Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51171.t1 | ABN05684.1 | 98.2 | 284 | 5 | 0 | 1 | 284 | 1 | 284 | 1.80E-144 | 521.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51171.t1 | A2ZE50 | 75.0 | 280 | 62 | 2 | 8 | 283 | 4 | 279 | 3.1e-108 | 392.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51171.t1 | A2Q167 | 98.2 | 284 | 5 | 0 | 1 | 284 | 1 | 284 | 1.3e-144 | 521.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05224 | MS.gene51171 | 0.812175 | 4.84E-51 | -1.69E-46 |
| MS.gene058720 | MS.gene51171 | 0.974873 | 6.29E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51171.t1 | MTR_7g079850 | 98.239 | 284 | 5 | 0 | 1 | 284 | 1 | 284 | 0.0 | 561 |
| MS.gene51171.t1 | MTR_1g111390 | 40.351 | 228 | 109 | 3 | 74 | 281 | 6 | 226 | 1.28e-51 | 169 |
| MS.gene51171.t1 | MTR_1g046730 | 41.232 | 211 | 117 | 2 | 76 | 279 | 152 | 362 | 1.82e-41 | 147 |
| MS.gene51171.t1 | MTR_5g009810 | 36.019 | 211 | 114 | 5 | 82 | 279 | 145 | 347 | 2.75e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51171.t1 | AT5G36290 | 73.852 | 283 | 62 | 5 | 13 | 283 | 11 | 293 | 2.33e-132 | 377 |
| MS.gene51171.t1 | AT5G36290 | 73.852 | 283 | 62 | 5 | 13 | 283 | 11 | 293 | 2.33e-132 | 377 |
| MS.gene51171.t1 | AT1G68650 | 43.946 | 223 | 111 | 2 | 72 | 281 | 4 | 225 | 9.43e-56 | 179 |
| MS.gene51171.t1 | AT1G25520 | 41.991 | 231 | 100 | 2 | 72 | 278 | 4 | 224 | 2.98e-55 | 178 |
| MS.gene51171.t1 | AT4G13590 | 40.741 | 216 | 111 | 4 | 76 | 279 | 146 | 356 | 1.20e-41 | 147 |
| MS.gene51171.t1 | AT4G13590 | 40.741 | 216 | 111 | 4 | 76 | 279 | 146 | 356 | 1.32e-41 | 147 |
| MS.gene51171.t1 | AT1G64150 | 34.559 | 272 | 143 | 8 | 27 | 274 | 101 | 361 | 5.66e-25 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCTTCTGTGAAGATTT+TGG | 0.120668 | 7.3:+27475649 | None:intergenic |
| TGCTTCTTTGAAATCAAATT+TGG | 0.183884 | 7.3:+27476063 | None:intergenic |
| TCTCTTAGCTTGGATTCTTC+TGG | 0.261688 | 7.3:-27477260 | MS.gene51171:CDS |
| ATTTATTATAGCAGCTCTTA+TGG | 0.317879 | 7.3:-27476359 | MS.gene51171:CDS |
| TTTATATTCATAGGATTCTC+TGG | 0.357110 | 7.3:-27477458 | MS.gene51171:intron |
| AGCTTGGATTCTTCTGGTGT+TGG | 0.387172 | 7.3:-27477254 | MS.gene51171:CDS |
| TTCGGTCATTTCTCTTAGCT+TGG | 0.388909 | 7.3:-27477270 | MS.gene51171:CDS |
| TACGACTGCTGTACATTGCT+TGG | 0.393896 | 7.3:-27475681 | MS.gene51171:CDS |
| CCTAAGTCAATTGTCTTGTC+TGG | 0.404108 | 7.3:-27476325 | MS.gene51171:CDS |
| TTACTGCAATTGTCGCAATC+TGG | 0.411024 | 7.3:+27474962 | None:intergenic |
| GTAGCAGCTGGGGCCACCAT+AGG | 0.426028 | 7.3:-27474748 | MS.gene51171:CDS |
| GTCCATTAGGTACTTTCTAC+AGG | 0.433115 | 7.3:-27476102 | MS.gene51171:intron |
| GACAAGGGAAAACTTCATTT+CGG | 0.446559 | 7.3:-27475145 | MS.gene51171:CDS |
| ATCTTCACAGAAGAAAGAAA+TGG | 0.475060 | 7.3:-27475644 | MS.gene51171:CDS |
| GTCGGTGGTCTTCTCTTCCT+AGG | 0.477783 | 7.3:-27474646 | MS.gene51171:CDS |
| GACAGTGGCTACAGAGCGTT+GGG | 0.479778 | 7.3:+27474666 | None:intergenic |
| AATGCAATCGGAGTAGCAGC+TGG | 0.484261 | 7.3:-27474760 | MS.gene51171:CDS |
