AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50632

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50632.t1 MTR_1g069945 95.455 198 7 1 1 196 50 247 5.21e-135 378
MS.gene50632.t1 MTR_1g069940 88.830 188 19 1 5 190 48 235 2.37e-100 290
MS.gene50632.t1 MTR_4g054740 59.239 184 65 4 14 190 59 239 3.12e-64 198
MS.gene50632.t1 MTR_7g096830 65.341 176 50 3 21 189 68 239 3.32e-62 193
MS.gene50632.t1 MTR_4g054860 54.822 197 80 3 2 190 82 277 8.46e-61 191
MS.gene50632.t1 MTR_4g054360 57.219 187 62 5 21 190 83 268 1.13e-58 185
MS.gene50632.t1 MTR_1g070015 53.988 163 60 4 29 189 65 214 1.31e-47 155
MS.gene50632.t1 MTR_7g096780 63.576 151 52 3 36 186 69 216 1.35e-47 155
MS.gene50632.t1 MTR_1g074370 66.912 136 38 4 52 186 73 202 4.72e-47 154
MS.gene50632.t1 MTR_1g070000 51.149 174 66 6 29 196 65 225 6.93e-46 151
MS.gene50632.t1 MTR_1g069985 54.610 141 58 3 49 189 72 206 2.13e-45 149
MS.gene50632.t1 MTR_1g070020 57.343 143 49 4 49 188 67 200 1.11e-44 147
MS.gene50632.t1 MTR_1g070035 50.311 161 72 2 29 189 59 211 3.97e-43 144
MS.gene50632.t1 MTR_1g043350 58.621 145 49 3 50 194 80 213 4.22e-38 131
MS.gene50632.t1 MTR_1g070045 59.434 106 38 2 43 146 55 157 7.53e-36 124
MS.gene50632.t1 MTR_2g015050 46.667 150 63 5 49 187 131 274 5.53e-32 117
MS.gene50632.t1 MTR_7g021010 52.778 108 49 2 8 114 6 112 1.17e-31 113
MS.gene50632.t1 MTR_7g020980 53.704 108 48 2 8 114 6 112 2.86e-31 112
MS.gene50632.t1 MTR_4g088005 55.914 93 34 2 27 112 25 117 1.22e-30 108
MS.gene50632.t1 MTR_2g015040 70.769 65 19 0 49 113 60 124 2.08e-30 109
MS.gene50632.t1 MTR_1g070070 66.667 69 22 1 44 111 12 80 8.05e-28 102
MS.gene50632.t1 MTR_7g096750 73.333 60 16 0 52 111 20 79 1.90e-27 101
MS.gene50632.t1 MTR_8g006840 67.647 68 22 0 43 110 116 183 2.61e-27 102
MS.gene50632.t1 MTR_1g048610 65.278 72 25 0 52 123 89 160 4.11e-27 103
MS.gene50632.t1 MTR_1g074230 70.492 61 18 0 52 112 19 79 6.41e-27 100
MS.gene50632.t1 MTR_1g074310 68.966 58 18 0 52 109 21 78 7.55e-27 100
MS.gene50632.t1 MTR_8g006815 61.972 71 27 0 52 122 96 166 7.72e-27 101
MS.gene50632.t1 MTR_7g096700 66.667 69 22 1 44 111 11 79 1.09e-26 99.8
MS.gene50632.t1 MTR_4g100380 75.862 58 14 0 52 109 145 202 2.55e-26 102
MS.gene50632.t1 MTR_7g081805 50.000 108 44 3 3 110 22 119 5.16e-26 99.8
MS.gene50632.t1 MTR_7g021010 61.644 73 27 1 42 114 2 73 1.64e-25 96.3
MS.gene50632.t1 MTR_1g090290 66.667 66 22 0 44 109 105 170 2.74e-25 97.4
MS.gene50632.t1 MTR_7g081795 48.387 93 47 1 19 110 26 118 4.36e-25 97.1
MS.gene50632.t1 MTR_8g092460 56.322 87 37 1 26 112 119 204 4.72e-25 99.4
MS.gene50632.t1 MTR_8g006825 57.746 71 30 0 52 122 96 166 5.31e-25 97.1
MS.gene50632.t1 MTR_7g081815 69.492 59 18 0 52 110 61 119 1.09e-24 96.3
MS.gene50632.t1 MTR_2g438180 62.903 62 23 0 52 113 14 75 2.92e-24 93.2
MS.gene50632.t1 MTR_4g100450 67.188 64 21 0 49 112 151 214 3.69e-24 97.1
MS.gene50632.t1 MTR_4g100420 67.188 64 21 0 49 112 154 217 4.09e-24 97.1
MS.gene50632.t1 MTR_4g086190 68.571 70 19 2 52 121 96 162 1.71e-23 93.6
MS.gene50632.t1 MTR_4g086160 41.379 145 63 6 52 194 96 220 1.96e-23 93.6
MS.gene50632.t1 MTR_1g074250 69.492 59 17 1 52 109 19 77 2.15e-23 90.9
MS.gene50632.t1 MTR_4g086165 67.143 70 20 2 52 121 82 148 1.37e-22 90.9
MS.gene50632.t1 MTR_7g096810 66.667 66 22 0 52 117 13 78 3.02e-22 87.8
MS.gene50632.t1 MTR_1g069960 74.138 58 15 0 52 109 27 84 7.34e-22 87.4
