Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50599.t1 | XP_013468554.1 | 99.4 | 157 | 1 | 0 | 36 | 192 | 1 | 157 | 3.90E-82 | 314.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50599.t1 | Q9CWD8 | 62.4 | 149 | 55 | 1 | 45 | 192 | 55 | 203 | 6.0e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50599.t1 | A0A072VLT3 | 99.4 | 157 | 1 | 0 | 36 | 192 | 1 | 157 | 2.8e-82 | 314.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene50599 | 0.810018 | 1.42E-50 | -1.69E-46 |
| MS.gene04995 | MS.gene50599 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene50599 | -0.807581 | 4.71E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50599.t1 | MTR_1g070360 | 99.363 | 157 | 1 | 0 | 36 | 192 | 1 | 157 | 2.53e-111 | 319 |
| MS.gene50599.t1 | MTR_6g086600 | 43.662 | 142 | 69 | 4 | 56 | 192 | 176 | 311 | 7.21e-30 | 115 |
| MS.gene50599.t1 | MTR_6g086600 | 43.662 | 142 | 69 | 4 | 56 | 192 | 167 | 302 | 7.77e-30 | 114 |
| MS.gene50599.t1 | MTR_1g016110 | 41.844 | 141 | 75 | 5 | 52 | 188 | 7 | 144 | 1.11e-26 | 103 |
| MS.gene50599.t1 | MTR_1g019620 | 41.844 | 141 | 75 | 5 | 52 | 188 | 54 | 191 | 3.76e-26 | 102 |
| MS.gene50599.t1 | MTR_1g016110 | 41.844 | 141 | 75 | 5 | 52 | 188 | 54 | 191 | 3.96e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50599.t1 | AT4G19540 | 75.524 | 143 | 35 | 0 | 50 | 192 | 36 | 178 | 9.40e-78 | 235 |
| MS.gene50599.t1 | AT3G24430 | 46.043 | 139 | 70 | 4 | 56 | 192 | 175 | 310 | 3.69e-31 | 118 |
| MS.gene50599.t1 | AT5G50960 | 41.096 | 146 | 77 | 6 | 52 | 192 | 54 | 195 | 8.88e-25 | 99.4 |
Find 56 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTGAGACATAGATATT+TGG | 0.283473 | 1.2:-53872228 | None:intergenic |
| AAATGACGAGGGGAGTTAAC+TGG | 0.330730 | 1.2:+53872155 | MS.gene50599:CDS |
| GATACCATAGCTATTGCTTC+TGG | 0.358686 | 1.2:+53869729 | MS.gene50599:CDS |
| GCGAAGCATCTTCGCATTGA+TGG | 0.362197 | 1.2:+53869699 | MS.gene50599:CDS |
| GGGATCAAGTGTATGTCAAT+AGG | 0.367929 | 1.2:+53871854 | MS.gene50599:CDS |
| TCTCAGAATCTGCAACTATC+AGG | 0.373762 | 1.2:+53872241 | MS.gene50599:CDS |
| TGGGGCCTCTCCAGACGATC+GGG | 0.385203 | 1.2:-53871898 | None:intergenic |
| TGATTCCCATTGATAGTTAC+GGG | 0.385809 | 1.2:+53871834 | MS.gene50599:CDS |
| AGAAGAATGCCCCGATCGTC+TGG | 0.396775 | 1.2:+53871888 | MS.gene50599:CDS |
| GTGTCGATGTTCATCATGAT+AGG | 0.396838 | 1.2:-53870850 | None:intergenic |
| GATATACCTTGAGTGACTTC+AGG | 0.399695 | 1.2:-53870877 | None:intergenic |
| GTAAGTTCCAATTGAAGGTT+GGG | 0.411148 | 1.2:+53870794 | MS.gene50599:CDS |
| GTGGATTTGAGATTCTGATT+AGG | 0.418162 | 1.2:-53869482 | None:intergenic |
| TGCAAGTAAGTTCCAATTGA+AGG | 0.420623 | 1.2:+53870789 | MS.gene50599:CDS |
| CAAGTAACCCAACCTTCAAT+TGG | 0.422756 | 1.2:-53870801 | None:intergenic |
| ATGATTCCCATTGATAGTTA+CGG | 0.432104 | 1.2:+53871833 | MS.gene50599:CDS |
| GTTCATCATGATAGGAATGT+TGG | 0.432777 | 1.2:-53870842 | None:intergenic |
| TTCTGATTAGGTTGAATTTG+AGG | 0.433430 | 1.2:-53869470 | None:intergenic |
| CTTGATCCCGTAACTATCAA+TGG | 0.438569 | 1.2:-53871840 | None:intergenic |
| GATCTTCTGTATGTGATGTC+GGG | 0.446456 | 1.2:-53869513 | None:intergenic |
| GGATCAAGTGTATGTCAATA+GGG | 0.458082 | 1.2:+53871855 | MS.gene50599:CDS |
| TTACTTGATGCTGATGTGTA+TGG | 0.464843 | 1.2:+53870817 | MS.gene50599:CDS |
| ATAGCTATTGCTTCTGGTAA+AGG | 0.466248 | 1.2:+53869735 | MS.gene50599:CDS |
| ATGTTAAATAAACTATGAAC+TGG | 0.477238 | 1.2:+53865690 | None:intergenic |
| TTCATCATGATAGGAATGTT+GGG | 0.479590 | 1.2:-53870841 | None:intergenic |
| AATGACGAGGGGAGTTAACT+GGG | 0.488841 | 1.2:+53872156 | MS.gene50599:CDS |
| GGATCTTCTGTATGTGATGT+CGG | 0.492796 | 1.2:-53869514 | None:intergenic |
| ATAGATATGCCTCCTGGCAC+TGG | 0.493130 | 1.2:+53872199 | MS.gene50599:CDS |
| AGTAAGTTCCAATTGAAGGT+TGG | 0.499750 | 1.2:+53870793 | MS.gene50599:CDS |
| ATGGGGCCTCTCCAGACGAT+CGG | 0.500251 | 1.2:-53871899 | None:intergenic |
| CATCAAAGTTGATGAGGCCG+AGG | 0.513994 | 1.2:+53869553 | MS.gene50599:CDS |
| TTGATCCCGTAACTATCAAT+GGG | 0.516228 | 1.2:-53871839 | None:intergenic |
| CTGGTGATAGATATGCCTCC+TGG | 0.527506 | 1.2:+53872193 | MS.gene50599:CDS |
| ATCTTCTGTATGTGATGTCG+GGG | 0.543008 | 1.2:-53869512 | None:intergenic |
| GTCGGCAAATCAACAACTGC+TGG | 0.546887 | 1.2:+53869762 | MS.gene50599:CDS |
| GATCGTCTGGAGAGGCCCCA+TGG | 0.554959 | 1.2:+53871901 | MS.gene50599:CDS |
| ATTTGGACATCACCAGTGCC+AGG | 0.555591 | 1.2:-53872211 | None:intergenic |
| TTTCATTCTGATCAGTGGCT+AGG | 0.565317 | 1.2:+53869660 | MS.gene50599:intron |
| GCTTCTGGTAAAGGCGGTGT+CGG | 0.565622 | 1.2:+53869744 | MS.gene50599:CDS |
| TTTACCAGAAGCAATAGCTA+TGG | 0.617990 | 1.2:-53869733 | None:intergenic |
| GGGGCCTCTCCAGACGATCG+GGG | 0.629673 | 1.2:-53871897 | None:intergenic |
| CATTCACATCAAAGTTGATG+AGG | 0.635095 | 1.2:+53869547 | MS.gene50599:CDS |