| ACTTACCGTCATTATAATCA+AGG | 0.489547 | 7.3:+27476291 | None:intergenic |
| ATTCTCTGGCTCACGACGAC+AGG | 0.492028 | 7.3:-27477444 | MS.gene51171:CDS |
| GCACTACGATTCAACATCAA+TGG | 0.507707 | 7.3:-27477600 | MS.gene51171:CDS |
| CACGACGACAGGCAAGAATC+CGG | 0.512240 | 7.3:-27477433 | MS.gene51171:CDS |
| GCGTTGAATGATATAGAGAA+TGG | 0.513923 | 7.3:-27477293 | MS.gene51171:CDS |
| CATACAAATAGTGCTGCTAC+AGG | 0.516828 | 7.3:-27476042 | MS.gene51171:intron |
| TAGCAGCTGGGGCCACCATA+GGG | 0.516894 | 7.3:-27474747 | MS.gene51171:CDS |
| CGTCGTTCAAACCTTCGCTC+AGG | 0.518400 | 7.3:-27477544 | MS.gene51171:intron |
| GAGGAAGCATGCTGGCATCT+AGG | 0.521221 | 7.3:-27474693 | MS.gene51171:CDS |
| ATGAAGACAAAGAAAAGCCT+AGG | 0.528533 | 7.3:+27474629 | None:intergenic |
| ATGTACCTCAGTGGCAGTGG+TGG | 0.534768 | 7.3:-27474716 | MS.gene51171:CDS |
| CAATTGTCGCAATCTGGCTA+CGG | 0.543283 | 7.3:+27474968 | None:intergenic |
| ATGCAATCGGAGTAGCAGCT+GGG | 0.543597 | 7.3:-27474759 | MS.gene51171:CDS |
| CGACAGTGGCTACAGAGCGT+TGG | 0.546302 | 7.3:+27474665 | None:intergenic |
| TCCGGTGGATCTGTGGATCT+CGG | 0.548999 | 7.3:-27477415 | MS.gene51171:CDS |
| TTTAACATTCCTTGCTGAGT+GGG | 0.550817 | 7.3:-27474995 | MS.gene51171:CDS |
| GCAGAGGAGAAGAACGAAAA+CGG | 0.558746 | 7.3:+27477569 | None:intergenic |
| AGTGGTGGGAGGAAGCATGC+TGG | 0.559364 | 7.3:-27474701 | MS.gene51171:CDS |
| GCAAGAATCCGGTGGATCTG+TGG | 0.559609 | 7.3:-27477422 | MS.gene51171:CDS |
| ATCAATGATTCTCGTTAGTG+AGG | 0.560283 | 7.3:-27477204 | MS.gene51171:intron |
| CCAGACAAGACAATTGACTT+AGG | 0.562706 | 7.3:+27476325 | None:intergenic |
| AATATGTACCTCAGTGGCAG+TGG | 0.565729 | 7.3:-27474719 | MS.gene51171:CDS |
| CAACGCTCTGTAGCCACTGT+CGG | 0.569412 | 7.3:-27474664 | MS.gene51171:CDS |
| TAGGTACTTTCTACAGGACT+AGG | 0.570677 | 7.3:-27476096 | MS.gene51171:CDS |
| GGTACATATTGTGTGCCCTA+TGG | 0.570961 | 7.3:+27474732 | None:intergenic |
| GAATGATATAGAGAATGGTT+CGG | 0.572567 | 7.3:-27477288 | MS.gene51171:CDS |
| AGCACTTGTATTAATCTAGA+GGG | 0.573165 | 7.3:+27474596 | None:intergenic |
| AGGTTTGAACGACGAAGCAG+AGG | 0.579424 | 7.3:+27477553 | None:intergenic |
| TACGGTCACCCCACTCAGCA+AGG | 0.586363 | 7.3:+27474986 | None:intergenic |
| ACATATTGTGTGCCCTATGG+TGG | 0.588291 | 7.3:+27474735 | None:intergenic |
| ACCTCAGTGGCAGTGGTGGG+AGG | 0.588861 | 7.3:-27474712 | MS.gene51171:CDS |
| CAGCACTTGTATTAATCTAG+AGG | 0.589972 | 7.3:+27474595 | None:intergenic |
| ACCGAGATCCACAGATCCAC+CGG | 0.590630 | 7.3:+27477414 | None:intergenic |
| AAGTGCCTTGATTATAATGA+CGG | 0.591556 | 7.3:-27476296 | MS.gene51171:intron |
| CACTTGTATTAATCTAGAGG+GGG | 0.603175 | 7.3:+27474598 | None:intergenic |
| TACTTTCTACAGGACTAGGA+AGG | 0.605041 | 7.3:-27476092 | MS.gene51171:CDS |
| TTAACATTCCTTGCTGAGTG+GGG | 0.606715 | 7.3:-27474994 | MS.gene51171:CDS |
| CGCTCTGTAGCCACTGTCGG+TGG | 0.611670 | 7.3:-27474661 | MS.gene51171:CDS |
| AATGAAGCTGACCTGAGCGA+AGG | 0.623925 | 7.3:+27477533 | None:intergenic |