MS.gene50632.t1 MTR_5g009620 65.079 63 21 1 46 108 106 167 8.67e-22 90.5
MS.gene50632.t1 MTR_2g105380 58.667 75 30 1 49 123 114 187 2.12e-21 90.5
MS.gene50632.t1 MTR_4g086220 65.672 67 20 2 52 118 96 159 5.63e-21 87.0
MS.gene50632.t1 MTR_2g014300 62.121 66 24 1 52 117 15 79 1.03e-20 84.7
MS.gene50632.t1 MTR_8g022820 64.062 64 22 1 49 112 120 182 1.14e-20 88.6
MS.gene50632.t1 MTR_8g022820 64.062 64 22 1 49 112 121 183 1.16e-20 88.6
MS.gene50632.t1 MTR_8g022820 64.062 64 22 1 49 112 121 183 1.16e-20 88.6
MS.gene50632.t1 MTR_3g090760 40.000 120 56 3 9 117 63 177 1.27e-20 88.2
MS.gene50632.t1 MTR_2g435590 67.797 59 18 1 52 110 96 153 1.34e-20 86.7
MS.gene50632.t1 MTR_1g087920 67.241 58 18 1 52 109 77 133 1.61e-20 87.0
MS.gene50632.t1 MTR_3g053690 53.488 86 34 3 24 109 4 83 2.85e-20 85.1
MS.gene50632.t1 MTR_2g078680 67.241 58 18 1 52 109 31 87 3.14e-20 84.3
MS.gene50632.t1 MTR_5g062700 58.333 72 26 2 41 109 159 229 3.66e-20 87.0
MS.gene50632.t1 MTR_5g085070 67.241 58 18 1 52 109 51 107 4.13e-20 85.9
MS.gene50632.t1 MTR_5g085100 67.241 58 18 1 52 109 46 102 6.42e-20 85.1
MS.gene50632.t1 MTR_1g028560 60.000 70 23 2 49 114 112 180 7.36e-20 85.9
MS.gene50632.t1 MTR_3g074130 62.500 64 23 1 46 109 144 206 8.87e-20 85.5
MS.gene50632.t1 MTR_8g069360 70.175 57 16 1 52 108 44 99 9.17e-20 86.3
MS.gene50632.t1 MTR_1g040430 47.525 101 41 2 21 109 68 168 4.79e-19 81.3
MS.gene50632.t1 MTR_4g078710 63.793 58 20 1 52 109 28 84 6.73e-19 81.3
MS.gene50632.t1 MTR_2g090235 58.571 70 28 1 41 110 207 275 8.27e-19 83.6
MS.gene50632.t1 MTR_8g090350 58.462 65 26 1 46 110 107 170 9.79e-19 82.0
MS.gene50632.t1 MTR_4g119270 61.905 63 22 2 46 108 48 108 1.28e-18 82.4
MS.gene50632.t1 MTR_8g099215 52.703 74 30 2 52 125 107 175 1.77e-18 81.6
MS.gene50632.t1 MTR_2g014340 63.793 58 20 1 52 109 19 75 2.27e-18 79.3
MS.gene50632.t1 MTR_0939s0010 57.534 73 25 2 52 119 65 136 3.68e-18 79.0
MS.gene50632.t1 MTR_3g110205 46.237 93 49 1 18 110 9 100 5.53e-18 78.2
MS.gene50632.t1 MTR_8g006410 52.857 70 32 1 43 112 43 111 6.44e-18 78.6
MS.gene50632.t1 MTR_7g084370 68.966 58 15 2 52 108 42 97 8.88e-18 79.3
MS.gene50632.t1 MTR_2g019750 63.158 57 20 1 52 108 50 105 1.22e-17 79.3
MS.gene50632.t1 MTR_1g090170 50.667 75 36 1 35 109 135 208 1.32e-17 79.3
MS.gene50632.t1 MTR_2g089170 62.069 58 21 1 52 109 65 121 1.81e-17 76.6
MS.gene50632.t1 MTR_8g102800 54.286 70 24 2 48 110 26 94 1.90e-17 77.8
MS.gene50632.t1 MTR_1g090170 62.069 58 21 1 52 109 239 295 1.94e-17 79.7
MS.gene50632.t1 MTR_5g075570 60.345 58 22 1 52 109 124 180 2.84e-17 78.2
MS.gene50632.t1 MTR_5g032820 64.912 57 19 1 52 108 46 101 3.05e-17 79.0
MS.gene50632.t1 MTR_5g083340 56.164 73 25 3 52 119 85 155 4.98e-17 78.6
MS.gene50632.t1 MTR_6g088405 59.322 59 23 1 52 110 44 101 5.20e-17 76.3
MS.gene50632.t1 MTR_3g102100 43.529 85 45 2 28 110 19 102 7.48e-17 74.7
MS.gene50632.t1 MTR_4g111915 39.450 109 60 3 6 109 2 109 8.67e-17 73.9
MS.gene50632.t1 MTR_2g101340 55.932 59 25 1 52 110 41 98 9.49e-17 75.1
MS.gene50632.t1 MTR_1g019110 40.000 100 58 2 20 119 13 110 1.16e-16 74.3
MS.gene50632.t1 MTR_8g013860 43.529 85 30 2 43 110 21 104 5.41e-16 73.2
MS.gene50632.t1 MTR_3g095190 64.789 71 24 1 42 112 160 229 6.48e-16 75.1
MS.gene50632.t1 MTR_4g112490 39.450 109 60 3 6 109 2 109 9.56e-16 72.4
MS.gene50632.t1 MTR_4g100650 57.627 59 24 1 52 110 74 131 9.64e-16 73.6