| AATGCCCCGATCGTCTGGAG+AGG | 0.641120 | 1.2:+53871893 | MS.gene50599:CDS |
| AGCTCTTGAGAAAATGACGA+GGG | 0.641120 | 1.2:+53872144 | MS.gene50599:CDS |
| TATCTATCACCAGAATGTCA+AGG | 0.659018 | 1.2:-53872183 | None:intergenic |
| ATCAAAGTTGATGAGGCCGA+GGG | 0.661654 | 1.2:+53869554 | MS.gene50599:CDS |
| GCTATTGCTTCTGGTAAAGG+CGG | 0.674617 | 1.2:+53869738 | MS.gene50599:CDS |
| ACAAAGCCTGAAGTCACTCA+AGG | 0.675264 | 1.2:+53870871 | MS.gene50599:CDS |
| ATGACGAGGGGAGTTAACTG+GGG | 0.676508 | 1.2:+53872157 | MS.gene50599:CDS |
| TCGGGGCATTCTTCTCCACA+AGG | 0.698186 | 1.2:-53871880 | None:intergenic |
| AAGCTCTTGAGAAAATGACG+AGG | 0.702011 | 1.2:+53872143 | MS.gene50599:CDS |
| GCTCTTGAGAAAATGACGAG+GGG | 0.708702 | 1.2:+53872145 | MS.gene50599:CDS |
| TCTTCTGTATGTGATGTCGG+GGG | 0.721310 | 1.2:-53869511 | None:intergenic |
| TATGTCAATAGGGTTCCTTG+TGG | 0.727496 | 1.2:+53871865 | MS.gene50599:CDS |
| TGACGAGGGGAGTTAACTGG+GGG | 0.736165 | 1.2:+53872158 | MS.gene50599:CDS |
| TGGACATCACCAGTGCCAGG+AGG | 0.736378 | 1.2:-53872208 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTAAAAAAAATACAA+AGG | - | chr1.2:53867908-53867927 | None:intergenic | 10.0% |
| !!! | AAAAATCATGTAAATTTTTT+TGG | - | chr1.2:53869324-53869343 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTCATTATTAGA+AGG | + | chr1.2:53866289-53866308 | MS.gene50599:intron | 10.0% |
| !!! | ATATTTAACTCTTTTTTTTT+TGG | - | chr1.2:53867773-53867792 | None:intergenic | 10.0% |
| !!! | TTCTATATGTATTTTTATAA+AGG | + | chr1.2:53866046-53866065 | MS.gene50599:intron | 10.0% |
| !! | ATCTTATTCAAAAATATGAA+TGG | + | chr1.2:53868109-53868128 | MS.gene50599:intron | 15.0% |
| !! | TATTTAGATTGAAAGAAAAA+GGG | - | chr1.2:53868838-53868857 | None:intergenic | 15.0% |
| !! | TCTTATTCAAAAATATGAAT+GGG | + | chr1.2:53868110-53868129 | MS.gene50599:intron | 15.0% |
| !! | TGAAAAATCAAAATAAATTG+AGG | + | chr1.2:53865991-53866010 | MS.gene50599:intron | 15.0% |
| !! | TTATTTAGATTGAAAGAAAA+AGG | - | chr1.2:53868839-53868858 | None:intergenic | 15.0% |
| !!! | AAAAAATTTGAAACACAATT+TGG | - | chr1.2:53867417-53867436 | None:intergenic | 15.0% |
| !!! | AAAAATTTGAAACACAATTT+GGG | - | chr1.2:53867416-53867435 | None:intergenic | 15.0% |
| !!! | AATGATTTAGTAGTATTTTA+AGG | - | chr1.2:53866261-53866280 | None:intergenic | 15.0% |
| !!! | AATTATTAAGCTTTGTTTTA+TGG | + | chr1.2:53871739-53871758 | MS.gene50599:intron | 15.0% |
| !!! | CAAAGTTGATATATTTATAT+AGG | + | chr1.2:53868622-53868641 | MS.gene50599:intron | 15.0% |
| !!! | CAATTTTAAAACAAAGATAA+TGG | - | chr1.2:53871702-53871721 | None:intergenic | 15.0% |
| !!! | TTTATTTGAATTTTTATTGC+TGG | + | chr1.2:53872103-53872122 | MS.gene50599:intron | 15.0% |
| !!! | TTTTCTTTTGTGTTTTTTTT+GGG | + | chr1.2:53868882-53868901 | MS.gene50599:intron | 15.0% |
| !!! | TTTTTCTTTTGTGTTTTTTT+TGG | + | chr1.2:53868881-53868900 | MS.gene50599:intron | 15.0% |
| !!! | TTTTTTCAATTAAGATTGTA+GGG | + | chr1.2:53870223-53870242 | MS.gene50599:intron | 15.0% |
| !!! | TTTTTTTCAATTAAGATTGT+AGG | + | chr1.2:53870222-53870241 | MS.gene50599:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGGTGAA+AGG | + | chr1.2:53865752-53865771 | MS.gene50599:intron | 15.0% |
| !! | AAAAGAGTTAAATATGTTTC+TGG | + | chr1.2:53867778-53867797 | MS.gene50599:intron | 20.0% |
| !! | AAACACAAATAAATAGTGTT+TGG | + | chr1.2:53866213-53866232 | MS.gene50599:intron | 20.0% |
| !! | AAACACAAATGAATAATGTT+TGG | - | chr1.2:53866337-53866356 | None:intergenic | 20.0% |
| !! | AACACAAATGAATAATGTTT+GGG | - | chr1.2:53866336-53866355 | None:intergenic | 20.0% |
| !! | AATAGTTAATGAAAGTGAAA+AGG | - | chr1.2:53871968-53871987 | None:intergenic | 20.0% |
| !! | AATATTTCTCTATAATGTAC+TGG | + | chr1.2:53870904-53870923 | MS.gene50599:intron | 20.0% |
| !! | ACAATAAGTAAGTATATTGA+AGG | - | chr1.2:53868285-53868304 | None:intergenic | 20.0% |
| !! | ACAATAAGTAAGTATTTACA+AGG | - | chr1.2:53868317-53868336 | None:intergenic | 20.0% |
| !! | ATAACTACAATTTATGAACT+TGG | + | chr1.2:53871638-53871657 | MS.gene50599:intron | 20.0% |
| !! | CTTATTCAAAAATATGAATG+GGG | + | chr1.2:53868111-53868130 | MS.gene50599:intron | 20.0% |
| !! | GGTATATGATATAATGTATT+AGG | + | chr1.2:53866756-53866775 | MS.gene50599:intron | 20.0% |
| !! | TAAGAACTAATGTAATTGAA+AGG | + | chr1.2:53867630-53867649 | MS.gene50599:intron | 20.0% |
| !! | TAATCAGCAAATATTACATA+TGG | - | chr1.2:53871462-53871481 | None:intergenic | 20.0% |
| !! | TTGAAATTCTGATACATTAA+AGG | - | chr1.2:53868184-53868203 | None:intergenic | 20.0% |
| !! | TTGTAAATAACTTGGTAAAA+TGG | - | chr1.2:53865834-53865853 | None:intergenic | 20.0% |
| !! | TTTATTTCCTATTGAAAGAT+CGG | + | chr1.2:53868971-53868990 | MS.gene50599:intron | 20.0% |
| !! | TTTCTTTCAATCTAAATAAG+TGG | + | chr1.2:53868840-53868859 | MS.gene50599:intron | 20.0% |
