Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053401.t1 | XP_003590036.1 | 95 | 600 | 30 | 0 | 3 | 602 | 1 | 600 | 0.00E+00 | 1181.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053401.t1 | Q96524 | 61.7 | 600 | 203 | 6 | 5 | 598 | 6 | 584 | 4.8e-212 | 738.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053401.t1 | G7I4R1 | 95.0 | 600 | 30 | 0 | 3 | 602 | 1 | 600 | 0.0e+00 | 1181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050702 | MS.gene053401 | -0.829818 | 4.16E-55 | -1.69E-46 |
| MS.gene051678 | MS.gene053401 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene052224 | MS.gene053401 | -0.898274 | 6.23E-77 | -1.69E-46 |
| MS.gene053294 | MS.gene053401 | 0.834827 | 2.39E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene053509 | 0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene05548 | 0.825537 | 4.44E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene055555 | 0.842079 | 3.22E-58 | -1.69E-46 |
| MS.gene053401 | MS.gene056091 | 0.815854 | 7.47E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene061735 | 0.846371 | 2.26E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene061900 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene064124 | 0.800885 | 1.17E-48 | -1.69E-46 |
| MS.gene053401 | MS.gene065180 | 0.818487 | 1.91E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene068135 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene053401 | MS.gene068159 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene068565 | 0.82508 | 5.70E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene069369 | 0.802348 | 5.85E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene070271 | 0.882367 | 1.11E-70 | -1.69E-46 |
| MS.gene053401 | MS.gene072213 | 0.875964 | 2.03E-68 | -1.69E-46 |
| MS.gene053401 | MS.gene072280 | 0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene072299 | 0.820806 | 5.65E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene073300 | 0.8477 | 9.80E-60 | -1.69E-46 |
| MS.gene053401 | MS.gene073301 | 0.846967 | 1.56E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene073637 | 0.805277 | 1.44E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene073665 | 0.805598 | 1.24E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene09850 | 0.852506 | 4.42E-61 | -1.69E-46 |
| MS.gene053401 | MS.gene09931 | 0.854112 | 1.53E-61 | -1.69E-46 |
| MS.gene053401 | MS.gene20747 | -0.819764 | 9.78E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene22195 | 0.803275 | 3.77E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene22556 | 0.843093 | 1.73E-58 | -1.69E-46 |
| MS.gene053401 | MS.gene22755 | -0.801793 | 7.62E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene23262 | 0.904672 | 9.61E-80 | -1.69E-46 |
| MS.gene053401 | MS.gene23264 | 0.927221 | 1.59E-91 | -1.69E-46 |
| MS.gene053401 | MS.gene24281 | 0.822417 | 2.40E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene25696 | 0.814495 | 1.50E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene26560 | 0.844198 | 8.77E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene26962 | 0.84906 | 4.12E-60 | -1.69E-46 |
| MS.gene053401 | MS.gene27314 | 0.838977 | 2.09E-57 | -1.69E-46 |
| MS.gene053401 | MS.gene29492 | 0.827024 | 1.97E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene29612 | 0.805221 | 1.48E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene29697 | 0.866911 | 2.02E-65 | -1.69E-46 |
| MS.gene053401 | MS.gene31670 | -0.818625 | 1.78E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene31856 | 0.808173 | 3.53E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene32551 | 0.843003 | 1.83E-58 | -1.69E-46 |
| MS.gene053401 | MS.gene32552 | 0.832991 | 6.89E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene32708 | 0.81185 | 5.70E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene32838 | 0.856983 | 2.22E-62 | -1.69E-46 |
| MS.gene053401 | MS.gene33664 | -0.827322 | 1.67E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene36625 | 0.850815 | 1.33E-60 | -1.69E-46 |
| MS.gene053401 | MS.gene36740 | 0.847508 | 1.11E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene37446 | 0.889615 | 2.07E-73 | -1.69E-46 |
| MS.gene053401 | MS.gene39213 | 0.825958 | 3.53E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene39214 | 0.860676 | 1.75E-63 | -1.69E-46 |
| MS.gene053401 | MS.gene39217 | 0.867816 | 1.04E-65 | -1.69E-46 |
