Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51015.t1 | XP_013463088.1 | 69.9 | 113 | 25 | 2 | 15 | 127 | 77 | 180 | 1.70E-32 | 149.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51015.t1 | Q5MAU8 | 83.6 | 73 | 12 | 0 | 124 | 196 | 293 | 365 | 2.9e-30 | 133.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51015.t1 | Q5QQ34 | 69.9 | 113 | 25 | 2 | 15 | 127 | 77 | 180 | 1.2e-32 | 149.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054124 | MS.gene51015 | 0.894784 | 1.78E-75 | -1.69E-46 |
| MS.gene056167 | MS.gene51015 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene056168 | MS.gene51015 | 0.806835 | 6.78E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene51015 | 0.80434 | 2.26E-49 | -1.69E-46 |
| MS.gene060036 | MS.gene51015 | 0.816416 | 5.59E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51015.t1 | MTR_2g032130 | 69.298 | 114 | 26 | 2 | 15 | 128 | 77 | 181 | 2.69e-46 | 156 |
| MS.gene51015.t1 | MTR_4g103520 | 89.189 | 74 | 8 | 0 | 124 | 197 | 232 | 305 | 5.14e-40 | 145 |
| MS.gene51015.t1 | MTR_4g103520 | 89.189 | 74 | 8 | 0 | 124 | 197 | 309 | 382 | 8.16e-40 | 145 |
| MS.gene51015.t1 | MTR_3g074960 | 78.082 | 73 | 16 | 0 | 124 | 196 | 266 | 338 | 4.80e-33 | 125 |
| MS.gene51015.t1 | MTR_8g063080 | 72.973 | 74 | 20 | 0 | 124 | 197 | 294 | 367 | 1.48e-32 | 125 |
| MS.gene51015.t1 | MTR_3g074930 | 75.676 | 74 | 18 | 0 | 124 | 197 | 305 | 378 | 2.36e-32 | 124 |
| MS.gene51015.t1 | MTR_3g074930 | 75.676 | 74 | 18 | 0 | 124 | 197 | 312 | 385 | 2.52e-32 | 124 |
| MS.gene51015.t1 | MTR_5g045600 | 75.676 | 74 | 18 | 0 | 124 | 197 | 301 | 374 | 4.56e-32 | 124 |
| MS.gene51015.t1 | MTR_3g074970 | 67.105 | 76 | 22 | 1 | 124 | 199 | 254 | 326 | 7.64e-27 | 108 |
| MS.gene51015.t1 | MTR_4g128220 | 81.481 | 54 | 10 | 0 | 1 | 54 | 1 | 54 | 2.23e-21 | 91.7 |
| MS.gene51015.t1 | MTR_4g128220 | 81.481 | 54 | 10 | 0 | 1 | 54 | 1 | 54 | 2.46e-21 | 91.7 |
| MS.gene51015.t1 | MTR_4g128220 | 81.481 | 54 | 10 | 0 | 1 | 54 | 1 | 54 | 2.47e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51015.t1 | AT1G30630 | 57.018 | 114 | 40 | 2 | 15 | 128 | 80 | 184 | 1.30e-38 | 136 |
| MS.gene51015.t1 | AT2G34840 | 66.667 | 93 | 23 | 1 | 44 | 128 | 14 | 106 | 1.47e-38 | 134 |
| MS.gene51015.t1 | AT2G34840 | 66.667 | 93 | 23 | 1 | 44 | 128 | 93 | 185 | 9.34e-38 | 134 |
| MS.gene51015.t1 | AT5G50400 | 82.432 | 74 | 13 | 0 | 124 | 197 | 221 | 294 | 1.93e-37 | 138 |
| MS.gene51015.t1 | AT5G50400 | 82.432 | 74 | 13 | 0 | 124 | 197 | 293 | 366 | 4.91e-37 | 137 |
| MS.gene51015.t1 | AT4G24890 | 75.676 | 74 | 18 | 0 | 124 | 197 | 297 | 370 | 1.98e-34 | 130 |
| MS.gene51015.t1 | AT1G13750 | 68.919 | 74 | 23 | 0 | 124 | 197 | 295 | 368 | 8.30e-28 | 111 |
| MS.gene51015.t1 | AT4G30240 | 33.750 | 160 | 97 | 4 | 1 | 157 | 1 | 154 | 3.19e-15 | 73.9 |
| MS.gene51015.t1 | AT2G18860 | 73.810 | 42 | 11 | 0 | 1 | 42 | 1 | 42 | 1.24e-14 | 72.0 |
| MS.gene51015.t1 | AT2G18860 | 73.810 | 42 | 11 | 0 | 1 | 42 | 1 | 42 | 2.02e-14 | 71.6 |
Find 51 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCTAATTGTTTCGATCTA+TGG | 0.237765 | 3.2:+30488272 | MS.gene51015:CDS |