| !!! | AATAAAATCAGAACTTTTTG+AGG | - | chr1.2:53866942-53866961 | None:intergenic | 20.0% |
| !!! | AGTCATTTTAGAATTACTTA+TGG | - | chr1.2:53867266-53867285 | None:intergenic | 20.0% |
| !!! | AGTGAAGATGAAAAATTTTT+GGG | + | chr1.2:53868561-53868580 | MS.gene50599:intron | 20.0% |
| !!! | ATGAAACATTTTAATATCAG+AGG | - | chr1.2:53868244-53868263 | None:intergenic | 20.0% |
| !!! | ATGTATTTTTATAAAGGTGT+CGG | + | chr1.2:53866052-53866071 | MS.gene50599:intron | 20.0% |
| !!! | ATTGTTTCTAATTTGAAGTT+AGG | + | chr1.2:53869961-53869980 | MS.gene50599:intron | 20.0% |
| !!! | ATTTATAAGGAGATTTTTAG+AGG | - | chr1.2:53867837-53867856 | None:intergenic | 20.0% |
| !!! | CAAATTAGAAACAATTTTAG+AGG | - | chr1.2:53869956-53869975 | None:intergenic | 20.0% |
| !!! | GGTTTTATCATATTATTTGT+AGG | + | chr1.2:53869073-53869092 | MS.gene50599:intron | 20.0% |
| !!! | TATTTGCTGATTATCATAAA+TGG | + | chr1.2:53871469-53871488 | MS.gene50599:intron | 20.0% |
| !!! | TTAACTCTTTTTTTTTTGGT+TGG | - | chr1.2:53867769-53867788 | None:intergenic | 20.0% |
| !!! | TTGATATTTTGATACATTGA+TGG | + | chr1.2:53868437-53868456 | MS.gene50599:intron | 20.0% |
| !!! | TTTTTCAATTAAGATTGTAG+GGG | + | chr1.2:53870224-53870243 | MS.gene50599:intron | 20.0% |
| ! | AAATGTTGAGGACTTTATTA+AGG | + | chr1.2:53867211-53867230 | MS.gene50599:intron | 25.0% |
| ! | AACCACAAAAATCTCATAAA+TGG | + | chr1.2:53867479-53867498 | MS.gene50599:intron | 25.0% |
| ! | AACTAATGTAATTGAAAGGT+TGG | + | chr1.2:53867634-53867653 | MS.gene50599:intron | 25.0% |
| ! | AATTCGTGATTAGATTTGAT+GGG | - | chr1.2:53866919-53866938 | None:intergenic | 25.0% |
| ! | ACAAATTCAACCAATGATTT+GGG | + | chr1.2:53869006-53869025 | MS.gene50599:intron | 25.0% |
| ! | ACTAATGTAATTGAAAGGTT+GGG | + | chr1.2:53867635-53867654 | MS.gene50599:intron | 25.0% |
| ! | AGAAGAGATTGTAAATAACT+TGG | - | chr1.2:53865842-53865861 | None:intergenic | 25.0% |
| ! | AGCATTAAGATAATTACAAG+AGG | + | chr1.2:53866508-53866527 | MS.gene50599:intron | 25.0% |
| ! | AGTGAAAGAATTTAACATCT+AGG | + | chr1.2:53866414-53866433 | MS.gene50599:intron | 25.0% |
| ! | ATACTAGACATTAGAGAATT+GGG | + | chr1.2:53865912-53865931 | MS.gene50599:intron | 25.0% |
| ! | ATCTGAAAACATGTGAATTT+CGG | + | chr1.2:53869043-53869062 | MS.gene50599:intron | 25.0% |
| ! | CAAATAAAAAACAGTAGAAG+TGG | - | chr1.2:53872091-53872110 | None:intergenic | 25.0% |
| ! | CAATTCAAAATTCGATTTCT+AGG | + | chr1.2:53866083-53866102 | MS.gene50599:intron | 25.0% |
| ! | CATACGTAGAATTCATATTT+GGG | - | chr1.2:53868516-53868535 | None:intergenic | 25.0% |
| ! | GGGTTGAACAATAAATTTAA+GGG | - | chr1.2:53870423-53870442 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGATAAAATTAG+CGG | + | chr1.2:53870143-53870162 | MS.gene50599:intron | 25.0% |
| ! | TACAAATTCAACCAATGATT+TGG | + | chr1.2:53869005-53869024 | MS.gene50599:intron | 25.0% |
| ! | TACTACATTAGATCATATAC+AGG | + | chr1.2:53867015-53867034 | MS.gene50599:intron | 25.0% |
| ! | TATAAAAGAATTCCTCTGTT+GGG | + | chr1.2:53866362-53866381 | MS.gene50599:intron | 25.0% |
| ! | TTAAAAATAGGGATCAAAAG+TGG | - | chr1.2:53867869-53867888 | None:intergenic | 25.0% |
| ! | TTATTTCCATAAGTTCTTCA+GGG | - | chr1.2:53870588-53870607 | None:intergenic | 25.0% |
| ! | TTCTCAGAAAAAGTTAAAGT+GGG | - | chr1.2:53871181-53871200 | None:intergenic | 25.0% |
| ! | TTGAAATATGATGTGACAAT+CGG | - | chr1.2:53867529-53867548 | None:intergenic | 25.0% |
| !! | AAGCAATTGATTCAACATAT+AGG | - | chr1.2:53869435-53869454 | None:intergenic | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+AGG | - | chr1.2:53867881-53867900 | None:intergenic | 25.0% |
| !! | AGCAATTGATTCAACATATA+GGG | - | chr1.2:53869434-53869453 | None:intergenic | 25.0% |
| !! | AGTGATAATGTTAAAGCAAT+AGG | + | chr1.2:53871320-53871339 | MS.gene50599:intron | 25.0% |
| !! | ATCCATTTATGAGATTTTTG+TGG | - | chr1.2:53867484-53867503 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATAAGTTCTCT+CGG | + | chr1.2:53870625-53870644 | MS.gene50599:intron | 25.0% |
| !! | CATGAGTTGACTTAAAAATA+GGG | - | chr1.2:53867880-53867899 | None:intergenic | 25.0% |
| !! | CTAGAAATCGAATTTTGAAT+TGG | - | chr1.2:53866085-53866104 | None:intergenic | 25.0% |
| !! | GAGTGAAGATGAAAAATTTT+TGG | + | chr1.2:53868560-53868579 | MS.gene50599:intron | 25.0% |
| !! | GTGAAGATGAAAAATTTTTG+GGG | + | chr1.2:53868562-53868581 | MS.gene50599:intron | 25.0% |
| !! | TAATGGTTTCTTTTATGTGA+AGG | + | chr1.2:53867093-53867112 | MS.gene50599:intron | 25.0% |
| !! | TATGAGATTTTTGTGGTTTA+GGG | - | chr1.2:53867477-53867496 | None:intergenic | 25.0% |
| !! | TCTCAACACATGATATTTTT+AGG | + | chr1.2:53871595-53871614 | MS.gene50599:intron | 25.0% |
| !! | TGGGTTGAACAATAAATTTA+AGG | - | chr1.2:53870424-53870443 | None:intergenic | 25.0% |
| !! | TTATGAGATTTTTGTGGTTT+AGG | - | chr1.2:53867478-53867497 | None:intergenic | 25.0% |
