Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50952.t1 | RHN65930.1 | 94.4 | 342 | 17 | 1 | 1 | 340 | 1 | 342 | 2.20E-168 | 601.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50952.t1 | Q5M947 | 36.2 | 116 | 59 | 4 | 224 | 326 | 159 | 272 | 1.4e-06 | 55.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50952.t1 | A0A396IKZ4 | 94.4 | 342 | 17 | 1 | 1 | 340 | 1 | 342 | 1.6e-168 | 601.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053401 | MS.gene50952 | 0.833014 | 6.80E-56 | -1.69E-46 |
| MS.gene058498 | MS.gene50952 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene50952 | 0.808288 | 3.33E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene50952 | 0.809222 | 2.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50952.t1 | AT5G48240 | 45.538 | 325 | 143 | 8 | 16 | 339 | 18 | 309 | 4.77e-79 | 244 |
| MS.gene50952.t1 | AT5G48240 | 42.391 | 368 | 139 | 8 | 16 | 339 | 18 | 356 | 2.82e-72 | 228 |
| MS.gene50952.t1 | AT5G48240 | 44.898 | 294 | 120 | 7 | 16 | 308 | 18 | 270 | 1.40e-60 | 196 |
Find 76 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCACACCTGCTAATTATT+TGG | 0.128361 | 3.3:+13562346 | MS.gene50952:CDS |
| CGCTGAAAAGAAGGCTTCTT+TGG | 0.194609 | 3.3:-13563741 | None:intergenic |
| TGTGGTGGCTTCATCACTTT+TGG | 0.308341 | 3.3:-13561578 | None:intergenic |
| CTTCATCGGAACTGCTATCT+TGG | 0.315922 | 3.3:-13564689 | None:intergenic |
| GTGAAGGTTGTAAAGCATTC+AGG | 0.319257 | 3.3:+13561933 | MS.gene50952:CDS |
| GAGCTGGGAAAGAGGAAGTT+TGG | 0.319454 | 3.3:+13561521 | MS.gene50952:CDS |
| AGCAGTTCCGATGAAGATTA+AGG | 0.322931 | 3.3:+13564696 | MS.gene50952:CDS |
| CTTCTTTATAATACTCTTGA+AGG | 0.329380 | 3.3:-13561960 | None:intergenic |
| GAGAGGATGAACAACCTTCT+TGG | 0.339326 | 3.3:+13564493 | MS.gene50952:CDS |
| CTTTGCATCCCTGTTCTTTG+AGG | 0.339480 | 3.3:-13562710 | None:intergenic |
| TCACTGAATTTAGTAATTCC+TGG | 0.358866 | 3.3:-13561914 | None:intergenic |
| GGCTGGACCCCTCAAAGAAC+AGG | 0.375162 | 3.3:+13562701 | MS.gene50952:CDS |
| TTCTGCTACCCCTTCATCTT+CGG | 0.376152 | 3.3:-13561807 | None:intergenic |
| TTTGCATCCCTGTTCTTTGA+GGG | 0.379386 | 3.3:-13562709 | None:intergenic |
| GCTGACAAGTTCGAGAATAA+AGG | 0.387185 | 3.3:+13564539 | MS.gene50952:CDS |
| CTTGTTACAGCTAGCAGAAA+AGG | 0.390626 | 3.3:+13562319 | MS.gene50952:intron |
| TCCCTTGTTTGTGCTTGCAT+TGG | 0.391353 | 3.3:-13564472 | None:intergenic |
| TGTAAAGTTTCTTCATTTGT+TGG | 0.412234 | 3.3:-13561625 | None:intergenic |
| CTTATAAGTGTCGCGACAAA+AGG | 0.425927 | 3.3:+13562386 | MS.gene50952:CDS |
| GGAGACAGAGCGCAAGATCA+AGG | 0.426021 | 3.3:+13562139 | MS.gene50952:CDS |
| GAGACAACTGCCCCTGCTAC+TGG | 0.429501 | 3.3:+13561689 | MS.gene50952:CDS |
| AGAGGATGAACAACCTTCTT+GGG | 0.435774 | 3.3:+13564494 | MS.gene50952:CDS |
| GCGTTAGGGAAGCCAGCTAT+TGG | 0.445925 | 3.3:+13563761 | MS.gene50952:CDS |
| TTCATCGGAACTGCTATCTT+GGG | 0.454720 | 3.3:-13564688 | None:intergenic |
| ATCACCTTTGCACCAATAGC+TGG | 0.456798 | 3.3:-13563773 | None:intergenic |
| ATGGAAGTGAGCTGGGAAAG+AGG | 0.457388 | 3.3:+13561513 | MS.gene50952:CDS |
| CAAGTTCGAGAATAAAGGAT+TGG | 0.462911 | 3.3:+13564544 | MS.gene50952:CDS |
| TTCAAAACCTTAATCTTCAT+CGG | 0.464287 | 3.3:-13564703 | None:intergenic |
| CTTCTAGTACTCCCAGTAGC+AGG | 0.475505 | 3.3:-13561701 | None:intergenic |
| GAGTGTTTCTGATGAGTTGT+TGG | 0.478230 | 3.3:+13561982 | MS.gene50952:CDS |
| CTTCCCTAACGCTGAAAAGA+AGG | 0.488467 | 3.3:-13563750 | None:intergenic |