| TGTACCTCAGTGGCAGTGGT+GGG | 0.630607 | 7.3:-27474715 | MS.gene51171:CDS |
| TCCTCCCACCACTGCCACTG+AGG | 0.633636 | 7.3:+27474711 | None:intergenic |
| GAAGAGAAGACCACCGACAG+TGG | 0.640727 | 7.3:+27474651 | None:intergenic |
| TGCAATCGGAGTAGCAGCTG+GGG | 0.642034 | 7.3:-27474758 | MS.gene51171:CDS |
| GCACTTGTATTAATCTAGAG+GGG | 0.643990 | 7.3:+27474597 | None:intergenic |
| AAGGGAAAACTTCATTTCGG+CGG | 0.657157 | 7.3:-27475142 | MS.gene51171:CDS |
| TAGAGATGCTTACTTTGGCG+CGG | 0.657983 | 7.3:+27477389 | None:intergenic |
| ACTTGTATTAATCTAGAGGG+GGG | 0.683100 | 7.3:+27474599 | None:intergenic |
| GACGACAGGCAAGAATCCGG+TGG | 0.690791 | 7.3:-27477430 | MS.gene51171:CDS |
| GATGTTGAATCGTAGTGCCA+TGG | 0.692820 | 7.3:+27477605 | None:intergenic |
| GCACACAATATGTACCTCAG+TGG | 0.739190 | 7.3:-27474725 | MS.gene51171:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAGTATTATAAATAAAATT+AGG | + | chr7.3:27475064-27475083 | None:intergenic | 10.0% |
| !! | TACAAATAATCAAATATTTA+GGG | + | chr7.3:27477295-27477314 | None:intergenic | 10.0% |
| !! | GTACAAATAATCAAATATTT+AGG | + | chr7.3:27477296-27477315 | None:intergenic | 15.0% |
| !!! | ATACTAATTGTTATTTCAAT+TGG | - | chr7.3:27475630-27475649 | MS.gene51171:intron | 15.0% |
| !!! | TACTAATTGTTATTTCAATT+GGG | - | chr7.3:27475631-27475650 | MS.gene51171:intron | 15.0% |
| !!! | TTTGTACAAACTTTTTATAA+TGG | + | chr7.3:27475505-27475524 | None:intergenic | 15.0% |
| !! | ATGTGTTTGTTTATATTCAT+AGG | - | chr7.3:27474742-27474761 | MS.gene51171:CDS | 20.0% |
| !! | CAAATTATGCAATAAAATCA+AGG | + | chr7.3:27475115-27475134 | None:intergenic | 20.0% |
| !! | CTAATAGTTAAATATCAGTT+AGG | + | chr7.3:27475431-27475450 | None:intergenic | 20.0% |
| !! | GAATATAAACAAACACATTA+CGG | + | chr7.3:27474740-27474759 | None:intergenic | 20.0% |
| !! | TACTATAATTAACATTGTTC+TGG | - | chr7.3:27476264-27476283 | MS.gene51171:intron | 20.0% |
| !!! | ACTAATTGTTATTTCAATTG+GGG | - | chr7.3:27475632-27475651 | MS.gene51171:intron | 20.0% |
| !!! | CATTCATTATCTTGTTTTTA+TGG | - | chr7.3:27476407-27476426 | MS.gene51171:intron | 20.0% |
| !!! | TAAAAAGCATTTATAGAAAG+AGG | + | chr7.3:27475675-27475694 | None:intergenic | 20.0% |
| !!! | TTTTAGAATTTTATGTGACT+AGG | - | chr7.3:27475690-27475709 | MS.gene51171:CDS | 20.0% |
| !!! | TTTTAGTTGTAAACTATGAT+AGG | - | chr7.3:27475159-27475178 | MS.gene51171:CDS | 20.0% |
| ! | ACAACTAAAAAATTCTTCAC+TGG | + | chr7.3:27475149-27475168 | None:intergenic | 25.0% |
| ! | AGACAAAGCTATAGTATAAA+TGG | + | chr7.3:27476649-27476668 | None:intergenic | 25.0% |
| ! | ATTCAAATGAACAAAAAGAG+AGG | + | chr7.3:27474847-27474866 | None:intergenic | 25.0% |
| ! | ATTTATTATAGCAGCTCTTA+TGG | - | chr7.3:27475850-27475869 | MS.gene51171:intron | 25.0% |
| ! | ATTTGAATTGTTCATTCAAC+TGG | - | chr7.3:27474859-27474878 | MS.gene51171:intron | 25.0% |
| ! | CAAGATAATGAATGAAGATT+TGG | + | chr7.3:27476401-27476420 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGGTAAAATTAT+CGG | - | chr7.3:27475385-27475404 | MS.gene51171:intron | 25.0% |