| !! | TTTAGGGTGAAACTATAATT+TGG | - | chr1.2:53867461-53867480 | None:intergenic | 25.0% |
| !! | TTTTAAATCATCCACTTCAT+TGG | + | chr1.2:53871512-53871531 | MS.gene50599:intron | 25.0% |
| !! | TTTTATTGCTGGATTATCAT+AGG | + | chr1.2:53872114-53872133 | MS.gene50599:intron | 25.0% |
| !!! | AAAACTCTAAAATTTCTTGG+TGG | - | chr1.2:53866650-53866669 | None:intergenic | 25.0% |
| !!! | AATTTTAGAGTTTTTCGACA+AGG | + | chr1.2:53866656-53866675 | MS.gene50599:intron | 25.0% |
| !!! | CGAAAAACTCTAAAATTTCT+TGG | - | chr1.2:53866653-53866672 | None:intergenic | 25.0% |
| !!! | CTGTTTTATGATATTAGCTT+GGG | + | chr1.2:53869103-53869122 | MS.gene50599:intron | 25.0% |
| !!! | GATTTTTAGAGGAACTAAAA+CGG | - | chr1.2:53867826-53867845 | None:intergenic | 25.0% |
| !!! | TATTTTTTGCACACATGTTT+AGG | - | chr1.2:53866395-53866414 | None:intergenic | 25.0% |
| !!! | TCATTTAATTTGTCCTTTGT+TGG | + | chr1.2:53866154-53866173 | MS.gene50599:intron | 25.0% |
| !!! | TGTATTTTTATAAAGGTGTC+GGG | + | chr1.2:53866053-53866072 | MS.gene50599:intron | 25.0% |
| AAAATTGCTTGAATGTAGAG+TGG | - | chr1.2:53871300-53871319 | None:intergenic | 30.0% | |
| AAACATCGCTAAAAACGTAA+AGG | - | chr1.2:53869155-53869174 | None:intergenic | 30.0% | |
| AAACCAAACCTATCAAACAT+AGG | - | chr1.2:53869906-53869925 | None:intergenic | 30.0% | |
| AAAGATAGCATATTGACCAT+AGG | - | chr1.2:53867317-53867336 | None:intergenic | 30.0% | |
| AAAGTGAGAAGAATGTAAAG+TGG | - | chr1.2:53870475-53870494 | None:intergenic | 30.0% | |
| AAATATGTGTCTTACCAAAC+AGG | + | chr1.2:53870397-53870416 | MS.gene50599:intron | 30.0% | |
| AACATCGCTAAAAACGTAAA+GGG | - | chr1.2:53869154-53869173 | None:intergenic | 30.0% | |
| AAGAAAGTTTAGAGAGAAGT+TGG | - | chr1.2:53868743-53868762 | None:intergenic | 30.0% | |
| AAGACACATATTTGAGCTTA+TGG | - | chr1.2:53870390-53870409 | None:intergenic | 30.0% | |
| AATAAATTTAAGGGCCTGTT+TGG | - | chr1.2:53870414-53870433 | None:intergenic | 30.0% | |
| AATCCAAAAAACCAATGAAG+TGG | - | chr1.2:53871526-53871545 | None:intergenic | 30.0% | |
| AATGTAAAGTGGTTTCTGTT+CGG | - | chr1.2:53870464-53870483 | None:intergenic | 30.0% | |
| ATCCAATACATAACTAGAAG+AGG | + | chr1.2:53871553-53871572 | MS.gene50599:intron | 30.0% | |
| ATTAGATTTGATGGGAAAGA+GGG | - | chr1.2:53866911-53866930 | None:intergenic | 30.0% | |
| CTAAACATGCTTGAGTATTT+GGG | - | chr1.2:53866611-53866630 | None:intergenic | 30.0% | |
| CTATAAAAGAATTCCTCTGT+TGG | + | chr1.2:53866361-53866380 | MS.gene50599:intron | 30.0% | |
| CTATGTAGCATCTACAATTT+AGG | - | chr1.2:53871145-53871164 | None:intergenic | 30.0% | |
| CTTATTATGACCAAGCTAAT+GGG | + | chr1.2:53867144-53867163 | MS.gene50599:intron | 30.0% | |
| CTTATTTCCATAAGTTCTTC+AGG | - | chr1.2:53870589-53870608 | None:intergenic | 30.0% | |
| CTTCTCAGAAAAAGTTAAAG+TGG | - | chr1.2:53871182-53871201 | None:intergenic | 30.0% | |
| CTTGATCAAGAAAAATGTTG+AGG | + | chr1.2:53867199-53867218 | MS.gene50599:intron | 30.0% | |
| CTTTGTATGCTAAAGAATAG+CGG | + | chr1.2:53870025-53870044 | MS.gene50599:intron | 30.0% | |
| GAAAATGACAATTACCAAAC+AGG | + | chr1.2:53870330-53870349 | MS.gene50599:intron | 30.0% | |
| GAATTCGTGATTAGATTTGA+TGG | - | chr1.2:53866920-53866939 | None:intergenic | 30.0% | |
| GACTACTCATTAGATATTCA+GGG | + | chr1.2:53868468-53868487 | MS.gene50599:intron | 30.0% | |
| GATACATTAAAGGACTATTG+TGG | - | chr1.2:53868174-53868193 | None:intergenic | 30.0% | |
| GATACTAGACATTAGAGAAT+TGG | + | chr1.2:53865911-53865930 | MS.gene50599:intron | 30.0% | |
| GATATAAGCCTATGTTTGAT+AGG | + | chr1.2:53869895-53869914 | MS.gene50599:intron | 30.0% | |
| GCATACGTAGAATTCATATT+TGG | - | chr1.2:53868517-53868536 | None:intergenic | 30.0% | |
| GGATACATTTACACAAAAGT+GGG | - | chr1.2:53870443-53870462 | None:intergenic | 30.0% | |
| GTGGTGATTGAAGATTTATA+AGG | - | chr1.2:53867850-53867869 | None:intergenic | 30.0% | |
| TAAACATGCTTGAGTATTTG+GGG | - | chr1.2:53866610-53866629 | None:intergenic | 30.0% | |
| TACAATTACATTCAACAGCA+AGG | - | chr1.2:53869408-53869427 | None:intergenic | 30.0% | |
| TATGGTCAATATGCTATCTT+TGG | + | chr1.2:53867316-53867335 | MS.gene50599:intron | 30.0% | |
| TCTAAACATGCTTGAGTATT+TGG | - | chr1.2:53866612-53866631 | None:intergenic | 30.0% | |
| TGACTACTCATTAGATATTC+AGG | + | chr1.2:53868467-53868486 | MS.gene50599:intron | 30.0% | |
| TTACGCGAACAGAAAATTAT+TGG | - | chr1.2:53871799-53871818 | None:intergenic | 30.0% | |
| TTCATCATGATAGGAATGTT+GGG | - | chr1.2:53870844-53870863 | None:intergenic | 30.0% | |
| TTGAGTTACTGTAATGGTTA+AGG | + | chr1.2:53867671-53867690 | MS.gene50599:intron | 30.0% | |
| TTTCTCTCACTAGAAAACTA+GGG | - | chr1.2:53868718-53868737 | None:intergenic | 30.0% | |
| ! | ATGATTCCCATTGATAGTTA+CGG | + | chr1.2:53871833-53871852 | MS.gene50599:CDS | 30.0% |
| ! | ATTTCTACATGTGTGCTTTT+AGG | + | chr1.2:53871224-53871243 | MS.gene50599:intron | 30.0% |