| AAAGCTCAAGTTGCTCAGAA+AGG | 0.489370 | 3.3:+13562679 | MS.gene50952:CDS |
| TTCTTGTGATCTGACAATAC+TGG | 0.489621 | 3.3:-13562089 | None:intergenic |
| AAGCTCAAGTTGCTCAGAAA+GGG | 0.498953 | 3.3:+13562680 | MS.gene50952:CDS |
| AGCATATAATTATCGCGTAA+TGG | 0.502059 | 3.3:-13564519 | None:intergenic |
| AAGTTCGAGAATAAAGGATT+GGG | 0.504352 | 3.3:+13564545 | MS.gene50952:CDS |
| TATAGAAAAGCTCGCGGAAG+AGG | 0.510403 | 3.3:+13562118 | MS.gene50952:CDS |
| CTCAAAGAACAGGGATGCAA+AGG | 0.511691 | 3.3:+13562711 | MS.gene50952:CDS |
| GAAGATCTATCCGAAGATGA+AGG | 0.518592 | 3.3:+13561797 | MS.gene50952:CDS |
| TTGCATCCCTGTTCTTTGAG+GGG | 0.522520 | 3.3:-13562708 | None:intergenic |
| GAGGAGGATGAGATTCAGCC+AGG | 0.523349 | 3.3:+13561896 | MS.gene50952:CDS |
| TTGTTACAGCTAGCAGAAAA+GGG | 0.523614 | 3.3:+13562320 | MS.gene50952:intron |
| TTCTAGTACTCCCAGTAGCA+GGG | 0.533288 | 3.3:-13561700 | None:intergenic |
| AGACAACTGCCCCTGCTACT+GGG | 0.534405 | 3.3:+13561690 | MS.gene50952:CDS |
| GGCCAATGCAAGCACAAACA+AGG | 0.534686 | 3.3:+13564470 | MS.gene50952:intron |
| TGCGCGTCCAAATAATTAGC+AGG | 0.542869 | 3.3:-13562353 | None:intergenic |
| GAGACAGAGCGCAAGATCAA+GGG | 0.544740 | 3.3:+13562140 | MS.gene50952:CDS |
| GGTTGAGCATGGAAGTGAGC+TGG | 0.552552 | 3.3:+13561505 | MS.gene50952:CDS |
| TCAAGTTGCTCAGAAAGGGC+TGG | 0.553946 | 3.3:+13562684 | MS.gene50952:CDS |
| AAGATCTATCCGAAGATGAA+GGG | 0.556404 | 3.3:+13561798 | MS.gene50952:CDS |
| ACTTTCTTCTGTCCGTGTGG+TGG | 0.558848 | 3.3:-13561593 | None:intergenic |
| GAAACACAAGTGGTTGAGCA+TGG | 0.561474 | 3.3:+13561494 | MS.gene50952:CDS |
| CTCTGAGGATGAAGATGATG+AGG | 0.568128 | 3.3:+13561877 | MS.gene50952:CDS |
| TGGGAAAGAGGAAGTTTGGT+AGG | 0.575576 | 3.3:+13561525 | MS.gene50952:CDS |
| TCGCGTAATGGAGCCCAAGA+AGG | 0.580268 | 3.3:-13564507 | None:intergenic |
| TCAAAGAACAGGGATGCAAA+GGG | 0.580392 | 3.3:+13562712 | MS.gene50952:CDS |
| GGAATTACTAAATTCAGTGA+AGG | 0.581563 | 3.3:+13561917 | MS.gene50952:CDS |
| GTTGAGCATGGAAGTGAGCT+GGG | 0.585137 | 3.3:+13561506 | MS.gene50952:CDS |
| GAAGCCAGCTATTGGTGCAA+AGG | 0.585865 | 3.3:+13563769 | MS.gene50952:CDS |
| ATAAGTGTCGCGACAAAAGG+AGG | 0.590468 | 3.3:+13562389 | MS.gene50952:CDS |
| GAAGATGAAGGGGTAGCAGA+AGG | 0.603387 | 3.3:+13561809 | MS.gene50952:CDS |
| GCCAATGCAAGCACAAACAA+GGG | 0.604219 | 3.3:+13564471 | MS.gene50952:CDS |
| TGCAAGCACAAACAAGGGAG+AGG | 0.605005 | 3.3:+13564476 | MS.gene50952:CDS |
| TTAACTTTCTTCTGTCCGTG+TGG | 0.619849 | 3.3:-13561596 | None:intergenic |
| GTGGCATCTATGAAGACTAG+AGG | 0.647773 | 3.3:+13561725 | MS.gene50952:CDS |
| AGATCTATCCGAAGATGAAG+GGG | 0.651704 | 3.3:+13561799 | MS.gene50952:CDS |
| AGGAAGTTTGGTAGGAACCA+AGG | 0.652606 | 3.3:+13561533 | MS.gene50952:CDS |
| TAAGAAAGTTAATTTCTCTG+AGG | 0.655143 | 3.3:+13561862 | MS.gene50952:CDS |
| TCTAGTACTCCCAGTAGCAG+GGG | 0.660080 | 3.3:-13561699 | None:intergenic |
| TGAGGATGAAGATGATGAGG+AGG | 0.663150 | 3.3:+13561880 | MS.gene50952:CDS |
| TACTGGGAGTACTAGAAGTG+TGG | 0.666406 | 3.3:+13561706 | MS.gene50952:CDS |
| CATGGCTGAAGAAACACAAG+TGG | 0.666963 | 3.3:+13561484 | None:intergenic |
| GCTGGACCCCTCAAAGAACA+GGG | 0.672553 | 3.3:+13562702 | MS.gene50952:CDS |
| AAAGTGATGAAGCCACCACA+CGG | 0.690683 | 3.3:+13561581 | MS.gene50952:CDS |
| TCTTGTTATAGAAAAGCTCG+CGG | 0.691844 | 3.3:+13562112 | MS.gene50952:CDS |