| GTTTGCTTCCTTGCGTTCTA+AGG | 0.273677 | 3.2:+30492315 | MS.gene51015:CDS |
| TGCAAATGCTTGGCTTGATT+TGG | 0.285359 | 3.2:+30489432 | MS.gene51015:CDS |
| CTCTGCAGCCGAGGAAGTTC+AGG | 0.303119 | 3.2:+30488312 | MS.gene51015:CDS |
| TTGTGCCTGTCCGCTGCTGC+CGG | 0.321298 | 3.2:+30492209 | MS.gene51015:CDS |
| ACAAACCTGGCAATCATATA+TGG | 0.330604 | 3.2:-30491692 | None:intergenic |
| TGTCCGCTGCTGCCGGGCTT+TGG | 0.330924 | 3.2:+30492216 | MS.gene51015:CDS |
| GCAGATGCGTGTTGCTTGTT+TGG | 0.369582 | 3.2:+30492253 | MS.gene51015:CDS |
| TGTGCCTGTCCGCTGCTGCC+GGG | 0.407689 | 3.2:+30492210 | MS.gene51015:CDS |
| GTTCCACTTGAGCTGTGAAT+TGG | 0.431110 | 3.2:-30491652 | None:intergenic |
| ACAATGTTGAGGCTTGTTGC+TGG | 0.449037 | 3.2:+30488884 | MS.gene51015:CDS |
| TATGGTGCTGTTGATGCAAT+TGG | 0.457218 | 3.2:-30491674 | None:intergenic |
| TACTAATGCTGGTGGAATCA+TGG | 0.459367 | 3.2:+30488952 | MS.gene51015:CDS |
| TTACTCAGCTTGCAAATGCT+TGG | 0.460646 | 3.2:+30489422 | MS.gene51015:CDS |
| ACAGAATGGAATCAGCATAC+AGG | 0.470613 | 3.2:+30488813 | MS.gene51015:intron |
| AAAGCCCGGCAGCAGCGGAC+AGG | 0.475316 | 3.2:-30492214 | None:intergenic |
| CAGCACCATATATGATTGCC+AGG | 0.489544 | 3.2:+30491687 | MS.gene51015:CDS |
| GGTTAAGAGAGAAGAGAGAA+AGG | 0.498990 | 3.2:+30488840 | MS.gene51015:CDS |
| AGAGGAAGTGTACATATCAA+TGG | 0.502816 | 3.2:-30488338 | None:intergenic |
| ATAATTTATTAAGCTGAACT+AGG | 0.503775 | 3.2:-30492349 | None:intergenic |
| CAGAATGGAATCAGCATACA+GGG | 0.520364 | 3.2:+30488814 | MS.gene51015:intron |
| TGCTTGGCTTGATTTGGCTG+TGG | 0.525363 | 3.2:+30489438 | MS.gene51015:CDS |
| CAATGTTGAGGCTTGTTGCT+GGG | 0.533934 | 3.2:+30488885 | MS.gene51015:CDS |
| AGGAAGCAAACAGATACAAC+CGG | 0.534207 | 3.2:-30492303 | None:intergenic |
| CTACCAAAGCCCGGCAGCAG+CGG | 0.535968 | 3.2:-30492219 | None:intergenic |
| AATGGATTCCTGAACTTCCT+CGG | 0.545655 | 3.2:-30488320 | None:intergenic |
| GAGTATAGCAACTACCAACC+TGG | 0.547240 | 3.2:+30491524 | MS.gene51015:CDS |
| GGAGATATATCATATGCAAA+CGG | 0.549334 | 3.2:+30491611 | MS.gene51015:CDS |
| CACCGCTGACCGGCTTATCG+AGG | 0.559279 | 3.2:+30491556 | MS.gene51015:CDS |
| TGGAATCAGCATACAGGGCA+TGG | 0.573816 | 3.2:+30488819 | MS.gene51015:CDS |
| GAGAGAAAGGTCAAATCTAG+AGG | 0.575402 | 3.2:+30488853 | MS.gene51015:CDS |
| AAAGGTCAAATCTAGAGGAA+TGG | 0.579624 | 3.2:+30488858 | MS.gene51015:CDS |
| TTCTTTCTTCTCTGCAGCCG+AGG | 0.584953 | 3.2:+30488303 | MS.gene51015:CDS |
| CTATAACAACTACCAAAGCC+CGG | 0.589144 | 3.2:-30492228 | None:intergenic |
| AGATCTTTATTAAGATGCAT+AGG | 0.590426 | 3.2:+30489341 | MS.gene51015:CDS |
| GCGTTGAAGTATACTAATGC+TGG | 0.593369 | 3.2:+30488941 | MS.gene51015:CDS |
| CATATGATATATCTCCTATG+TGG | 0.598865 | 3.2:-30491604 | None:intergenic |
| GGACCAATTCACAGCTCAAG+TGG | 0.602125 | 3.2:+30491649 | MS.gene51015:CDS |
| ATTATGCTGAGAGACAGCTT+CGG | 0.603893 | 3.2:+30489368 | MS.gene51015:CDS |
| GTGTTTCAGGCTGAGCGTGA+TGG | 0.617521 | 3.2:+30491494 | MS.gene51015:intron |
| ATCCTCGATAAGCCGGTCAG+CGG | 0.619038 | 3.2:-30491558 | None:intergenic |
| AAGACACACCTTAGAACGCA+AGG | 0.620639 | 3.2:-30492323 | None:intergenic |