| ! | GATATGATCTTTTCCACAAT+TGG | + | chr1.2:53867501-53867520 | MS.gene50599:intron | 30.0% |
| ! | GCAATTGATTCAACATATAG+GGG | - | chr1.2:53869433-53869452 | None:intergenic | 30.0% |
| ! | GCATCTACAATTTAGGTTAA+AGG | - | chr1.2:53871138-53871157 | None:intergenic | 30.0% |
| ! | TATGTTTGATAGGTTTGGTT+TGG | + | chr1.2:53869905-53869924 | MS.gene50599:intron | 30.0% |
| ! | TCAACTAATAAGAGCTTGTT+TGG | - | chr1.2:53870706-53870725 | None:intergenic | 30.0% |
| ! | TTGATGTGAATGTTTTCTCA+GGG | - | chr1.2:53869539-53869558 | None:intergenic | 30.0% |
| ! | TTTGATGTGAATGTTTTCTC+AGG | - | chr1.2:53869540-53869559 | None:intergenic | 30.0% |
| ! | TTTTCGACAAGGTACAAATT+AGG | + | chr1.2:53866667-53866686 | MS.gene50599:intron | 30.0% |
| !! | AATTCTAAAATGACTGCTAC+CGG | + | chr1.2:53867271-53867290 | MS.gene50599:intron | 30.0% |
| !! | ACTTTTTCCACGTTTATCAT+CGG | - | chr1.2:53866978-53866997 | None:intergenic | 30.0% |
| !! | ATTGGTTTGAGTTACTGTAA+TGG | + | chr1.2:53867665-53867684 | MS.gene50599:intron | 30.0% |
| !! | GATTCTGAGACATAGATATT+TGG | - | chr1.2:53872231-53872250 | None:intergenic | 30.0% |
| !! | GCTGTTTTATGATATTAGCT+TGG | + | chr1.2:53869102-53869121 | MS.gene50599:intron | 30.0% |
| !! | TAAACAACATATCGACTTAG+CGG | + | chr1.2:53866735-53866754 | MS.gene50599:intron | 30.0% |
| !! | TTCTGATTAGGTTGAATTTG+AGG | - | chr1.2:53869473-53869492 | None:intergenic | 30.0% |
| !! | TTTAATTTGTCCTTTGTTGG+AGG | + | chr1.2:53866157-53866176 | MS.gene50599:intron | 30.0% |
| !!! | ACTTCATTGGTTTTTTGGAT+TGG | + | chr1.2:53871525-53871544 | MS.gene50599:intron | 30.0% |
| AAAAGGGAAAAAAGATGTCG+AGG | - | chr1.2:53868822-53868841 | None:intergenic | 35.0% | |
| AAAGGGAAAAAAGATGTCGA+GGG | - | chr1.2:53868821-53868840 | None:intergenic | 35.0% | |
| AAGCCTATGTTTGATAGGTT+TGG | + | chr1.2:53869900-53869919 | MS.gene50599:intron | 35.0% | |
| AATGTTCACAGGGGATATAA+TGG | + | chr1.2:53867076-53867095 | MS.gene50599:intron | 35.0% | |
| AATTTCTGCTTTCCCTTGAT+TGG | + | chr1.2:53871939-53871958 | MS.gene50599:intron | 35.0% | |
| ACCAAGCTAATGGGAAATTT+GGG | + | chr1.2:53867153-53867172 | MS.gene50599:intron | 35.0% | |
| AGACGAGATACTAGAGAATT+GGG | + | chr1.2:53866551-53866570 | MS.gene50599:intron | 35.0% | |
| AGTAAGTTCCAATTGAAGGT+TGG | + | chr1.2:53870793-53870812 | MS.gene50599:CDS | 35.0% | |
| ATAGCTATTGCTTCTGGTAA+AGG | + | chr1.2:53869735-53869754 | MS.gene50599:CDS | 35.0% | |
| ATGACTGAAAAAGACCTGTT+TGG | - | chr1.2:53870347-53870366 | None:intergenic | 35.0% | |
| ATTATTGGCATGAACTGCAA+TGG | - | chr1.2:53871784-53871803 | None:intergenic | 35.0% | |
| CCTTATTATGACCAAGCTAA+TGG | + | chr1.2:53867143-53867162 | MS.gene50599:intron | 35.0% | |
| CGGATACATTTACACAAAAG+TGG | - | chr1.2:53870444-53870463 | None:intergenic | 35.0% | |
| CTACTAAAGTCTCGTAGTTT+CGG | - | chr1.2:53866694-53866713 | None:intergenic | 35.0% | |
| CTTATTAGCATCTCTCAATG+AGG | - | chr1.2:53867354-53867373 | None:intergenic | 35.0% | |
| GATTAGATTTGATGGGAAAG+AGG | - | chr1.2:53866912-53866931 | None:intergenic | 35.0% | |
| GCTATAAGCTGCAAATTGAA+GGG | - | chr1.2:53869796-53869815 | None:intergenic | 35.0% | |
| GGATCAAGTGTATGTCAATA+GGG | + | chr1.2:53871855-53871874 | MS.gene50599:CDS | 35.0% | |
| GTAAGTTCCAATTGAAGGTT+GGG | + | chr1.2:53870794-53870813 | MS.gene50599:CDS | 35.0% | |
| GTTCATCATGATAGGAATGT+TGG | - | chr1.2:53870845-53870864 | None:intergenic | 35.0% | |
| GTTTCTCTCACTAGAAAACT+AGG | - | chr1.2:53868719-53868738 | None:intergenic | 35.0% | |
| TACTGGTACAGACACAATAT+GGG | + | chr1.2:53870921-53870940 | MS.gene50599:intron | 35.0% | |
| TACTGTAATGGTTAAGGAGT+TGG | + | chr1.2:53867677-53867696 | MS.gene50599:intron | 35.0% | |
| TATCGTTTCATTCTGATCAG+TGG | + | chr1.2:53869655-53869674 | MS.gene50599:intron | 35.0% | |
| TATCTATCACCAGAATGTCA+AGG | - | chr1.2:53872186-53872205 | None:intergenic | 35.0% | |
| TCAAATGTGATCACACATGT+CGG | + | chr1.2:53871082-53871101 | MS.gene50599:intron | 35.0% | |
| TGCAAGTAAGTTCCAATTGA+AGG | + | chr1.2:53870789-53870808 | MS.gene50599:CDS | 35.0% | |
| TGCTATAAGCTGCAAATTGA+AGG | - | chr1.2:53869797-53869816 | None:intergenic | 35.0% | |
| TGTGTAGAAAACTTGTGTGA+AGG | + | chr1.2:53869248-53869267 | MS.gene50599:intron | 35.0% | |
| TTACATTCAACAGCAAGGAA+TGG | - | chr1.2:53869403-53869422 | None:intergenic | 35.0% | |
| TTACTTGATGCTGATGTGTA+TGG | + | chr1.2:53870817-53870836 | MS.gene50599:CDS | 35.0% | |
| TTAGATTTGATGGGAAAGAG+GGG | - | chr1.2:53866910-53866929 | None:intergenic | 35.0% | |
| TTAGGATATAAACCCAACAG+AGG | - | chr1.2:53866377-53866396 | None:intergenic | 35.0% | |
| TTGATCCCGTAACTATCAAT+GGG | - | chr1.2:53871842-53871861 | None:intergenic | 35.0% | |
| TTTACCAGAAGCAATAGCTA+TGG | - | chr1.2:53869736-53869755 | None:intergenic | 35.0% | |
| TTTGATGTCCATGATACCAT+TGG | + | chr1.2:53867038-53867057 | MS.gene50599:intron | 35.0% | |