| AGGTTGTAAAGCATTCAGGA+TGG | 0.710807 | 3.3:+13561937 | MS.gene50952:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTATCTAAAAAACAT+TGG | - | chr3.3:13563339-13563358 | None:intergenic | 10.0% |
| !! | TTATTAGAGAAATAAAAAAT+TGG | + | chr3.3:13562037-13562056 | MS.gene50952:intron | 10.0% |
| !!! | AAGTTTTCTATTTTAAAAAT+AGG | - | chr3.3:13563103-13563122 | None:intergenic | 10.0% |
| !! | AATAAATAGAGTAAATGATT+TGG | - | chr3.3:13563936-13563955 | None:intergenic | 15.0% |
| !! | CAACAATTAAATACTTAAAT+AGG | - | chr3.3:13563532-13563551 | None:intergenic | 15.0% |
| !! | GATTATCATTATTAAATTGA+AGG | + | chr3.3:13562629-13562648 | MS.gene50952:intron | 15.0% |
| !! | TTAATTGTTGAAAAATAAGA+GGG | + | chr3.3:13563542-13563561 | MS.gene50952:intron | 15.0% |
| !! | TTCTTTAATAATAAAACTTG+AGG | + | chr3.3:13563056-13563075 | MS.gene50952:intron | 15.0% |
| !! | TTTAATTGTTGAAAAATAAG+AGG | + | chr3.3:13563541-13563560 | MS.gene50952:intron | 15.0% |
| !!! | CTTTAAAAAAAATGAATTGA+AGG | - | chr3.3:13563255-13563274 | None:intergenic | 15.0% |
| !!! | TAACTTTAAAATAAACTTAC+TGG | - | chr3.3:13564582-13564601 | None:intergenic | 15.0% |
| !!! | TCAATTCATTTTTTTTAAAG+AGG | + | chr3.3:13563255-13563274 | MS.gene50952:intron | 15.0% |
| !!! | TTTCTTTTTCTTTTAAATAG+AGG | + | chr3.3:13562420-13562439 | MS.gene50952:intron | 15.0% |
| !! | AAACAAAATTTGCAAATGTT+AGG | - | chr3.3:13562573-13562592 | None:intergenic | 20.0% |
| !! | ACAAATTAGATAGTATGAAT+TGG | - | chr3.3:13563694-13563713 | None:intergenic | 20.0% |
| !! | CAAATTAGATAGTATGAATT+GGG | - | chr3.3:13563693-13563712 | None:intergenic | 20.0% |
| !! | TAATTGTTGAAAAATAAGAG+GGG | + | chr3.3:13563543-13563562 | MS.gene50952:intron | 20.0% |
| !! | TAGACCAAAATATTATCTAT+CGG | + | chr3.3:13562266-13562285 | MS.gene50952:intron | 20.0% |
| !! | TGCATATAAATTCAGAAAAT+CGG | - | chr3.3:13564065-13564084 | None:intergenic | 20.0% |
| !!! | ACAATAGAACAATTTTAAAG+TGG | - | chr3.3:13564222-13564241 | None:intergenic | 20.0% |
| !!! | ACATAAATTTTAGTGCTAAT+TGG | - | chr3.3:13562230-13562249 | None:intergenic | 20.0% |
| !!! | CATAAATTTTAGTGCTAATT+GGG | - | chr3.3:13562229-13562248 | None:intergenic | 20.0% |
| !!! | CATTCAACTTATATACATTT+TGG | - | chr3.3:13563906-13563925 | None:intergenic | 20.0% |
| !!! | TCTGTTGATAATAACTAATT+AGG | + | chr3.3:13563842-13563861 | MS.gene50952:intron | 20.0% |
| !!! | TCTTTCATTTTTCGAATAAA+GGG | - | chr3.3:13563993-13564012 | None:intergenic | 20.0% |
| !!! | TTCAGTTTATCTTTTATACA+GGG | + | chr3.3:13562855-13562874 | MS.gene50952:intron | 20.0% |
| !!! | TTCTTTCATTTTTCGAATAA+AGG | - | chr3.3:13563994-13564013 | None:intergenic | 20.0% |
| !!! | TTTCAGTTTATCTTTTATAC+AGG | + | chr3.3:13562854-13562873 | MS.gene50952:intron | 20.0% |
| ! | AAAATCAGTGTTATCAATAG+AGG | - | chr3.3:13563431-13563450 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGGAATCTCATT+TGG | + | chr3.3:13562821-13562840 | MS.gene50952:intron | 25.0% |
| ! | AAATAGAAAACTTAAGAGTC+AGG | + | chr3.3:13563110-13563129 | MS.gene50952:intron | 25.0% |
| ! | AAGAAAAAGGAATCTCATTT+GGG | + | chr3.3:13562822-13562841 | MS.gene50952:intron | 25.0% |
| ! | ACCTCTAAATTAATGTGATA+TGG | + | chr3.3:13564154-13564173 | MS.gene50952:intron | 25.0% |
| ! | ACGATGTGTTAAAAAAAATG+TGG | - | chr3.3:13563200-13563219 | None:intergenic | 25.0% |
| ! | AGACCAAAATATTATCTATC+GGG | + | chr3.3:13562267-13562286 | MS.gene50952:intron | 25.0% |