MS.gene50632.t1 MTR_3g098580 68.750 64 19 1 49 112 73 135 1.13e-15 73.2
MS.gene50632.t1 MTR_7g046260 56.452 62 25 2 49 109 57 117 1.18e-15 72.8
MS.gene50632.t1 MTR_5g008540 45.714 70 37 1 43 112 15 83 1.94e-15 68.9
MS.gene50632.t1 MTR_1g014780 45.556 90 44 3 23 109 7 94 2.60e-15 72.0
MS.gene50632.t1 MTR_5g012910 53.968 63 27 2 49 110 24 85 2.95e-15 70.9
MS.gene50632.t1 MTR_7g092190 55.172 58 25 1 52 109 30 86 7.47e-15 71.6
MS.gene50632.t1 MTR_6g029180 52.308 65 30 1 52 116 33 96 1.14e-14 71.2
MS.gene50632.t1 MTR_4g035430 49.180 61 30 1 52 112 32 91 1.40e-14 69.7
MS.gene50632.t1 MTR_4g082345 37.113 97 60 1 12 108 8 103 1.42e-14 70.9
MS.gene50632.t1 MTR_8g032610 46.250 80 41 2 30 108 4 82 1.91e-14 70.5
MS.gene50632.t1 MTR_7g117690 49.180 61 30 1 52 112 28 87 2.01e-14 68.2
MS.gene50632.t1 MTR_3g106290 50.000 64 31 1 46 109 2 64 2.69e-14 68.6
MS.gene50632.t1 MTR_2g043050 52.459 61 26 2 52 111 19 77 2.84e-14 68.9
MS.gene50632.t1 MTR_8g027465 49.206 63 31 1 52 114 39 100 4.03e-14 67.8
MS.gene50632.t1 MTR_5g083330 48.000 75 38 1 49 123 32 105 4.29e-14 69.3
MS.gene50632.t1 MTR_7g011630 53.333 60 27 1 49 108 39 97 4.95e-14 70.1
MS.gene50632.t1 MTR_4g008860 51.613 62 29 1 48 109 4 64 6.82e-14 67.4
MS.gene50632.t1 MTR_4g114570 51.471 68 28 2 42 109 1 63 7.35e-14 67.8
MS.gene50632.t1 MTR_6g012970 51.667 60 28 1 49 108 35 93 1.06e-13 68.9
MS.gene50632.t1 MTR_5g082950 59.649 57 22 1 52 108 66 121 1.43e-13 68.2
MS.gene50632.t1 MTR_2g043030 50.820 61 27 2 52 111 19 77 1.60e-13 66.6
MS.gene50632.t1 MTR_7g085810 42.683 82 41 2 52 128 30 110 1.68e-13 67.4
MS.gene50632.t1 MTR_1g014800 42.169 83 43 3 30 109 7 87 1.79e-13 66.6
MS.gene50632.t1 MTR_2g103700 52.459 61 28 1 52 112 7 66 1.85e-13 65.9
MS.gene50632.t1 MTR_1g014860 48.485 66 31 2 45 109 15 78 1.96e-13 66.6
MS.gene50632.t1 MTR_1g014820 48.485 66 31 2 45 109 20 83 2.82e-13 66.6
MS.gene50632.t1 MTR_5g016750 50.000 62 30 1 49 110 22 82 2.89e-13 65.5
MS.gene50632.t1 MTR_6g465510 41.176 85 36 2 43 114 11 94 3.12e-13 65.9
MS.gene50632.t1 MTR_8g023680 40.206 97 55 3 1 97 67 160 3.23e-13 67.4
MS.gene50632.t1 MTR_5g008470 42.667 75 36 2 54 122 77 150 3.27e-13 65.5
MS.gene50632.t1 MTR_6g465430 41.935 93 51 2 52 143 54 144 4.50e-13 65.9
MS.gene50632.t1 MTR_2g016730 52.174 69 30 2 44 110 15 82 4.64e-13 66.6
MS.gene50632.t1 MTR_8g085960 52.632 57 26 1 52 108 25 80 4.76e-13 65.9
MS.gene50632.t1 MTR_4g010640 51.667 60 28 1 50 109 5 63 5.04e-13 65.5
MS.gene50632.t1 MTR_6g033255 60.759 79 27 2 31 109 2 76 6.38e-13 65.1
MS.gene50632.t1 MTR_1g074290 60.000 60 24 0 52 111 17 76 6.38e-13 63.9
MS.gene50632.t1 MTR_6g088425 61.017 59 22 1 52 110 49 106 6.53e-13 65.5
MS.gene50632.t1 MTR_1g074280 56.667 60 26 0 52 111 17 76 6.90e-13 63.2
MS.gene50632.t1 MTR_1g097190 56.000 50 21 1 52 101 23 71 1.06e-12 63.2
MS.gene50632.t1 MTR_5g057810 61.538 52 17 2 41 92 79 127 1.07e-12 65.5
MS.gene50632.t1 MTR_5g057647 61.538 52 17 2 41 92 79 127 1.07e-12 65.5
MS.gene50632.t1 MTR_6g465530 40.698 86 37 2 36 108 4 88 1.39e-12 63.9
MS.gene50632.t1 MTR_7g070220 53.125 64 22 2 52 108 78 140 1.41e-12 65.9
MS.gene50632.t1 MTR_6g465420 40.860 93 52 2 52 143 54 144 1.60e-12 64.7
MS.gene50632.t1 MTR_2g043040 49.180 61 28 2 52 111 19 77 1.67e-12 64.3
MS.gene50632.t1 MTR_1g101600 50.877 57 27 1 52 108 41 96 2.48e-12 63.2
MS.gene50632.t1 MTR_1g006660 55.714 70 27 3 49 117 43 109 2.62e-12 63.9