| ! | AAATGGCAATGCTCTGAATA+AGG | + | chr1.2:53871486-53871505 | MS.gene50599:intron | 35.0% |
| ! | CCATTAGCTTGGTCATAATA+AGG | - | chr1.2:53867146-53867165 | None:intergenic | 35.0% |
| ! | CTCCTCTTCTAGTTATGTAT+TGG | - | chr1.2:53871558-53871577 | None:intergenic | 35.0% |
| ! | GTGGATTTGAGATTCTGATT+AGG | - | chr1.2:53869485-53869504 | None:intergenic | 35.0% |
| ! | TGATGTGAATGTTTTCTCAG+GGG | - | chr1.2:53869538-53869557 | None:intergenic | 35.0% |
| ! | TGATTCCCATTGATAGTTAC+GGG | + | chr1.2:53871834-53871853 | MS.gene50599:CDS | 35.0% |
| !! | CATTCACATCAAAGTTGATG+AGG | + | chr1.2:53869547-53869566 | MS.gene50599:CDS | 35.0% |
| !! | CCAAGAACAAAAGTTCTAGA+AGG | - | chr1.2:53872013-53872032 | None:intergenic | 35.0% |
| !! | TGAGAAGCATTCATCTTCAA+TGG | + | chr1.2:53871195-53871214 | MS.gene50599:intron | 35.0% |
| !!! | ATTGAGAGACTATTTTAGCG+TGG | + | chr1.2:53868373-53868392 | MS.gene50599:intron | 35.0% |
| !!! | CATCCACTTCATTGGTTTTT+TGG | + | chr1.2:53871520-53871539 | MS.gene50599:intron | 35.0% |
| !!! | CATTGGTTTTTTGGATTGGA+CGG | + | chr1.2:53871529-53871548 | MS.gene50599:intron | 35.0% |
| !!! | CCTTCTAGAACTTTTGTTCT+TGG | + | chr1.2:53872010-53872029 | MS.gene50599:intron | 35.0% |
| !!! | GTTTTGGGTTCTTGAGTTTT+TGG | + | chr1.2:53866119-53866138 | MS.gene50599:intron | 35.0% |
| !!! | TAACATCTAGGTCACTTTTG+CGG | + | chr1.2:53866426-53866445 | MS.gene50599:intron | 35.0% |
| AACTGCAATGGAAGATGGAA+AGG | - | chr1.2:53871772-53871791 | None:intergenic | 40.0% | |
| AAGCTACCCTGAAGAACTTA+TGG | + | chr1.2:53870579-53870598 | MS.gene50599:intron | 40.0% | |
| AAGCTCTTGAGAAAATGACG+AGG | + | chr1.2:53872143-53872162 | MS.gene50599:CDS | 40.0% | |
| ACCAAGGAACAATGTTCACA+GGG | + | chr1.2:53867066-53867085 | MS.gene50599:intron | 40.0% | |
| ACTAACGAAGTGCACAATCA+AGG | - | chr1.2:53868213-53868232 | None:intergenic | 40.0% | |
| ACTGATGCCGATCTTTCAAT+AGG | - | chr1.2:53868981-53869000 | None:intergenic | 40.0% | |
| AGCTCTTGAGAAAATGACGA+GGG | + | chr1.2:53872144-53872163 | MS.gene50599:CDS | 40.0% | |
| AGCTTGGTCATAATAAGGAG+AGG | - | chr1.2:53867141-53867160 | None:intergenic | 40.0% | |
| AGTGAAAAGGAGACCAATCA+AGG | - | chr1.2:53871955-53871974 | None:intergenic | 40.0% | |
| ATCTTCTGTATGTGATGTCG+GGG | - | chr1.2:53869515-53869534 | None:intergenic | 40.0% | |
| CAAGTAACCCAACCTTCAAT+TGG | - | chr1.2:53870804-53870823 | None:intergenic | 40.0% | |
| CACATGACCAAGACAATGTT+TGG | + | chr1.2:53866810-53866829 | MS.gene50599:intron | 40.0% | |
| CATGTGAATTTCGGTGACTT+AGG | + | chr1.2:53869052-53869071 | MS.gene50599:intron | 40.0% | |
| CCAAGCTAATGGGAAATTTG+GGG | + | chr1.2:53867154-53867173 | MS.gene50599:intron | 40.0% | |
| CTTGATCCCGTAACTATCAA+TGG | - | chr1.2:53871843-53871862 | None:intergenic | 40.0% | |
| GAAAGGTTGGGTAGTTCAAT+TGG | + | chr1.2:53867647-53867666 | MS.gene50599:intron | 40.0% | |
| GACCAAGCTAATGGGAAATT+TGG | + | chr1.2:53867152-53867171 | MS.gene50599:intron | 40.0% | |
| GAGACGAGATACTAGAGAAT+TGG | + | chr1.2:53866550-53866569 | MS.gene50599:intron | 40.0% | |
| GATACCATAGCTATTGCTTC+TGG | + | chr1.2:53869729-53869748 | MS.gene50599:CDS | 40.0% | |
| GATATACCTTGAGTGACTTC+AGG | - | chr1.2:53870880-53870899 | None:intergenic | 40.0% | |
| GATCTTCTGTATGTGATGTC+GGG | - | chr1.2:53869516-53869535 | None:intergenic | 40.0% | |
| GCATTCATCTTCAATGGCAT+TGG | + | chr1.2:53871201-53871220 | MS.gene50599:intron | 40.0% | |
| GGATCTTCTGTATGTGATGT+CGG | - | chr1.2:53869517-53869536 | None:intergenic | 40.0% | |
| GGGATCAAGTGTATGTCAAT+AGG | + | chr1.2:53871854-53871873 | MS.gene50599:CDS | 40.0% | |
| GGTTACTCGTTACACATTCA+GGG | - | chr1.2:53868153-53868172 | None:intergenic | 40.0% | |
| GTCTTTGCCAAACATTGTCT+TGG | - | chr1.2:53866820-53866839 | None:intergenic | 40.0% | |
| GTGAAAAGGAGACCAATCAA+GGG | - | chr1.2:53871954-53871973 | None:intergenic | 40.0% | |
| TACAGCTACATGCATACCAT+GGG | - | chr1.2:53871920-53871939 | None:intergenic | 40.0% | |
| TATCTCGTCTCTTCAAAGCA+AGG | - | chr1.2:53866541-53866560 | None:intergenic | 40.0% | |
| TATGTCAATAGGGTTCCTTG+TGG | + | chr1.2:53871865-53871884 | MS.gene50599:CDS | 40.0% | |
| TATGTTGACAACGACTAGAC+CGG | + | chr1.2:53865788-53865807 | MS.gene50599:intron | 40.0% | |
| TCTCACTAGAAAACTAGGGT+CGG | - | chr1.2:53868714-53868733 | None:intergenic | 40.0% | |
| TCTCAGAATCTGCAACTATC+AGG | + | chr1.2:53872241-53872260 | MS.gene50599:CDS | 40.0% | |
| TCTTTCTCCTTTGTTCATCG+AGG | + | chr1.2:53868759-53868778 | MS.gene50599:intron | 40.0% | |
| TGGTTACTCGTTACACATTC+AGG | - | chr1.2:53868154-53868173 | None:intergenic | 40.0% | |
| TTACAGCTACATGCATACCA+TGG | - | chr1.2:53871921-53871940 | None:intergenic | 40.0% | |
| TTGGGATAATAGTCAGAGTG+TGG | - | chr1.2:53868498-53868517 | None:intergenic | 40.0% | |