| ! | TATAGCATGTTTACAATTAC+AGG | + | chr7.3:27476924-27476943 | None:intergenic | 25.0% |
| ! | TGAATTGAATTTGTAGTGTT+TGG | - | chr7.3:27475373-27475392 | MS.gene51171:intron | 25.0% |
| ! | TTAAAGAAAAGAGTCAAACT+TGG | - | chr7.3:27476988-27477007 | MS.gene51171:intron | 25.0% |
| ! | TTTATATTCATAGGATTCTC+TGG | - | chr7.3:27474751-27474770 | MS.gene51171:CDS | 25.0% |
| !! | AGAATTTGTTCTTGTTAACT+AGG | - | chr7.3:27477020-27477039 | MS.gene51171:intron | 25.0% |
| !! | GTCATTACCTCTAAAAATAT+GGG | + | chr7.3:27477114-27477133 | None:intergenic | 25.0% |
| !! | TAATATAGAGCACTATTTCT+TGG | - | chr7.3:27476033-27476052 | MS.gene51171:intron | 25.0% |
| !! | TGTCATTACCTCTAAAAATA+TGG | + | chr7.3:27477115-27477134 | None:intergenic | 25.0% |
| !!! | TGCTTCTTTGAAATCAAATT+TGG | + | chr7.3:27476149-27476168 | None:intergenic | 25.0% |
| AAGTGCCTTGATTATAATGA+CGG | - | chr7.3:27475913-27475932 | MS.gene51171:intron | 30.0% | |
| AAGTTCTTATGAGCTTGTAA+AGG | - | chr7.3:27475527-27475546 | MS.gene51171:intron | 30.0% | |
| ACTTACCGTCATTATAATCA+AGG | + | chr7.3:27475921-27475940 | None:intergenic | 30.0% | |
| ATCTTCACAGAAGAAAGAAA+TGG | - | chr7.3:27476565-27476584 | MS.gene51171:intron | 30.0% | |
| ATTAATGAGAACAGAAAAGC+AGG | + | chr7.3:27475972-27475991 | None:intergenic | 30.0% | |
| GAATGATATAGAGAATGGTT+CGG | - | chr7.3:27474921-27474940 | MS.gene51171:intron | 30.0% | |
| GCAACACATAAAAATGCAAT+CGG | - | chr7.3:27477437-27477456 | MS.gene51171:CDS | 30.0% | |
| GCGTATGACAAAAAAATGAT+AGG | + | chr7.3:27476485-27476504 | None:intergenic | 30.0% | |
| GTTATTTGTTTGTGTCCATT+AGG | - | chr7.3:27476094-27476113 | MS.gene51171:CDS | 30.0% | |
| TAACCACCGACAAAAATTAA+AGG | + | chr7.3:27477354-27477373 | None:intergenic | 30.0% | |
| TAATATAGATGCAACTCTTC+AGG | - | chr7.3:27476821-27476840 | MS.gene51171:intron | 30.0% | |
| TATAAACAAACACATTACGG+CGG | + | chr7.3:27474737-27474756 | None:intergenic | 30.0% | |
| TCAAGTTCCTTTATTCTAGA+TGG | - | chr7.3:27476698-27476717 | MS.gene51171:intron | 30.0% | |
| TCTATTCTATGTTTGCGTTA+TGG | - | chr7.3:27475783-27475802 | MS.gene51171:intron | 30.0% | |
| TTTATGGAAAGAAAACGACT+AGG | - | chr7.3:27475260-27475279 | MS.gene51171:intron | 30.0% | |
| ! | AAAAGTACATGGAGTTAAAC+AGG | + | chr7.3:27476294-27476313 | None:intergenic | 30.0% |
| ! | AAACGTGTAACAAAAGTACA+TGG | + | chr7.3:27476305-27476324 | None:intergenic | 30.0% |
| ! | AAATGTGCCATCTAGAATAA+AGG | + | chr7.3:27476708-27476727 | None:intergenic | 30.0% |
| ! | ATCTAGAATAAAGGAACTTG+AGG | + | chr7.3:27476699-27476718 | None:intergenic | 30.0% |
| ! | CAGTTCTTTATCTTTTCTTC+GGG | - | chr7.3:27476504-27476523 | MS.gene51171:intron | 30.0% |
| ! | GCAGTTCTTTATCTTTTCTT+CGG | - | chr7.3:27476503-27476522 | MS.gene51171:intron | 30.0% |
| ! | TAGGTTGAAGAAAAACTTGA+AGG | - | chr7.3:27477039-27477058 | MS.gene51171:intron | 30.0% |
| ! | TCTTTCTTCTGTGAAGATTT+TGG | + | chr7.3:27476563-27476582 | None:intergenic | 30.0% |
| ! | TGCTTTTCTGTTCTCATTAA+TGG | - | chr7.3:27475971-27475990 | MS.gene51171:intron | 30.0% |