| GGTCACTTAACACCGCTGAC+CGG | 0.621618 | 3.2:+30491546 | MS.gene51015:CDS |
| CGGTGTTAAGTGACCCAGGT+TGG | 0.628816 | 3.2:-30491538 | None:intergenic |
| AGGAATGGTATACAATGTTG+AGG | 0.647746 | 3.2:+30488873 | MS.gene51015:CDS |
| GATTATGCAGCAGATTGATG+AGG | 0.648715 | 3.2:+30489390 | MS.gene51015:CDS |
| TTGAAGTATACTAATGCTGG+TGG | 0.649143 | 3.2:+30488944 | MS.gene51015:CDS |
| AGTATAGCAACTACCAACCT+GGG | 0.650475 | 3.2:+30491525 | MS.gene51015:CDS |
| TCAGCGGTGTTAAGTGACCC+AGG | 0.658578 | 3.2:-30491542 | None:intergenic |
| AAACGGATACATCTCACAGT+GGG | 0.685499 | 3.2:+30491628 | MS.gene51015:CDS |
| CAAACGGATACATCTCACAG+TGG | 0.769986 | 3.2:+30491627 | MS.gene51015:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATAATAATTTAAGAAAT+TGG | + | chr3.2:30489556-30489575 | MS.gene51015:intron | 10.0% |
| !!! | GAAATTTTAATTATGTTTAT+AGG | + | chr3.2:30488643-30488662 | MS.gene51015:intron | 10.0% |
| !!! | TATACTTGTTAATATTTTAA+AGG | - | chr3.2:30492051-30492070 | None:intergenic | 10.0% |
| !! | ACTTAATTCATTTAATGAAT+AGG | - | chr3.2:30488755-30488774 | None:intergenic | 15.0% |
| !! | ATTTAACTGTATCTATTTAT+CGG | - | chr3.2:30489039-30489058 | None:intergenic | 15.0% |
| !! | TATTATCGAATAATAATGTT+TGG | - | chr3.2:30491935-30491954 | None:intergenic | 15.0% |
| !! | TTAAAAATATCTTTGTGATT+TGG | + | chr3.2:30489138-30489157 | MS.gene51015:intron | 15.0% |
| !!! | AACTATTTTTTTTACAATGT+CGG | + | chr3.2:30489195-30489214 | MS.gene51015:intron | 15.0% |
| !!! | AATTTTACTAAGTTAAAGTA+AGG | - | chr3.2:30490744-30490763 | None:intergenic | 15.0% |
| !!! | ATTTATTGTTTTATACAGAA+TGG | + | chr3.2:30488799-30488818 | MS.gene51015:intron | 15.0% |
| !!! | TCTAATATTCTTTTATTCAA+TGG | - | chr3.2:30491347-30491366 | None:intergenic | 15.0% |
| !! | ATAAATAAAAGAAAGTGAAG+AGG | - | chr3.2:30488372-30488391 | None:intergenic | 20.0% |
| !! | ATTAATTTCATGTTATACTG+TGG | + | chr3.2:30488406-30488425 | MS.gene51015:intron | 20.0% |
| !! | ATTATTGCTTATTGGAAAAA+AGG | - | chr3.2:30490531-30490550 | None:intergenic | 20.0% |
| !! | ATTCAATGGATGATATATAA+TGG | - | chr3.2:30491333-30491352 | None:intergenic | 20.0% |
| !! | GATAAATAGATACAGTTAAA+TGG | + | chr3.2:30489038-30489057 | MS.gene51015:intron | 20.0% |
| !! | GATTAAGTTTAACTAAAGTT+AGG | - | chr3.2:30492089-30492108 | None:intergenic | 20.0% |
| !! | TAAATAAAAGAAAGTGAAGA+GGG | - | chr3.2:30488371-30488390 | None:intergenic | 20.0% |
| !! | TGAAAATTATTGTACTAAGA+CGG | - | chr3.2:30488780-30488799 | None:intergenic | 20.0% |
| !! | TTAATTTCATGTTATACTGT+GGG | + | chr3.2:30488407-30488426 | MS.gene51015:intron | 20.0% |
| !! | TTCAATGGATGATATATAAT+GGG | - | chr3.2:30491332-30491351 | None:intergenic | 20.0% |
| !! | TTTCTATATTTGTTTGATGA+AGG | + | chr3.2:30491758-30491777 | MS.gene51015:intron | 20.0% |
| !!! | ACAGTAGAATATCTTATTTT+AGG | - | chr3.2:30492123-30492142 | None:intergenic | 20.0% |
| !!! | ATAATTGAAGACATTGATTT+TGG | - | chr3.2:30489840-30489859 | None:intergenic | 20.0% |
| !!! | CTTTTACTTGTTTTAATTTG+TGG | + | chr3.2:30488554-30488573 | MS.gene51015:intron | 20.0% |