MS.gene50632.t1 MTR_5g085125 55.172 58 25 1 52 109 16 72 2.80e-12 62.4
MS.gene50632.t1 MTR_3g017420 50.794 63 27 2 59 118 2 63 3.11e-12 60.1
MS.gene50632.t1 MTR_6g465460 45.333 75 34 2 52 120 54 127 4.37e-12 63.5
MS.gene50632.t1 MTR_6g466130 49.206 63 31 1 52 114 66 127 5.59e-12 62.8
MS.gene50632.t1 MTR_6g465450 33.913 115 72 2 3 114 2 115 5.95e-12 62.8
MS.gene50632.t1 MTR_1g105400 40.625 96 36 4 48 139 111 189 6.57e-12 63.5
MS.gene50632.t1 MTR_6g465690 36.066 122 67 6 3 114 4 124 6.59e-12 62.8
MS.gene50632.t1 MTR_2g085015 43.548 62 34 1 52 112 47 108 7.37e-12 62.4
MS.gene50632.t1 MTR_3g112440 60.317 63 24 1 48 110 35 96 8.39e-12 62.4
MS.gene50632.t1 MTR_6g466000 46.032 63 33 1 52 114 57 118 1.07e-11 62.0
MS.gene50632.t1 MTR_1g110970 30.556 180 104 7 11 185 57 220 1.46e-11 62.4
MS.gene50632.t1 MTR_4g102670 53.448 58 25 2 52 109 15 70 1.58e-11 60.5
MS.gene50632.t1 MTR_2g043020 47.541 61 29 2 52 111 19 77 2.46e-11 60.5
MS.gene50632.t1 MTR_1g074270 59.091 44 17 1 67 109 22 65 5.47e-11 57.8
MS.gene50632.t1 MTR_8g010340 63.043 46 16 1 63 108 118 162 6.42e-11 60.5
MS.gene50632.t1 MTR_7g080460 33.051 118 61 3 21 120 222 339 9.72e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50632.t1 AT3G23240 52.727 165 68 5 22 186 55 209 1.37e-50 163
MS.gene50632.t1 AT2G31230 51.875 160 52 4 49 186 83 239 2.16e-48 158
MS.gene50632.t1 AT1G06160 48.171 164 55 4 50 186 80 240 2.88e-37 129
MS.gene50632.t1 AT5G43410 75.000 60 15 0 52 111 15 74 1.68e-28 103
MS.gene50632.t1 AT5G47220 58.750 80 33 0 30 109 95 174 1.87e-28 107
MS.gene50632.t1 AT5G51190 53.608 97 43 2 14 109 34 129 3.47e-28 105
MS.gene50632.t1 AT3G23230 72.414 58 16 0 52 109 20 77 1.01e-27 102
MS.gene50632.t1 AT4G17500 75.862 58 14 0 52 109 148 205 1.48e-26 102
MS.gene50632.t1 AT2G33710 51.456 103 49 1 10 112 28 129 9.44e-26 99.4
MS.gene50632.t1 AT2G44840 71.186 59 17 0 52 110 92 150 9.61e-26 99.4
MS.gene50632.t1 AT2G33710 51.456 103 49 1 10 112 28 129 1.41e-25 99.4
MS.gene50632.t1 AT5G61600 66.667 63 21 0 50 112 86 148 1.74e-25 99.4
MS.gene50632.t1 AT4G18450 63.514 74 26 1 46 118 104 177 1.76e-25 100
MS.gene50632.t1 AT5G47230 59.036 83 31 1 33 112 134 216 2.85e-25 99.8
MS.gene50632.t1 AT4G17490 65.714 70 24 0 43 112 128 197 3.18e-25 99.4
MS.gene50632.t1 AT5G61890 49.057 106 44 2 7 112 54 149 1.92e-24 96.7
MS.gene50632.t1 AT5G13330 67.188 64 20 1 49 112 36 98 6.14e-24 94.4
MS.gene50632.t1 AT5G07580 65.079 63 22 0 50 112 108 170 4.26e-23 92.0
MS.gene50632.t1 AT3G16770 67.742 62 19 1 49 110 76 136 9.79e-23 92.0
MS.gene50632.t1 AT4G13620 53.659 82 37 1 29 110 209 289 1.12e-22 94.0
MS.gene50632.t1 AT4G11140 61.429 70 26 1 50 119 85 153 1.81e-22 92.0
MS.gene50632.t1 AT2G47520 64.062 64 22 1 52 115 50 112 3.64e-22 88.6
MS.gene50632.t1 AT1G04370 72.131 61 17 0 52 112 20 80 1.09e-21 86.3
MS.gene50632.t1 AT3G23220 64.706 68 22 1 52 119 14 79 2.52e-21 85.5
MS.gene50632.t1 AT2G22200 53.012 83 35 3 38 120 59 137 1.06e-20 87.0
MS.gene50632.t1 AT1G72360 65.517 58 19 1 52 109 25 81 1.23e-20 85.9
MS.gene50632.t1 AT1G22190 60.606 66 25 1 45 110 76 140 1.31e-20 86.7
MS.gene50632.t1 AT5G65130 51.852 81 37 2 45 125 106 184 2.56e-20 86.3
MS.gene50632.t1 AT5G65130 51.852 81 37 2 45 125 104 182 2.72e-20 86.3
MS.gene50632.t1 AT1G72360 54.321 81 32 2 29 109 55 130 3.17e-20 85.5
MS.gene50632.t1 AT1G72360 65.517 58 19 1 52 109 76 132 3.86e-20 85.5
MS.gene50632.t1 AT2G20880 60.000 70 27 1 41 110 176 244 4.54e-20 86.3