| !! | ATTGTTGATGACACATTAGT+TGG | - | chr7.3:27476959-27476978 | MS.gene51171:intron | 30.0% |
| !!! | AACCTTTTTTCATGCTAGAT+TGG | - | chr7.3:27475818-27475837 | MS.gene51171:intron | 30.0% |
| !!! | ACCTTTTTTCATGCTAGATT+GGG | - | chr7.3:27475819-27475838 | MS.gene51171:intron | 30.0% |
| !!! | TTGTACACCCATATTTTTAG+AGG | - | chr7.3:27477104-27477123 | MS.gene51171:intron | 30.0% |
| !!! | TTTTTTACATTGTGCTGTGA+TGG | - | chr7.3:27475998-27476017 | MS.gene51171:intron | 30.0% |
| AAAAACTTGAAGGTGGACAA+GGG | - | chr7.3:27477049-27477068 | MS.gene51171:intron | 35.0% | |
| AAATGGAGAGAATTGAACTG+TGG | + | chr7.3:27476632-27476651 | None:intergenic | 35.0% | |
| AACAGTTACTGTATTTGTGC+TGG | - | chr7.3:27476732-27476751 | MS.gene51171:intron | 35.0% | |
| ACATATTTAAACAGCCATCG+AGG | + | chr7.3:27476786-27476805 | None:intergenic | 35.0% | |
| AGCATGACGAATTTAGTTAG+AGG | - | chr7.3:27475182-27475201 | MS.gene51171:intron | 35.0% | |
| ATAAACAAACACATTACGGC+GGG | + | chr7.3:27474736-27474755 | None:intergenic | 35.0% | |
| ATCAATGATTCTCGTTAGTG+AGG | - | chr7.3:27475005-27475024 | MS.gene51171:CDS | 35.0% | |
| ATGAAGACAAAGAAAAGCCT+AGG | + | chr7.3:27477583-27477602 | None:intergenic | 35.0% | |
| ATTATAGTAGCTTTCGTCAC+AGG | + | chr7.3:27476253-27476272 | None:intergenic | 35.0% | |
| CTGGAGACATAAAATCGATA+AGG | + | chr7.3:27477331-27477350 | None:intergenic | 35.0% | |
| GACAAGGGAAAACTTCATTT+CGG | - | chr7.3:27477064-27477083 | MS.gene51171:intron | 35.0% | |
| GCGTTGAATGATATAGAGAA+TGG | - | chr7.3:27474916-27474935 | MS.gene51171:intron | 35.0% | |
| GTTGAAGAAAAACTTGAAGG+TGG | - | chr7.3:27477042-27477061 | MS.gene51171:intron | 35.0% | |
| TAAACATGCTATAGCATGCA+GGG | - | chr7.3:27476931-27476950 | MS.gene51171:intron | 35.0% | |
| TAGTTAGAGGAAGCTCAAAT+TGG | - | chr7.3:27475195-27475214 | MS.gene51171:intron | 35.0% | |
| TGTGCATTCTGGATTCATAA+TGG | - | chr7.3:27476209-27476228 | MS.gene51171:intron | 35.0% | |
| TTTAACATTCCTTGCTGAGT+GGG | - | chr7.3:27477214-27477233 | MS.gene51171:CDS | 35.0% | |
| ! | ATCTCGATGTTGTTGATAGA+AGG | + | chr7.3:27476070-27476089 | None:intergenic | 35.0% |
| ! | TTTTAACATTCCTTGCTGAG+TGG | - | chr7.3:27477213-27477232 | MS.gene51171:CDS | 35.0% |
| !! | ACGACTAGGTGTTATTGTTA+AGG | - | chr7.3:27475274-27475293 | MS.gene51171:intron | 35.0% |
| !! | CGACTAGGTGTTATTGTTAA+GGG | - | chr7.3:27475275-27475294 | MS.gene51171:intron | 35.0% |
| !! | CTATAGCTTTGTCTTTGTAC+AGG | - | chr7.3:27476655-27476674 | MS.gene51171:intron | 35.0% |
| !! | CTCCAGCCTTTAATTTTTGT+CGG | - | chr7.3:27477345-27477364 | MS.gene51171:intron | 35.0% |
| !! | GTGTTATTGTTAAGGGTGTT+TGG | - | chr7.3:27475282-27475301 | MS.gene51171:intron | 35.0% |
| !!! | CCTTTTTTCATGCTAGATTG+GGG | - | chr7.3:27475820-27475839 | MS.gene51171:intron | 35.0% |
| AAGGGAAAACTTCATTTCGG+CGG | - | chr7.3:27477067-27477086 | MS.gene51171:intron | 40.0% | |
| ATAATGGCTGAGTATGCACT+CGG | - | chr7.3:27476225-27476244 | MS.gene51171:intron | 40.0% | |