| !!! | GCTTAGTTTTTTTTGTATAT+AGG | + | chr3.2:30489667-30489686 | MS.gene51015:intron | 20.0% |
| !!! | TAAAATGGATTATTGCTTAT+TGG | - | chr3.2:30490539-30490558 | None:intergenic | 20.0% |
| ! | AAAGAATTAAGATCTCATCA+AGG | - | chr3.2:30490101-30490120 | None:intergenic | 25.0% |
| ! | AAATCAATATCAATGGTCAA+CGG | - | chr3.2:30490849-30490868 | None:intergenic | 25.0% |
| ! | ACATAAAACTTTCAACATTG+TGG | + | chr3.2:30491082-30491101 | MS.gene51015:intron | 25.0% |
| ! | ACCAAGTAAGAATAATAAAC+AGG | - | chr3.2:30491966-30491985 | None:intergenic | 25.0% |
| ! | ACCTATAGATGAATCAATAT+TGG | + | chr3.2:30491288-30491307 | MS.gene51015:intron | 25.0% |
| ! | AGATCTTTATTAAGATGCAT+AGG | + | chr3.2:30489341-30489360 | MS.gene51015:CDS | 25.0% |
| ! | ATACATTACTTGAAATTTGC+AGG | - | chr3.2:30490912-30490931 | None:intergenic | 25.0% |
| ! | ATATGCACATGTAGTTAATT+TGG | + | chr3.2:30491000-30491019 | MS.gene51015:intron | 25.0% |
| ! | ATATTTGTTTGATGAAGGTT+TGG | + | chr3.2:30491763-30491782 | MS.gene51015:intron | 25.0% |
| ! | ATCAGGAAAATCAATATCAA+TGG | - | chr3.2:30490856-30490875 | None:intergenic | 25.0% |
| ! | CAAGGAGACAATAATAATTA+AGG | - | chr3.2:30489758-30489777 | None:intergenic | 25.0% |
| ! | GAAATCAGAGATTGAAATTA+TGG | - | chr3.2:30490177-30490196 | None:intergenic | 25.0% |
| ! | TATCGAATAATAATGTTTGG+TGG | - | chr3.2:30491932-30491951 | None:intergenic | 25.0% |
| ! | TCCTGTTTATTATTCTTACT+TGG | + | chr3.2:30491962-30491981 | MS.gene51015:intron | 25.0% |
| !! | AAAATATCTTTGTGATTTGG+TGG | + | chr3.2:30489141-30489160 | MS.gene51015:intron | 25.0% |
| !! | ACTTTTAACGATAACATTTG+AGG | + | chr3.2:30491867-30491886 | MS.gene51015:intron | 25.0% |
| !! | AGTCAATATTCAGGTTATTA+TGG | - | chr3.2:30491034-30491053 | None:intergenic | 25.0% |
| !! | ATCAGATTGATAGTTCTTAT+TGG | - | chr3.2:30489101-30489120 | None:intergenic | 25.0% |
| !! | CAAGTACTATCTTTATTTGT+AGG | + | chr3.2:30490256-30490275 | MS.gene51015:intron | 25.0% |
| !! | TCCTAAAAGTCTAAAACAAA+TGG | + | chr3.2:30491232-30491251 | MS.gene51015:intron | 25.0% |
| !!! | AACTATTTTTTGAACACTGA+TGG | + | chr3.2:30488488-30488507 | MS.gene51015:intron | 25.0% |
| !!! | AATATTGATTCATCTATAGG+TGG | - | chr3.2:30491289-30491308 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTAATTTGTGGTA+TGG | + | chr3.2:30488559-30488578 | MS.gene51015:intron | 25.0% |
| !!! | ATGTTGGTTTTGTGTTTTTT+AGG | + | chr3.2:30489302-30489321 | MS.gene51015:intron | 25.0% |
| !!! | TATTTTTTTTACAATGTCGG+TGG | + | chr3.2:30489198-30489217 | MS.gene51015:intron | 25.0% |
| !!! | TGGTGCTAATTTTTGAAAAA+AGG | + | chr3.2:30491102-30491121 | MS.gene51015:intron | 25.0% |
| !!! | TTGTTTCTATCTACAATTTG+AGG | - | chr3.2:30490596-30490615 | None:intergenic | 25.0% |
| !!! | TTTAATTTGTGGTATGGAAA+TGG | + | chr3.2:30488565-30488584 | MS.gene51015:intron | 25.0% |
| !!! | TTTCAGATTTTGCTGTTATT+TGG | + | chr3.2:30490132-30490151 | MS.gene51015:intron | 25.0% |
| !!! | TTTTTTCTTGGGTAGTTAAA+TGG | + | chr3.2:30488590-30488609 | MS.gene51015:intron | 25.0% |
| AAGATTGATTAGTGTTAGCA+GGG | + | chr3.2:30490697-30490716 | MS.gene51015:intron | 30.0% | |