MS.gene50632.t1 AT1G78080 64.062 64 22 1 46 109 146 208 6.08e-20 85.9
MS.gene50632.t1 AT1G36060 46.903 113 44 4 3 109 97 199 1.18e-19 85.1
MS.gene50632.t1 AT3G15210 65.517 58 19 1 52 109 25 81 1.22e-19 83.2
MS.gene50632.t1 AT1G03800 63.793 58 20 1 52 109 53 109 1.49e-19 83.6
MS.gene50632.t1 AT1G28360 62.295 61 22 1 52 112 12 71 1.65e-19 82.4
MS.gene50632.t1 AT3G61630 60.938 64 23 2 45 108 99 160 2.07e-19 84.3
MS.gene50632.t1 AT5G18560 63.235 68 20 3 48 112 52 117 2.31e-19 84.7
MS.gene50632.t1 AT4G28140 61.290 62 23 1 52 113 143 203 2.34e-19 84.0
MS.gene50632.t1 AT3G20310 54.430 79 34 2 35 112 9 86 3.89e-19 82.4
MS.gene50632.t1 AT5G44210 65.517 58 19 1 52 109 33 89 4.20e-19 81.3
MS.gene50632.t1 AT1G28370 62.069 58 21 1 52 109 58 114 5.86e-19 81.3
MS.gene50632.t1 AT1G28370 62.069 58 21 1 52 109 20 76 6.25e-19 80.1
MS.gene50632.t1 AT4G39780 45.161 93 49 2 18 110 60 150 7.74e-19 82.0
MS.gene50632.t1 AT1G50640 63.333 60 21 1 52 111 28 86 1.12e-18 80.9
MS.gene50632.t1 AT5G13910 66.667 57 18 1 52 108 20 75 1.31e-18 80.5
MS.gene50632.t1 AT5G50080 75.000 64 15 1 49 112 74 136 5.30e-18 79.0
MS.gene50632.t1 AT5G50080 75.000 64 15 1 49 112 83 145 5.30e-18 79.0
MS.gene50632.t1 AT4G27950 61.404 57 21 1 52 108 118 173 5.43e-18 80.9
MS.gene50632.t1 AT1G12980 48.864 88 42 2 52 137 57 143 6.12e-18 80.5
MS.gene50632.t1 AT1G28160 66.667 57 18 1 52 108 39 94 9.19e-18 79.0
MS.gene50632.t1 AT5G07310 52.381 105 44 3 8 110 49 149 9.95e-18 79.0
MS.gene50632.t1 AT4G23750 50.000 80 34 2 29 108 104 177 1.20e-17 79.7
MS.gene50632.t1 AT4G23750 50.000 80 34 2 29 108 104 177 1.20e-17 79.7
MS.gene50632.t1 AT5G61590 66.129 62 21 0 50 111 105 166 1.56e-17 77.4
MS.gene50632.t1 AT2G46310 61.404 57 21 1 52 108 99 154 1.58e-17 79.0
MS.gene50632.t1 AT3G11020 57.812 64 26 1 52 115 78 140 2.07e-17 79.0
MS.gene50632.t1 AT1G12890 63.158 57 20 1 52 108 21 76 2.35e-17 77.0
MS.gene50632.t1 AT4G32800 57.143 63 25 2 49 110 15 76 2.38e-17 77.4
MS.gene50632.t1 AT2G25820 61.017 59 22 1 52 110 26 83 2.63e-17 77.0
MS.gene50632.t1 AT3G16280 61.017 59 22 1 52 110 79 136 3.10e-17 77.4
MS.gene50632.t1 AT3G16280 61.017 59 22 1 52 110 61 118 3.68e-17 77.0
MS.gene50632.t1 AT1G43160 51.485 101 34 3 31 118 28 126 5.04e-17 75.9
MS.gene50632.t1 AT5G53290 59.649 57 22 1 52 108 125 180 5.66e-17 78.2
MS.gene50632.t1 AT3G50260 48.611 72 36 1 49 120 18 88 5.92e-17 74.7
MS.gene50632.t1 AT1G24590 64.912 57 19 1 52 108 58 113 6.33e-17 77.4
MS.gene50632.t1 AT5G11590 58.730 63 24 2 49 110 47 108 7.19e-17 76.3
MS.gene50632.t1 AT5G64750 66.667 54 17 1 59 112 192 244 7.91e-17 77.8
MS.gene50632.t1 AT1G75490 57.377 61 25 1 52 112 42 101 9.05e-17 75.5
MS.gene50632.t1 AT4G06746 41.758 91 44 2 33 115 9 98 9.68e-17 73.9
MS.gene50632.t1 AT5G67190 50.000 70 34 1 50 119 19 87 1.42e-16 74.3
MS.gene50632.t1 AT1G22985 58.065 62 24 1 49 108 72 133 2.58e-16 73.2
MS.gene50632.t1 AT1G46768 49.254 67 33 1 49 115 28 93 3.55e-16 72.4
MS.gene50632.t1 AT5G25810 55.556 63 26 2 49 110 32 93 3.79e-16 73.9
MS.gene50632.t1 AT1G71450 58.333 60 22 2 52 110 24 81 3.86e-16 73.2
MS.gene50632.t1 AT1G46768 49.254 67 33 1 49 115 28 93 3.90e-16 72.4
MS.gene50632.t1 AT1G46768 49.254 67 33 1 49 115 28 93 3.90e-16 72.4
MS.gene50632.t1 AT5G05410 58.621 58 23 1 52 109 79 135 4.59e-16 75.1
MS.gene50632.t1 AT5G05410 58.621 58 23 1 52 109 79 135 6.11e-16 75.1