| ATGAAAACGCGTAGAATGGA+AGG | + | chr7.3:27474704-27474723 | None:intergenic | 40.0% | |
| ATGCATGAAAACGCGTAGAA+TGG | + | chr7.3:27474708-27474727 | None:intergenic | 40.0% | |
| CACCGACAAAAATTAAAGGC+TGG | + | chr7.3:27477350-27477369 | None:intergenic | 40.0% | |
| CCCCAATCTAGCATGAAAAA+AGG | + | chr7.3:27475823-27475842 | None:intergenic | 40.0% | |
| CCTAAGTCAATTGTCTTGTC+TGG | - | chr7.3:27475884-27475903 | MS.gene51171:intron | 40.0% | |
| GAAAAACTTGAAGGTGGACA+AGG | - | chr7.3:27477048-27477067 | MS.gene51171:intron | 40.0% | |
| GAGGTTAGAGATGCTTACTT+TGG | + | chr7.3:27474828-27474847 | None:intergenic | 40.0% | |
| GAGTCAATGTGACGCATTTA+TGG | - | chr7.3:27475244-27475263 | MS.gene51171:intron | 40.0% | |
| GCACTACGATTCAACATCAA+TGG | - | chr7.3:27474609-27474628 | MS.gene51171:CDS | 40.0% | |
| GCTGCTACAGGTAAACTTAT+CGG | - | chr7.3:27476179-27476198 | MS.gene51171:intron | 40.0% | |
| GGGTGTTTGGTAAAAAGTAG+TGG | - | chr7.3:27475295-27475314 | MS.gene51171:intron | 40.0% | |
| GTAAACATGCTATAGCATGC+AGG | - | chr7.3:27476930-27476949 | MS.gene51171:intron | 40.0% | |
| GTCCATTAGGTACTTTCTAC+AGG | - | chr7.3:27476107-27476126 | MS.gene51171:intron | 40.0% | |
| TAAACAAACACATTACGGCG+GGG | + | chr7.3:27474735-27474754 | None:intergenic | 40.0% | |
| TACTTTCTACAGGACTAGGA+AGG | - | chr7.3:27476117-27476136 | MS.gene51171:intron | 40.0% | |
| TAGGTACTTTCTACAGGACT+AGG | - | chr7.3:27476113-27476132 | MS.gene51171:intron | 40.0% | |
| TGAAAACGCGTAGAATGGAA+GGG | + | chr7.3:27474703-27474722 | None:intergenic | 40.0% | |
| TTAACATTCCTTGCTGAGTG+GGG | - | chr7.3:27477215-27477234 | MS.gene51171:CDS | 40.0% | |
| TTAATTGAGCTCTGCTCTCA+TGG | + | chr7.3:27476898-27476917 | None:intergenic | 40.0% | |
| TTACTGCAATTGTCGCAATC+TGG | + | chr7.3:27477250-27477269 | None:intergenic | 40.0% | |
| TTCGGTCATTTCTCTTAGCT+TGG | - | chr7.3:27474939-27474958 | MS.gene51171:intron | 40.0% | |
| TTCTATCTATGCCTTGCTTC+TGG | - | chr7.3:27476352-27476371 | MS.gene51171:CDS | 40.0% | |
| ! | ATCAGTGAAAGTGTGCGATA+CGG | - | chr7.3:27475222-27475241 | MS.gene51171:intron | 40.0% |
| ! | CATACAAATAGTGCTGCTAC+AGG | - | chr7.3:27476167-27476186 | MS.gene51171:intron | 40.0% |
| ! | CCAGACAAGACAATTGACTT+AGG | + | chr7.3:27475887-27475906 | None:intergenic | 40.0% |
| ! | TCTCTTAGCTTGGATTCTTC+TGG | - | chr7.3:27474949-27474968 | MS.gene51171:intron | 40.0% |
| ! | TGCGAGTGATTTTTGTGAAC+AGG | - | chr7.3:27474891-27474910 | MS.gene51171:intron | 40.0% |
| !! | CAGCCTTTAATTTTTGTCGG+TGG | - | chr7.3:27477348-27477367 | MS.gene51171:intron | 40.0% |
| !! | GTCCTGTAGAAAGTACCTAA+TGG | + | chr7.3:27476112-27476131 | None:intergenic | 40.0% |
| !! | TAGGGTGTTGAGTTAAGAGA+TGG | + | chr7.3:27477277-27477296 | None:intergenic | 40.0% |
| AATATGTACCTCAGTGGCAG+TGG | - | chr7.3:27477490-27477509 | MS.gene51171:intron | 45.0% | |
| ACATATTGTGTGCCCTATGG+TGG | + | chr7.3:27477477-27477496 | None:intergenic | 45.0% | |
| AGCTTGGATTCTTCTGGTGT+TGG | - | chr7.3:27474955-27474974 | MS.gene51171:intron | 45.0% | |