| ! | ATTATCAAATTGCTTGGATT+TGG | + | chr3.3:13564440-13564459 | MS.gene50952:intron | 25.0% |
| ! | CTTCTTTATAATACTCTTGA+AGG | - | chr3.3:13561963-13561982 | None:intergenic | 25.0% |
| ! | GTTTACTGAGGTTTAAAAAA+AGG | - | chr3.3:13563300-13563319 | None:intergenic | 25.0% |
| ! | TAAACTTGAACAACTCTATA+GGG | + | chr3.3:13562065-13562084 | MS.gene50952:intron | 25.0% |
| ! | TAAGAAAGTTAATTTCTCTG+AGG | + | chr3.3:13561862-13561881 | MS.gene50952:CDS | 25.0% |
| ! | TACGTATTAAGGTGATTATA+GGG | - | chr3.3:13563147-13563166 | None:intergenic | 25.0% |
| ! | TCCATATCACATTAATTTAG+AGG | - | chr3.3:13564158-13564177 | None:intergenic | 25.0% |
| ! | TGTAAAGTTTCTTCATTTGT+TGG | - | chr3.3:13561628-13561647 | None:intergenic | 25.0% |
| ! | TTACGTATTAAGGTGATTAT+AGG | - | chr3.3:13563148-13563167 | None:intergenic | 25.0% |
| !! | ACTTTGAACATGATGTTTTT+AGG | + | chr3.3:13564273-13564292 | MS.gene50952:intron | 25.0% |
| !! | ATCCAAGCAATTTGATAATT+AGG | - | chr3.3:13564439-13564458 | None:intergenic | 25.0% |
| !! | GTTTCTTACTTGACTTTTTA+CGG | - | chr3.3:13561559-13561578 | None:intergenic | 25.0% |
| !! | TCCAAGCAATTTGATAATTA+GGG | - | chr3.3:13564438-13564457 | None:intergenic | 25.0% |
| !! | TTACCCGATAGATAATATTT+TGG | - | chr3.3:13562273-13562292 | None:intergenic | 25.0% |
| !!! | ATATGATGTTCTAAGAATGA+GGG | + | chr3.3:13563488-13563507 | MS.gene50952:intron | 25.0% |
| !!! | ATATTTTGGTCTACGATAAT+TGG | - | chr3.3:13562259-13562278 | None:intergenic | 25.0% |
| !!! | GCAAACATTTTGAGTATATT+AGG | - | chr3.3:13563671-13563690 | None:intergenic | 25.0% |
| AAGTTCGAGAATAAAGGATT+GGG | + | chr3.3:13564545-13564564 | MS.gene50952:CDS | 30.0% | |
| ACCACAAAAATAGAACAGAT+AGG | - | chr3.3:13563647-13563666 | None:intergenic | 30.0% | |
| ACCATCTCAAGTAAAGAAAA+AGG | + | chr3.3:13562809-13562828 | MS.gene50952:intron | 30.0% | |
| AGAAAAAGGAATCTCATTTG+GGG | + | chr3.3:13562823-13562842 | MS.gene50952:intron | 30.0% | |
| AGCATATAATTATCGCGTAA+TGG | - | chr3.3:13564522-13564541 | None:intergenic | 30.0% | |
| CTAAACTTGAACAACTCTAT+AGG | + | chr3.3:13562064-13562083 | MS.gene50952:intron | 30.0% | |
| CTGCATAATAAAGTTTACTG+AGG | - | chr3.3:13563312-13563331 | None:intergenic | 30.0% | |
| CTTAATTCTGTTGAAGAACA+AGG | + | chr3.3:13563876-13563895 | MS.gene50952:intron | 30.0% | |
| GCAACAGTTAAATAAGTAAG+AGG | - | chr3.3:13562487-13562506 | None:intergenic | 30.0% | |
| GGAATTACTAAATTCAGTGA+AGG | + | chr3.3:13561917-13561936 | MS.gene50952:CDS | 30.0% | |
| TAGACTTGAGCATTTACTTA+CGG | + | chr3.3:13563956-13563975 | MS.gene50952:intron | 30.0% | |
| TCACTGAATTTAGTAATTCC+TGG | - | chr3.3:13561917-13561936 | None:intergenic | 30.0% | |
| TCCCTAATTATCAAATTGCT+TGG | + | chr3.3:13564434-13564453 | MS.gene50952:intron | 30.0% | |
| TGAGAGAAGTTTACGTATTA+AGG | - | chr3.3:13563158-13563177 | None:intergenic | 30.0% | |
| ! | GGGAAATTTAACAACTGTTT+TGG | + | chr3.3:13562875-13562894 | MS.gene50952:intron | 30.0% |
| ! | TCCTTTTTCTTTACTTGAGA+TGG | - | chr3.3:13562813-13562832 | None:intergenic | 30.0% |
| !! | GATATGATGTTCTAAGAATG+AGG | + | chr3.3:13563487-13563506 | MS.gene50952:intron | 30.0% |
| !! | TATGATGTTCTAAGAATGAG+GGG | + | chr3.3:13563489-13563508 | MS.gene50952:intron | 30.0% |
| !!! | ACCTATCTGTTCTATTTTTG+TGG | + | chr3.3:13563643-13563662 | MS.gene50952:intron | 30.0% |
| AAAAAAAATGTGGCAGAGCA+TGG | - | chr3.3:13563190-13563209 | None:intergenic | 35.0% | |