MS.gene50632.t1 AT4G36900 52.459 61 28 1 50 110 28 87 8.95e-16 72.4
MS.gene50632.t1 AT4G34410 70.690 58 16 1 52 109 136 192 9.34e-16 73.6
MS.gene50632.t1 AT4G31060 51.667 60 28 1 52 111 27 85 9.42e-16 72.4
MS.gene50632.t1 AT3G57600 56.897 58 24 1 52 109 28 84 1.11e-15 73.6
MS.gene50632.t1 AT2G35700 55.932 59 25 1 52 110 45 102 1.29e-15 72.0
MS.gene50632.t1 AT4G16750 43.434 99 52 3 13 110 2 97 1.51e-15 71.6
MS.gene50632.t1 AT3G60490 55.932 59 25 1 52 110 71 128 1.53e-15 72.8
MS.gene50632.t1 AT4G25480 38.679 106 51 2 36 128 22 126 1.60e-15 72.4
MS.gene50632.t1 AT2G44940 56.452 62 25 2 49 109 96 156 1.99e-15 73.2
MS.gene50632.t1 AT2G23340 52.459 61 28 1 50 110 26 85 2.37e-15 70.9
MS.gene50632.t1 AT1G71130 47.222 72 32 2 42 108 69 139 9.19e-15 68.9
MS.gene50632.t1 AT2G40340 53.846 65 29 1 52 116 14 77 9.30e-15 71.2
MS.gene50632.t1 AT2G40340 53.846 65 29 1 52 116 14 77 9.30e-15 71.2
MS.gene50632.t1 AT2G40340 53.846 65 29 1 52 116 14 77 9.30e-15 71.2
MS.gene50632.t1 AT1G01250 38.318 107 61 3 7 112 2 104 1.26e-14 69.3
MS.gene50632.t1 AT2G40340 53.846 65 29 1 52 116 72 135 1.36e-14 71.2
MS.gene50632.t1 AT2G40340 53.846 65 29 1 52 116 79 142 1.44e-14 71.2
MS.gene50632.t1 AT2G40340 53.846 65 29 1 52 116 72 135 1.48e-14 70.9
MS.gene50632.t1 AT4G25490 36.792 106 53 2 36 128 19 123 1.72e-14 69.3
MS.gene50632.t1 AT5G25390 55.000 60 26 1 50 109 5 63 2.07e-14 68.6
MS.gene50632.t1 AT5G25390 53.333 60 24 1 50 109 5 60 3.80e-14 67.8
MS.gene50632.t1 AT5G51990 35.833 120 63 3 36 142 25 143 3.86e-14 68.6
MS.gene50632.t1 AT4G25470 34.513 113 60 2 36 135 22 133 4.47e-14 68.2
MS.gene50632.t1 AT1G21910 43.836 73 40 1 52 124 50 121 5.47e-14 68.2
MS.gene50632.t1 AT5G19790 55.000 60 26 1 49 108 19 77 9.27e-14 68.2
MS.gene50632.t1 AT1G53910 62.121 66 24 1 49 114 120 184 1.12e-13 68.6
MS.gene50632.t1 AT5G18450 54.386 57 25 1 52 108 34 89 1.15e-13 68.6
MS.gene50632.t1 AT1G53910 62.121 66 24 1 49 114 122 186 1.16e-13 68.6
MS.gene50632.t1 AT1G53910 62.121 66 24 1 49 114 122 186 1.16e-13 68.6
MS.gene50632.t1 AT3G14230 65.079 63 21 1 49 111 120 181 2.26e-13 67.8
MS.gene50632.t1 AT3G14230 65.079 63 21 1 49 111 121 182 2.31e-13 67.8
MS.gene50632.t1 AT3G14230 65.079 63 21 1 49 111 125 186 2.57e-13 67.8
MS.gene50632.t1 AT5G21960 50.746 67 28 3 46 111 3 65 2.70e-13 66.2
MS.gene50632.t1 AT1G15360 51.667 60 28 1 50 109 5 63 3.05e-13 65.9
MS.gene50632.t1 AT1G15360 51.667 60 28 1 50 109 5 63 3.05e-13 65.9
MS.gene50632.t1 AT5G25190 50.000 62 30 1 48 109 4 64 4.02e-13 65.1
MS.gene50632.t1 AT2G40350 51.724 58 27 1 52 109 74 130 4.13e-13 64.7
MS.gene50632.t1 AT2G40350 51.724 58 27 1 52 109 67 123 4.17e-13 64.7
MS.gene50632.t1 AT1G22810 32.576 132 82 5 52 180 14 141 7.58e-13 63.5
MS.gene50632.t1 AT1G19210 47.059 68 33 2 45 111 5 70 1.43e-12 63.5
MS.gene50632.t1 AT2G36450 54.839 62 26 2 52 112 15 75 1.48e-12 63.5
MS.gene50632.t1 AT1G77200 59.322 59 23 1 52 110 43 100 1.93e-12 64.3
MS.gene50632.t1 AT1G74930 48.276 58 29 1 52 109 21 77 5.02e-12 62.4
MS.gene50632.t1 AT1G53170 63.158 57 20 1 52 108 31 86 7.92e-12 61.6
MS.gene50632.t1 AT1G49120 37.963 108 48 4 52 158 87 176 6.78e-11 60.5
MS.gene50632.t1 AT2G38340 43.878 98 43 3 33 119 48 144 7.96e-11 59.7

Find 36 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTTGGGTTCTGAATATT+TGG 0.154451 1.2:-53220613 MS.gene50632:CDS
CATTTCCCTTTCTACCCTTT+TGG 0.221061 1.2:+53220674 None:intergenic