| AGTTTCCTTGTTACTCCACC+TGG | - | chr7.3:27476865-27476884 | MS.gene51171:intron | 45.0% | |
| ATCAGTGAACTCCAGAAGCA+AGG | + | chr7.3:27476366-27476385 | None:intergenic | 45.0% | |
| CAATTGTCGCAATCTGGCTA+CGG | + | chr7.3:27477244-27477263 | None:intergenic | 45.0% | |
| CAGCTGCACAAGGAAATTGA+AGG | + | chr7.3:27477417-27477436 | None:intergenic | 45.0% | |
| CTTCAATTTCCTTGTGCAGC+TGG | - | chr7.3:27477415-27477434 | MS.gene51171:CDS | 45.0% | |
| GCACACAATATGTACCTCAG+TGG | - | chr7.3:27477484-27477503 | MS.gene51171:intron | 45.0% | |
| GCAGAGGAGAAGAACGAAAA+CGG | + | chr7.3:27474643-27474662 | None:intergenic | 45.0% | |
| GGTACATATTGTGTGCCCTA+TGG | + | chr7.3:27477480-27477499 | None:intergenic | 45.0% | |
| TACGACTGCTGTACATTGCT+TGG | - | chr7.3:27476528-27476547 | MS.gene51171:intron | 45.0% | |
| TAGAGATGCTTACTTTGGCG+CGG | + | chr7.3:27474823-27474842 | None:intergenic | 45.0% | |
| ! | ATACTGACTAGTGACCTCGA+TGG | - | chr7.3:27476769-27476788 | MS.gene51171:intron | 45.0% |
| !!! | GTGCTGTGATGGACTGATTT+TGG | - | chr7.3:27476009-27476028 | MS.gene51171:intron | 45.0% |
| AATGAAGCTGACCTGAGCGA+AGG | + | chr7.3:27474679-27474698 | None:intergenic | 50.0% | |
| AATGCAATCGGAGTAGCAGC+TGG | - | chr7.3:27477449-27477468 | MS.gene51171:intron | 50.0% | |
| AGGTTTGAACGACGAAGCAG+AGG | + | chr7.3:27474659-27474678 | None:intergenic | 50.0% | |
| AGTGACCAGGTGGAGTAACA+AGG | + | chr7.3:27476873-27476892 | None:intergenic | 50.0% | |
| ATGCAATCGGAGTAGCAGCT+GGG | - | chr7.3:27477450-27477469 | MS.gene51171:intron | 50.0% | |
| TATGTGTTGCCAGCTGCACA+AGG | + | chr7.3:27477427-27477446 | None:intergenic | 50.0% | |
| TCGGCGATACTTGTGCATTC+TGG | - | chr7.3:27476198-27476217 | MS.gene51171:intron | 50.0% | |
| ACCGAGATCCACAGATCCAC+CGG | + | chr7.3:27474798-27474817 | None:intergenic | 55.0% | |
| ATGTACCTCAGTGGCAGTGG+TGG | - | chr7.3:27477493-27477512 | MS.gene51171:intron | 55.0% | |
| CAACGCTCTGTAGCCACTGT+CGG | - | chr7.3:27477545-27477564 | MS.gene51171:CDS | 55.0% | |
| CACGACGACAGGCAAGAATC+CGG | - | chr7.3:27474776-27474795 | MS.gene51171:CDS | 55.0% | |
| CGTCGTTCAAACCTTCGCTC+AGG | - | chr7.3:27474665-27474684 | MS.gene51171:CDS | 55.0% | |
| GAAGAGAAGACCACCGACAG+TGG | + | chr7.3:27477561-27477580 | None:intergenic | 55.0% | |
| GCAAGAATCCGGTGGATCTG+TGG | - | chr7.3:27474787-27474806 | MS.gene51171:intron | 55.0% | |
| GTCGGTGGTCTTCTCTTCCT+AGG | - | chr7.3:27477563-27477582 | MS.gene51171:CDS | 55.0% | |
| TCCGGTGGATCTGTGGATCT+CGG | - | chr7.3:27474794-27474813 | MS.gene51171:intron | 55.0% | |
| TCTCATGGCAAGTGACCAGG+TGG | + | chr7.3:27476883-27476902 | None:intergenic | 55.0% | |
| TGCAATCGGAGTAGCAGCTG+GGG | - | chr7.3:27477451-27477470 | MS.gene51171:intron | 55.0% | |
| TGCTCTCATGGCAAGTGACC+AGG | + | chr7.3:27476886-27476905 | None:intergenic | 55.0% | |
| TGTACCTCAGTGGCAGTGGT+GGG | - | chr7.3:27477494-27477513 | MS.gene51171:intron | 55.0% | |
| ! | ATTCTCTGGCTCACGACGAC+AGG | - | chr7.3:27474765-27474784 | MS.gene51171:CDS | 55.0% |