| MS.gene053401 | MS.gene40908 | 0.845004 | 5.32E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene42057 | 0.833555 | 4.99E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene42671 | 0.824059 | 9.91E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene43176 | 0.80737 | 5.22E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene44077 | 0.838625 | 2.57E-57 | -1.69E-46 |
| MS.gene053401 | MS.gene45192 | -0.83168 | 1.45E-55 | -1.69E-46 |
| MS.gene053401 | MS.gene45593 | 0.859975 | 2.85E-63 | -1.69E-46 |
| MS.gene053401 | MS.gene45595 | 0.855939 | 4.50E-62 | -1.69E-46 |
| MS.gene053401 | MS.gene45666 | 0.900193 | 9.36E-78 | -1.69E-46 |
| MS.gene053401 | MS.gene45670 | 0.812193 | 4.80E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene46390 | 0.826924 | 2.08E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene46499 | 0.869607 | 2.73E-66 | -1.69E-46 |
| MS.gene053401 | MS.gene47692 | 0.832929 | 7.14E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene48376 | 0.802059 | 6.71E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene50084 | 0.823901 | 1.08E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene50085 | 0.910349 | 2.07E-82 | -1.69E-46 |
| MS.gene053401 | MS.gene50952 | 0.833014 | 6.80E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene51085 | 0.85348 | 2.32E-61 | -1.69E-46 |
| MS.gene053401 | MS.gene51145 | 0.847885 | 8.71E-60 | -1.69E-46 |
| MS.gene053401 | MS.gene51560 | 0.81405 | 1.88E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene52404 | 0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene54974 | 0.821089 | 4.86E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene56536 | -0.860186 | 2.46E-63 | -1.69E-46 |
| MS.gene053401 | MS.gene56670 | 0.833513 | 5.11E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene56714 | -0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene57681 | 0.819276 | 1.26E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene58413 | 0.815711 | 8.04E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene58556 | -0.817421 | 3.33E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene58719 | 0.808541 | 2.94E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene59440 | -0.875587 | 2.74E-68 | -1.69E-46 |
| MS.gene053401 | MS.gene59505 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene053401 | MS.gene60216 | 0.828163 | 1.05E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene60261 | 0.80218 | 6.34E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene60384 | 0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene61254 | 0.824866 | 6.40E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene62677 | 0.807275 | 5.47E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene64517 | 0.839673 | 1.38E-57 | -1.69E-46 |
| MS.gene053401 | MS.gene64674 | 0.822134 | 2.79E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene64738 | -0.894908 | 1.58E-75 | -1.69E-46 |
| MS.gene053401 | MS.gene65495 | 0.974092 | 1.50E-137 | -1.69E-46 |
| MS.gene053401 | MS.gene65946 | 0.986255 | 3.52E-166 | -1.69E-46 |
| MS.gene053401 | MS.gene67485 | 0.832463 | 9.32E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene68034 | -0.826619 | 2.46E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene68215 | 0.806726 | 7.15E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene71308 | 0.818264 | 2.15E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene72379 | 0.816728 | 4.76E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene72598 | 0.840768 | 7.13E-58 | -1.69E-46 |
| MS.gene053401 | MS.gene76100 | 0.866106 | 3.63E-65 | -1.69E-46 |
| MS.gene053401 | MS.gene78232 | 0.818151 | 2.28E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene79881 | 0.840132 | 1.05E-57 | -1.69E-46 |
| MS.gene053401 | MS.gene80177 | 0.823508 | 1.33E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene80668 | 0.827883 | 1.22E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene80795 | 0.826502 | 2.62E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene81017 | 0.830366 | 3.06E-55 | -1.69E-46 |
| MS.gene053401 | MS.gene83326 | 0.807412 | 5.12E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene92970 | 0.847377 | 1.20E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene93155 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene93354 | 0.816407 | 5.62E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene94206 | 0.848598 | 5.54E-60 | -1.69E-46 |
| MS.gene053401 | MS.gene94908 | 0.814427 | 1.55E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene96338 | 0.867209 | 1.62E-65 | -1.69E-46 |