CTTTGAATGTTTGTGTGTTT+TGG 0.226534 1.2:+53221123 None:intergenic
AGATGGTACTTCTCCTGTTT+TGG 0.273419 1.2:-53220754 MS.gene50632:CDS
CTAGAAATGGTGTTAGAGTT+TGG 0.280251 1.2:-53220926 MS.gene50632:CDS
TGTGTTGGTGTTGGAAGATT+TGG 0.282257 1.2:-53220628 MS.gene50632:CDS
TCTAGTTGAGTCTCTTATTT+CGG 0.319532 1.2:+53220944 None:intergenic
ACTCCTCTATATGGCCTCTT+AGG 0.322295 1.2:+53220996 None:intergenic
CTTCTTCTGACTCCTCTATA+TGG 0.330453 1.2:+53220987 None:intergenic
GATTCCCTAACAACATCTTC+AGG 0.398011 1.2:+53220813 None:intergenic
ACATGGTGATTAACAAGTCT+TGG 0.420230 1.2:-53220782 MS.gene50632:CDS
ATAAGAGACTCAACTAGAAA+TGG 0.420316 1.2:-53220939 MS.gene50632:CDS
GTGTTGGTGTTGGAAGATTT+GGG 0.441535 1.2:-53220627 MS.gene50632:CDS
AAAGACCAAAAGGGTAGAAA+GGG 0.446211 1.2:-53220679 MS.gene50632:CDS
AGAGTTTGAAGTGTTAGAGT+TGG 0.447307 1.2:+53221082 None:intergenic
TTCCTCTTGAGTGCCAAAAC+AGG 0.466166 1.2:+53220741 None:intergenic
CATGGTGATTAACAAGTCTT+GGG 0.479118 1.2:-53220781 MS.gene50632:CDS
AAAAGACCAAAAGGGTAGAA+AGG 0.482708 1.2:-53220680 MS.gene50632:CDS
TTTATCAACAAGAGGATCAA+TGG 0.486848 1.2:-53220850 MS.gene50632:CDS
CAAAAGGGTAGAAAGGGAAA+TGG 0.495878 1.2:-53220673 MS.gene50632:CDS
TTCACAAAATGTGTTGGTGT+TGG 0.521963 1.2:-53220637 MS.gene50632:CDS
TTCATCGAATTCAACTCCAT+TGG 0.522070 1.2:-53221033 MS.gene50632:CDS
AAGAAGTCAAGCTAAGAAGT+TGG 0.529850 1.2:+53220589 None:intergenic
AATGGTGTTAGAGTTTGGAT+TGG 0.530928 1.2:-53220921 MS.gene50632:CDS
TACAATCATCATCACCTAAG+AGG 0.546908 1.2:-53221010 MS.gene50632:CDS
AGTGTTAGAGTTGGAATGAG+AGG 0.548088 1.2:+53221091 None:intergenic
AGGAGTCAGAAGAAGACCAT+GGG 0.548918 1.2:-53220979 MS.gene50632:CDS
TCACCTAAGAGGCCATATAG+AGG 0.553591 1.2:-53220999 MS.gene50632:CDS
GGTGATGATGATTGTACCAA+TGG 0.567069 1.2:+53221017 None:intergenic
CATTGTTTCACAAAATGTGT+TGG 0.569828 1.2:-53220643 MS.gene50632:CDS
CAAGCAGCTTTATCAACAAG+AGG 0.595081 1.2:-53220858 MS.gene50632:CDS
AAGACCATGGGGAAAATTCG+CGG 0.604508 1.2:-53220967 MS.gene50632:CDS
GAGGAGTCAGAAGAAGACCA+TGG 0.608039 1.2:-53220980 MS.gene50632:CDS
TTCAAACTCTCAAGTCAGCA+CGG 0.613314 1.2:-53221069 MS.gene50632:CDS
TAGGGAATCATTGAAAGACA+TGG 0.634974 1.2:-53220799 MS.gene50632:CDS
GGAGTCAGAAGAAGACCATG+GGG 0.662762 1.2:-53220978 MS.gene50632:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAATTGCAAAAAGACCAAAA+GGG - chr1.2:53221018-53221037 MS.gene50632:CDS 25.0%
ATAAGAGACTCAACTAGAAA+TGG - chr1.2:53220767-53220786 MS.gene50632:CDS 30.0%
CATTGTTTCACAAAATGTGT+TGG - chr1.2:53221063-53221082 MS.gene50632:CDS 30.0%
GTAATTGCAAAAAGACCAAA+AGG - chr1.2:53221017-53221036 MS.gene50632:CDS 30.0%
TTTATCAACAAGAGGATCAA+TGG - chr1.2:53220856-53220875 MS.gene50632:CDS 30.0%
! ATTTTCCTGAAGATGTTGTT+AGG - chr1.2:53220888-53220907 MS.gene50632:CDS 30.0%
! CTTTGAATGTTTGTGTGTTT+TGG + chr1.2:53220586-53220605 None:intergenic 30.0%
! TCTAGTTGAGTCTCTTATTT+CGG + chr1.2:53220765-53220784 None:intergenic 30.0%
! TTTTCCTGAAGATGTTGTTA+GGG - chr1.2:53220889-53220908 MS.gene50632:CDS 30.0%
!! AGATTTGGGTTCTGAATATT+TGG - chr1.2:53221093-53221112 MS.gene50632:CDS 30.0%
AAAAGACCAAAAGGGTAGAA+AGG - chr1.2:53221026-53221045 MS.gene50632:CDS 35.0%
AAAGACCAAAAGGGTAGAAA+GGG - chr1.2:53221027-53221046 MS.gene50632:CDS 35.0%
AACAAGTCTTGGGAAAAAGA+TGG - chr1.2:53220935-53220954 MS.gene50632:CDS 35.0%
AAGAAGTCAAGCTAAGAAGT+TGG + chr1.2:53221120-53221139 None:intergenic 35.0%