| ATCTCGAAAGTTTGAACTAT+TGG | + | chr3.2:30488668-30488687 | MS.gene51015:intron | 30.0% | |
| ATCTGTATTCACTTTATCTG+AGG | + | chr3.2:30490489-30490508 | MS.gene51015:intron | 30.0% | |
| ATGTACAATGAAAACAAACC+TGG | - | chr3.2:30491708-30491727 | None:intergenic | 30.0% | |
| ATTTGAGGACACTTTCATTT+AGG | + | chr3.2:30491882-30491901 | MS.gene51015:intron | 30.0% | |
| CATATGATATATCTCCTATG+TGG | - | chr3.2:30491607-30491626 | None:intergenic | 30.0% | |
| GACTATTCAAGTCAATATTC+AGG | - | chr3.2:30491043-30491062 | None:intergenic | 30.0% | |
| GGAGATATATCATATGCAAA+CGG | + | chr3.2:30491611-30491630 | MS.gene51015:CDS | 30.0% | |
| GTGAATACAGATAAATTCAG+TGG | - | chr3.2:30490481-30490500 | None:intergenic | 30.0% | |
| TAAAGTTAGGAACAACACTT+TGG | - | chr3.2:30492076-30492095 | None:intergenic | 30.0% | |
| TAAATGGAACAATAGAGACA+AGG | + | chr3.2:30488606-30488625 | MS.gene51015:intron | 30.0% | |
| TAACACTAATCAATCTTGCA+TGG | - | chr3.2:30490694-30490713 | None:intergenic | 30.0% | |
| TAGCTAATTGTTTCGATCTA+TGG | + | chr3.2:30488272-30488291 | MS.gene51015:CDS | 30.0% | |
| TATGTCCTCATTCTTTGTAT+AGG | + | chr3.2:30490002-30490021 | MS.gene51015:intron | 30.0% | |
| TCAAACCTATACAAAGAATG+AGG | - | chr3.2:30490010-30490029 | None:intergenic | 30.0% | |
| TCAGTTCAGTCAAACTAAAA+TGG | - | chr3.2:30490554-30490573 | None:intergenic | 30.0% | |
| TCTATTGCTTAATGTGTTTC+AGG | + | chr3.2:30491481-30491500 | MS.gene51015:intron | 30.0% | |
| TGAAAAAAGGACTAGATTGA+CGG | + | chr3.2:30491115-30491134 | MS.gene51015:intron | 30.0% | |
| TTGGACACTAATATGTTGAA+CGG | + | chr3.2:30489602-30489621 | MS.gene51015:intron | 30.0% | |
| ! | AAAGATAGTACTTGCTAGAA+GGG | - | chr3.2:30490250-30490269 | None:intergenic | 30.0% |
| ! | ATAGACATTGTTTTCCACAT+AGG | + | chr3.2:30491590-30491609 | MS.gene51015:CDS | 30.0% |
| ! | CAATATTCAGGTTATTATGG+CGG | - | chr3.2:30491031-30491050 | None:intergenic | 30.0% |
| ! | GATTATCTTTTTGCATGAAC+AGG | + | chr3.2:30488907-30488926 | MS.gene51015:CDS | 30.0% |
| ! | TAAAGATAGTACTTGCTAGA+AGG | - | chr3.2:30490251-30490270 | None:intergenic | 30.0% |
| ! | TTGTACATGACTTGTAACAA+TGG | + | chr3.2:30491720-30491739 | MS.gene51015:intron | 30.0% |
| ! | TTTTTAAATCCTCGATAAGC+CGG | - | chr3.2:30491568-30491587 | None:intergenic | 30.0% |
| !! | GACATGTATTAAGCTGATTT+TGG | + | chr3.2:30490040-30490059 | MS.gene51015:intron | 30.0% |
| !! | GCCAATATTGATTCATCTAT+AGG | - | chr3.2:30491292-30491311 | None:intergenic | 30.0% |
| !! | TTGATAATGATGATGAGAAG+AGG | + | chr3.2:30489255-30489274 | MS.gene51015:intron | 30.0% |
| !!! | ATGGAAATGGAGTTTTTTCT+TGG | + | chr3.2:30488578-30488597 | MS.gene51015:intron | 30.0% |
| !!! | GCCATTTGTTTTAGACTTTT+AGG | - | chr3.2:30491236-30491255 | None:intergenic | 30.0% |
| !!! | TGGAAATGGAGTTTTTTCTT+GGG | + | chr3.2:30488579-30488598 | MS.gene51015:intron | 30.0% |
| AAAGGTCAAATCTAGAGGAA+TGG | + | chr3.2:30488858-30488877 | MS.gene51015:CDS | 35.0% | |
| ACAAACCTGGCAATCATATA+TGG | - | chr3.2:30491695-30491714 | None:intergenic | 35.0% | |
| AGAAATTGGAAGTGATCGAA+TGG | + | chr3.2:30489570-30489589 | MS.gene51015:intron | 35.0% | |