| AAATAGAAGACGTAGCATAG+TGG | - | chr3.3:13563371-13563390 | None:intergenic | 35.0% | |
| AAGATCTATCCGAAGATGAA+GGG | + | chr3.3:13561798-13561817 | MS.gene50952:CDS | 35.0% | |
| ACAAAGAGAGGAGGAAAATT+TGG | - | chr3.3:13562599-13562618 | None:intergenic | 35.0% | |
| ATAGTGGTTGTAGCATCTAT+AGG | + | chr3.3:13563019-13563038 | MS.gene50952:intron | 35.0% | |
| ATGAAACCTAAAACTCTGAC+AGG | - | chr3.3:13563607-13563626 | None:intergenic | 35.0% | |
| CAAGTTCGAGAATAAAGGAT+TGG | + | chr3.3:13564544-13564563 | MS.gene50952:CDS | 35.0% | |
| CTACTTCTGATTTCTTTCAG+TGG | + | chr3.3:13562519-13562538 | MS.gene50952:intron | 35.0% | |
| CTGTCAGTGTTATCAAATAG+TGG | + | chr3.3:13562920-13562939 | MS.gene50952:intron | 35.0% | |
| GACAAAAAAGGAAAAGCTGA+TGG | + | chr3.3:13562166-13562185 | MS.gene50952:CDS | 35.0% | |
| GTGTTATCAATAGAGGATAG+TGG | - | chr3.3:13563424-13563443 | None:intergenic | 35.0% | |
| GTTCTTCAACAGAATTAAGC+AGG | - | chr3.3:13563875-13563894 | None:intergenic | 35.0% | |
| TAGTGGTTGTAGCATCTATA+GGG | + | chr3.3:13563020-13563039 | MS.gene50952:intron | 35.0% | |
| TATAGATGCTACAACCACTA+TGG | - | chr3.3:13563020-13563039 | None:intergenic | 35.0% | |
| TCACAAACAAATCTTCAGCA+TGG | - | chr3.3:13563469-13563488 | None:intergenic | 35.0% | |
| TGAAACCTAAAACTCTGACA+GGG | - | chr3.3:13563606-13563625 | None:intergenic | 35.0% | |
| TGTCACACCTGCTAATTATT+TGG | + | chr3.3:13562346-13562365 | MS.gene50952:CDS | 35.0% | |
| TGTTCAAAGTTCATCCAGTT+TGG | - | chr3.3:13564263-13564282 | None:intergenic | 35.0% | |
| TGTTGAAAAATAAGAGGGGT+CGG | + | chr3.3:13563547-13563566 | MS.gene50952:intron | 35.0% | |
| TTCTTGTGATCTGACAATAC+TGG | - | chr3.3:13562092-13562111 | None:intergenic | 35.0% | |
| TTGTTACAGCTAGCAGAAAA+GGG | + | chr3.3:13562320-13562339 | MS.gene50952:intron | 35.0% | |
| TTTAACTGTTGCTGTGAACA+TGG | + | chr3.3:13562495-13562514 | MS.gene50952:intron | 35.0% | |
| TTTCACCAAAAATAAGCACG+TGG | + | chr3.3:13561757-13561776 | MS.gene50952:CDS | 35.0% | |
| ! | TCGTTCAGTCAGTTTTTCAT+TGG | + | chr3.3:13563811-13563830 | MS.gene50952:intron | 35.0% |
| ! | TCTTGTTATAGAAAAGCTCG+CGG | + | chr3.3:13562112-13562131 | MS.gene50952:CDS | 35.0% |
| ! | TTTGATAATTAGGGACACGA+TGG | - | chr3.3:13564429-13564448 | None:intergenic | 35.0% |
| !! | GTTTTATACACACTTGTTGC+AGG | + | chr3.3:13562651-13562670 | MS.gene50952:intron | 35.0% |
| !! | TAGAGGATAGTGGAAAATAG+TGG | - | chr3.3:13563414-13563433 | None:intergenic | 35.0% |
| !! | TTTTAAAGAGGCAGCATGTT+TGG | + | chr3.3:13563267-13563286 | MS.gene50952:intron | 35.0% |
| AACAGAATTAAGCAGGACTC+GGG | - | chr3.3:13563868-13563887 | None:intergenic | 40.0% | |
| AGAGGATGAACAACCTTCTT+GGG | + | chr3.3:13564494-13564513 | MS.gene50952:CDS | 40.0% | |
| AGATCTATCCGAAGATGAAG+GGG | + | chr3.3:13561799-13561818 | MS.gene50952:CDS | 40.0% | |
| AGCATTTACTTACGGACACT+TGG | + | chr3.3:13563964-13563983 | MS.gene50952:intron | 40.0% | |
| CAACAGAATTAAGCAGGACT+CGG | - | chr3.3:13563869-13563888 | None:intergenic | 40.0% | |
| CTTGTTACAGCTAGCAGAAA+AGG | + | chr3.3:13562319-13562338 | MS.gene50952:intron | 40.0% | |
| GAAGATCTATCCGAAGATGA+AGG | + | chr3.3:13561797-13561816 | MS.gene50952:CDS | 40.0% | |
| GATCAAGGGAGAGACAAAAA+AGG | + | chr3.3:13562154-13562173 | MS.gene50952:CDS | 40.0% | |
| GCATTTACTTACGGACACTT+GGG | + | chr3.3:13563965-13563984 | MS.gene50952:intron | 40.0% | |
| GCTGACAAGTTCGAGAATAA+AGG | + | chr3.3:13564539-13564558 | MS.gene50952:CDS | 40.0% | |
