AlfalfaGEDB | MS.gene51113

M. sativa cultivar XinJiangDaYe / MS.gene51113

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51113.t1	XP_003616743.2	98.7	155	2	0	1	155	25	179	7.10E-74	286.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51113.t1	G7K7C1	98.7	155	2	0	1	155	25	179	5.1e-74	286.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054473	MS.gene51113	0.802501	5.44E-49	-1.69E-46
MS.gene055277	MS.gene51113	0.802915	4.47E-49	-1.69E-46
MS.gene055428	MS.gene51113	0.80824	3.41E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51113.t1	MTR_5g083810	98.710	155	2	0	1	155	25	179	4.48e-110	310
MS.gene51113.t1	MTR_3g466150	46.835	158	82	1	1	156	1	158	5.24e-46	147
MS.gene51113.t1	MTR_7g072470	58.537	123	50	1	27	149	6	127	3.67e-43	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51113.t1	AT2G40435	64.103	156	54	2	1	155	1	155	5.38e-68	203
MS.gene51113.t1	AT3G56220	57.419	155	63	3	1	153	1	154	1.29e-57	177
MS.gene51113.t1	AT2G40435	64.341	129	45	1	1	128	1	129	5.97e-56	172
MS.gene51113.t1	AT2G40435	65.354	127	43	1	1	126	1	127	6.67e-56	172
MS.gene51113.t1	AT3G56220	57.364	129	52	3	1	127	1	128	3.14e-44	142
MS.gene51113.t1	AT1G29270	35.156	128	75	5	1	123	1	125	5.42e-11	57.8

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Find 22 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTATATTGAAAATCTAA+AGG	0.516255	5.1:-65994884	MS.gene51113:CDS
ACAAGCTGTGAAACAAGCCG+TGG	0.676305	5.1:-65993608	MS.gene51113:CDS
ACAGTGGAAACCCTAGAAAA+GGG	0.541907	5.1:-65994234	MS.gene51113:CDS
AGAGATGAGGCTTACTGTGC+TGG	0.485736	5.1:-65994142	MS.gene51113:CDS
AGTAAGCCTCATCTCTTCAA+TGG	0.521158	5.1:+65994149	None:intergenic
CAAGCTGTGAAACAAGCCGT+GGG	0.688309	5.1:-65993607	MS.gene51113:CDS
CCACAATCCCAACTTGCCTA+TGG	0.504234	5.1:-65994809	MS.gene51113:intron
CCATAGGCAAGTTGGGATTG+TGG	0.527764	5.1:+65994809	None:intergenic
CTCAATTACCATAGGCAAGT+TGG	0.394555	5.1:+65994801	None:intergenic
CTTATGTAGAATGAAGAACA+AGG	0.699994	5.1:-65993646	MS.gene51113:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTAGGCACCATATATA+TGG	+	chr5.1:65995333-65995352	None:intergenic	30.0%
AATAAAAATGGACCCAAATC+AGG	+	chr5.1:65993778-65993797	None:intergenic	30.0%
AATTCTGCTGCAAGTTATTT+AGG	+	chr5.1:65994708-65994727	None:intergenic	30.0%
AGGATACACATAAACTACTA+TGG	+	chr5.1:65994095-65994114	None:intergenic	30.0%
ATTCTGCTGCAAGTTATTTA+GGG	+	chr5.1:65994707-65994726	None:intergenic	30.0%
CACATAGCTGATAAGAATAT+AGG	+	chr5.1:65994121-65994140	None:intergenic	30.0%
CTATATTCTTATCAGCTATG+TGG	-	chr5.1:65994119-65994138	MS.gene51113:CDS	30.0%
CTTATGTAGAATGAAGAACA+AGG	-	chr5.1:65995487-65995506	MS.gene51113:intron	30.0%
GCTGATAAGAATATAGGATA+AGG	+	chr5.1:65994115-65994134	None:intergenic	30.0%
TATACTCTTGTTCCTGATTT+GGG	-	chr5.1:65993763-65993782	MS.gene51113:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	65993564	65995591	65993564	ID=MS.gene51113
chr5.1	mRNA	65993564	65995591	65993564	ID=MS.gene51113.t1;Parent=MS.gene51113
chr5.1	exon	65995514	65995591	65995514	ID=MS.gene51113.t1.exon1;Parent=MS.gene51113.t1
chr5.1	CDS	65995514	65995591	65995514	ID=cds.MS.gene51113.t1;Parent=MS.gene51113.t1
chr5.1	exon	65994810	65994938	65994810	ID=MS.gene51113.t1.exon2;Parent=MS.gene51113.t1
chr5.1	CDS	65994810	65994938	65994810	ID=cds.MS.gene51113.t1;Parent=MS.gene51113.t1
chr5.1	exon	65994089	65994259	65994089	ID=MS.gene51113.t1.exon3;Parent=MS.gene51113.t1
chr5.1	CDS	65994089	65994259	65994089	ID=cds.MS.gene51113.t1;Parent=MS.gene51113.t1
chr5.1	exon	65993564	65993659	65993564	ID=MS.gene51113.t1.exon4;Parent=MS.gene51113.t1
chr5.1	CDS	65993564	65993659	65993564	ID=cds.MS.gene51113.t1;Parent=MS.gene51113.t1