| AGATACAACCGGTAAAAACA+CGG | - | chr3.2:30492295-30492314 | None:intergenic | 35.0% | |
| AGGAATGGTATACAATGTTG+AGG | + | chr3.2:30488873-30488892 | MS.gene51015:CDS | 35.0% | |
| ATCCTACAATTGCAGAACAT+AGG | - | chr3.2:30489817-30489836 | None:intergenic | 35.0% | |
| CAAGATTGATTAGTGTTAGC+AGG | + | chr3.2:30490696-30490715 | MS.gene51015:intron | 35.0% | |
| CTAGCAAGAAGCTTCTATAT+AGG | + | chr3.2:30490655-30490674 | MS.gene51015:intron | 35.0% | |
| CTTGTCTATGTTTGCATCTA+TGG | + | chr3.2:30488441-30488460 | MS.gene51015:intron | 35.0% | |
| GAAACAATTCCCAAACTTGT+AGG | + | chr3.2:30490609-30490628 | MS.gene51015:intron | 35.0% | |
| GAGGAACATTAGTAAACAAG+AGG | - | chr3.2:30490577-30490596 | None:intergenic | 35.0% | |
| GTGGAATACAAGATGATCAT+TGG | + | chr3.2:30489160-30489179 | MS.gene51015:intron | 35.0% | |
| TCACCAAGATGAAATTAGCA+AGG | - | chr3.2:30489776-30489795 | None:intergenic | 35.0% | |
| TCTCCTTGCTAATTTCATCT+TGG | + | chr3.2:30489770-30489789 | MS.gene51015:intron | 35.0% | |
| TTCCTATGTTCTGCAATTGT+AGG | + | chr3.2:30489812-30489831 | MS.gene51015:intron | 35.0% | |
| TTGAAGTATACTAATGCTGG+TGG | + | chr3.2:30488944-30488963 | MS.gene51015:CDS | 35.0% | |
| ! | AACACTGATGGTAGTGAATT+TGG | + | chr3.2:30488500-30488519 | MS.gene51015:intron | 35.0% |
| ! | ACACTGATGGTAGTGAATTT+GGG | + | chr3.2:30488501-30488520 | MS.gene51015:intron | 35.0% |
| ! | AGAGGAAGTGTACATATCAA+TGG | - | chr3.2:30488341-30488360 | None:intergenic | 35.0% |
| ! | AGTTTCAGAGATCTGAAATG+AGG | + | chr3.2:30490376-30490395 | MS.gene51015:intron | 35.0% |
| ! | ATTGACGGACGTTTGATTTA+AGG | + | chr3.2:30491130-30491149 | MS.gene51015:intron | 35.0% |
| ! | TGTTGTGTGCTTTGATTTCA+GGG | + | chr3.2:30490803-30490822 | MS.gene51015:intron | 35.0% |
| ! | TTGTTGTGTGCTTTGATTTC+AGG | + | chr3.2:30490802-30490821 | MS.gene51015:intron | 35.0% |
| !! | TGATCCATCTGTTGATGATT+GGG | + | chr3.2:30490872-30490891 | MS.gene51015:intron | 35.0% |
| !!! | GCTTTTTTGGTGTTTAAGTG+CGG | + | chr3.2:30492180-30492199 | MS.gene51015:intron | 35.0% |
| AAACGGATACATCTCACAGT+GGG | + | chr3.2:30491628-30491647 | MS.gene51015:CDS | 40.0% | |
| ACAGAATGGAATCAGCATAC+AGG | + | chr3.2:30488813-30488832 | MS.gene51015:intron | 40.0% | |
| AGGAAGCAAACAGATACAAC+CGG | - | chr3.2:30492306-30492325 | None:intergenic | 40.0% | |
| AGTATAGCAACTACCAACCT+GGG | + | chr3.2:30491525-30491544 | MS.gene51015:CDS | 40.0% | |
| ATGGAACAATAGAGACAAGG+AGG | + | chr3.2:30488609-30488628 | MS.gene51015:intron | 40.0% | |
| ATTATGCTGAGAGACAGCTT+CGG | + | chr3.2:30489368-30489387 | MS.gene51015:CDS | 40.0% | |
| CAATCATCAACAGATGGATC+AGG | - | chr3.2:30490873-30490892 | None:intergenic | 40.0% | |
| CAGAATGGAATCAGCATACA+GGG | + | chr3.2:30488814-30488833 | MS.gene51015:intron | 40.0% | |
| CTATAACAACTACCAAAGCC+CGG | - | chr3.2:30492231-30492250 | None:intergenic | 40.0% | |
| GAGAGAAAGGTCAAATCTAG+AGG | + | chr3.2:30488853-30488872 | MS.gene51015:CDS | 40.0% | |
| GATTATGCAGCAGATTGATG+AGG | + | chr3.2:30489390-30489409 | MS.gene51015:CDS | 40.0% | |
| GCGTTGAAGTATACTAATGC+TGG | + | chr3.2:30488941-30488960 | MS.gene51015:CDS | 40.0% | |