| MS.gene053401 | MS.gene96790 | -0.861586 | 9.24E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053401.t1 | MTR_1g043190 | 95.000 | 600 | 30 | 0 | 3 | 602 | 1 | 600 | 0.0 | 1169 |
| MS.gene053401.t1 | MTR_1g076190 | 76.198 | 605 | 137 | 6 | 1 | 602 | 1 | 601 | 0.0 | 939 |
| MS.gene053401.t1 | MTR_1g076190 | 76.198 | 605 | 137 | 6 | 1 | 602 | 1 | 601 | 0.0 | 939 |
| MS.gene053401.t1 | MTR_5g063920 | 52.836 | 617 | 261 | 6 | 2 | 601 | 5 | 608 | 0.0 | 658 |
| MS.gene053401.t1 | MTR_5g063920 | 52.836 | 617 | 261 | 6 | 2 | 601 | 5 | 608 | 0.0 | 658 |
| MS.gene053401.t1 | MTR_5g063920 | 50.780 | 449 | 190 | 6 | 170 | 601 | 10 | 444 | 4.10e-152 | 448 |
| MS.gene053401.t1 | MTR_4g011370 | 28.376 | 511 | 324 | 15 | 6 | 493 | 15 | 506 | 4.20e-49 | 179 |
| MS.gene053401.t1 | MTR_4g011370 | 28.454 | 485 | 306 | 14 | 6 | 466 | 15 | 482 | 2.44e-46 | 171 |
| MS.gene053401.t1 | MTR_4g011370 | 27.059 | 510 | 308 | 16 | 6 | 493 | 15 | 482 | 8.81e-42 | 158 |
| MS.gene053401.t1 | MTR_3g108700 | 27.347 | 490 | 282 | 17 | 2 | 446 | 94 | 554 | 1.83e-29 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053401.t1 | AT1G04400 | 66.229 | 533 | 171 | 3 | 5 | 534 | 6 | 532 | 0.0 | 734 |
| MS.gene053401.t1 | AT1G04400 | 66.229 | 533 | 171 | 3 | 5 | 534 | 6 | 532 | 0.0 | 734 |
| MS.gene053401.t1 | AT4G08920 | 52.445 | 593 | 270 | 5 | 7 | 596 | 15 | 598 | 0.0 | 632 |
| MS.gene053401.t1 | AT3G15620 | 29.356 | 528 | 325 | 19 | 6 | 505 | 26 | 533 | 1.65e-53 | 192 |
| MS.gene053401.t1 | AT3G15620 | 28.910 | 422 | 256 | 18 | 6 | 399 | 26 | 431 | 7.91e-35 | 137 |
| MS.gene053401.t1 | AT5G24850 | 28.541 | 466 | 289 | 17 | 2 | 444 | 82 | 526 | 7.46e-33 | 133 |
Find 117 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGATCCTTCAATGTTTA+AGG | 0.114298 | 1.4:+27564230 | MS.gene053401:CDS |
| CTATCTCCGTATATTCATTT+TGG | 0.143302 | 1.4:+27564003 | MS.gene053401:CDS |
| GTTGTGTTTAATCATCTTTA+TGG | 0.220247 | 1.4:+27562887 | MS.gene053401:CDS |
| TAAAACTGTCCTTCCTCTTT+AGG | 0.235821 | 1.4:-27562713 | None:intergenic |
| GAAGCAGTCTCTTTCTCATT+TGG | 0.269217 | 1.4:+27562763 | MS.gene053401:CDS |
| TTGTCCTTCAAGAAAACTTT+TGG | 0.273008 | 1.4:-27564930 | None:intergenic |
| TAGTACTCTTAAAGCACTTT+TGG | 0.293721 | 1.4:+27562835 | MS.gene053401:CDS |
| GTTGGAATTCTCGCCAATTC+AGG | 0.307627 | 1.4:-27564687 | None:intergenic |
| CTCTTTGGATTCTGAAGTAT+TGG | 0.315237 | 1.4:-27564996 | None:intergenic |
| TGCAAGCATCTATTCCAAAA+AGG | 0.318620 | 1.4:-27563611 | None:intergenic |
| TTAGGAGGATCATCACTCTT+TGG | 0.321111 | 1.4:-27565011 | None:intergenic |
| TCTATGTCGATGATTGGTTT+TGG | 0.322368 | 1.4:-27564786 | None:intergenic |
| CAGGATTGTCCTCAATTCTT+AGG | 0.325372 | 1.4:-27562637 | None:intergenic |
| ATAGGACCATAGTTTGGTTT+AGG | 0.327813 | 1.4:+27562609 | MS.gene053401:CDS |
| TGTTGCTTATACCTTGGAAA+TGG | 0.329641 | 1.4:+27564370 | MS.gene053401:CDS |
| CTCATTCCTGCATCAACTAA+TGG | 0.329714 | 1.4:-27564279 | None:intergenic |
| CAAAATGAATATACGGAGAT+AGG | 0.361934 | 1.4:-27564002 | None:intergenic |
| GTTGCTTATACCTTGGAAAT+GGG | 0.366312 | 1.4:+27564371 | MS.gene053401:CDS |
| AATTCTCCAAAATGAATATA+CGG | 0.366624 | 1.4:-27564009 | None:intergenic |
| ATTAATTGACAAGGAGGAAT+AGG | 0.377359 | 1.4:-27563656 | None:intergenic |
| ACCAATCATCGACATAGATT+TGG | 0.378217 | 1.4:+27564791 | MS.gene053401:CDS |
| TCGTCAATGGCTACCTGAAT+TGG | 0.379883 | 1.4:+27564674 | MS.gene053401:CDS |
| TGATCTTGAAAGTGATATCT+TGG | 0.390550 | 1.4:+27564428 | MS.gene053401:CDS |
| TTAAAATGTTGCTTATACCT+TGG | 0.391139 | 1.4:+27564364 | MS.gene053401:CDS |
| ATCCTTCAATGTTTAAGGCT+TGG | 0.397995 | 1.4:+27564235 | MS.gene053401:CDS |
| ATCAGAAAATGGGTATGAAT+AGG | 0.398859 | 1.4:+27562591 | None:intergenic |
| TGCAGGAATGAGAGAGCTTT+GGG | 0.404630 | 1.4:+27564290 | MS.gene053401:CDS |
| ATGCAGGAATGAGAGAGCTT+TGG | 0.404880 | 1.4:+27564289 | MS.gene053401:CDS |
| CGCTCAAGCTCGTGACCATC+AGG | 0.409441 | 1.4:-27564477 | None:intergenic |
| GCCAAATCTATGTCGATGAT+TGG | 0.412225 | 1.4:-27564792 | None:intergenic |
| GATCAGTCACTGAAATCTCT+TGG | 0.432839 | 1.4:+27562785 | MS.gene053401:CDS |
| CTCCAAGCCTTAAACATTGA+AGG | 0.434912 | 1.4:-27564237 | None:intergenic |
| CTTCAATGTTTAAGGCTTGG+AGG | 0.448036 | 1.4:+27564238 | MS.gene053401:CDS |
| AGAGCATCAGGTGTAGAGTT+AGG | 0.453032 | 1.4:+27564753 | MS.gene053401:CDS |
| GTATGAATAGGACCATAGTT+TGG | 0.457722 | 1.4:+27562603 | MS.gene053401:CDS |
| TTGGGTTGGCAGTATATCTC+CGG | 0.458839 | 1.4:+27564447 | MS.gene053401:CDS |
| ATGAGAGAGCTTTGGGCGAC+CGG | 0.460862 | 1.4:+27564297 | MS.gene053401:CDS |
| CTTAGCAAGCGGACTGATAC+CGG | 0.467453 | 1.4:+27565092 | MS.gene053401:CDS |