| TTTCATTCTGATCAGTGGCT+AGG | + | chr1.2:53869660-53869679 | MS.gene50599:intron | 40.0% | |
| ! | ACTGATAAGCTAGCTTGTAG+CGG | + | chr1.2:53870051-53870070 | MS.gene50599:intron | 40.0% |
| ! | GTACTGGTACAGACACAATA+TGG | + | chr1.2:53870920-53870939 | MS.gene50599:intron | 40.0% |
| ! | GTGTCGATGTTCATCATGAT+AGG | - | chr1.2:53870853-53870872 | None:intergenic | 40.0% |
| ! | TGTCAGTTTCGTAAGAGTGT+CGG | - | chr1.2:53871024-53871043 | None:intergenic | 40.0% |
| !! | CGCTCTTTTCTGGTAAGTAA+AGG | - | chr1.2:53868539-53868558 | None:intergenic | 40.0% |
| !! | TTTGATAGGTTTGGTTTGGC+TGG | + | chr1.2:53869909-53869928 | MS.gene50599:intron | 40.0% |
| !!! | AGGACGATGTTTTGCTGTTT+TGG | + | chr1.2:53866103-53866122 | MS.gene50599:intron | 40.0% |
| !!! | ATCACACATGTCGGTTTTGT+AGG | + | chr1.2:53871091-53871110 | MS.gene50599:intron | 40.0% |
| !!! | GGACGATGTTTTGCTGTTTT+GGG | + | chr1.2:53866104-53866123 | MS.gene50599:intron | 40.0% |
| !!! | TGGCTGGTTTTGAGTTGAAT+TGG | + | chr1.2:53869925-53869944 | MS.gene50599:intron | 40.0% |
| AAATGACGAGGGGAGTTAAC+TGG | + | chr1.2:53872155-53872174 | MS.gene50599:CDS | 45.0% | |
| AAATGTCTCAGTCTCACCCT+CGG | - | chr1.2:53869573-53869592 | None:intergenic | 45.0% | |
| AACGTTGACGCCCAAATCAT+TGG | - | chr1.2:53869019-53869038 | None:intergenic | 45.0% | |
| AATGACGAGGGGAGTTAACT+GGG | + | chr1.2:53872156-53872175 | MS.gene50599:CDS | 45.0% | |
| ACAAAGCCTGAAGTCACTCA+AGG | + | chr1.2:53870871-53870890 | MS.gene50599:CDS | 45.0% | |
| ACAGCTACATGCATACCATG+GGG | - | chr1.2:53871919-53871938 | None:intergenic | 45.0% | |
| ACCATAGGTGAGTGGATAAG+GGG | - | chr1.2:53867302-53867321 | None:intergenic | 45.0% | |
| AGATGTCGAGGGATGATTCT+AGG | - | chr1.2:53868810-53868829 | None:intergenic | 45.0% | |
| AGCTCAACCGATGATAAACG+TGG | + | chr1.2:53866968-53866987 | MS.gene50599:intron | 45.0% | |
| ATGTTGACAACGACTAGACC+GGG | + | chr1.2:53865789-53865808 | MS.gene50599:intron | 45.0% | |
| CCAAGGAACAATGTTCACAG+GGG | + | chr1.2:53867067-53867086 | MS.gene50599:intron | 45.0% | |
| CCCCAAATTTCCCATTAGCT+TGG | - | chr1.2:53867157-53867176 | None:intergenic | 45.0% | |
| CCTTTGTTGGAGGAGATGTT+GGG | + | chr1.2:53866167-53866186 | MS.gene50599:intron | 45.0% | |
| CTCTTCTTAGCGTGTGTTTG+TGG | + | chr1.2:53865855-53865874 | MS.gene50599:intron | 45.0% | |
| GACAATGAAACGTGCTCGAA+GGG | + | chr1.2:53866448-53866467 | MS.gene50599:intron | 45.0% | |
| GACCAAGGAACAATGTTCAC+AGG | + | chr1.2:53867065-53867084 | MS.gene50599:intron | 45.0% | |
| GACCATAGGTGAGTGGATAA+GGG | - | chr1.2:53867303-53867322 | None:intergenic | 45.0% | |
| GAGTGGATAAGGGGTAAAAC+CGG | - | chr1.2:53867293-53867312 | None:intergenic | 45.0% | |
| GATACCATTGGAAGTGACCA+AGG | + | chr1.2:53867050-53867069 | MS.gene50599:intron | 45.0% | |
| GCATATTGACCATAGGTGAG+TGG | - | chr1.2:53867310-53867329 | None:intergenic | 45.0% | |
| GCATGAACTGCAATGGAAGA+TGG | - | chr1.2:53871777-53871796 | None:intergenic | 45.0% | |
| GCTATTGCTTCTGGTAAAGG+CGG | + | chr1.2:53869738-53869757 | MS.gene50599:CDS | 45.0% | |
| GCTCTTGAGAAAATGACGAG+GGG | + | chr1.2:53872145-53872164 | MS.gene50599:CDS | 45.0% | |
| GGTCACTTCCAATGGTATCA+TGG | - | chr1.2:53867049-53867068 | None:intergenic | 45.0% | |
| GTACAGACACAATATGGGCA+TGG | + | chr1.2:53870926-53870945 | MS.gene50599:intron | 45.0% | |
| GTGACAATCGGATCCAATTG+TGG | - | chr1.2:53867517-53867536 | None:intergenic | 45.0% | |
| TCCTTTGTTGGAGGAGATGT+TGG | + | chr1.2:53866166-53866185 | MS.gene50599:intron | 45.0% | |
| TCTCCTTTGTTCATCGAGGA+GGG | + | chr1.2:53868763-53868782 | MS.gene50599:intron | 45.0% | |
| TCTTCTGTATGTGATGTCGG+GGG | - | chr1.2:53869514-53869533 | None:intergenic | 45.0% | |
| TGACCATAGGTGAGTGGATA+AGG | - | chr1.2:53867304-53867323 | None:intergenic | 45.0% | |
| TGTTCCTTGGTCACTTCCAA+TGG | - | chr1.2:53867057-53867076 | None:intergenic | 45.0% | |
| TTCTCCTTTGTTCATCGAGG+AGG | + | chr1.2:53868762-53868781 | MS.gene50599:intron | 45.0% | |
| ! | TCTTCACTCTCGCTCTTTTC+TGG | - | chr1.2:53868549-53868568 | None:intergenic | 45.0% |
| ! | TTGTTGTTCACGACTTGCGA+AGG | - | chr1.2:53866882-53866901 | None:intergenic | 45.0% |
| ! | TTTGATTTCGCGTCTTGTCG+CGG | + | chr1.2:53868942-53868961 | MS.gene50599:intron | 45.0% |
| !! | ATCAAAGTTGATGAGGCCGA+GGG | + | chr1.2:53869554-53869573 | MS.gene50599:CDS | 45.0% |
| !! | TAAGAGTGTCGGACATCAAC+AGG | - | chr1.2:53871013-53871032 | None:intergenic | 45.0% |
| !! | TGTAGGAGTGTTGGAAACTC+TGG | + | chr1.2:53871108-53871127 | MS.gene50599:intron | 45.0% |
| !!! | TGTCGGTTTTGTAGGAGTGT+TGG | + | chr1.2:53871099-53871118 | MS.gene50599:intron | 45.0% |
| !!! | AAAAAATTCTAATTAATTTT+CGG | - | chr1.2:53867967-53867986 | None:intergenic | 5.0% |
| !!! | AACTATTTTTTTTTTTTTTT+TGG | + | chr1.2:53865745-53865764 | MS.gene50599:intron | 5.0% |
| ACCCCTTATCCACTCACCTA+TGG | + | chr1.2:53867298-53867317 | MS.gene50599:intron | 50.0% | |