| GGTTAAGAGAGAAGAGAGAA+AGG | + | chr3.2:30488840-30488859 | MS.gene51015:CDS | 40.0% | |
| GTTTGGAAGTGATTGGATGT+TGG | + | chr3.2:30489286-30489305 | MS.gene51015:intron | 40.0% | |
| TACTAATGCTGGTGGAATCA+TGG | + | chr3.2:30488952-30488971 | MS.gene51015:CDS | 40.0% | |
| TCAGGGTGAAGATACTCAAT+GGG | + | chr3.2:30490820-30490839 | MS.gene51015:intron | 40.0% | |
| TGGAACAATAGAGACAAGGA+GGG | + | chr3.2:30488610-30488629 | MS.gene51015:intron | 40.0% | |
| TGTTGTCAAAACAACTCAGC+TGG | + | chr3.2:30492158-30492177 | MS.gene51015:intron | 40.0% | |
| TTACTCAGCTTGCAAATGCT+TGG | + | chr3.2:30489422-30489441 | MS.gene51015:CDS | 40.0% | |
| TTCAGGGTGAAGATACTCAA+TGG | + | chr3.2:30490819-30490838 | MS.gene51015:intron | 40.0% | |
| ! | AATGGATTCCTGAACTTCCT+CGG | - | chr3.2:30488323-30488342 | None:intergenic | 40.0% |
| ! | ACAAGAGAGGAGCACATATT+AGG | + | chr3.2:30490063-30490082 | MS.gene51015:intron | 40.0% |
| ! | ACGCTGACAGTTTGTTCAAA+AGG | - | chr3.2:30490289-30490308 | None:intergenic | 40.0% |
| ! | TGCAAATGCTTGGCTTGATT+TGG | + | chr3.2:30489432-30489451 | MS.gene51015:CDS | 40.0% |
| !! | AAGCTGATTTTGGACAAGAG+AGG | + | chr3.2:30490050-30490069 | MS.gene51015:intron | 40.0% |
| !! | AGGAATCACCGTGTTTTTAC+CGG | + | chr3.2:30492284-30492303 | MS.gene51015:CDS | 40.0% |
| !! | CTGATCCATCTGTTGATGAT+TGG | + | chr3.2:30490871-30490890 | MS.gene51015:intron | 40.0% |
| !! | TATGGTGCTGTTGATGCAAT+TGG | - | chr3.2:30491677-30491696 | None:intergenic | 40.0% |
| !!! | AACAACTCAGCTGGCTTTTT+TGG | + | chr3.2:30492167-30492186 | MS.gene51015:intron | 40.0% |
| AAGACACACCTTAGAACGCA+AGG | - | chr3.2:30492326-30492345 | None:intergenic | 45.0% | |
| AGTGAAGAGGGTTTGAAGAG+AGG | - | chr3.2:30488359-30488378 | None:intergenic | 45.0% | |
| ATGATGAGAAGAGGATGCGA+GGG | + | chr3.2:30489264-30489283 | MS.gene51015:intron | 45.0% | |
| CAAACGGATACATCTCACAG+TGG | + | chr3.2:30491627-30491646 | MS.gene51015:CDS | 45.0% | |
| CAGCACCATATATGATTGCC+AGG | + | chr3.2:30491687-30491706 | MS.gene51015:CDS | 45.0% | |
| CCAACCCAATCATCAACAGA+TGG | - | chr3.2:30490879-30490898 | None:intergenic | 45.0% | |
| CTTGCTAGAAGGGAAGCTAT+TGG | - | chr3.2:30490240-30490259 | None:intergenic | 45.0% | |
| GAGTATAGCAACTACCAACC+TGG | + | chr3.2:30491524-30491543 | MS.gene51015:CDS | 45.0% | |
| GATCGAATGGATCAGCATGT+TGG | + | chr3.2:30489583-30489602 | MS.gene51015:intron | 45.0% | |
| GCAGCTGATCCTACAAGTTT+GGG | - | chr3.2:30490621-30490640 | None:intergenic | 45.0% | |
| GTTCCACTTGAGCTGTGAAT+TGG | - | chr3.2:30491655-30491674 | None:intergenic | 45.0% | |
| GTTTGCTTCCTTGCGTTCTA+AGG | + | chr3.2:30492315-30492334 | MS.gene51015:CDS | 45.0% | |
| TGCAGCTGATCCTACAAGTT+TGG | - | chr3.2:30490622-30490641 | None:intergenic | 45.0% | |
| !! | ACAATGTTGAGGCTTGTTGC+TGG | + | chr3.2:30488884-30488903 | MS.gene51015:CDS | 45.0% |
| !! | CAATGTTGAGGCTTGTTGCT+GGG | + | chr3.2:30488885-30488904 | MS.gene51015:CDS | 45.0% |
| !! | CCATCTGTTGATGATTGGGT+TGG | + | chr3.2:30490876-30490895 | MS.gene51015:intron | 45.0% |
