic | 55.0% |
! | GCGGATTCGGGAGTATGCTT+CGG | + | chr5.2:71468386-71468405 | None:intergenic | 55.0% |
!! | AGATTGGGTGGTGCTGGTGT+TGG | + | chr5.2:71468227-71468246 | None:intergenic | 55.0% |
!! | GGTGCTGGTGTTGGATATGG+TGG | + | chr5.2:71468218-71468237 | None:intergenic | 55.0% |
!! | GGTGGTGCTGGTGTTGGATA+TGG | + | chr5.2:71468221-71468240 | None:intergenic | 55.0% |
ACGGTCGATGAGTTCGGACC+AGG | + | chr5.2:71468335-71468354 | None:intergenic | 60.0% | |
CGATGAGTTCGGACCAGGGA+CGG | + | chr5.2:71468330-71468349 | None:intergenic | 60.0% | |
CGGGACGGGAGATTGAGGAA+CGG | + | chr5.2:71468354-71468373 | None:intergenic | 60.0% | |
CGGTCGATGAGTTCGGACCA+GGG | + | chr5.2:71468334-71468353 | None:intergenic | 60.0% | |
GATGAATGCGCGGAAAGCGG+GGG | + | chr5.2:71468266-71468285 | None:intergenic | 60.0% | |
GTGCGTCCGAAGAGAACGAG+AGG | + | chr5.2:71468559-71468578 | None:intergenic | 60.0% | |
GTTGGGAGAAGGCTTGACGG+AGG | + | chr5.2:71468306-71468325 | None:intergenic | 60.0% | |
! | GGCGTTGGGAGAAGGCTTGA+CGG | + | chr5.2:71468309-71468328 | None:intergenic | 60.0% |
ACGGAGGGAGGAGGAGATGC+GGG | + | chr5.2:71468290-71468309 | None:intergenic | 65.0% | |
GAAGGCTTGACGGAGGGAGG+AGG | + | chr5.2:71468299-71468318 | None:intergenic | 65.0% | |
GACGGAGGGAGGAGGAGATG+CGG | + | chr5.2:71468291-71468310 | None:intergenic | 65.0% | |
GGAGAAGGCTTGACGGAGGG+AGG | + | chr5.2:71468302-71468321 | None:intergenic | 65.0% | |
TTCGGACCAGGGACGGCGTT+GGG | + | chr5.2:71468323-71468342 | None:intergenic | 65.0% | |
!! | AACGGGGAGTGTCGGTGGAG+AGG | + | chr5.2:71468182-71468201 | None:intergenic | 65.0% |
!! | GTGGAAACGGGGAGTGTCGG+TGG | + | chr5.2:71468187-71468206 | None:intergenic | 65.0% |
AAAGCGGGGGTGGCGATCGG+TGG | + | chr5.2:71468253-71468272 | None:intergenic | 70.0% | |
CCTTCTCCCAACGCCGTCCC+TGG | - | chr5.2:71468314-71468333 | MS.gene76107:CDS | 70.0% | |
CGGAAAGCGGGGGTGGCGAT+CGG | + | chr5.2:71468256-71468275 | None:intergenic | 70.0% | |
GAATGCGCGGAAAGCGGGGG+TGG | + | chr5.2:71468263-71468282 | None:intergenic | 70.0% | |
GTTCGGACCAGGGACGGCGT+TGG | + | chr5.2:71468324-71468343 | None:intergenic | 70.0% | |
! | CCAGGGACGGCGTTGGGAGA+AGG | + | chr5.2:71468317-71468336 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 71468175 | 71468819 | 71468175 | ID=MS.gene76107 |
chr5.2 | mRNA | 71468175 | 71468819 | 71468175 | ID=MS.gene76107.t1;Parent=MS.gene76107 |
chr5.2 | exon | 71468175 | 71468819 | 71468175 | ID=MS.gene76107.t1.exon1;Parent=MS.gene76107.t1 |
chr5.2 | CDS | 71468175 | 71468819 | 71468175 | ID=cds.MS.gene76107.t1;Parent=MS.gene76107.t1 |
Gene Sequence |
Protein sequence |