| ATAGATATGCCTCCTGGCAC+TGG | + | chr1.2:53872199-53872218 | MS.gene50599:CDS | 50.0% | |
| ATGACGAGGGGAGTTAACTG+GGG | + | chr1.2:53872157-53872176 | MS.gene50599:CDS | 50.0% | |
| ATTTGGACATCACCAGTGCC+AGG | - | chr1.2:53872214-53872233 | None:intergenic | 50.0% | |
| CCCAACATCTCCTCCAACAA+AGG | - | chr1.2:53866170-53866189 | None:intergenic | 50.0% | |
| CCCCTGTGAACATTGTTCCT+TGG | - | chr1.2:53867070-53867089 | None:intergenic | 50.0% | |
| CTCCTTTGTTCATCGAGGAG+GGG | + | chr1.2:53868764-53868783 | MS.gene50599:intron | 50.0% | |
| CTGGTGATAGATATGCCTCC+TGG | + | chr1.2:53872193-53872212 | MS.gene50599:CDS | 50.0% | |
| GCATTGTGCCAGAGATAGCT+CGG | + | chr1.2:53866470-53866489 | MS.gene50599:intron | 50.0% | |
| GGACAATGAAACGTGCTCGA+AGG | + | chr1.2:53866447-53866466 | MS.gene50599:intron | 50.0% | |
| GGGATTTCGTCGTCTAAGTG+CGG | + | chr1.2:53868902-53868921 | MS.gene50599:intron | 50.0% | |
| GTCACAATCCGAGCTATCTC+TGG | - | chr1.2:53866481-53866500 | None:intergenic | 50.0% | |
| GTCGGCAAATCAACAACTGC+TGG | + | chr1.2:53869762-53869781 | MS.gene50599:CDS | 50.0% | |
| TAGCGTGTGTTTGTGGCAAG+AGG | + | chr1.2:53865862-53865881 | MS.gene50599:intron | 50.0% | |
| TGTCGGACATCAACAGGTGT+TGG | - | chr1.2:53871007-53871026 | None:intergenic | 50.0% | |
| ! | GCGAAGCATCTTCGCATTGA+TGG | + | chr1.2:53869699-53869718 | MS.gene50599:CDS | 50.0% |
| ! | TTGGAGGAGATGTTGGGTTG+AGG | + | chr1.2:53866173-53866192 | MS.gene50599:intron | 50.0% |
| !! | CATCAAAGTTGATGAGGCCG+AGG | + | chr1.2:53869553-53869572 | MS.gene50599:CDS | 50.0% |
| AAATGGACGTGCTGCGCAGT+TGG | - | chr1.2:53865817-53865836 | None:intergenic | 55.0% | |
| AGAAGAATGCCCCGATCGTC+TGG | + | chr1.2:53871888-53871907 | MS.gene50599:CDS | 55.0% | |
| CACCCCTCCTCGATGAACAA+AGG | - | chr1.2:53868769-53868788 | None:intergenic | 55.0% | |
| CTGGGGGAACCTTGACATTC+TGG | + | chr1.2:53872174-53872193 | MS.gene50599:CDS | 55.0% | |
| CTTTGTTCATCGAGGAGGGG+TGG | + | chr1.2:53868767-53868786 | MS.gene50599:intron | 55.0% | |
| GCTTCTGGTAAAGGCGGTGT+CGG | + | chr1.2:53869744-53869763 | MS.gene50599:CDS | 55.0% | |
| GGGTTCAACGCGTCTACTCA+CGG | + | chr1.2:53866571-53866590 | MS.gene50599:intron | 55.0% | |
| GGTTCAACGCGTCTACTCAC+GGG | + | chr1.2:53866572-53866591 | MS.gene50599:intron | 55.0% | |
| GTGATGTCGGGGGAAAATCG+TGG | - | chr1.2:53869504-53869523 | None:intergenic | 55.0% | |
| TGACGAGGGGAGTTAACTGG+GGG | + | chr1.2:53872158-53872177 | MS.gene50599:CDS | 55.0% | |
| ! | CATCGAGGAGGGGTGGTTTT+AGG | + | chr1.2:53868774-53868793 | MS.gene50599:intron | 55.0% |
| ! | TCGGGGCATTCTTCTCCACA+AGG | - | chr1.2:53871883-53871902 | None:intergenic | 55.0% |
| AATGCCCCGATCGTCTGGAG+AGG | + | chr1.2:53871893-53871912 | MS.gene50599:CDS | 60.0% | |
| ATGGGGCCTCTCCAGACGAT+CGG | - | chr1.2:53871902-53871921 | None:intergenic | 60.0% | |
| TGGACATCACCAGTGCCAGG+AGG | - | chr1.2:53872211-53872230 | None:intergenic | 60.0% | |
| TTCGTCGTCTAAGTGCGGCG+TGG | + | chr1.2:53868907-53868926 | MS.gene50599:intron | 60.0% | |
| GATCGTCTGGAGAGGCCCCA+TGG | + | chr1.2:53871901-53871920 | MS.gene50599:CDS | 65.0% | |
| TGGGGCCTCTCCAGACGATC+GGG | - | chr1.2:53871901-53871920 | None:intergenic | 65.0% | |
| CGTGCTGCGCAGTTGGCACC+CGG | - | chr1.2:53865810-53865829 | None:intergenic | 70.0% | |
| GGGGCCTCTCCAGACGATCG+GGG | - | chr1.2:53871900-53871919 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53865704 | 53872270 | 53865704 | ID=MS.gene50599 |
| chr1.2 | mRNA | 53865704 | 53872270 | 53865704 | ID=MS.gene50599.t1;Parent=MS.gene50599 |
| chr1.2 | exon | 53865704 | 53865711 | 53865704 | ID=MS.gene50599.t1.exon1;Parent=MS.gene50599.t1 |
| chr1.2 | CDS | 53865704 | 53865711 | 53865704 | ID=cds.MS.gene50599.t1;Parent=MS.gene50599.t1 |
| chr1.2 | exon | 53869467 | 53869575 | 53869467 | ID=MS.gene50599.t1.exon2;Parent=MS.gene50599.t1 |
| chr1.2 | CDS | 53869467 | 53869575 | 53869467 | ID=cds.MS.gene50599.t1;Parent=MS.gene50599.t1 |
| chr1.2 | exon | 53869675 | 53869783 | 53869675 | ID=MS.gene50599.t1.exon3;Parent=MS.gene50599.t1 |
| chr1.2 | CDS | 53869675 | 53869783 | 53869675 | ID=cds.MS.gene50599.t1;Parent=MS.gene50599.t1 |
| chr1.2 | exon | 53870770 | 53870892 | 53870770 | ID=MS.gene50599.t1.exon4;Parent=MS.gene50599.t1 |
| chr1.2 | CDS | 53870770 | 53870892 | 53870770 | ID=cds.MS.gene50599.t1;Parent=MS.gene50599.t1 |
| chr1.2 | exon | 53871825 | 53871922 | 53871825 | ID=MS.gene50599.t1.exon5;Parent=MS.gene50599.t1 |
| chr1.2 | CDS | 53871825 | 53871922 | 53871825 | ID=cds.MS.gene50599.t1;Parent=MS.gene50599.t1 |
| chr1.2 | exon | 53872136 | 53872270 | 53872136 | ID=MS.gene50599.t1.exon6;Parent=MS.gene50599.t1 |
| chr1.2 | CDS | 53872136 | 53872270 | 53872136 | ID=cds.MS.gene50599.t1;Parent=MS.gene50599.t1 |
| Gene Sequence |
| Protein sequence |