| ATGTTTAAGGCTTGGAGGCT+AGG | 0.469697 | 1.4:+27564243 | MS.gene053401:CDS |
| CGATAAAGAGGATCGAGAAC+AGG | 0.478530 | 1.4:+27565055 | MS.gene053401:CDS |
| GTCCCTCCTAAACCAAACTA+TGG | 0.481040 | 1.4:-27562615 | None:intergenic |
| TTTCTGTGCAAAGCTACAAT+GGG | 0.484165 | 1.4:+27563525 | MS.gene053401:CDS |
| CCTACTGTGCTAAGAGCATC+AGG | 0.485757 | 1.4:+27564741 | MS.gene053401:CDS |
| ACTGCTTGAACTCTGTCTCT+TGG | 0.489451 | 1.4:-27565162 | None:intergenic |
| TTAGCTAGAGCATGGTCTCC+AGG | 0.494738 | 1.4:+27563880 | MS.gene053401:CDS |
| CTTCTTCGTCAAATGATCAA+AGG | 0.495047 | 1.4:+27564970 | MS.gene053401:CDS |
| CTGCATTAGCTGCTGCTGCA+AGG | 0.495862 | 1.4:+27562657 | MS.gene053401:CDS |
| AAGGCGAATACGTTCGTCAA+TGG | 0.498860 | 1.4:+27564661 | MS.gene053401:CDS |
| TGCATTAGCTGCTGCTGCAA+GGG | 0.499127 | 1.4:+27562658 | MS.gene053401:CDS |
| GGACCATAGTTTGGTTTAGG+AGG | 0.499764 | 1.4:+27562612 | MS.gene053401:CDS |
| GATCTTGAAAGTGATATCTT+GGG | 0.500193 | 1.4:+27564429 | MS.gene053401:CDS |
| CTTTATTTGGTGTCCTAAAG+AGG | 0.502443 | 1.4:+27562700 | MS.gene053401:CDS |
| TTAGCTGCTGCTGCAAGGGA+TGG | 0.503348 | 1.4:+27562662 | MS.gene053401:CDS |
| CGGGTAGAGTGTCGAGGTGG+TGG | 0.504560 | 1.4:+27562738 | MS.gene053401:CDS |
| TTCTTCGTCAAATGATCAAA+GGG | 0.505200 | 1.4:+27564971 | MS.gene053401:CDS |
| GCTTGGAGGCTAGGTAGGAC+TGG | 0.519332 | 1.4:+27564252 | MS.gene053401:CDS |
| CACCACCTCGACACTCTACC+CGG | 0.521428 | 1.4:-27562737 | None:intergenic |
| TCACTGAAATCTCTTGGAGC+TGG | 0.521850 | 1.4:+27562791 | MS.gene053401:CDS |
| CTCAAGCTATATTCAAGATG+TGG | 0.523430 | 1.4:+27564829 | MS.gene053401:CDS |
| TTAAGGCTTGGAGGCTAGGT+AGG | 0.523693 | 1.4:+27564247 | MS.gene053401:CDS |
| CGGTATCAGTCCGCTTGCTA+AGG | 0.524783 | 1.4:-27565091 | None:intergenic |
| CTTGCAGCAGCAGCTAATGC+AGG | 0.525751 | 1.4:-27562656 | None:intergenic |
| GGATATCCATTAGTTGATGC+AGG | 0.527111 | 1.4:+27564273 | MS.gene053401:CDS |
| ATTTCTGTGCAAAGCTACAA+TGG | 0.528775 | 1.4:+27563524 | MS.gene053401:CDS |
| GACCATAGTTTGGTTTAGGA+GGG | 0.533212 | 1.4:+27562613 | MS.gene053401:CDS |
| TATTTCATTCCCCATTTCCA+AGG | 0.533939 | 1.4:-27564381 | None:intergenic |
| ACCGTCGAGAGGCCATTGCT+AGG | 0.534149 | 1.4:+27564183 | MS.gene053401:CDS |
| TAGGAGGGACCTAAGAATTG+AGG | 0.537254 | 1.4:+27562628 | MS.gene053401:CDS |
| ATTTGGTGTCCTAAAGAGGA+AGG | 0.543297 | 1.4:+27562704 | MS.gene053401:CDS |
| CCGTCGAGAGGCCATTGCTA+GGG | 0.543369 | 1.4:+27564184 | MS.gene053401:CDS |
| AATGGCCTCTCGACGGTGAA+CGG | 0.543863 | 1.4:-27564177 | None:intergenic |
| CTAGAGCATGGTCTCCAGGT+TGG | 0.544636 | 1.4:+27563884 | MS.gene053401:CDS |
| CTGAGTGGATCCATCATCCA+TGG | 0.545436 | 1.4:+27564709 | MS.gene053401:CDS |
| TGATCACGAACAAGTGAGAC+TGG | 0.549488 | 1.4:-27563470 | None:intergenic |
| GAGAGCTTTGGGCGACCGGA+TGG | 0.551139 | 1.4:+27564301 | MS.gene053401:CDS |
| GGATGATGGATCCACTCAGT+TGG | 0.557800 | 1.4:-27564705 | None:intergenic |
| ATTCAAGATGTGGGAAGATG+AGG | 0.561877 | 1.4:+27564839 | MS.gene053401:CDS |
| ACAGTAGGTGGTGCATTCCA+TGG | 0.562035 | 1.4:-27564726 | None:intergenic |
| TTGCTTATACCTTGGAAATG+GGG | 0.565679 | 1.4:+27564372 | MS.gene053401:CDS |
| AATTTCAAGTTCCCTAGCAA+TGG | 0.567410 | 1.4:-27564195 | None:intergenic |
| TTGATCAATGCATGACACTC+CGG | 0.568405 | 1.4:-27565111 | None:intergenic |
| GTGGTGCATTCCATGGATGA+TGG | 0.569550 | 1.4:-27564719 | None:intergenic |
| TGGTCACGAGCTTGAGCGGT+TGG | 0.573358 | 1.4:+27564482 | MS.gene053401:CDS |
| CCTGATGCTCTTAGCACAGT+AGG | 0.576112 | 1.4:-27564741 | None:intergenic |
| TTAGGACACCAAATAAAGAC+AGG | 0.576690 | 1.4:-27562695 | None:intergenic |
| TGGGTTGGCAGTATATCTCC+GGG | 0.580136 | 1.4:+27564448 | MS.gene053401:CDS |
| CTGATGGTCACGAGCTTGAG+CGG | 0.582318 | 1.4:+27564478 | MS.gene053401:CDS |
| TCAAGCTATATTCAAGATGT+GGG | 0.585612 | 1.4:+27564830 | MS.gene053401:CDS |
| TTGAAAGTGATATCTTGGGT+TGG | 0.587182 | 1.4:+27564433 | MS.gene053401:CDS |
| ATTTAAGTAACCTTAGCAAG+CGG | 0.591683 | 1.4:+27565081 | MS.gene053401:CDS |
| TGTGAGGAAAGTATTTCAGT+TGG | 0.593409 | 1.4:+27564035 | MS.gene053401:CDS |
| TGGCATATATATGACGAAAG+TGG | 0.593822 | 1.4:+27563566 | MS.gene053401:CDS |
| ATGGATACACAACAAAATGC+GGG | 0.597128 | 1.4:+27564320 | MS.gene053401:CDS |
| CCCTAGCAATGGCCTCTCGA+CGG | 0.600478 | 1.4:-27564184 | None:intergenic |
| GTGACCATCAGGTAAGCTCC+CGG | 0.601745 | 1.4:-27564466 | None:intergenic |
| ATTGAAGGATCAGTATTCCA+AGG | 0.605723 | 1.4:-27564222 | None:intergenic |
| AAACATTCAATTGAGCAACT+AGG | 0.612068 | 1.4:+27563820 | MS.gene053401:CDS |