| GCTTAGACAAATTGCCAAAC+TGG | + | chr3.3:13564246-13564265 | MS.gene50952:intron | 40.0% | |
| GTGGAATAGCATAGCATTGT+AGG | - | chr3.3:13563395-13563414 | None:intergenic | 40.0% | |
| GTTGAAAAATAAGAGGGGTC+GGG | + | chr3.3:13563548-13563567 | MS.gene50952:intron | 40.0% | |
| TCAAAGAACAGGGATGCAAA+GGG | + | chr3.3:13562712-13562731 | MS.gene50952:CDS | 40.0% | |
| TCATACAAAGCGACAAAGAG+AGG | - | chr3.3:13562611-13562630 | None:intergenic | 40.0% | |
| TGAGCAACATGATGAGTACA+AGG | - | chr3.3:13564627-13564646 | None:intergenic | 40.0% | |
| TTAACTTTCTTCTGTCCGTG+TGG | - | chr3.3:13561599-13561618 | None:intergenic | 40.0% | |
| TTCATCGGAACTGCTATCTT+GGG | - | chr3.3:13564691-13564710 | None:intergenic | 40.0% | |
| TTGCTTGGATTTGGATATGC+AGG | + | chr3.3:13564449-13564468 | MS.gene50952:intron | 40.0% | |
| TTTGCATCCCTGTTCTTTGA+GGG | - | chr3.3:13562712-13562731 | None:intergenic | 40.0% | |
| ! | AAAGCTCAAGTTGCTCAGAA+AGG | + | chr3.3:13562679-13562698 | MS.gene50952:CDS | 40.0% |
| ! | AAGCCTTCTTTTCAGCGTTA+GGG | + | chr3.3:13563747-13563766 | MS.gene50952:CDS | 40.0% |
| ! | AAGCTCAAGTTGCTCAGAAA+GGG | + | chr3.3:13562680-13562699 | MS.gene50952:CDS | 40.0% |
| ! | AGGTTGTAAAGCATTCAGGA+TGG | + | chr3.3:13561937-13561956 | MS.gene50952:CDS | 40.0% |
| ! | CTTATAAGTGTCGCGACAAA+AGG | + | chr3.3:13562386-13562405 | MS.gene50952:CDS | 40.0% |
| ! | GAGTGTTTCTGATGAGTTGT+TGG | + | chr3.3:13561982-13562001 | MS.gene50952:CDS | 40.0% |
| ! | GTGAAGGTTGTAAAGCATTC+AGG | + | chr3.3:13561933-13561952 | MS.gene50952:CDS | 40.0% |
| ! | TACTTGACTTTTTACGGCCT+TGG | - | chr3.3:13561553-13561572 | None:intergenic | 40.0% |
| ! | TGATGAGTTGTTGGTAAGCT+AGG | + | chr3.3:13561991-13562010 | MS.gene50952:intron | 40.0% |
| ! | TGGTTCTATTTGGAGAAGCA+TGG | - | chr3.3:13563582-13563601 | None:intergenic | 40.0% |
| !! | TTCCTCCACGTGCTTATTTT+TGG | - | chr3.3:13561765-13561784 | None:intergenic | 40.0% |
| AAAGTGATGAAGCCACCACA+CGG | + | chr3.3:13561581-13561600 | MS.gene50952:CDS | 45.0% | |
| ACCTAAAACTCTGACAGGGA+TGG | - | chr3.3:13563602-13563621 | None:intergenic | 45.0% | |
| AGGAAGTTTGGTAGGAACCA+AGG | + | chr3.3:13561533-13561552 | MS.gene50952:CDS | 45.0% | |
| ATACAACCTCTTTGGGCCTT+TGG | + | chr3.3:13562994-13563013 | MS.gene50952:intron | 45.0% | |
| ATCACCTTTGCACCAATAGC+TGG | - | chr3.3:13563776-13563795 | None:intergenic | 45.0% | |
| ATCCTCCTCACTGGAAATAG+AGG | - | chr3.3:13563229-13563248 | None:intergenic | 45.0% | |
| CACCAAAAATAAGCACGTGG+AGG | + | chr3.3:13561760-13561779 | MS.gene50952:CDS | 45.0% | |
| CATCATGTTGCTCAACTGCA+GGG | + | chr3.3:13564633-13564652 | MS.gene50952:intron | 45.0% | |
| CATGATGAGTACAAGGTAGC+TGG | - | chr3.3:13564620-13564639 | None:intergenic | 45.0% | |
| CGCTGAAAAGAAGGCTTCTT+TGG | - | chr3.3:13563744-13563763 | None:intergenic | 45.0% | |
| CTCAAAGAACAGGGATGCAA+AGG | + | chr3.3:13562711-13562730 | MS.gene50952:CDS | 45.0% | |
| CTTCATCGGAACTGCTATCT+TGG | - | chr3.3:13564692-13564711 | None:intergenic | 45.0% | |
| CTTCCCTAACGCTGAAAAGA+AGG | - | chr3.3:13563753-13563772 | None:intergenic | 45.0% | |
| CTTTGCATCCCTGTTCTTTG+AGG | - | chr3.3:13562713-13562732 | None:intergenic | 45.0% | |
| GAAACACAAGTGGTTGAGCA+TGG | + | chr3.3:13561494-13561513 | MS.gene50952:CDS | 45.0% | |
| GAGAGGATGAACAACCTTCT+TGG | + | chr3.3:13564493-13564512 | MS.gene50952:CDS | 45.0% | |