ACATGGTGATTAACAAGTCT+TGG - chr1.2:53220924-53220943 MS.gene50632:CDS 35.0%
CATGGTGATTAACAAGTCTT+GGG - chr1.2:53220925-53220944 MS.gene50632:CDS 35.0%
TACAATCATCATCACCTAAG+AGG - chr1.2:53220696-53220715 MS.gene50632:CDS 35.0%
TAGGGAATCATTGAAAGACA+TGG - chr1.2:53220907-53220926 MS.gene50632:CDS 35.0%
TTCATCGAATTCAACTCCAT+TGG - chr1.2:53220673-53220692 MS.gene50632:CDS 35.0%
! AATGGTGTTAGAGTTTGGAT+TGG - chr1.2:53220785-53220804 MS.gene50632:CDS 35.0%
! AGAGTTTGAAGTGTTAGAGT+TGG + chr1.2:53220627-53220646 None:intergenic 35.0%
! CTAGAAATGGTGTTAGAGTT+TGG - chr1.2:53220780-53220799 MS.gene50632:CDS 35.0%
! TTCACAAAATGTGTTGGTGT+TGG - chr1.2:53221069-53221088 MS.gene50632:CDS 35.0%
AGTGTTAGAGTTGGAATGAG+AGG + chr1.2:53220618-53220637 None:intergenic 40.0%
CAAAAGGGTAGAAAGGGAAA+TGG - chr1.2:53221033-53221052 MS.gene50632:CDS 40.0%
CTTCTTCTGACTCCTCTATA+TGG + chr1.2:53220722-53220741 None:intergenic 40.0%
GATTCCCTAACAACATCTTC+AGG + chr1.2:53220896-53220915 None:intergenic 40.0%
TTCAAACTCTCAAGTCAGCA+CGG - chr1.2:53220637-53220656 MS.gene50632:CDS 40.0%
! AGATGGTACTTCTCCTGTTT+TGG - chr1.2:53220952-53220971 MS.gene50632:CDS 40.0%
! CAAGCAGCTTTATCAACAAG+AGG - chr1.2:53220848-53220867 MS.gene50632:CDS 40.0%
! CATTTCCCTTTCTACCCTTT+TGG + chr1.2:53221035-53221054 None:intergenic 40.0%
! GGTGATGATGATTGTACCAA+TGG + chr1.2:53220692-53220711 None:intergenic 40.0%
!! GTGTTGGTGTTGGAAGATTT+GGG - chr1.2:53221079-53221098 MS.gene50632:CDS 40.0%
!! TGTGTTGGTGTTGGAAGATT+TGG - chr1.2:53221078-53221097 MS.gene50632:CDS 40.0%
AAGACCATGGGGAAAATTCG+CGG - chr1.2:53220739-53220758 MS.gene50632:CDS 45.0%
ACTCCTCTATATGGCCTCTT+AGG + chr1.2:53220713-53220732 None:intergenic 45.0%
AGGAGTCAGAAGAAGACCAT+GGG - chr1.2:53220727-53220746 MS.gene50632:CDS 45.0%
TCACCTAAGAGGCCATATAG+AGG - chr1.2:53220707-53220726 MS.gene50632:CDS 45.0%
TTCCTCTTGAGTGCCAAAAC+AGG + chr1.2:53220968-53220987 None:intergenic 45.0%
GAGGAGTCAGAAGAAGACCA+TGG - chr1.2:53220726-53220745 MS.gene50632:CDS 50.0%
GGAGTCAGAAGAAGACCATG+GGG - chr1.2:53220728-53220747 MS.gene50632:CDS 50.0%
!!! CTCCTGTTTTGGCACTCAAG+AGG - chr1.2:53220963-53220982 MS.gene50632:CDS 50.0%
! TCGGCCGCGAATTTTCCCCA+TGG + chr1.2:53220746-53220765 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 53220569 53221159 53220569 ID=MS.gene50632
chr1.2 mRNA 53220569 53221159 53220569 ID=MS.gene50632.t1;Parent=MS.gene50632
chr1.2 exon 53220569 53221159 53220569 ID=MS.gene50632.t1.exon1;Parent=MS.gene50632.t1
chr1.2 CDS 53220569 53221159 53220569 ID=cds.MS.gene50632.t1;Parent=MS.gene50632.t1
Gene Sequence

>MS.gene50632

ATGAATTTCACTGACCAAAACACACAAACATTCAAAGAATCATCAACCTCTCATTCCAACTCTAACACTTCAAACTCTCAAGTCAGCACGGAATCACAAGAAGTTTCATCGAATTCAACTCCATTGGTACAATCATCATCACCTAAGAGGCCATATAGAGGAGTCAGAAGAAGACCATGGGGAAAATTCGCGGCCGAAATAAGAGACTCAACTAGAAATGGTGTTAGAGTTTGGATTGGTACATTTGATACAGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGATCAATGGCAGTGTTGAATTTTCCTGAAGATGTTGTTAGGGAATCATTGAAAGACATGGTGATTAACAAGTCTTGGGAAAAAGATGGTACTTCTCCTGTTTTGGCACTCAAGAGGAAACACACTTTGAAAAGAAAGTCTAAAGCAAGTAATTGCAAAAAGACCAAAAGGGTAGAAAGGGAAATGGAGAATAACATTGTTTCACAAAATGTGTTGGTGTTGGAAGATTTGGGTTCTGAATATTTGGACCAACTTCTTAGCTTGACTTCTTCTTCTCAAGACTTTTTCTAG
Protein sequence

>MS.gene50632.t1

MNFTDQNTQTFKESSTSHSNSNTSNSQVSTESQEVSSNSTPLVQSSSPKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEDVVRESLKDMVINKSWEKDGTSPVLALKRKHTLKRKSKASNCKKTKRVEREMENNIVSQNVLVLEDLGSEYLDQLLSLTSSSQDFF