| ! | GACAGTGGCTACAGAGCGTT+GGG | + | chr7.3:27477546-27477565 | None:intergenic | 55.0% |
| ! | GAGGAAGCATGCTGGCATCT+AGG | - | chr7.3:27477516-27477535 | MS.gene51171:intron | 55.0% |
| CGACAGTGGCTACAGAGCGT+TGG | + | chr7.3:27477547-27477566 | None:intergenic | 60.0% | |
| GACGACAGGCAAGAATCCGG+TGG | - | chr7.3:27474779-27474798 | MS.gene51171:intron | 60.0% | |
| TACGGTCACCCCACTCAGCA+AGG | + | chr7.3:27477226-27477245 | None:intergenic | 60.0% | |
| TAGCAGCTGGGGCCACCATA+GGG | - | chr7.3:27477462-27477481 | MS.gene51171:intron | 60.0% | |
| ! | AGTGGTGGGAGGAAGCATGC+TGG | - | chr7.3:27477508-27477527 | MS.gene51171:intron | 60.0% |
| CGCTCTGTAGCCACTGTCGG+TGG | - | chr7.3:27477548-27477567 | MS.gene51171:CDS | 65.0% | |
| GTAGCAGCTGGGGCCACCAT+AGG | - | chr7.3:27477461-27477480 | MS.gene51171:intron | 65.0% | |
| TCCTCCCACCACTGCCACTG+AGG | + | chr7.3:27477501-27477520 | None:intergenic | 65.0% | |
| ! | ACCTCAGTGGCAGTGGTGGG+AGG | - | chr7.3:27477497-27477516 | MS.gene51171:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 27474606 | 27477625 | 27474606 | ID=MS.gene51171 |
| chr7.3 | mRNA | 27474606 | 27477625 | 27474606 | ID=MS.gene51171.t1;Parent=MS.gene51171 |
| chr7.3 | exon | 27477545 | 27477625 | 27477545 | ID=MS.gene51171.t1.exon1;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27477545 | 27477625 | 27477545 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27477402 | 27477467 | 27477402 | ID=MS.gene51171.t1.exon2;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27477402 | 27477467 | 27477402 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27477205 | 27477318 | 27477205 | ID=MS.gene51171.t1.exon3;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27477205 | 27477318 | 27477205 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27476297 | 27476395 | 27476297 | ID=MS.gene51171.t1.exon4;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27476297 | 27476395 | 27476297 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27476043 | 27476115 | 27476043 | ID=MS.gene51171.t1.exon5;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27476043 | 27476115 | 27476043 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27475639 | 27475724 | 27475639 | ID=MS.gene51171.t1.exon6;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27475639 | 27475724 | 27475639 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27475106 | 27475189 | 27475106 | ID=MS.gene51171.t1.exon7;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27475106 | 27475189 | 27475106 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27474966 | 27475025 | 27474966 | ID=MS.gene51171.t1.exon8;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27474966 | 27475025 | 27474966 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| chr7.3 | exon | 27474606 | 27474797 | 27474606 | ID=MS.gene51171.t1.exon9;Parent=MS.gene51171.t1 |
| chr7.3 | CDS | 27474606 | 27474797 | 27474606 | ID=cds.MS.gene51171.t1;Parent=MS.gene51171.t1 |
| Gene Sequence |
| Protein sequence |