| CTTTCGTCATATATATGCCA+CGG | 0.614882 | 1.4:-27563563 | None:intergenic |
| ATGCATTATTAGCTAGAGCA+TGG | 0.623271 | 1.4:+27563872 | MS.gene053401:CDS |
| TGAGTACTCTCGAAATCCAA+TGG | 0.628966 | 1.4:-27564133 | None:intergenic |
| GATGGATACACAACAAAATG+CGG | 0.629254 | 1.4:+27564319 | MS.gene053401:CDS |
| GGGACAAAATACGATTCAGA+AGG | 0.630951 | 1.4:+27564642 | MS.gene053401:CDS |
| TTTATCCGGGTAGAGTGTCG+AGG | 0.638088 | 1.4:+27562732 | MS.gene053401:CDS |
| GCTAGAATTAATTGACAAGG+AGG | 0.644384 | 1.4:-27563662 | None:intergenic |
| TGAGCGGTTGGACGATCCAG+AGG | 0.648762 | 1.4:+27564494 | MS.gene053401:CDS |
| TGGCGAGAATTCCAACTGAG+TGG | 0.655146 | 1.4:+27564694 | MS.gene053401:CDS |
| ATCTCCGGGAGCTTACCTGA+TGG | 0.656477 | 1.4:+27564462 | MS.gene053401:CDS |
| AGGTTGGAGCAAAAGTGACA+AGG | 0.665168 | 1.4:+27563900 | MS.gene053401:CDS |
| GACGAAGAAGTAGCGCCGCG+TGG | 0.670480 | 1.4:-27564957 | None:intergenic |
| AATATACGGAGATAGGAGTG+AGG | 0.680107 | 1.4:-27563995 | None:intergenic |
| TGTCAATTAATTCTAGCACA+AGG | 0.682737 | 1.4:+27563668 | MS.gene053401:CDS |
| TGTGCTAGAATTAATTGACA+AGG | 0.684750 | 1.4:-27563665 | None:intergenic |
| GATGCTCTTAGCACAGTAGG+TGG | 0.688179 | 1.4:-27564738 | None:intergenic |
| ATCCGGGTAGAGTGTCGAGG+TGG | 0.688806 | 1.4:+27562735 | MS.gene053401:CDS |
| TTGAAGGACAAGGCTCCACG+CGG | 0.705632 | 1.4:+27564942 | MS.gene053401:CDS |
| GGGACTTGTTACATGAACCG+TGG | 0.709661 | 1.4:+27563546 | MS.gene053401:CDS |
| TTCTGTGCAAAGCTACAATG+GGG | 0.718476 | 1.4:+27563526 | MS.gene053401:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTCCAAAATGAATATA+CGG | - | chr1.4:27564012-27564031 | None:intergenic | 20.0% |
| !! | ACAAAAAGTAGATTAAATCT+TGG | + | chr1.4:27563961-27563980 | MS.gene053401:CDS | 20.0% |
| !!! | AAACTTGTTTACAATTGATA+TGG | + | chr1.4:27563033-27563052 | MS.gene053401:intron | 20.0% |
| ! | AAAGAAAAATTAGTGGAACT+TGG | + | chr1.4:27563500-27563519 | MS.gene053401:CDS | 25.0% |
| ! | AGATATCATACAAGTATTTG+TGG | + | chr1.4:27563220-27563239 | MS.gene053401:intron | 25.0% |
| ! | CAACATCAAAGAAAAATTAG+TGG | + | chr1.4:27563493-27563512 | MS.gene053401:CDS | 25.0% |
| ! | GTTGTGTTTAATCATCTTTA+TGG | + | chr1.4:27562887-27562906 | MS.gene053401:CDS | 25.0% |
| ! | TCAAAAAAAACTAGTGTAGT+TGG | + | chr1.4:27563166-27563185 | MS.gene053401:intron | 25.0% |
| !! | AAAGAAATCCATCTTTTCAA+TGG | - | chr1.4:27562922-27562941 | None:intergenic | 25.0% |
| !! | AATGGGGAATGAAATATTTT+TGG | + | chr1.4:27564388-27564407 | MS.gene053401:CDS | 25.0% |
| !! | ACAAAAATGTATCGATAAAG+AGG | + | chr1.4:27565043-27565062 | MS.gene053401:CDS | 25.0% |
| !! | ATGGGGAATGAAATATTTTT+GGG | + | chr1.4:27564389-27564408 | MS.gene053401:CDS | 25.0% |
| !! | TTAAAATGTTGCTTATACCT+TGG | + | chr1.4:27564364-27564383 | MS.gene053401:CDS | 25.0% |
| !!! | AACTTCATGTTTATTTTCTG+AGG | - | chr1.4:27564883-27564902 | None:intergenic | 25.0% |
| !!! | ACTACACTAGTTTTTTTTGA+AGG | - | chr1.4:27563166-27563185 | None:intergenic | 25.0% |
| !!! | CATTTTTGTTTCTTCGTATT+AGG | - | chr1.4:27565032-27565051 | None:intergenic | 25.0% |
| !!! | GTTTGTTTCTTTTGTTGTTT+TGG | + | chr1.4:27563780-27563799 | MS.gene053401:intron | 25.0% |
| !!! | TACTTTTTGTGTAGTGAATT+AGG | - | chr1.4:27563951-27563970 | None:intergenic | 25.0% |
| AAACATTCAATTGAGCAACT+AGG | + | chr1.4:27563820-27563839 | MS.gene053401:CDS | 30.0% | |
| AAGTGATTCCATTGAAAAGA+TGG | + | chr1.4:27562911-27562930 | MS.gene053401:intron | 30.0% | |
| ATTAATTGACAAGGAGGAAT+AGG | - | chr1.4:27563659-27563678 | None:intergenic | 30.0% | |
| ATTTAAGTAACCTTAGCAAG+CGG | + | chr1.4:27565081-27565100 | MS.gene053401:CDS | 30.0% | |
| CAAAATGAATATACGGAGAT+AGG | - | chr1.4:27564005-27564024 | None:intergenic | 30.0% | |
| CTATTTGGTTATCTGATATG+CGG | + | chr1.4:27563329-27563348 | MS.gene053401:intron | 30.0% | |
| GAATGAGTGTGATAAATTCA+TGG | - | chr1.4:27563283-27563302 | None:intergenic | 30.0% | |
| GATCTTGAAAGTGATATCTT+GGG | + | chr1.4:27564429-27564448 | MS.gene053401:CDS | 30.0% | |
| TACCTCGAGAGTTAATAAAT+CGG | + | chr1.4:27563000-27563019 | MS.gene053401:intron | 30.0% | |
| TACTGATCCTTCAATGTTTA+AGG | + | chr1.4:27564230-27564249 | MS.gene053401:CDS | 30.0% | |
| TCAAGCTATATTCAAGATGT+GGG | + | chr1.4:27564830-27564849 | MS.gene053401:CDS | 30.0% | |
| TCTATTCCAAAAAGGATCAA+AGG | - | chr1.4:27563606-27563625 | None:intergenic | 30.0% | |
| TGAATTTATCACACTCATTC+CGG | + | chr1.4:27563283-27563302 | MS.gene053401:intron | 30.0% | |
| TGATCTTGAAAGTGATATCT+TGG | + | chr1.4:27564428-27564447 | MS.gene053401:CDS | 30.0% | |