Gene Sequence

>MS.gene51113

ATGGTTTCTAGGGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTGTTACTAACTCTCATGCTGTAAATATTCCCTGCATTTTCTATCTCCTATCTTTCTTTTCTTTCCATTGGATTTCTCTCCATCAATATATTCTCAATGAAATCACCCAATTCTATAAAAGAATATTCATCACACTTCTGCTATACTCTTGTTCCTGATTTGGGTCCATTTTTATTATTGGAATTAATGTTTCCAAGTTTGCTATTTTTTTATTAGTTGTTTGAATTTGAATCTTTCATGTTCTATATATATTTTCTTTCTTAATTCCTTATTAATTCATTCTTTCTGCATCGTCCACTGCCTATACTTTTATGCTCTCATCCACATGCATATCTAGGTTCAAAACTCAAGCTATTGATTATAAAAACTTGATATCAAAGATATACAGTGATAAATTTTTCATCGAAAAAAATAATATAAGTGATTGATAAGTCTCTAATTTGATATCATTTATCTTGTTAATTAACTAACCATAGTAGTTTATGTGTATCCTTATCCTATATTCTTATCAGCTATGTGGAGCTTATTTGATATGGTATATTAATAATTTTCTAATACTTTCTTCTTATGGTTTTTATGCATGGTTTGGTTGCAGCTAAATGATACCTCGATCGTAATCGATGCATCAAAGTATATTGAAAATCTAAAGGAAAAGGTAGAACGACTGAATGAAGAAATAGCTTCTGCAGAAAGTTCAAGTGTCCACAATCCCAACTTGCCTATGGTAATTGAGAAAAGTACATGAGCCCATTTATATAATTTTTTATAGAGCAAATATTTTTTATTAAGAAAGTAAAAGTACTCGATCAGAATTTGACTGCTTTTGGATAAACAATTTGGTTAATCGCTTATTGAACAAATTGTTTATTCATCTAAATTATAAGCTGTTTTCGTTAACCGTCTTGATGAAGGGCTTATGAAAATGAGCTGAAAACAACTTATAAACAATTAAACATGGCATACGTTTCCATTAGCTCGCGATATTAACAATCTCACAAGTGTAATGTTAGTAGGTAATTAAACTCCAATAAAACAATTCAAAGAGACCATCCTTGTCTATCTATCCTAAAAAAAAGTCTTGACCCTAAATAACTTGCAGCAGAATTAATTCACTTTTTTTTTTCTTGGGATCTTTAATTTCCAGTTATTGTAAACAATTTCTCATATAAATATATATATATACATACTATGTATGTTGATCATCAAGTCAATGTGTGTTCGAAGATCTTGCAAGTATGAAATTTGAAATGGATTTTATGGATGGACTTGTGCAGGTTACAGTGGAAACCCTAGAAAAGGGATTTCTTATAAACGTTTTTTCTGCAAAAAGCAGCCAAGGTATGCTTGTTTCAATACTTGAAGCCATTGAAGAGATGAGGCTTACTGTGCTGGAAGCTAGGGTTTCTTGTACAGACAATTTTTGTTTCCAAGCTGTTGGAGGAGAGGTAAGATATATACATATAGTGATCAACAAGAGAACAATTATTTGATAGTGTAAAAAATAGTTACATTTTTGCTGCATATCAATTAAATTTTCATGTTATAAGTTCAACATACGTATCATTAATCTCTCTATCTTTTTCCTTCACTTGTCAATATTTTTGTGTCACATGTTTTGTCCCTTTATATAAAAACGTTACTCATTTGGGGTTCTCGAGAAAAGGGACCGAGTTGCTGTACATTGAATCATTGATATTGGTCATGCAATCCATATATATGGTGCCTAATCTTAACCCTAATAATAATATATAGTCTTCATTTAATTGTCTACTAGGTATAGAAGCCAGCTAAGTTCATCAATAACGAATAATATATCTTGCATTTTATTTCCCATCATGCATGAGAATGACGGAAAGTTTTTGTGGCTTATGTAGAATGAAGAACAAGGTGAGACTATTGATGCACAAGCTGTGAAACAAGCCGTGGGACAAGCAATAAAAAATTGGAGTGAAAGTTCCGATCAAGTGTAA

Protein sequence

>MS.gene51113.t1

MVSREQKRAALHEKLQLLRSVTNSHALNDTSIVIDASKYIENLKEKVERLNEEIASAESSSVHNPNLPMVTVETLEKGFLINVFSAKSSQGMLVSILEAIEEMRLTVLEARVSCTDNFCFQAVGGENEEQGETIDAQAVKQAVGQAIKNWSESSDQV