| GAGCTGCATACAACCTCTTT+GGG | + | chr3.3:13562987-13563006 | MS.gene50952:intron | 45.0% | |
| GCCAATGCAAGCACAAACAA+GGG | + | chr3.3:13564471-13564490 | MS.gene50952:CDS | 45.0% | |
| GTGGCATCTATGAAGACTAG+AGG | + | chr3.3:13561725-13561744 | MS.gene50952:CDS | 45.0% | |
| TACAAAGCGACAAAGAGAGG+AGG | - | chr3.3:13562608-13562627 | None:intergenic | 45.0% | |
| TATAGAAAAGCTCGCGGAAG+AGG | + | chr3.3:13562118-13562137 | MS.gene50952:CDS | 45.0% | |
| TATCTATCGGGTAAGCAGTC+TGG | + | chr3.3:13562279-13562298 | MS.gene50952:intron | 45.0% | |
| TCATCATGTTGCTCAACTGC+AGG | + | chr3.3:13564632-13564651 | MS.gene50952:intron | 45.0% | |
| TGAGCTGCATACAACCTCTT+TGG | + | chr3.3:13562986-13563005 | MS.gene50952:intron | 45.0% | |
| TGAGGATGAAGATGATGAGG+AGG | + | chr3.3:13561880-13561899 | MS.gene50952:CDS | 45.0% | |
| TGCGCGTCCAAATAATTAGC+AGG | - | chr3.3:13562356-13562375 | None:intergenic | 45.0% | |
| TGGGAAAGAGGAAGTTTGGT+AGG | + | chr3.3:13561525-13561544 | MS.gene50952:CDS | 45.0% | |
| TTCTAGTACTCCCAGTAGCA+GGG | - | chr3.3:13561703-13561722 | None:intergenic | 45.0% | |
| TTCTGCTACCCCTTCATCTT+CGG | - | chr3.3:13561810-13561829 | None:intergenic | 45.0% | |
| TTGCATCCCTGTTCTTTGAG+GGG | - | chr3.3:13562711-13562730 | None:intergenic | 45.0% | |
| ! | ACCATCCCTGTCAGAGTTTT+AGG | + | chr3.3:13563598-13563617 | MS.gene50952:intron | 45.0% |
| ! | ATAAGTGTCGCGACAAAAGG+AGG | + | chr3.3:13562389-13562408 | MS.gene50952:CDS | 45.0% |
| ! | CTCTGAGGATGAAGATGATG+AGG | + | chr3.3:13561877-13561896 | MS.gene50952:CDS | 45.0% |
| ! | CTGACAGGGATGGTTCTATT+TGG | - | chr3.3:13563592-13563611 | None:intergenic | 45.0% |
| ! | GAAGCCTTCTTTTCAGCGTT+AGG | + | chr3.3:13563746-13563765 | MS.gene50952:CDS | 45.0% |
| ! | TCCCTTGTTTGTGCTTGCAT+TGG | - | chr3.3:13564475-13564494 | None:intergenic | 45.0% |
| ! | TGTGGTGGCTTCATCACTTT+TGG | - | chr3.3:13561581-13561600 | None:intergenic | 45.0% |
| !! | TACTGGGAGTACTAGAAGTG+TGG | + | chr3.3:13561706-13561725 | MS.gene50952:CDS | 45.0% |
| !!! | ATATTATTTTCTTTTTTATT+AGG | + | chr3.3:13564192-13564211 | MS.gene50952:intron | 5.0% |
| AAATAAGAGGGGTCGGGACT+TGG | + | chr3.3:13563554-13563573 | MS.gene50952:intron | 50.0% | |
| AATAAGAGGGGTCGGGACTT+GGG | + | chr3.3:13563555-13563574 | MS.gene50952:intron | 50.0% | |
| ACTTTCTTCTGTCCGTGTGG+TGG | - | chr3.3:13561596-13561615 | None:intergenic | 50.0% | |
| ATGGAAGTGAGCTGGGAAAG+AGG | + | chr3.3:13561513-13561532 | MS.gene50952:CDS | 50.0% | |
| CTCACTGGAAATAGAGGAGG+AGG | - | chr3.3:13563223-13563242 | None:intergenic | 50.0% | |
| CTCCTCACTGGAAATAGAGG+AGG | - | chr3.3:13563226-13563245 | None:intergenic | 50.0% | |
| CTCCTCCTCTATTTCCAGTG+AGG | + | chr3.3:13563221-13563240 | MS.gene50952:intron | 50.0% | |
| CTCCTCTATTTCCAGTGAGG+AGG | + | chr3.3:13563224-13563243 | MS.gene50952:intron | 50.0% | |
| CTTCTAGTACTCCCAGTAGC+AGG | - | chr3.3:13561704-13561723 | None:intergenic | 50.0% | |
| GAAGATGAAGGGGTAGCAGA+AGG | + | chr3.3:13561809-13561828 | MS.gene50952:CDS | 50.0% | |
| GAAGCCAGCTATTGGTGCAA+AGG | + | chr3.3:13563769-13563788 | MS.gene50952:CDS | 50.0% | |
| GAGACAGAGCGCAAGATCAA+GGG | + | chr3.3:13562140-13562159 | MS.gene50952:CDS | 50.0% | |
| GAGCTGGGAAAGAGGAAGTT+TGG | + | chr3.3:13561521-13561540 | MS.gene50952:CDS | 50.0% | |
| GCTACAACCACTATGGCCAA+AGG | - | chr3.3:13563013-13563032 | None:intergenic | 50.0% | |
| GGCCAATGCAAGCACAAACA+AGG | + | chr3.3:13564470-13564489 | MS.gene50952:intron | 50.0% | |