| TGTAGCAAAACTAGTATAGT+TGG | + | chr1.4:27563133-27563152 | MS.gene053401:intron | 30.0% | |
| TGTCAATTAATTCTAGCACA+AGG | + | chr1.4:27563668-27563687 | MS.gene053401:CDS | 30.0% | |
| TGTGCTAGAATTAATTGACA+AGG | - | chr1.4:27563668-27563687 | None:intergenic | 30.0% | |
| TGTTTCACTGTCTTTCTATT+TGG | + | chr1.4:27563314-27563333 | MS.gene053401:intron | 30.0% | |
| TTCTTCGTCAAATGATCAAA+GGG | + | chr1.4:27564971-27564990 | MS.gene053401:CDS | 30.0% | |
| ! | AAAAGTTTTCTTGAAGGACA+AGG | + | chr1.4:27564932-27564951 | MS.gene053401:CDS | 30.0% |
| ! | AACTTTTGTGAACAGATTCA+AGG | + | chr1.4:27564621-27564640 | MS.gene053401:intron | 30.0% |
| ! | ACTTTTGTGAACAGATTCAA+GGG | + | chr1.4:27564622-27564641 | MS.gene053401:intron | 30.0% |
| ! | CAGATTTTATGGAAAAACGA+AGG | + | chr1.4:27564069-27564088 | MS.gene053401:CDS | 30.0% |
| ! | CTATCTCCGTATATTCATTT+TGG | + | chr1.4:27564003-27564022 | MS.gene053401:CDS | 30.0% |
| ! | GATTCCAAAAGTTTTCTTGA+AGG | + | chr1.4:27564926-27564945 | MS.gene053401:CDS | 30.0% |
| ! | TTACAACCTTTGATCCTTTT+TGG | + | chr1.4:27563597-27563616 | MS.gene053401:CDS | 30.0% |
| ! | TTGTCCTTCAAGAAAACTTT+TGG | - | chr1.4:27564933-27564952 | None:intergenic | 30.0% |
| ! | TTGTGTTTTCTTGTATTGCA+CGG | + | chr1.4:27564521-27564540 | MS.gene053401:intron | 30.0% |
| !! | CTGTTTTTCCTGTCTTTATT+TGG | + | chr1.4:27562687-27562706 | MS.gene053401:CDS | 30.0% |
| !! | TAGGTTGTTTTCGACAAATT+CGG | - | chr1.4:27563932-27563951 | None:intergenic | 30.0% |
| !! | TAGTACTCTTAAAGCACTTT+TGG | + | chr1.4:27562835-27562854 | MS.gene053401:CDS | 30.0% |
| !! | TTCATGTTTATTTTCTGAGG+TGG | - | chr1.4:27564880-27564899 | None:intergenic | 30.0% |
| !! | TTTTGTTTCTTCGTATTAGG+AGG | - | chr1.4:27565029-27565048 | None:intergenic | 30.0% |
| !!! | GGAACTTGAAATTTTTTCCT+TGG | + | chr1.4:27564205-27564224 | MS.gene053401:CDS | 30.0% |
| AAAAACGAAGGAAACATCGT+CGG | + | chr1.4:27564081-27564100 | MS.gene053401:CDS | 35.0% | |
| AAGAAAACACAACTTACCTC+TGG | - | chr1.4:27564513-27564532 | None:intergenic | 35.0% | |
| ACCAATCATCGACATAGATT+TGG | + | chr1.4:27564791-27564810 | MS.gene053401:CDS | 35.0% | |
| ACTCACTTGAATTTGTAGAC+AGG | - | chr1.4:27563760-27563779 | None:intergenic | 35.0% | |
| ACTGGATCTGTTAAAAGAAG+TGG | - | chr1.4:27563455-27563474 | None:intergenic | 35.0% | |
| ATGCATTATTAGCTAGAGCA+TGG | + | chr1.4:27563872-27563891 | MS.gene053401:CDS | 35.0% | |
| ATGGATACACAACAAAATGC+GGG | + | chr1.4:27564320-27564339 | MS.gene053401:CDS | 35.0% | |
| ATTGAAGGATCAGTATTCCA+AGG | - | chr1.4:27564225-27564244 | None:intergenic | 35.0% | |
| ATTTCTGTGCAAAGCTACAA+TGG | + | chr1.4:27563524-27563543 | MS.gene053401:CDS | 35.0% | |
| CTCAAGCTATATTCAAGATG+TGG | + | chr1.4:27564829-27564848 | MS.gene053401:CDS | 35.0% | |
| CTTCTTCGTCAAATGATCAA+AGG | + | chr1.4:27564970-27564989 | MS.gene053401:CDS | 35.0% | |
| CTTTCGTCATATATATGCCA+CGG | - | chr1.4:27563566-27563585 | None:intergenic | 35.0% | |
| GATATGAAACAGATCAGTGA+AGG | - | chr1.4:27563405-27563424 | None:intergenic | 35.0% | |
| GATGGATACACAACAAAATG+CGG | + | chr1.4:27564319-27564338 | MS.gene053401:CDS | 35.0% | |
| GCTAGAATTAATTGACAAGG+AGG | - | chr1.4:27563665-27563684 | None:intergenic | 35.0% | |
| GTATGAATAGGACCATAGTT+TGG | + | chr1.4:27562603-27562622 | MS.gene053401:CDS | 35.0% | |
| GTTGCTTATACCTTGGAAAT+GGG | + | chr1.4:27564371-27564390 | MS.gene053401:CDS | 35.0% | |
| TAAAACTGTCCTTCCTCTTT+AGG | - | chr1.4:27562716-27562735 | None:intergenic | 35.0% | |
| TAAAAGAAGTGGAGATCATC+AGG | - | chr1.4:27563444-27563463 | None:intergenic | 35.0% | |
| TATTTCATTCCCCATTTCCA+AGG | - | chr1.4:27564384-27564403 | None:intergenic | 35.0% | |
| TGCAAGCATCTATTCCAAAA+AGG | - | chr1.4:27563614-27563633 | None:intergenic | 35.0% | |
| TGGCATATATATGACGAAAG+TGG | + | chr1.4:27563566-27563585 | MS.gene053401:CDS | 35.0% | |
| TTAGGACACCAAATAAAGAC+AGG | - | chr1.4:27562698-27562717 | None:intergenic | 35.0% | |
| TTATTAACTCTCGAGGTAAC+AGG | - | chr1.4:27562998-27563017 | None:intergenic | 35.0% | |
| TTGAAAGTGATATCTTGGGT+TGG | + | chr1.4:27564433-27564452 | MS.gene053401:CDS | 35.0% | |
| TTGCTTATACCTTGGAAATG+GGG | + | chr1.4:27564372-27564391 | MS.gene053401:CDS | 35.0% | |
| TTTCTGTGCAAAGCTACAAT+GGG | + | chr1.4:27563525-27563544 | MS.gene053401:CDS | 35.0% | |
| ! | ACATAAACTGATTCTCACTC+TGG | - | chr1.4:27563077-27563096 | None:intergenic | 35.0% |
| ! | ATAGGACCATAGTTTGGTTT+AGG | + | chr1.4:27562609-27562628 | MS.gene053401:CDS | 35.0% |
| ! | ATCCTTCAATGTTTAAGGCT+TGG | + | chr1.4:27564235-27564254 | MS.gene053401:CDS | 35.0% |