| !! | TATATATATATATAAAGTTA+TGG | + | chr3.2:30489931-30489950 | MS.gene51015:intron | 5.0% |
| !!! | TTTTTTTTTTTATGAATTTT+TGG | + | chr3.2:30491813-30491832 | MS.gene51015:intron | 5.0% |
| GATGATGAGAAGAGGATGCG+AGG | + | chr3.2:30489263-30489282 | MS.gene51015:intron | 50.0% | |
| GGACCAATTCACAGCTCAAG+TGG | + | chr3.2:30491649-30491668 | MS.gene51015:CDS | 50.0% | |
| TGCGAGGGTTTGGAAGTGAT+TGG | + | chr3.2:30489279-30489298 | MS.gene51015:intron | 50.0% | |
| TGGAATCAGCATACAGGGCA+TGG | + | chr3.2:30488819-30488838 | MS.gene51015:CDS | 50.0% | |
| TTCTTTCTTCTCTGCAGCCG+AGG | + | chr3.2:30488303-30488322 | MS.gene51015:CDS | 50.0% | |
| !! | TGCTTGGCTTGATTTGGCTG+TGG | + | chr3.2:30489438-30489457 | MS.gene51015:CDS | 50.0% |
| ATCCTCGATAAGCCGGTCAG+CGG | - | chr3.2:30491561-30491580 | None:intergenic | 55.0% | |
| GAGAAGAGGATGCGAGGGTT+TGG | + | chr3.2:30489269-30489288 | MS.gene51015:intron | 55.0% | |
| GGTCACTTAACACCGCTGAC+CGG | + | chr3.2:30491546-30491565 | MS.gene51015:CDS | 55.0% | |
| GTGTTTCAGGCTGAGCGTGA+TGG | + | chr3.2:30491494-30491513 | MS.gene51015:intron | 55.0% | |
| ! | CGGTGTTAAGTGACCCAGGT+TGG | - | chr3.2:30491541-30491560 | None:intergenic | 55.0% |
| ! | TCAGCGGTGTTAAGTGACCC+AGG | - | chr3.2:30491545-30491564 | None:intergenic | 55.0% |
| CTCTGCAGCCGAGGAAGTTC+AGG | + | chr3.2:30488312-30488331 | MS.gene51015:CDS | 60.0% | |
| CTACCAAAGCCCGGCAGCAG+CGG | - | chr3.2:30492222-30492241 | None:intergenic | 65.0% | |
| TTGTGCCTGTCCGCTGCTGC+CGG | + | chr3.2:30492209-30492228 | MS.gene51015:CDS | 65.0% | |
| ! | CACCGCTGACCGGCTTATCG+AGG | + | chr3.2:30491556-30491575 | MS.gene51015:CDS | 65.0% |
| AAAGCCCGGCAGCAGCGGAC+AGG | - | chr3.2:30492217-30492236 | None:intergenic | 70.0% | |
| TGTCCGCTGCTGCCGGGCTT+TGG | + | chr3.2:30492216-30492235 | MS.gene51015:CDS | 70.0% | |
| TGTGCCTGTCCGCTGCTGCC+GGG | + | chr3.2:30492210-30492229 | MS.gene51015:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 30488265 | 30492363 | 30488265 | ID=MS.gene51015 |
| chr3.2 | mRNA | 30488265 | 30492363 | 30488265 | ID=MS.gene51015.t1;Parent=MS.gene51015 |
| chr3.2 | exon | 30488265 | 30488347 | 30488265 | ID=MS.gene51015.t1.exon1;Parent=MS.gene51015.t1 |
| chr3.2 | CDS | 30488265 | 30488347 | 30488265 | ID=cds.MS.gene51015.t1;Parent=MS.gene51015.t1 |
| chr3.2 | exon | 30488817 | 30488978 | 30488817 | ID=MS.gene51015.t1.exon2;Parent=MS.gene51015.t1 |
| chr3.2 | CDS | 30488817 | 30488978 | 30488817 | ID=cds.MS.gene51015.t1;Parent=MS.gene51015.t1 |
| chr3.2 | exon | 30489324 | 30489459 | 30489324 | ID=MS.gene51015.t1.exon3;Parent=MS.gene51015.t1 |
| chr3.2 | CDS | 30489324 | 30489459 | 30489324 | ID=cds.MS.gene51015.t1;Parent=MS.gene51015.t1 |
| chr3.2 | exon | 30491503 | 30491708 | 30491503 | ID=MS.gene51015.t1.exon4;Parent=MS.gene51015.t1 |
| chr3.2 | CDS | 30491503 | 30491708 | 30491503 | ID=cds.MS.gene51015.t1;Parent=MS.gene51015.t1 |
| chr3.2 | exon | 30492198 | 30492363 | 30492198 | ID=MS.gene51015.t1.exon5;Parent=MS.gene51015.t1 |
| chr3.2 | CDS | 30492198 | 30492363 | 30492198 | ID=cds.MS.gene51015.t1;Parent=MS.gene51015.t1 |
| Gene Sequence |
| Protein sequence |