| GTTGAGCATGGAAGTGAGCT+GGG | + | chr3.3:13561506-13561525 | MS.gene50952:CDS | 50.0% | |
| TCTAGTACTCCCAGTAGCAG+GGG | - | chr3.3:13561702-13561721 | None:intergenic | 50.0% | |
| TGAAGGATCATCCTCCTCAC+TGG | - | chr3.3:13563238-13563257 | None:intergenic | 50.0% | |
| TGCAAGCACAAACAAGGGAG+AGG | + | chr3.3:13564476-13564495 | MS.gene50952:CDS | 50.0% | |
| ! | TCAAGTTGCTCAGAAAGGGC+TGG | + | chr3.3:13562684-13562703 | MS.gene50952:CDS | 50.0% |
| AGACAACTGCCCCTGCTACT+GGG | + | chr3.3:13561690-13561709 | MS.gene50952:CDS | 55.0% | |
| CTATGGCCAAAGGCCCAAAG+AGG | - | chr3.3:13563003-13563022 | None:intergenic | 55.0% | |
| CTTTGGGCCTTTGGCCATAG+TGG | + | chr3.3:13563003-13563022 | MS.gene50952:intron | 55.0% | |
| GAGGAGGATGAGATTCAGCC+AGG | + | chr3.3:13561896-13561915 | MS.gene50952:CDS | 55.0% | |
| GCGTTAGGGAAGCCAGCTAT+TGG | + | chr3.3:13563761-13563780 | MS.gene50952:CDS | 55.0% | |
| GCTGGACCCCTCAAAGAACA+GGG | + | chr3.3:13562702-13562721 | MS.gene50952:CDS | 55.0% | |
| GGAGACAGAGCGCAAGATCA+AGG | + | chr3.3:13562139-13562158 | MS.gene50952:CDS | 55.0% | |
| GGTTGAGCATGGAAGTGAGC+TGG | + | chr3.3:13561505-13561524 | MS.gene50952:CDS | 55.0% | |
| ! | TCGCGTAATGGAGCCCAAGA+AGG | - | chr3.3:13564510-13564529 | None:intergenic | 55.0% |
| GAGACAACTGCCCCTGCTAC+TGG | + | chr3.3:13561689-13561708 | MS.gene50952:CDS | 60.0% | |
| GGCTGGACCCCTCAAAGAAC+AGG | + | chr3.3:13562701-13562720 | MS.gene50952:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 13561485 | 13564716 | 13561485 | ID=MS.gene50952 |
| chr3.3 | mRNA | 13561485 | 13564716 | 13561485 | ID=MS.gene50952.t1;Parent=MS.gene50952 |
| chr3.3 | exon | 13561485 | 13562003 | 13561485 | ID=MS.gene50952.t1.exon1;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13561485 | 13562003 | 13561485 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| chr3.3 | exon | 13562086 | 13562187 | 13562086 | ID=MS.gene50952.t1.exon2;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13562086 | 13562187 | 13562086 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| chr3.3 | exon | 13562329 | 13562410 | 13562329 | ID=MS.gene50952.t1.exon3;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13562329 | 13562410 | 13562329 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| chr3.3 | exon | 13562539 | 13562558 | 13562539 | ID=MS.gene50952.t1.exon4;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13562539 | 13562558 | 13562539 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| chr3.3 | exon | 13562673 | 13562733 | 13562673 | ID=MS.gene50952.t1.exon5;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13562673 | 13562733 | 13562673 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| chr3.3 | exon | 13563726 | 13563790 | 13563726 | ID=MS.gene50952.t1.exon6;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13563726 | 13563790 | 13563726 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| chr3.3 | exon | 13564471 | 13564581 | 13564471 | ID=MS.gene50952.t1.exon7;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13564471 | 13564581 | 13564471 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| chr3.3 | exon | 13564654 | 13564716 | 13564654 | ID=MS.gene50952.t1.exon8;Parent=MS.gene50952.t1 |
| chr3.3 | CDS | 13564654 | 13564716 | 13564654 | ID=cds.MS.gene50952.t1;Parent=MS.gene50952.t1 |
| Gene Sequence |
| Protein sequence |