| ! | CACGAACGAAACAGATTTTA+TGG | + | chr1.4:27564058-27564077 | MS.gene053401:CDS | 35.0% |
| ! | TGTTGCTTATACCTTGGAAA+TGG | + | chr1.4:27564370-27564389 | MS.gene053401:CDS | 35.0% |
| !! | AATTTCAAGTTCCCTAGCAA+TGG | - | chr1.4:27564198-27564217 | None:intergenic | 35.0% |
| !! | ATTTTGGAGAATTGAGTGTG+AGG | + | chr1.4:27564019-27564038 | MS.gene053401:CDS | 35.0% |
| !! | CATTTTGTTGTGTATCCATC+CGG | - | chr1.4:27564319-27564338 | None:intergenic | 35.0% |
| !! | CTCTTTGGATTCTGAAGTAT+TGG | - | chr1.4:27564999-27565018 | None:intergenic | 35.0% |
| !! | CTTTATTTGGTGTCCTAAAG+AGG | + | chr1.4:27562700-27562719 | MS.gene053401:CDS | 35.0% |
| !! | TACCGATTTATTAACTCTCG+AGG | - | chr1.4:27563005-27563024 | None:intergenic | 35.0% |
| !! | TGTGAGGAAAGTATTTCAGT+TGG | + | chr1.4:27564035-27564054 | MS.gene053401:CDS | 35.0% |
| !!! | ACGTTTTTTCTCAAAGCCAT+TGG | + | chr1.4:27564117-27564136 | MS.gene053401:CDS | 35.0% |
| !!! | TCTATGTCGATGATTGGTTT+TGG | - | chr1.4:27564789-27564808 | None:intergenic | 35.0% |
| !!! | TCTTTTGTTGTTTTGGTGAC+AGG | + | chr1.4:27563787-27563806 | MS.gene053401:intron | 35.0% |
| AATATACGGAGATAGGAGTG+AGG | - | chr1.4:27563998-27564017 | None:intergenic | 40.0% | |
| ACAGTGAAACATTCAGACAC+CGG | - | chr1.4:27563305-27563324 | None:intergenic | 40.0% | |
| ATTCAAGATGTGGGAAGATG+AGG | + | chr1.4:27564839-27564858 | MS.gene053401:CDS | 40.0% | |
| CAGGATTGTCCTCAATTCTT+AGG | - | chr1.4:27562640-27562659 | None:intergenic | 40.0% | |
| CTCATTCCTGCATCAACTAA+TGG | - | chr1.4:27564282-27564301 | None:intergenic | 40.0% | |
| CTCCAAGCCTTAAACATTGA+AGG | - | chr1.4:27564240-27564259 | None:intergenic | 40.0% | |
| GAAGCAGTCTCTTTCTCATT+TGG | + | chr1.4:27562763-27562782 | MS.gene053401:CDS | 40.0% | |
| GATCAGTCACTGAAATCTCT+TGG | + | chr1.4:27562785-27562804 | MS.gene053401:CDS | 40.0% | |
| GCCAAATCTATGTCGATGAT+TGG | - | chr1.4:27564795-27564814 | None:intergenic | 40.0% | |
| GGGACAAAATACGATTCAGA+AGG | + | chr1.4:27564642-27564661 | MS.gene053401:CDS | 40.0% | |
| TGAGTACTCTCGAAATCCAA+TGG | - | chr1.4:27564136-27564155 | None:intergenic | 40.0% | |
| TTAGGAGGATCATCACTCTT+TGG | - | chr1.4:27565014-27565033 | None:intergenic | 40.0% | |
| TTCTGTGCAAAGCTACAATG+GGG | + | chr1.4:27563526-27563545 | MS.gene053401:CDS | 40.0% | |
| TTGATCAATGCATGACACTC+CGG | - | chr1.4:27565114-27565133 | None:intergenic | 40.0% | |
| ! | CTTCAATGTTTAAGGCTTGG+AGG | + | chr1.4:27564238-27564257 | MS.gene053401:CDS | 40.0% |
| ! | GACCATAGTTTGGTTTAGGA+GGG | + | chr1.4:27562613-27562632 | MS.gene053401:CDS | 40.0% |
| ! | GGATATCCATTAGTTGATGC+AGG | + | chr1.4:27564273-27564292 | MS.gene053401:CDS | 40.0% |
| !! | AGAGGAAGGACAGTTTTATC+CGG | + | chr1.4:27562718-27562737 | MS.gene053401:CDS | 40.0% |
| !! | ATTTGGTGTCCTAAAGAGGA+AGG | + | chr1.4:27562704-27562723 | MS.gene053401:CDS | 40.0% |
| AAGGCGAATACGTTCGTCAA+TGG | + | chr1.4:27564661-27564680 | MS.gene053401:CDS | 45.0% | |
| ACTGCTTGAACTCTGTCTCT+TGG | - | chr1.4:27565165-27565184 | None:intergenic | 45.0% | |
| AGGTTGGAGCAAAAGTGACA+AGG | + | chr1.4:27563900-27563919 | MS.gene053401:CDS | 45.0% | |
| ATGCAGGAATGAGAGAGCTT+TGG | + | chr1.4:27564289-27564308 | MS.gene053401:CDS | 45.0% | |
| CGATAAAGAGGATCGAGAAC+AGG | + | chr1.4:27565055-27565074 | MS.gene053401:CDS | 45.0% | |
| GTCCCTCCTAAACCAAACTA+TGG | - | chr1.4:27562618-27562637 | None:intergenic | 45.0% | |
| GTTGGAATTCTCGCCAATTC+AGG | - | chr1.4:27564690-27564709 | None:intergenic | 45.0% | |
| TAGGAGGGACCTAAGAATTG+AGG | + | chr1.4:27562628-27562647 | MS.gene053401:CDS | 45.0% | |
| TCACTGAAATCTCTTGGAGC+TGG | + | chr1.4:27562791-27562810 | MS.gene053401:CDS | 45.0% | |
| TCGTCAATGGCTACCTGAAT+TGG | + | chr1.4:27564674-27564693 | MS.gene053401:CDS | 45.0% | |
| TGATCACGAACAAGTGAGAC+TGG | - | chr1.4:27563473-27563492 | None:intergenic | 45.0% | |
| TGCAGGAATGAGAGAGCTTT+GGG | + | chr1.4:27564290-27564309 | MS.gene053401:CDS | 45.0% | |
| ! | AGAGCATCAGGTGTAGAGTT+AGG | + | chr1.4:27564753-27564772 | MS.gene053401:CDS | 45.0% |
| ! | ATGTTTAAGGCTTGGAGGCT+AGG | + | chr1.4:27564243-27564262 | MS.gene053401:CDS | 45.0% |
| ! | GGACCATAGTTTGGTTTAGG+AGG | + | chr1.4:27562612-27562631 | MS.gene053401:CDS | 45.0% |
| !! | GAGGAAGGACAGTTTTATCC+GGG | + | chr1.4:27562719-27562738 | MS.gene053401:CDS | 45.0% |
| !! | TTGGGTTGGCAGTATATCTC+CGG | + | chr1.4:27564447-27564466 | MS.gene053401:CDS | 45.0% |
| !!! | TTGTCACTTTTGCTCCAACC+TGG | - | chr1.4:27563901-27563920 | None:intergenic | 45.0% |
| ACAGTAGGTGGTGCATTCCA+TGG | - | chr1.4:27564729-27564748 | None:intergenic | 50.0% | |
| CCTGATGCTCTTAGCACAGT+AGG | - | chr1.4:27564744-27564763 | None:intergenic | 50.0% | |
| CTGAGTGGATCCATCATCCA+TGG | + | chr1.4:27564709-27564728 | MS.gene053401:CDS | 50.0% | |
| GATGCTCTTAGCACAGTAGG+TGG | - | chr1.4:27564741-27564760 | None:intergenic | 50.0% | |
| GTGGTGCATTCCATGGATGA+TGG | - | chr1.4:27564722-27564741 | None:intergenic | 50.0% | |
| TGCATTAGCTGCTGCTGCAA+GGG | + | chr1.4:27562658-27562677 | MS.gene053401:CDS | 50.0% | |
| TGGCGAGAATTCCAACTGAG+TGG | + | chr1.4:27564694-27564713 | MS.gene053401:CDS | 50.0% | |
| TTAAGGCTTGGAGGCTAGGT+AGG | + | chr1.4:27564247-27564266 | MS.gene053401:CDS | 50.0% | |
| TTAGCTAGAGCATGGTCTCC+AGG | + | chr1.4:27563880-27563899 | MS.gene053401:CDS | 50.0% | |
| !! | CCTACTGTGCTAAGAGCATC+AGG | + | chr1.4:27564741-27564760 | MS.gene053401:CDS | 50.0% |
| !! | CTTAGCAAGCGGACTGATAC+CGG | + | chr1.4:27565092-27565111 | MS.gene053401:CDS | 50.0% |
| !! | GGATGATGGATCCACTCAGT+TGG | - | chr1.4:27564708-27564727 | None:intergenic | 50.0% |
| !! | GGGACTTGTTACATGAACCG+TGG | + | chr1.4:27563546-27563565 | MS.gene053401:CDS | 50.0% |
| !! | TGGGTTGGCAGTATATCTCC+GGG | + | chr1.4:27564448-27564467 | MS.gene053401:CDS | 50.0% |
| !! | TTTATCCGGGTAGAGTGTCG+AGG | + | chr1.4:27562732-27562751 | MS.gene053401:CDS | 50.0% |
| AATGGCCTCTCGACGGTGAA+CGG | - | chr1.4:27564180-27564199 | None:intergenic | 55.0% | |
| ATCTCCGGGAGCTTACCTGA+TGG | + | chr1.4:27564462-27564481 | MS.gene053401:CDS | 55.0% | |
| CTAGAGCATGGTCTCCAGGT+TGG | + | chr1.4:27563884-27563903 | MS.gene053401:CDS | 55.0% | |
| CTGATGGTCACGAGCTTGAG+CGG | + | chr1.4:27564478-27564497 | MS.gene053401:CDS | 55.0% | |
| CTGCATTAGCTGCTGCTGCA+AGG | + | chr1.4:27562657-27562676 | MS.gene053401:CDS | 55.0% | |
| CTTGCAGCAGCAGCTAATGC+AGG | - | chr1.4:27562659-27562678 | None:intergenic | 55.0% | |
| GTGACCATCAGGTAAGCTCC+CGG | - | chr1.4:27564469-27564488 | None:intergenic | 55.0% | |
| TTAGCTGCTGCTGCAAGGGA+TGG | + | chr1.4:27562662-27562681 | MS.gene053401:CDS | 55.0% | |
| TTGAAGGACAAGGCTCCACG+CGG | + | chr1.4:27564942-27564961 | MS.gene053401:CDS | 55.0% | |
| ! | CGGTATCAGTCCGCTTGCTA+AGG | - | chr1.4:27565094-27565113 | None:intergenic | 55.0% |
| ! | GTTTTCCGTTCACCGTCGAG+AGG | + | chr1.4:27564172-27564191 | MS.gene053401:CDS | 55.0% |
| !! | ATGAGAGAGCTTTGGGCGAC+CGG | + | chr1.4:27564297-27564316 | MS.gene053401:CDS | 55.0% |
| ACCGTCGAGAGGCCATTGCT+AGG | + | chr1.4:27564183-27564202 | MS.gene053401:CDS | 60.0% | |
| CACCACCTCGACACTCTACC+CGG | - | chr1.4:27562740-27562759 | None:intergenic | 60.0% | |
| CCCTAGCAATGGCCTCTCGA+CGG | - | chr1.4:27564187-27564206 | None:intergenic | 60.0% | |
| CCGTCGAGAGGCCATTGCTA+GGG | + | chr1.4:27564184-27564203 | MS.gene053401:CDS | 60.0% | |
| CGCTCAAGCTCGTGACCATC+AGG | - | chr1.4:27564480-27564499 | None:intergenic | 60.0% | |
| GCTTGGAGGCTAGGTAGGAC+TGG | + | chr1.4:27564252-27564271 | MS.gene053401:CDS | 60.0% | |
| TGAGCGGTTGGACGATCCAG+AGG | + | chr1.4:27564494-27564513 | MS.gene053401:CDS | 60.0% | |
| TGGTCACGAGCTTGAGCGGT+TGG | + | chr1.4:27564482-27564501 | MS.gene053401:CDS | 60.0% | |
| !! | ATCCGGGTAGAGTGTCGAGG+TGG | + | chr1.4:27562735-27562754 | MS.gene053401:CDS | 60.0% |
| GACGAAGAAGTAGCGCCGCG+TGG | - | chr1.4:27564960-27564979 | None:intergenic | 65.0% | |
| !! | CGGGTAGAGTGTCGAGGTGG+TGG | + | chr1.4:27562738-27562757 | MS.gene053401:CDS | 65.0% |
| !! | GAGAGCTTTGGGCGACCGGA+TGG | + | chr1.4:27564301-27564320 | MS.gene053401:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 27562599 | 27565205 | 27562599 | ID=MS.gene053401 |
| chr1.4 | mRNA | 27562599 | 27565205 | 27562599 | ID=MS.gene053401.t1;Parent=MS.gene053401 |
| chr1.4 | exon | 27562599 | 27562908 | 27562599 | ID=MS.gene053401.t1.exon1;Parent=MS.gene053401.t1 |
| chr1.4 | CDS | 27562599 | 27562908 | 27562599 | ID=cds.MS.gene053401.t1;Parent=MS.gene053401.t1 |
| chr1.4 | exon | 27563468 | 27563689 | 27563468 | ID=MS.gene053401.t1.exon2;Parent=MS.gene053401.t1 |
| chr1.4 | CDS | 27563468 | 27563689 | 27563468 | ID=cds.MS.gene053401.t1;Parent=MS.gene053401.t1 |
| chr1.4 | exon | 27563809 | 27564515 | 27563809 | ID=MS.gene053401.t1.exon3;Parent=MS.gene053401.t1 |
| chr1.4 | CDS | 27563809 | 27564515 | 27563809 | ID=cds.MS.gene053401.t1;Parent=MS.gene053401.t1 |
| chr1.4 | exon | 27564636 | 27565205 | 27564636 | ID=MS.gene053401.t1.exon4;Parent=MS.gene053401.t1 |
| chr1.4 | CDS | 27564636 | 27565205 | 27564636 | ID=cds.MS.gene053401.t1;Parent=MS.gene053401.t1 |
| Gene Sequence |
| Protein sequence |
